Citrus Sinensis ID: 000133
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2100 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.069 | 0.219 | 0.321 | 1e-09 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.062 | 0.158 | 0.4 | 2e-09 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.108 | 0.372 | 0.295 | 7e-08 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.106 | 0.355 | 0.300 | 8e-08 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.096 | 0.310 | 0.290 | 2e-07 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.081 | 0.226 | 0.307 | 4e-07 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.064 | 0.220 | 0.324 | 4e-07 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.034 | 0.103 | 0.405 | 6e-07 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.051 | 0.157 | 0.372 | 3e-06 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.051 | 0.157 | 0.372 | 3e-06 |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 48/193 (24%)
Query: 404 LLVGLITMATNEVQEELVRALLKLC---NNEGSLWRALQGREGIQLLISLLGLSSEQQQE 460
LLVGL++ + +QE V ALL L NN+G++ A I ++ +L S + +E
Sbjct: 398 LLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSA----GAIPGIVQVLKKGSMEARE 453
Query: 461 CSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC----NHSE 516
+ A L LS D++K I A G IPPLV +L G+ + K+D+A+ L NLC N +
Sbjct: 454 NAAATLFSLSV-IDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGK 512
Query: 517 DIRACV------------------------------------ESADAVPALLWLLKNGSA 540
IRA V S+DAVP+L+ ++ GS
Sbjct: 513 AIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSP 572
Query: 541 NGKEIAAKTLNHL 553
+E AA L HL
Sbjct: 573 RNRENAAAVLVHL 585
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 436 RALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494
R + G G I LL+ LL + QE +V L LS ND++K AI AG I PL+ +LE
Sbjct: 576 RIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLS-INDNNKKAIADAGAIEPLIHVLE 634
Query: 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL- 553
+GS++AKE+SA+ L +L E+ + + + A+ L+ LL NG+ GK+ AA L +L
Sbjct: 635 NGSSEAKENSAATLFSLSVIEEN-KIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLS 693
Query: 554 IHKSDTATISQLTAL 568
IH+ + A I Q A+
Sbjct: 694 IHQENKAMIVQSGAV 708
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 9/237 (3%)
Query: 1174 LAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFA-A 1232
L+K N+I++ EAGA+ L L+ E A T +L + S E + FA A
Sbjct: 358 LSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNL--SIYENNKELIMFAGA 415
Query: 1233 VSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAA 1292
V+ +V VLR G AR +AA L SL AD + A+ LV++L G R + A
Sbjct: 416 VTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDA 475
Query: 1293 IAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS 1352
AL L + ++ A V V L ++LS + + +A + VL N +S
Sbjct: 476 ATALFNLCIYHGNKGRA---VRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKS 532
Query: 1353 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVIPLVGL 1407
+ A + L+ +L T+ + + + L L D E+L + GAV+PL+ L
Sbjct: 533 AIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLIT-IGRLGAVVPLMDL 588
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 1174 LAKDCPSNKIVMVEAGALEALTKYL-SLGPQDATEEAATDLLGILFSSAEIRRHESAF-- 1230
L+K N+I++ EAGA+ L K L S G + E A T +L + I H
Sbjct: 368 LSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNL-----SIYEHNKELIM 422
Query: 1231 --AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLERE 1288
AV+ +V VLR G AR +AA L SL AD + A A+ LV++L G R
Sbjct: 423 LAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRG 482
Query: 1289 QHAAIAALVRL--LSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346
+ A AL L N RA V V L ++L+ + S + +A + VL
Sbjct: 483 KKDAATALFNLCIYQGNKGRA-----VRAGIVKPLVKMLTDSSSERMADEALTILSVLAS 537
Query: 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVIPL 1404
N ++ + A + PL+ L + + + L L D E+L + GAV+PL
Sbjct: 538 NQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLIS-IGRLGAVVPL 596
Query: 1405 VGL 1407
+ L
Sbjct: 597 MEL 599
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 424 LLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQ-QECSVALLCLLSNENDDSKWAITA 482
LL NN + A G I LL++LL +S++ + QE +V + LS ++ + +
Sbjct: 381 LLAKQNNHNRVAIAASG--AIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYS 438
Query: 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANG 542
+G +P +V +L+ GS +A+E++A+ L +L E+ + + +A A+P L+ LL GS G
Sbjct: 439 SGAVPGIVHVLQKGSMEARENAAATLFSLSVIDEN-KVTIGAAGAIPPLVTLLSEGSQRG 497
Query: 543 KEIAAKTLNHL-IHKSD--TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599
K+ AA L +L I + + A + L +L L E + ++D S+L+++S +
Sbjct: 498 KKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKS 557
Query: 600 GSAANDAVETMIKILSSTKEETQAKSASAL 629
A DAV ++ + S + SA+ L
Sbjct: 558 EVGAADAVPVLVDFIRSGSPRNKENSAAVL 587
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 7/179 (3%)
Query: 384 ASLYGNPLLSIKLE----NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 439
ASL+ +L + E ++ A + LV L+ T +++ AL L + R +Q
Sbjct: 577 ASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQ 636
Query: 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 499
+ ++ L+ LL E + +VALL LS + + AI GGIP LV+ ++ GS +
Sbjct: 637 AK-AVKYLVELLDPDLEMVDK-AVALLANLSAVGE-GRQAIVREGGIPLLVETVDLGSQR 693
Query: 500 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558
KE++AS+L LC +S V A+P L+ L ++G+ KE A + L+H ++ D
Sbjct: 694 GKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRD 752
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 21 SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 80
SSS + +E+++ LL L N S V SH A+P +V +L++GS+ + AA L S
Sbjct: 375 SSSDPRTQEHAVTALLNLSIHENNKASIVDSH--AIPKIVEVLKTGSMETRENAAATLFS 432
Query: 81 LCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE- 139
L +E +V + G IPPL+ LL S G+ AA I+ + Y G+K+ + +
Sbjct: 433 LSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCI-----YQGNKVRAVKA 487
Query: 140 GVVPVLWEQLKNGLKSGNVVDNLLT 164
G+V L L + +G ++D L+
Sbjct: 488 GIVIHLMNFLVD--PTGGMIDEALS 510
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 475 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534
+ K AI GGIP LV+++E GSA+ KE++ + L LC HS V +P L+ L
Sbjct: 618 EGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVAL 677
Query: 535 LKNGSANGKEIAAKTLNHL 553
K+G+A GKE A L +
Sbjct: 678 TKSGTARGKEKAQNLLKYF 696
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500
R I L+S L ++Q + A L LL+ N +++ I AG IP L+ +L S +
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRT 425
Query: 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTL 550
+E + + L NL H ED +A + S+ AVP+++ +LKNGS +E AA TL
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATL 474
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500
R I L+S L ++Q + A L LL+ N +++ I AG IP L+ +L S +
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRT 425
Query: 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTL 550
+E + + L NL H ED +A + S+ AVP+++ +LKNGS +E AA TL
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATL 474
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2100 | ||||||
| 255576178 | 2098 | ubiquitin-protein ligase, putative [Rici | 0.998 | 0.999 | 0.898 | 0.0 | |
| 224096231 | 2116 | predicted protein [Populus trichocarpa] | 0.982 | 0.974 | 0.886 | 0.0 | |
| 449496450 | 2124 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.987 | 0.871 | 0.0 | |
| 224083759 | 2143 | predicted protein [Populus trichocarpa] | 0.981 | 0.962 | 0.886 | 0.0 | |
| 449451471 | 2130 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.984 | 0.869 | 0.0 | |
| 356538029 | 2240 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.936 | 0.871 | 0.0 | |
| 359480838 | 2179 | PREDICTED: uncharacterized protein LOC10 | 0.999 | 0.963 | 0.877 | 0.0 | |
| 356569261 | 2164 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.969 | 0.871 | 0.0 | |
| 356528503 | 2151 | PREDICTED: uncharacterized protein LOC10 | 0.999 | 0.975 | 0.854 | 0.0 | |
| 356511119 | 2151 | PREDICTED: uncharacterized protein LOC10 | 0.999 | 0.975 | 0.854 | 0.0 |
| >gi|255576178|ref|XP_002528983.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223531573|gb|EEF33402.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3741 bits (9700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1887/2101 (89%), Positives = 2000/2101 (95%), Gaps = 4/2101 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSS+QEKE+SLRQLLELI+TRENAFSAVGSHSQAVPVLV
Sbjct: 1 MEDPDGTLASVAQCIEQLRQSSSSLQEKEHSLRQLLELIETRENAFSAVGSHSQAVPVLV 60
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA+GQIAAAKTIY
Sbjct: 61 SLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSADGQIAAAKTIY 120
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGA+D+VGSKIFSTEGVVPVLWE LKNGLK+GN+VDNLLTGAL+NLS+STEGFW+A
Sbjct: 121 AVSQGGARDHVGSKIFSTEGVVPVLWELLKNGLKTGNLVDNLLTGALKNLSSSTEGFWSA 180
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DILVKLLT GQS TQA+VCFLLACMM ED S+CS+VLAA+ATKQLLKL+G+GN
Sbjct: 181 TIQAGGVDILVKLLTTGQSGTQANVCFLLACMMMEDASICSKVLAAEATKQLLKLIGTGN 240
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+A VRAEAAGALKSLS CK+ARREIA NGIP +INATIAPSKEFMQGE+AQALQE+AM
Sbjct: 241 DAPVRAEAAGALKSLSAQCKEARREIANHNGIPVLINATIAPSKEFMQGEHAQALQEHAM 300
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESCSSPAQ ADTLGALASALMIYDS+AEST+ SDP+ +E
Sbjct: 301 CALANISGGLSYVISSLGQSLESCSSPAQTADTLGALASALMIYDSQAESTRASDPMSIE 360
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTLV QFKPRLPFLVQERTIEALASLYGN +LSIKL NSEAKRLLVGLITMATNEVQ+EL
Sbjct: 361 QTLVQQFKPRLPFLVQERTIEALASLYGNAILSIKLANSEAKRLLVGLITMATNEVQDEL 420
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VRALL LCNNEGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 421 VRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 480
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 481 TAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSP 540
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SML +VS +DILREG
Sbjct: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLCMVSLNDILREG 600
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SA+NDA+ETMIKILSSTKEETQAKSASALAGIFE RKDLRESSIAVKTLWSVMKLL+V S
Sbjct: 601 SASNDAIETMIKILSSTKEETQAKSASALAGIFEVRKDLRESSIAVKTLWSVMKLLNVES 660
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E ILVE+SRCLA+IFLS++ENR+VAAVA+DALSPLV LA S LEVAEQATCALANLILD
Sbjct: 661 ENILVESSRCLASIFLSIKENRDVAAVAQDALSPLVTLANSSALEVAEQATCALANLILD 720
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
+E SE A EEIILPATRVL EGT+SGKT AAAAIA LLHSR+IDY +TDCVNRAGTVLA
Sbjct: 721 TEASETATPEEIILPATRVLHEGTVSGKTHAAAAIAHLLHSRRIDYAVTDCVNRAGTVLA 780
Query: 781 LVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFL+SA+G S+ATSEALDALAILSRSGGAS H+KP W VLAEFPKSITPIVSSIADAT
Sbjct: 781 LVSFLDSANGKSIATSEALDALAILSRSGGASEHIKPTWAVLAEFPKSITPIVSSIADAT 840
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
PLLQDKAIEILSRLCRDQP VLG V ASGCI S+ARRVIS NPKVKIGG A+LICAA
Sbjct: 841 PLLQDKAIEILSRLCRDQPVVLGKAVVSASGCIPSVARRVISSANPKVKIGGVAVLICAA 900
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
KV+H+R+VEDLN SNSC LIQSLV ML+ E S L +G D KEAISI R+T EE+ NG
Sbjct: 901 KVSHERVVEDLNQSNSCTHLIQSLVAMLNSAETS-LGTEG-DVKEAISICRHTPEESGNG 958
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
+S + TA+++G NLAIWLL VLACHD K K VIM+AGA++VLTDRIS Q++Q ++
Sbjct: 959 -DSNAETALVYGYNLAIWLLSVLACHDGKSKTVIMDAGAVEVLTDRISHCYMQYSQSEFI 1017
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWICALLLAILFQDRDIIRAHATMK+IP+LANLLKSE+SANRYFAAQA+ASLVCNG
Sbjct: 1018 EDSSIWICALLLAILFQDRDIIRAHATMKSIPVLANLLKSEDSANRYFAAQAIASLVCNG 1077
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+ DLL+LSEEFALVRYPDQV LERLFRVEDIRV
Sbjct: 1078 SRGTLLSVANSGAAGGLISLLGCADVDIADLLELSEEFALVRYPDQVTLERLFRVEDIRV 1137
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QLAKDCP NKIVMVE+GALEALTKYLS
Sbjct: 1138 GATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLAKDCPPNKIVMVESGALEALTKYLS 1197
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LGPQDATEEAATDLLGILFSSAEIRRHESAF AVSQLVAVLRLGGRGARYSAAKALESLF
Sbjct: 1198 LGPQDATEEAATDLLGILFSSAEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALESLF 1257
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNAE++RQAVQPLVEILNTG+E+EQHAAIAALVRLLSENPSRALAVADVEMNAVD
Sbjct: 1258 SADHIRNAETSRQAVQPLVEILNTGMEKEQHAAIAALVRLLSENPSRALAVADVEMNAVD 1317
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRILSSNCSMELKGDAAELCGVLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQHSVV
Sbjct: 1318 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQHSVV 1377
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP+CKLEMVK
Sbjct: 1378 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPACKLEMVK 1437
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIES+LDI +EAPDFLC++FAELLRILTNNA IAKG SAAKVVEPLFLLLTR EFGPD
Sbjct: 1438 AGVIESILDIFYEAPDFLCASFAELLRILTNNASIAKGASAAKVVEPLFLLLTRPEFGPD 1497
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRADY+LTSHQAIEPLIPLLDS APAVQQLAAELLSHLLLEE
Sbjct: 1498 GQHSALQVLVNILEHPQCRADYNLTSHQAIEPLIPLLDSAAPAVQQLAAELLSHLLLEEH 1557
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKDPVTQQ+IGPLIRVLGSGIHILQQRAVKALVSIAL WPNEIAKEGGVTELS++ILQA
Sbjct: 1558 LQKDPVTQQIIGPLIRVLGSGIHILQQRAVKALVSIALMWPNEIAKEGGVTELSRVILQA 1617
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPHALWESAASVL+SILQFSSEFYLEVPVAVLVRLLRSGSE TV+G+LNALLVLESD
Sbjct: 1618 DPSLPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESD 1677
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
DGTSAEAMAESGAIEALLELLR HQCEETAARLLEVLLNN KIRESKATK+AILPLSQYL
Sbjct: 1678 DGTSAEAMAESGAIEALLELLRCHQCEETAARLLEVLLNNVKIRESKATKAAILPLSQYL 1737
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNEGLARS DAVSACRALVNVLEEQPTEEMKVVAICAL
Sbjct: 1738 LDPQTQAQQARLLATLALGDLFQNEGLARSTDAVSACRALVNVLEEQPTEEMKVVAICAL 1797
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDP+TSVQAAMFVKLLFSNHTIQEYASSETV
Sbjct: 1798 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFVKLLFSNHTIQEYASSETV 1857
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAA+EK+LWATGTVNEEYLKALN+LF+NFPRLRATEPATLSIPHLVT+LKTGSEATQ
Sbjct: 1858 RAITAAVEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQ 1917
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAAL+ALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1918 EAALEALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1977
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTK+VSTGPNPEW+ESFAWSFE PPKG
Sbjct: 1978 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFAWSFESPPKG 2037
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESK+GPSR LEIEF WSN
Sbjct: 2038 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKTGPSRILEIEFQWSN 2097
Query: 2100 K 2100
K
Sbjct: 2098 K 2098
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096231|ref|XP_002310584.1| predicted protein [Populus trichocarpa] gi|222853487|gb|EEE91034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3716 bits (9636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1863/2101 (88%), Positives = 1966/2101 (93%), Gaps = 38/2101 (1%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIE LRQSSSSVQEKEY+LRQL EL++TRENAFSAVGSHSQAVPVLV
Sbjct: 53 MEDPDGTLASVAQCIELLRQSSSSVQEKEYALRQLRELVETRENAFSAVGSHSQAVPVLV 112
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY
Sbjct: 113 SLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 172
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGAKD+VGSKIFSTEGVVP LWE L+NGLK+GN+VDNLLTGAL+NLS+STEGFW+A
Sbjct: 173 AVSQGGAKDHVGSKIFSTEGVVPALWELLRNGLKTGNLVDNLLTGALKNLSSSTEGFWSA 232
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DILVKLLT GQS TQA+VCFLLACMM +D S+C +VLAA+ATKQLLKLLG GN
Sbjct: 233 TIQAGGVDILVKLLTTGQSDTQANVCFLLACMMMQDASICFKVLAAEATKQLLKLLGPGN 292
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EASVRAEAAGALKSLS CKDAR+EIA SNGIPA+INATIAPSKEFMQGEYAQALQENAM
Sbjct: 293 EASVRAEAAGALKSLSAQCKDARQEIAKSNGIPALINATIAPSKEFMQGEYAQALQENAM 352
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESCSSPAQ ADTLGALASALMIYDSKAEST+ SDP+ +E
Sbjct: 353 CALANISGGLSFVISSLGQSLESCSSPAQAADTLGALASALMIYDSKAESTRASDPVAIE 412
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTLVNQFKPRLPFLVQERTIEALASLYGN +LS+KL NSEAKRLLVGLITMA NEVQ+EL
Sbjct: 413 QTLVNQFKPRLPFLVQERTIEALASLYGNAILSVKLVNSEAKRLLVGLITMAINEVQDEL 472
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VRALL LCNNEGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 473 VRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 532
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 533 TAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSP 592
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV SD+LR+G
Sbjct: 593 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLSDVLRDG 652
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAANDA+ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA
Sbjct: 653 SAANDAIETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA--------------- 697
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
NREVAAVARDALSPL+ LA S LEVAEQATCALANLILD
Sbjct: 698 --------------------NREVAAVARDALSPLIALANSSTLEVAEQATCALANLILD 737
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
EVS+KAI EII+PATRVL EGTISGKT AAAAIARLLHSR+ID +ITDCVNRAGTVLA
Sbjct: 738 GEVSKKAIPNEIIVPATRVLREGTISGKTHAAAAIARLLHSRRIDNSITDCVNRAGTVLA 797
Query: 781 LVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFLESAS GS ATSEAL ALAILSRS G SGH+KPAW VLAEFPK ITPIV SIADAT
Sbjct: 798 LVSFLESASGGSAATSEALAALAILSRSEGTSGHIKPAWAVLAEFPKRITPIVLSIADAT 857
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
PLLQDKAIEILSRLCRDQP VLG+ V ASGCI S+ARRVI+ TNPKVKIGGAALLICAA
Sbjct: 858 PLLQDKAIEILSRLCRDQPFVLGEAVACASGCIPSVARRVINSTNPKVKIGGAALLICAA 917
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
KV+HQR+VEDLN SNSC+ LIQSLVTML +ASP + +DDKE ISI+RY ++E N
Sbjct: 918 KVSHQRVVEDLNQSNSCSHLIQSLVTMLCSADASPSEDLVDDDKEVISIHRY-AKEGEN- 975
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
GES TAVI+G NLA+WLL VLACHDEK KIVIMEAGA++VLT+RIS +S ++Q D+
Sbjct: 976 GESHKGTAVIYGYNLAVWLLSVLACHDEKSKIVIMEAGAVEVLTNRISSCISHYSQSDFS 1035
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWICALLLAILFQDRDIIRAHATMK+IP+LA++LKSEESANRYFAAQA+ASLVCNG
Sbjct: 1036 EDSSIWICALLLAILFQDRDIIRAHATMKSIPVLASMLKSEESANRYFAAQAIASLVCNG 1095
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+ DLL+LSE FALVRYPDQVALERLFRVEDIRV
Sbjct: 1096 SRGTLLSVANSGAAGGLISLLGCADGDISDLLELSEVFALVRYPDQVALERLFRVEDIRV 1155
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFL+LG L QLAKDCP NK VMVE+G LEALTKYLS
Sbjct: 1156 GATSRKAIPALVDLLKPIPDRPGAPFLSLGLLNQLAKDCPPNKTVMVESGVLEALTKYLS 1215
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LGPQDATEEAATDLLGILF+SAEIRRHE+AF AVSQLVAVLRLGGR ARYSAAKALESLF
Sbjct: 1216 LGPQDATEEAATDLLGILFNSAEIRRHEAAFGAVSQLVAVLRLGGRAARYSAAKALESLF 1275
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNA++ARQAVQPLVEILNTGLE+EQHAAIAALVRLLSENPSRALAVADVEMNAVD
Sbjct: 1276 SADHIRNADTARQAVQPLVEILNTGLEKEQHAAIAALVRLLSENPSRALAVADVEMNAVD 1335
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRILSSNCSMELKGDAAELCGVLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQ+SVV
Sbjct: 1336 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQYSVV 1395
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
AL+KLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP+CK+EMVK
Sbjct: 1396 CALEKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPACKMEMVK 1455
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIES+LDILHEAPDFL +AFAELLRILTNNA IAKGPSAAKVVEPLFL LTR EFGPD
Sbjct: 1456 AGVIESILDILHEAPDFLGAAFAELLRILTNNASIAKGPSAAKVVEPLFLQLTRPEFGPD 1515
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRADY+LTSHQ IEPLIPLLDSPAPAVQQLAAELLSHLL+EE
Sbjct: 1516 GQHSALQVLVNILEHPQCRADYTLTSHQTIEPLIPLLDSPAPAVQQLAAELLSHLLMEEH 1575
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKD VTQQVIGPLIRVLGSGIHILQQRAVKALVSIAL WPNEIAKEGGV+ELSK+ILQA
Sbjct: 1576 LQKDSVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVSELSKVILQA 1635
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPHALWESAASVL+SILQFSSEFYLEVPVAVLVRLLRSG E TV+G+LNALLVLESD
Sbjct: 1636 DPSLPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGLESTVVGALNALLVLESD 1695
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRESK TKSAILPLSQYL
Sbjct: 1696 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRESKVTKSAILPLSQYL 1755
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNEGLARS DAVSACRALVNVLEEQPTEEMKVVAICAL
Sbjct: 1756 LDPQTQAQQARLLATLALGDLFQNEGLARSTDAVSACRALVNVLEEQPTEEMKVVAICAL 1815
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSNKRAVAEAGGVQVVLD+IGSSDP+TSVQAAMFVKLLFSNHTIQEYASSETV
Sbjct: 1816 QNLVMYSRSNKRAVAEAGGVQVVLDVIGSSDPDTSVQAAMFVKLLFSNHTIQEYASSETV 1875
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWATGTVNEEYLKALNALF+NFPRLRATEPATLSIPHLVT+LKTGSEATQ
Sbjct: 1876 RAITAAIEKDLWATGTVNEEYLKALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQ 1935
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALDALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1936 EAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1995
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TLVVIIKRGNNMKQSVGNPSVYCK+TLG+TPPRQTK+VSTGPNPE++ESF+WSFE PPKG
Sbjct: 1996 TLVVIIKRGNNMKQSVGNPSVYCKITLGSTPPRQTKVVSTGPNPEFDESFSWSFESPPKG 2055
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLP+SKSGPSRNLEIEF WSN
Sbjct: 2056 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPSRNLEIEFQWSN 2115
Query: 2100 K 2100
K
Sbjct: 2116 K 2116
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449496450|ref|XP_004160137.1| PREDICTED: uncharacterized protein LOC101230042 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3659 bits (9489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1831/2101 (87%), Positives = 1977/2101 (94%), Gaps = 4/2101 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSSVQEKE+SLRQLLELIDTRE+AFSAVGSHSQAVPVLV
Sbjct: 27 MEDPDGTLASVAQCIEQLRQSSSSVQEKEFSLRQLLELIDTRESAFSAVGSHSQAVPVLV 86
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS+EGQIAAAKTIY
Sbjct: 87 SLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSSEGQIAAAKTIY 146
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGA+D+VGSKIFSTEGVVPVLWEQL NGLKSGNVV LLTGALRNLS+STEGFW+A
Sbjct: 147 AVSQGGARDHVGSKIFSTEGVVPVLWEQLHNGLKSGNVV-GLLTGALRNLSSSTEGFWSA 205
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+ AGG+DILV LL G+ +TQA+VCFLLA +M ED S CS+VLAA+ATK+LLKL+G GN
Sbjct: 206 TINAGGVDILVNLLATGEPNTQANVCFLLAHVMMEDASFCSKVLAAEATKKLLKLIGPGN 265
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EASVRAEAAGALKSLS CK+ARRE+A SNGIPA+INATIAPSKEFMQGEYAQALQENAM
Sbjct: 266 EASVRAEAAGALKSLSAQCKEARREVASSNGIPALINATIAPSKEFMQGEYAQALQENAM 325
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLE+CSS AQ ADTLGALASALMIYDSK E+T+ SDP+I+E
Sbjct: 326 CALANISGGLSYVISSLGQSLEACSSAAQTADTLGALASALMIYDSKEEATRASDPIIIE 385
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTLV QF R+ FLVQERTIEALASLYGNP+L++KL NS+AKRLLVGLITMATNEVQEEL
Sbjct: 386 QTLVKQFGSRVTFLVQERTIEALASLYGNPILAVKLANSDAKRLLVGLITMATNEVQEEL 445
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VRALL LCNNEGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 446 VRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 505
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS+
Sbjct: 506 TAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSS 565
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV +DI+REG
Sbjct: 566 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLNDIVREG 625
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
+AANDA+ETMIKIL+ST+EETQAKSASALAGIFE RKDLRESSIA++TL SV+KLL V S
Sbjct: 626 TAANDAIETMIKILNSTREETQAKSASALAGIFEIRKDLRESSIAIQTLLSVIKLLKVES 685
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
+ IL EASRCLAAIFLS++ENR+VAA ARD LSPLVVLA S VLEV E +TCALANL+LD
Sbjct: 686 DSILAEASRCLAAIFLSIKENRDVAAAARDVLSPLVVLAKSAVLEVTELSTCALANLLLD 745
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
SEV EKA+ EEIILPATRVL EGT+SGKT AAA IARLL SRKID++ITDCVN AGTVLA
Sbjct: 746 SEVQEKAVTEEIILPATRVLREGTMSGKTHAAAGIARLLRSRKIDHSITDCVNSAGTVLA 805
Query: 781 LVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFL SA + +V+TSEALDALAILSRS G SG +KPAW VLAEFP+SI+PIV+SI DAT
Sbjct: 806 LVSFLGSADTRTVSTSEALDALAILSRSEGVSGTMKPAWAVLAEFPQSISPIVASITDAT 865
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
P+LQDKAIE+L+RLCRDQP V+G+EV ASGCI+S++ RVI+ TN KVKIGG ALL+CAA
Sbjct: 866 PILQDKAIEVLARLCRDQPGVIGEEVVTASGCIASVSTRVINSTNIKVKIGGTALLVCAA 925
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
VNH R++EDL+ S+SC+ LIQSLV MLS ++S L NQ + DKE ISIYR +E G
Sbjct: 926 NVNHHRLLEDLHASSSCSLLIQSLVAMLSSSQSSVLDNQSDTDKEFISIYRL-PKEGSCG 984
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
E +TAV++G NLAIWLLC+LACHD + K VIMEAGA++VLT+ IS+ SQ+ Q+D+K
Sbjct: 985 TECNKATAVVYGVNLAIWLLCLLACHDGRSKTVIMEAGAVEVLTEGISNYSSQYAQIDFK 1044
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWI +LLLAILFQDRDIIRAHATMK+IP++ANLLK+EE ANRYFAAQA+ASLVCNG
Sbjct: 1045 EDSSIWISSLLLAILFQDRDIIRAHATMKSIPVIANLLKAEEPANRYFAAQAIASLVCNG 1104
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCADAD+ DLL+LSEEF LVRYP+QVALERLFRV+D+R
Sbjct: 1105 SRGTLLSVANSGAAGGLISLLGCADADIYDLLELSEEFMLVRYPEQVALERLFRVDDMRT 1164
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QLAKDCPSNKIVMVE+GALEALTKYLS
Sbjct: 1165 GATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLAKDCPSNKIVMVESGALEALTKYLS 1224
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LGPQDATEEAATDLLGILFSS+EIRRHESAF AVSQLVAVLRLGGRGARYSAAKALESLF
Sbjct: 1225 LGPQDATEEAATDLLGILFSSSEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALESLF 1284
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNAES+RQAVQPLVEIL+TG EREQHAAIAALVRLLSENPSRALAVADVEMNAVD
Sbjct: 1285 SADHIRNAESSRQAVQPLVEILSTGSEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1344
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLC+ILS+NC+M+LKGDAAELC VLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQ SVV
Sbjct: 1345 VLCKILSTNCTMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQQSVV 1404
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRN+MLHEA+SRALVKLGKDRP+CK+EMVK
Sbjct: 1405 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNFMLHEAVSRALVKLGKDRPACKMEMVK 1464
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIES+LDIL EAPDFLCSAFAELLRILTNNA IAKG SAAKVVEPLFLLLTR EFGPD
Sbjct: 1465 AGVIESILDILLEAPDFLCSAFAELLRILTNNANIAKGSSAAKVVEPLFLLLTRPEFGPD 1524
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRADY+LT HQAIEPLIPLLDSPAPAVQQLAAELLSHLL+EE
Sbjct: 1525 GQHSALQVLVNILEHPQCRADYTLTCHQAIEPLIPLLDSPAPAVQQLAAELLSHLLVEEH 1584
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKD VTQQVIGPLIRVLGSGI ILQQRAVKALVSIALTWPNEIAKEGGV+ELSK+ILQA
Sbjct: 1585 LQKDSVTQQVIGPLIRVLGSGIQILQQRAVKALVSIALTWPNEIAKEGGVSELSKVILQA 1644
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPH+LWESAA+VL+SILQFSSEFYLEVPVAVLVRLLRSG E TV+G+LNALLVLESD
Sbjct: 1645 DPSLPHSLWESAATVLASILQFSSEFYLEVPVAVLVRLLRSGLESTVVGALNALLVLESD 1704
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
D TSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRE+K TKSAI+PLSQYL
Sbjct: 1705 DATSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYL 1764
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQ RLLATLALGDLFQNE LARS DAVSACRALVNVLE+QPTEEMKVVAICAL
Sbjct: 1765 LDPQTQAQQPRLLATLALGDLFQNEALARSTDAVSACRALVNVLEDQPTEEMKVVAICAL 1824
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDP+TSVQAAMF+KLLFSNHTIQEYASSETV
Sbjct: 1825 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFIKLLFSNHTIQEYASSETV 1884
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWATGTVNEEYLKALN+LF+NFPRLRATEPATLSIPHLVT+LKTG+EATQ
Sbjct: 1885 RAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGTEATQ 1944
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALD+LFLLRQAWSACPAEVS+AQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1945 EAALDSLFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2004
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TL+VIIKRGNNMKQSVGNPSV+CKLTLGNTPPRQTK+VSTGPNPEW+E+FAWSFE PPKG
Sbjct: 2005 TLLVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDENFAWSFESPPKG 2064
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKLHISCKNKSKMGKSSFGKVTIQID+VVMLGAVAGEYTLLPESKSGP RNLEIEF WSN
Sbjct: 2065 QKLHISCKNKSKMGKSSFGKVTIQIDKVVMLGAVAGEYTLLPESKSGP-RNLEIEFQWSN 2123
Query: 2100 K 2100
K
Sbjct: 2124 K 2124
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083759|ref|XP_002307113.1| predicted protein [Populus trichocarpa] gi|222856562|gb|EEE94109.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3657 bits (9482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1832/2067 (88%), Positives = 1942/2067 (93%), Gaps = 5/2067 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLR+SSSSVQEKEY+LRQL EL++TRENAFSAVGSHSQAVPVLV
Sbjct: 53 MEDPDGTLASVAQCIEQLRRSSSSVQEKEYALRQLRELVETRENAFSAVGSHSQAVPVLV 112
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS EGQIAAAKTIY
Sbjct: 113 SLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQIAAAKTIY 172
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGAKD+VGSKIFSTEGVVPVLWE L+NGLK+G +VDNLLTGAL+NLS+STEGFW+A
Sbjct: 173 AVSQGGAKDHVGSKIFSTEGVVPVLWELLRNGLKTGKLVDNLLTGALKNLSSSTEGFWSA 232
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DILVKLLT GQS TQA++CFLLACMM ED S+CS+VLAA+ATKQLLKLLG GN
Sbjct: 233 TIQAGGVDILVKLLTTGQSDTQANICFLLACMMMEDESICSKVLAAEATKQLLKLLGPGN 292
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EASVRAEAAGALKSLS CKDAR+EIA SNGIPA+INATIAPSKEFMQGEYAQALQE+AM
Sbjct: 293 EASVRAEAAGALKSLSAQCKDARQEIAKSNGIPALINATIAPSKEFMQGEYAQALQEHAM 352
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESCSSPAQ ADTLGALASALMIYDSKAEST+ SDP+++E
Sbjct: 353 CALANISGGLSFVISSLGQSLESCSSPAQTADTLGALASALMIYDSKAESTRASDPVVIE 412
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTLVNQF P LP+LVQERTIEALASLYGN +LS+KL NSEAKRLLVGLITMATNEVQ+EL
Sbjct: 413 QTLVNQFNPHLPYLVQERTIEALASLYGNAILSVKLANSEAKRLLVGLITMATNEVQDEL 472
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VRALL LCNNEGSLWR+LQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 473 VRALLALCNNEGSLWRSLQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 532
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 533 TAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSL 592
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV SD+LREG
Sbjct: 593 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVHLSDVLREG 652
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAANDA+ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI+VKTLWSVMKLL+V S
Sbjct: 653 SAANDAIETMIKILSSTKEETQAKSASALAGIFETRKDLRESSISVKTLWSVMKLLNVES 712
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E IL E+S CLA+IFLS++ENR+VAAVARDALSPL+ LA S LEVAEQATCALANLILD
Sbjct: 713 ENILAESSHCLASIFLSIKENRDVAAVARDALSPLIALANSSTLEVAEQATCALANLILD 772
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
EVS+KAI EII+PATRVL EGTISGKT AAAAIARLLHSR+ID +ITDCVN AGTVLA
Sbjct: 773 GEVSKKAIPNEIIVPATRVLREGTISGKTHAAAAIARLLHSRRIDNSITDCVNHAGTVLA 832
Query: 781 LVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFLESA G S ATSEAL ALAILSRS GASGH+KPAW VLAEFP I+PIVSSIADAT
Sbjct: 833 LVSFLESAIGRSAATSEALAALAILSRSEGASGHIKPAWAVLAEFPNHISPIVSSIADAT 892
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
PLLQDKAIEILSRLCRDQP VLG+ V ASGCI S+ARR I T+PKVKIGGAALLICAA
Sbjct: 893 PLLQDKAIEILSRLCRDQPFVLGNAVASASGCIPSVARRAIDSTSPKVKIGGAALLICAA 952
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
KV+HQR+VEDLN SNSC LIQSLVTML + SP N +DD+E ISIYR+ E
Sbjct: 953 KVSHQRVVEDLNQSNSCNHLIQSLVTMLCSADTSPSGNLVDDDREVISIYRHAKE--GES 1010
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
GES +TAVI+ NLA+WLL VLACH EK KIVIMEAGA++VLT+RIS Q++Q D+
Sbjct: 1011 GESHKATAVIYDYNLAVWLLSVLACHGEKSKIVIMEAGAVEVLTNRISSCYLQYSQSDFS 1070
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWICALLLAILFQDRDIIRAHATMK+IP LANLLKSEESANRYFAAQA+ASLVCNG
Sbjct: 1071 EDSSIWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQAIASLVCNG 1130
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+ DLL+LSEEFALV YPDQVALERLFRVEDIRV
Sbjct: 1131 SRGTLLSVANSGAAGGLISLLGCADGDISDLLELSEEFALVCYPDQVALERLFRVEDIRV 1190
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QLAKDCP NK VMVE+G LEALTKYLS
Sbjct: 1191 GATSRKAIPALVDLLKPIPDRPGAPFLALGLLNQLAKDCPPNKTVMVESGILEALTKYLS 1250
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LG QDATEEAATDLLGILFSSAEIRRHE+AF AVSQLVAVLR+GGR ARYSAAKALESLF
Sbjct: 1251 LGLQDATEEAATDLLGILFSSAEIRRHEAAFGAVSQLVAVLRMGGRAARYSAAKALESLF 1310
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNA++ARQAVQPLVEILNTGLE+EQHAAIAALVRLLSENPSRALA ADVEMNAVD
Sbjct: 1311 SADHIRNADTARQAVQPLVEILNTGLEKEQHAAIAALVRLLSENPSRALAFADVEMNAVD 1370
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRILSSNCS LKGDAAELCGVLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQ+SVV
Sbjct: 1371 VLCRILSSNCSTGLKGDAAELCGVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQYSVV 1430
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
ALDKLVDDEQLAELVAAHGAVIPLVGLLYG NYMLHEAISRALVKLGKDRP+CK+EMVK
Sbjct: 1431 CALDKLVDDEQLAELVAAHGAVIPLVGLLYGGNYMLHEAISRALVKLGKDRPACKMEMVK 1490
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIES+LDILHEAPDFLC+AFAELLRILTNNA IAKGPSAAKVV PLFLLLTR EFGPD
Sbjct: 1491 AGVIESILDILHEAPDFLCAAFAELLRILTNNASIAKGPSAAKVVGPLFLLLTRPEFGPD 1550
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRADY+LTSHQ IEPLIPLLDS APAVQQLAAELLSHLL+EE
Sbjct: 1551 GQHSALQVLVNILEHPQCRADYNLTSHQTIEPLIPLLDSQAPAVQQLAAELLSHLLMEEH 1610
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKDPVTQQVIGPLIRVL SGIHILQQRAVKALVSIAL WPNEIAKEGGV+ELSK+ILQA
Sbjct: 1611 LQKDPVTQQVIGPLIRVLSSGIHILQQRAVKALVSIALIWPNEIAKEGGVSELSKVILQA 1670
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPH LWESAASVL++ILQFSSEFYLEVPVAVLVRLLRSG E TV+G+LNALLVLESD
Sbjct: 1671 DPSLPHVLWESAASVLANILQFSSEFYLEVPVAVLVRLLRSGLESTVVGALNALLVLESD 1730
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRESKATK+AILPLSQYL
Sbjct: 1731 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRESKATKTAILPLSQYL 1790
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNEGLARS DAVSACRALVNVLEEQPTEEMKVVAICAL
Sbjct: 1791 LDPQTQAQQARLLATLALGDLFQNEGLARSTDAVSACRALVNVLEEQPTEEMKVVAICAL 1850
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDP+TSVQAAMFVKLLFSNHTIQEYASSETV
Sbjct: 1851 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFVKLLFSNHTIQEYASSETV 1910
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWATGTVNEEYLK+LNALF+NFPRLRATEPATLSIPHLVT+LKTGSEA+Q
Sbjct: 1911 RAITAAIEKDLWATGTVNEEYLKSLNALFSNFPRLRATEPATLSIPHLVTSLKTGSEASQ 1970
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALDALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1971 EAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2030
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTK+VSTGPNPE++ESF+W+FE PPKG
Sbjct: 2031 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEFDESFSWTFESPPKG 2090
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDR 2066
QKLHISCKNKSKMGK F + + DR
Sbjct: 2091 QKLHISCKNKSKMGK--FFRKSNNPDR 2115
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451471|ref|XP_004143485.1| PREDICTED: uncharacterized protein LOC101213526 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3654 bits (9475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1832/2107 (86%), Positives = 1977/2107 (93%), Gaps = 10/2107 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSSVQEKE+SLRQLLELIDTRE+AFSAVGSHSQAVPVLV
Sbjct: 27 MEDPDGTLASVAQCIEQLRQSSSSVQEKEFSLRQLLELIDTRESAFSAVGSHSQAVPVLV 86
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS+EGQIAAAKTIY
Sbjct: 87 SLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSSEGQIAAAKTIY 146
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGA+D+VGSKIFSTEGVVPVLWEQL NGLKSGNVV LLTGALRNLS+STEGFW+A
Sbjct: 147 AVSQGGARDHVGSKIFSTEGVVPVLWEQLHNGLKSGNVV-GLLTGALRNLSSSTEGFWSA 205
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+ AGG+DILV LL G+ +TQA+VCFLLA +M ED S CS+VLAA+ATK+LLKL+G GN
Sbjct: 206 TINAGGVDILVNLLATGEPNTQANVCFLLAHVMMEDASFCSKVLAAEATKKLLKLIGPGN 265
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EASVRAEAAGALKSLS CK+ARRE+A SNGIPA+INATIAPSKEFMQGEYAQALQENAM
Sbjct: 266 EASVRAEAAGALKSLSAQCKEARREVASSNGIPALINATIAPSKEFMQGEYAQALQENAM 325
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLE+CSS AQ ADTLGALASALMIYDSK E+T+ SDP+I+E
Sbjct: 326 CALANISGGLSYVISSLGQSLEACSSAAQTADTLGALASALMIYDSKEEATRASDPIIIE 385
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTLV QF R+ FLVQERTIEALASLYGNP+L++KL NS+AKRLLVGLITMATNEVQEEL
Sbjct: 386 QTLVKQFGSRVTFLVQERTIEALASLYGNPILAVKLANSDAKRLLVGLITMATNEVQEEL 445
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VRALL LCNNEGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 446 VRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 505
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS+
Sbjct: 506 TAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSS 565
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV +DI+REG
Sbjct: 566 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLNDIVREG 625
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
+AANDA+ETMIKIL+ST+EETQAKSASALAGIFE RKDLRESSIA++TL SV+KLL V S
Sbjct: 626 TAANDAIETMIKILNSTREETQAKSASALAGIFEIRKDLRESSIAIQTLLSVIKLLKVES 685
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
+ IL EASRCLAAIFLS++ENR+VAA ARD LSPLVVLA S VLEV E +TCALANL+LD
Sbjct: 686 DSILAEASRCLAAIFLSIKENRDVAAAARDVLSPLVVLAKSAVLEVTELSTCALANLLLD 745
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
SEV EKA+ EEIILPATRVL EGT+SGKT AAA IARLL SRKID++ITDCVN AGTVLA
Sbjct: 746 SEVQEKAVTEEIILPATRVLREGTMSGKTHAAAGIARLLRSRKIDHSITDCVNSAGTVLA 805
Query: 781 LVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFL SA + +V+TSEALDALAILSRS G SG +KPAW VLAEFP+SI+PIV+SI DAT
Sbjct: 806 LVSFLGSADTRTVSTSEALDALAILSRSEGVSGTMKPAWAVLAEFPQSISPIVASITDAT 865
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
P+LQDKAIE+L+RLCRDQP V+G+EV ASGCI+S++ RVI+ TN KVKIGG ALL+CAA
Sbjct: 866 PILQDKAIEVLARLCRDQPGVIGEEVVTASGCIASVSTRVINSTNIKVKIGGTALLVCAA 925
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
VNH R++EDL+ S+SC+ LIQSLV MLS ++S L NQ + DKE ISIYR +E G
Sbjct: 926 NVNHHRLLEDLHASSSCSLLIQSLVAMLSSSQSSVLDNQSDTDKEFISIYRL-PKEGSCG 984
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
E +TAV++G NLAIWLLC+LACHD + K VIMEAGA++VLT+ IS+ SQ+ Q+D+K
Sbjct: 985 TECNKATAVVYGVNLAIWLLCLLACHDGRSKTVIMEAGAVEVLTEGISNYSSQYAQIDFK 1044
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWI +LLLAILFQDRDIIRAHATMK+IP++ANLLK+EE ANRYFAAQA+ASLVCNG
Sbjct: 1045 EDSSIWISSLLLAILFQDRDIIRAHATMKSIPVIANLLKAEEPANRYFAAQAIASLVCNG 1104
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCADAD+ DLL+LSEEF LVRYP+QVALERLFRV+DIR
Sbjct: 1105 SRGTLLSVANSGAAGGLISLLGCADADIYDLLELSEEFMLVRYPEQVALERLFRVDDIRT 1164
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QLAKDCPSNKIVMVE+GALEALTKYLS
Sbjct: 1165 GATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLAKDCPSNKIVMVESGALEALTKYLS 1224
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LGPQDATEEAATDLLGILFSS+EIRRHESAF AVSQLVAVLRLGGRGARYSAAKALESLF
Sbjct: 1225 LGPQDATEEAATDLLGILFSSSEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALESLF 1284
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNAES+RQAVQPLVEIL+TG EREQHAAIAALVRLLSENPSRALAVADVEMNAVD
Sbjct: 1285 SADHIRNAESSRQAVQPLVEILSTGSEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1344
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLC+ILS+NC+M+LKGDAAELC VLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQ SVV
Sbjct: 1345 VLCKILSTNCTMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQQSVV 1404
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRN+MLHEA+SRALVKLGKDRP+CK+EMVK
Sbjct: 1405 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNFMLHEAVSRALVKLGKDRPACKMEMVK 1464
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIES+LDIL EAPDFLCSAFAELLRILTNNA IAKG SAAKVVEPLFLLLTR EFGPD
Sbjct: 1465 AGVIESILDILLEAPDFLCSAFAELLRILTNNANIAKGSSAAKVVEPLFLLLTRPEFGPD 1524
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRADY+LT HQAIEPLIPLLDSPAPAVQQLAAELLSHLL+EE
Sbjct: 1525 GQHSALQVLVNILEHPQCRADYTLTCHQAIEPLIPLLDSPAPAVQQLAAELLSHLLVEEH 1584
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKD VTQQVIGPLIRVLGSGI ILQQRAVKALVSIALTWPNEIAKEGGV+ELSK+ILQA
Sbjct: 1585 LQKDSVTQQVIGPLIRVLGSGIQILQQRAVKALVSIALTWPNEIAKEGGVSELSKVILQA 1644
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPH+LWESAA+VL+SILQFSSEFYLEVPVAVLVRLLRSG E TV+G+LNALLVLESD
Sbjct: 1645 DPSLPHSLWESAATVLASILQFSSEFYLEVPVAVLVRLLRSGLESTVVGALNALLVLESD 1704
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
D TSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRE+K TKSAI+PLSQYL
Sbjct: 1705 DATSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYL 1764
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQ RLLATLALGDLFQNE LARS DAVSACRALVNVLE+QPTEEMKVVAICAL
Sbjct: 1765 LDPQTQAQQPRLLATLALGDLFQNEALARSTDAVSACRALVNVLEDQPTEEMKVVAICAL 1824
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDP+TSVQAAMF+KLLFSNHTIQEYASSETV
Sbjct: 1825 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFIKLLFSNHTIQEYASSETV 1884
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWATGTVNEEYLKALN+LF+NFPRLRATEPATLSIPHLVT+LKTG+EATQ
Sbjct: 1885 RAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGTEATQ 1944
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALD+LFLLRQAWSACPAEVS+AQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1945 EAALDSLFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2004
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TL+VIIKRGNNMKQSVGNPSV+CKLTLGNTPPRQTK+VSTGPNPEW+E+FAWSFE PPKG
Sbjct: 2005 TLLVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDENFAWSFESPPKG 2064
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDR------VVMLGAVAGEYTLLPESKSGPSRNLEI 2093
QKLHISCKNKSKMGKSSFGKVTIQID+ VVMLGAVAGEYTLLPESKSGP RNLEI
Sbjct: 2065 QKLHISCKNKSKMGKSSFGKVTIQIDKVVMLGAVVMLGAVAGEYTLLPESKSGP-RNLEI 2123
Query: 2094 EFLWSNK 2100
EF WSNK
Sbjct: 2124 EFQWSNK 2130
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538029|ref|XP_003537507.1| PREDICTED: uncharacterized protein LOC100816765 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3645 bits (9451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1834/2104 (87%), Positives = 1980/2104 (94%), Gaps = 7/2104 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSS+QEKEYSL+QLLELID RENAFSAVGSHSQAVPVLV
Sbjct: 140 MEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLV 199
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ+AAAKTI+
Sbjct: 200 SLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIF 259
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGAKD+VGSKIFSTEGVVPVLWEQL+ GLK+GNVVDNLLTGAL+NLS+STE FW A
Sbjct: 260 AVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNA 319
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DIL+KLLT GQSST A+VCFLLACMM ED SVCS++L A+ATKQLLKLLG GN
Sbjct: 320 TIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAEATKQLLKLLGPGN 379
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+A VRAEAAGALK+LS CKDAR+EIA SNGIPA+INATIAPSKEFMQGEYAQALQENAM
Sbjct: 380 DAPVRAEAAGALKALSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAM 439
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESCSSP Q ADTLGALASALMIYD KAEST+ SDPL+VE
Sbjct: 440 CALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVE 499
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+ QFKP LPFLVQERTIEALASLY NP+LSIKL NS+AKRLLVGLITMA NEVQ+EL
Sbjct: 500 QTLLEQFKPGLPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAANEVQDEL 559
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
+++LL LCN E SLW ALQGREG+QLLISLLGLSSEQQQEC+V+LLCLLSNEND+SKWAI
Sbjct: 560 LKSLLTLCNTECSLWLALQGREGVQLLISLLGLSSEQQQECAVSLLCLLSNENDESKWAI 619
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILESGSAKAKEDSA+ILRNLC+HSEDIRACVESADAVPALLWLLKNGS
Sbjct: 620 TAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSP 679
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV+ +D+LREG
Sbjct: 680 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREG 739
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAA+DA+ TMIK+LSSTKEETQAKSASALAGIFETRKD+RESSIAVKTLWS MKLL+V S
Sbjct: 740 SAASDAIVTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVES 799
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E IL+E+SRCLAAIFLS++EN++VAA+ARDAL LV LA S VLEVAE ATCA+ANLILD
Sbjct: 800 ESILMESSRCLAAIFLSIKENKDVAAIARDALLSLVALANSSVLEVAELATCAVANLILD 859
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH-SRKIDYTITDCVNRAGTVL 779
SE++EKA+AEE+IL ATRVL EGTISGKT AAAAIARLLH R++DY +TDCVNRAGTVL
Sbjct: 860 SEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHCKRQVDYAVTDCVNRAGTVL 919
Query: 780 ALVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA 838
ALVSFL+ A G +TSEAL+ALA+LSRS H KPAW VLAEFPKSI+PIV SIAD+
Sbjct: 920 ALVSFLDFAIDGHSSTSEALEALAMLSRSDVTGAHSKPAWAVLAEFPKSISPIVLSIADS 979
Query: 839 TPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCT--NPKVKIGGAALLI 896
T +LQDKAIEILSRLC+DQP VLGD V ASGCISSIA+R+I+ T N KVKIGGAA+LI
Sbjct: 980 TSVLQDKAIEILSRLCKDQPFVLGDSVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLI 1039
Query: 897 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEA 956
CAAK+NHQR+VEDLN SN CA L+QSLV ML +A+ L NQG+D +E ISI R+T E
Sbjct: 1040 CAAKLNHQRLVEDLNRSNLCANLVQSLVDMLISSQAT-LDNQGDDSREVISICRHTKEA- 1097
Query: 957 RNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQM 1016
N G+S + TA+I G NLA+WLL VLACHDEK KI IMEAGA++VLTDRI+D SQ++Q+
Sbjct: 1098 -NDGKSNTGTAIISGANLAVWLLSVLACHDEKSKIAIMEAGAIEVLTDRIADCFSQYSQI 1156
Query: 1017 DYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLV 1076
DYKEDSS+WICALLLAILFQDRDIIRAHATMK+IP LANLLKSEESANRYFAAQ++ASLV
Sbjct: 1157 DYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLV 1216
Query: 1077 CNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVED 1136
CNGSRGTLLSVANSGAAGGLISLLGCAD+D+QDLL+LS+EF+LV YPDQVALERLFRV+D
Sbjct: 1217 CNGSRGTLLSVANSGAAGGLISLLGCADSDIQDLLELSDEFSLVHYPDQVALERLFRVDD 1276
Query: 1137 IRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTK 1196
IR+GATSRKAIPALVDLLKPIP+RPGAPFLALG L QL+ DCPSNKIVMVEAGALEAL+K
Sbjct: 1277 IRIGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLSIDCPSNKIVMVEAGALEALSK 1336
Query: 1197 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALE 1256
YLSLGPQDATEEAATDLLGILFSSAEIRRHESA AV+QLVAVLRLGGR ARY AAKALE
Sbjct: 1337 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAVGAVTQLVAVLRLGGRAARYRAAKALE 1396
Query: 1257 SLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMN 1316
SLFSADHIRNAE+ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS+ALAVADVEMN
Sbjct: 1397 SLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMN 1456
Query: 1317 AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQH 1376
AVDVLCRILSS+CSM+LKGDAAELC VLFGNTRIRST+AAARCVEPLVSLLV+EFSPA H
Sbjct: 1457 AVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHH 1516
Query: 1377 SVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436
SVVRALD+LVDDEQLAELVAAHGAVIPLVGLLYGRNY+LHEAISRALVKLGKDRP+CK+E
Sbjct: 1517 SVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKME 1576
Query: 1437 MVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1496
MVKAGVIES+LDILHEAPD+LC+AFAELLRILTNNA IAKGPSAAKVVEPLF+LLTR EF
Sbjct: 1577 MVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTREEF 1636
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
GPDGQHSALQVLVNILEHPQCRADYSLTSHQ IEPLIPLLDSP AVQQLAAELLSHLLL
Sbjct: 1637 GPDGQHSALQVLVNILEHPQCRADYSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLL 1696
Query: 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKII 1616
EE LQKDPVTQQVIGPLIRVLGSGIHILQQRA+KALVSIAL WPNEIAKEGGV E+SK+I
Sbjct: 1697 EEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAIKALVSIALIWPNEIAKEGGVIEISKVI 1756
Query: 1617 LQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVL 1676
LQ+DPS+PHALWESAASVL+SILQFSSE+YLEVPVAVLVRLLRSG E TV+G+LNALLVL
Sbjct: 1757 LQSDPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVL 1816
Query: 1677 ESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLS 1736
ESDDGTSAEAMAESGAIEALLELL SHQCEETAARLLEVLL+N KIRE+K TKSAILPLS
Sbjct: 1817 ESDDGTSAEAMAESGAIEALLELLGSHQCEETAARLLEVLLHNVKIRETKVTKSAILPLS 1876
Query: 1737 QYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAI 1796
YLLDPQTQAQQARLLATLALGDLFQNEGLAR++DAVSACRALVNVLE+QPTEEMKVVAI
Sbjct: 1877 HYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAI 1936
Query: 1797 CALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856
CALQNLVMYSRSNKRAVAEAGGVQV+LDLIGSSDPETSVQAAMF+KLLFSNHTIQEYASS
Sbjct: 1937 CALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASS 1996
Query: 1857 ETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSE 1916
ETVRAITAAIEK+LWATG+VN+EYLKALN+LF+NFPRLRATEPATLSIPHLVT+LKTGSE
Sbjct: 1997 ETVRAITAAIEKDLWATGSVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSE 2056
Query: 1917 ATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 1976
ATQEAALDALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQC
Sbjct: 2057 ATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 2116
Query: 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP 2036
LPGTLVVIIK GNNMKQSVGNPSV+CKLTLGNTPPRQTK+VSTGPNPEW+ESF WSFE P
Sbjct: 2117 LPGTLVVIIKCGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESP 2176
Query: 2037 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096
PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV+GEYTLLPESKSGPSRNLEIEF
Sbjct: 2177 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQ 2236
Query: 2097 WSNK 2100
WSNK
Sbjct: 2237 WSNK 2240
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480838|ref|XP_002276798.2| PREDICTED: uncharacterized protein LOC100264630 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3641 bits (9441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1843/2101 (87%), Positives = 1967/2101 (93%), Gaps = 2/2101 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQ+SSS QEKE+SL+QLLELI+TRENAFSAVGSHSQAVPVLV
Sbjct: 80 MEDPDGTLASVAQCIEQLRQNSSSSQEKEHSLKQLLELINTRENAFSAVGSHSQAVPVLV 139
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VK+QAA VLGSLCKENELRVKVLLGGCIPPLLGLL+SSSAEGQIAAAKTIY
Sbjct: 140 SLLRSGSLGVKMQAANVLGSLCKENELRVKVLLGGCIPPLLGLLRSSSAEGQIAAAKTIY 199
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGG +DYVGSKIFSTEGVVPVLW+QL+NGLK+GN+VDNLLTGAL+NLS STEGFWAA
Sbjct: 200 AVSQGGTRDYVGSKIFSTEGVVPVLWKQLENGLKAGNLVDNLLTGALKNLSCSTEGFWAA 259
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
TVQAGG+DILVKLL GQ+STQA+VCFLLACMM EDVSVCSRVLAA+ATKQLLKLL GN
Sbjct: 260 TVQAGGVDILVKLLKTGQASTQANVCFLLACMMMEDVSVCSRVLAAEATKQLLKLLAPGN 319
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EASVRAEAAGALKSLS K+ARREIA GIPA+INATIAPSKEFMQGE+AQALQENAM
Sbjct: 320 EASVRAEAAGALKSLSAQNKEARREIANFGGIPALINATIAPSKEFMQGEHAQALQENAM 379
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESC+SPAQ ADTLGALASALMIYDSKAEST+ SD +++E
Sbjct: 380 CALANISGGLSFVISSLGQSLESCASPAQTADTLGALASALMIYDSKAESTRASDAVVIE 439
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+NQFKP LPFLVQERTIEALASLYGNP+LS KL NS+AKRLLVGLITMA NEVQ+EL
Sbjct: 440 QTLINQFKPHLPFLVQERTIEALASLYGNPILSDKLANSDAKRLLVGLITMAANEVQDEL 499
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
VR+LL LCNN GSLWR+LQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 500 VRSLLILCNNGGSLWRSLQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 559
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+IL NLCNHSEDIRACVESADAVPALLWLLKNGS+
Sbjct: 560 TAAGGIPPLVQILETGSAKAKEDSATILGNLCNHSEDIRACVESADAVPALLWLLKNGSS 619
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSV DIL EG
Sbjct: 620 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVAPIHDILHEG 679
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAANDA+ETMIKILSST+EETQAKSAS+LAGIF RKDLRESSIA+KTLWSVMKLL+V S
Sbjct: 680 SAANDAIETMIKILSSTREETQAKSASSLAGIFNLRKDLRESSIAIKTLWSVMKLLNVES 739
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
+ ILVE+S CLA+IFLS++ENR+VAAVARDALSPL++LA S VL+VAEQATCALANL+LD
Sbjct: 740 DNILVESSCCLASIFLSIKENRDVAAVARDALSPLIILANSDVLDVAEQATCALANLLLD 799
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
EV+EKAI EEII+PATRVL EGT+SGK AAAAIARLLHSR+ DY +TDCVNRAGTVLA
Sbjct: 800 HEVAEKAIPEEIIVPATRVLHEGTVSGKAHAAAAIARLLHSRQSDYVLTDCVNRAGTVLA 859
Query: 781 LVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFLESAS GS ATSEALDALA LSRS GASG +KPAW VLAEFP ITPIV IADA
Sbjct: 860 LVSFLESASSGSFATSEALDALAFLSRSEGASGPLKPAWAVLAEFPDRITPIVFCIADAA 919
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
P+LQDKAIEILSRLCRDQP VLGD++ A+GCISSIA RVI+ N KVKIGG ALLICAA
Sbjct: 920 PMLQDKAIEILSRLCRDQPVVLGDKIACATGCISSIAMRVINSRNMKVKIGGTALLICAA 979
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
KVNHQR++EDL S+S L+QSLV+ML ++ L QG+++K+AISIYR+ EEARN
Sbjct: 980 KVNHQRVLEDLKQSSSNGHLVQSLVSMLKSPQSYSLGVQGDNEKDAISIYRHPKEEARND 1039
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
E E ST VI+G N A WLL VLACHD+K KI IMEAGA++VLTD+IS + Q+D+K
Sbjct: 1040 -ELEKSTTVIYGANTATWLLSVLACHDDKSKIAIMEAGAVEVLTDKISQCFPLYAQIDFK 1098
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSSIWICALLLAILFQDRDIIRA ATMK+IP+LANLLKSEES+NRYFAAQA+ASLVCNG
Sbjct: 1099 EDSSIWICALLLAILFQDRDIIRAPATMKSIPVLANLLKSEESSNRYFAAQAMASLVCNG 1158
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+ DLL+LSEEFALVRYP+QVALERLFRV+DIRV
Sbjct: 1159 SRGTLLSVANSGAAGGLISLLGCADVDIYDLLELSEEFALVRYPEQVALERLFRVDDIRV 1218
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG LIQLAKDCPSN IVMVE+GALEALTKYLS
Sbjct: 1219 GATSRKAIPALVDLLKPIPDRPGAPFLALGLLIQLAKDCPSNNIVMVESGALEALTKYLS 1278
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
LGPQDATEEAATDLLGILFSSAEIRRHESAF AVSQLVAVLRLGGR ARYSAAKALESLF
Sbjct: 1279 LGPQDATEEAATDLLGILFSSAEIRRHESAFGAVSQLVAVLRLGGRAARYSAAKALESLF 1338
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
S+DHIR+AESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS+ALAV DVEMNAVD
Sbjct: 1339 SSDHIRSAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVGDVEMNAVD 1398
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRILSSNCSM+LKGDAAELC VLFGNTRIRST+AAARCVEPLVSLLVTEFSPAQHSVV
Sbjct: 1399 VLCRILSSNCSMDLKGDAAELCYVLFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQHSVV 1458
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALD+L+DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEA+S+ALVKLGKDRP+CK+EMVK
Sbjct: 1459 RALDRLLDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAVSKALVKLGKDRPACKMEMVK 1518
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIESVLDILHEAPDFL AFAELLRILTNNA IAKGPSAAKVVEPLFLLLTR EF
Sbjct: 1519 AGVIESVLDILHEAPDFLSDAFAELLRILTNNATIAKGPSAAKVVEPLFLLLTRPEFVTH 1578
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQ S LQVLVNILEHPQCRADY+LTSHQAIEPLIPLLDSP+P VQQLAAELLSHLLLEE
Sbjct: 1579 GQQSTLQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPSPGVQQLAAELLSHLLLEEH 1638
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKD VTQQVIGPLIRVLGSG ILQQRAVKALVSI+L+WPNEIAKEGGV ELSK+ILQA
Sbjct: 1639 LQKDSVTQQVIGPLIRVLGSGAPILQQRAVKALVSISLSWPNEIAKEGGVVELSKVILQA 1698
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DP LPHALWESAASVL+SILQFSSE+YLEVPVAVLVRLLRSGSE TV+G+LNALLVLESD
Sbjct: 1699 DPLLPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGSETTVVGALNALLVLESD 1758
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
D TSAEAMAESGAIEALLE+LRSHQCEETAARLLEVLLNN KIRESKATKSAILPLSQYL
Sbjct: 1759 DSTSAEAMAESGAIEALLEILRSHQCEETAARLLEVLLNNVKIRESKATKSAILPLSQYL 1818
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNE LAR+ DAVSACRALVNVLE+QPTEEMKVVAICAL
Sbjct: 1819 LDPQTQAQQARLLATLALGDLFQNESLARTTDAVSACRALVNVLEDQPTEEMKVVAICAL 1878
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVM SRSNKRAVAEAGGVQVVLDLIGSSDP+TSVQAAMFVKLLFSNHTIQEYASSETV
Sbjct: 1879 QNLVMCSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFVKLLFSNHTIQEYASSETV 1938
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWATGTVNEEYLKALNALF NFPRLRATEPATLSIPHLVT+LKTGSEATQ
Sbjct: 1939 RAITAAIEKDLWATGTVNEEYLKALNALFGNFPRLRATEPATLSIPHLVTSLKTGSEATQ 1998
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALDALFLLRQAWSACPAEVS+AQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1999 EAALDALFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2058
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TL+V IKRGNNMKQSVGNPSV+CKLTL NTP RQTK+VSTGPNPEW+ESFAW+FE PPKG
Sbjct: 2059 TLLVTIKRGNNMKQSVGNPSVFCKLTLANTPARQTKVVSTGPNPEWDESFAWTFESPPKG 2118
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKL+ISCKNKSKMGKSSFGKVTIQIDRVVMLG VAGEYTLLPESKSGPSRNLEIEF WSN
Sbjct: 2119 QKLNISCKNKSKMGKSSFGKVTIQIDRVVMLGTVAGEYTLLPESKSGPSRNLEIEFQWSN 2178
Query: 2100 K 2100
K
Sbjct: 2179 K 2179
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569261|ref|XP_003552822.1| PREDICTED: uncharacterized protein LOC100818900 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3639 bits (9437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1833/2104 (87%), Positives = 1978/2104 (94%), Gaps = 7/2104 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSS+QEKEYSL+QLLELID RENAFSAVGSHSQAVPVLV
Sbjct: 64 MEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLV 123
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ+AAAKTI+
Sbjct: 124 SLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIF 183
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGGAKD+VGSKIFSTEGVVPVLWEQL+ GLK+GNVVDNLLTGAL+NLS+STE FW A
Sbjct: 184 AVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNA 243
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DIL+KLLT GQSST A+VCFLLACMM ED SVCS++L A+ TKQLLKLLG GN
Sbjct: 244 TIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAETTKQLLKLLGPGN 303
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+A VRAEAAGALKSLS CKDAR+EIA SNGIPA+INATIAPSKEFMQGEYAQALQENAM
Sbjct: 304 DAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAM 363
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESCSSP Q ADTLGALASALMIYD KAEST SDPL+VE
Sbjct: 364 CALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTWASDPLVVE 423
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+ QFKP LPFLVQERTIEALASLY NP+LSIKL NS+AKRLLVGLITMA NEVQEEL
Sbjct: 424 QTLLEQFKPHLPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAANEVQEEL 483
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
+++LL LCN E SLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLSNEND+SKWAI
Sbjct: 484 LKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 543
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILESGSAKAKEDSA+ILRNLC+HSEDIRACVESA+ VPALLWLLKNGS
Sbjct: 544 TAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESAEVVPALLWLLKNGSP 603
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL+SMLSVV+ +D+LREG
Sbjct: 604 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREG 663
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAA+DA+ TMIK+LSSTKEETQAKSASALAGIFETRKD+RESSIAVKTLWS MKLL+V S
Sbjct: 664 SAASDAIVTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVES 723
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E IL+E+SRCLAAIFLS++EN+++AA+ARDAL L LA S VLEVAE ATCA+ANLILD
Sbjct: 724 ESILMESSRCLAAIFLSIKENKDMAAIARDALPSLAALANSSVLEVAELATCAVANLILD 783
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS-RKIDYTITDCVNRAGTVL 779
SE++EKA+AEE+IL ATRVL EGTISGKT AAAAIARLLHS R++DY++TDCVNRAGTVL
Sbjct: 784 SEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHSKRQVDYSVTDCVNRAGTVL 843
Query: 780 ALVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA 838
ALVSFL+ A +TSEAL+ALA+LSRS S H KPAW VLAEFPKSI PIV SIAD+
Sbjct: 844 ALVSFLDFAIDEHSSTSEALEALAMLSRSDLTSAHSKPAWAVLAEFPKSIIPIVLSIADS 903
Query: 839 TPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCT--NPKVKIGGAALLI 896
TP+LQDKAIEILSRLC+DQP VLGD V ASGCISSIA+R+I+ T N KVKIGGAA+LI
Sbjct: 904 TPVLQDKAIEILSRLCKDQPFVLGDTVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLI 963
Query: 897 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEA 956
CAAKVNHQ++VEDLN SN CA L+QSLV ML +A+ L NQG+D +E ISI R+T E
Sbjct: 964 CAAKVNHQKLVEDLNLSNLCANLVQSLVDMLIFSQAT-LDNQGDDSREVISICRHTKEA- 1021
Query: 957 RNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQM 1016
N +S + TA+I NLAIWLL VLACHDEK KI IMEAGA++VLTDRI+D SQ++Q+
Sbjct: 1022 -NDCKSSTGTALISSANLAIWLLSVLACHDEKSKIAIMEAGAIEVLTDRIADCFSQYSQI 1080
Query: 1017 DYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLV 1076
DYKEDSS+WICALLLA+LFQDRDIIRAHATMK+IP LANLLKSEESANRYFAAQ++ASLV
Sbjct: 1081 DYKEDSSMWICALLLAVLFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLV 1140
Query: 1077 CNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVED 1136
CNGSRGTLLSVANSGAAGGLISLLGCAD+D+QDLL+LS+EF+LV YPDQVALERLFRV+D
Sbjct: 1141 CNGSRGTLLSVANSGAAGGLISLLGCADSDIQDLLELSDEFSLVHYPDQVALERLFRVDD 1200
Query: 1137 IRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTK 1196
IRVGATSRKAIPALVDLLKPIP+RPGAPFLALG L QL+ DCPSNKI+MVEAGALEAL+K
Sbjct: 1201 IRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLSIDCPSNKILMVEAGALEALSK 1260
Query: 1197 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALE 1256
YLSLGPQDATEEAATDLLGILFSSAEIRRHESAF AV+QLVAVLRLGGR ARY AAKALE
Sbjct: 1261 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALE 1320
Query: 1257 SLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMN 1316
SLFSADHIRNAE+ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS+ALAVADVEMN
Sbjct: 1321 SLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMN 1380
Query: 1317 AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQH 1376
AVDVLCRILSS+CSM+LKGDAAELC VLFGNTRIRST+AAA CVEPLVSLLV+EFSPA H
Sbjct: 1381 AVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAAHCVEPLVSLLVSEFSPAHH 1440
Query: 1377 SVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436
SVVRALD+LVDDEQLAELVAAHGAVIPLVGLLYGRN++LHEAISRALVKLGKDRP+CK+E
Sbjct: 1441 SVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNHVLHEAISRALVKLGKDRPACKME 1500
Query: 1437 MVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1496
MVKAGVIES+LDILHEAPD+LC+AFAELLRILTNNA IAKGPSAAKVVEPLF+LLTR EF
Sbjct: 1501 MVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTREEF 1560
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
GPDGQHSALQVLVNILEHPQCRADY+LT HQ IEPLIPLLDSP AVQQLAAELLSHLLL
Sbjct: 1561 GPDGQHSALQVLVNILEHPQCRADYTLTCHQVIEPLIPLLDSPISAVQQLAAELLSHLLL 1620
Query: 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKII 1616
EE LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIAL WPNEIAKEGGV E+SK+I
Sbjct: 1621 EEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVI 1680
Query: 1617 LQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVL 1676
LQ+DPS+PHALWESAASVL+SILQFSSE+YLEVPVAVLVRLLRSG E TV+G+LNALLVL
Sbjct: 1681 LQSDPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVL 1740
Query: 1677 ESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLS 1736
ESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRE+K TKSAILPLS
Sbjct: 1741 ESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLS 1800
Query: 1737 QYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAI 1796
YLLDPQTQAQQARLLATLALGDLFQNEGLAR++DAVSACRALVNVLE+QPTEEMKVVAI
Sbjct: 1801 HYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAI 1860
Query: 1797 CALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856
CALQNLVMYSRSNKRAVAEAGGVQV+LDLIGSSDPETSVQAAMF+KLLFSNHTIQEYASS
Sbjct: 1861 CALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASS 1920
Query: 1857 ETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSE 1916
ETVRAITAAIEK+LWATG+VN+EYLKALN+LF+NFPRLRATEPATLSIPHLVT+LKTGSE
Sbjct: 1921 ETVRAITAAIEKDLWATGSVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSE 1980
Query: 1917 ATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 1976
ATQEAAL+ALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQC
Sbjct: 1981 ATQEAALNALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 2040
Query: 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP 2036
LPGTLVVIIKRGNNMKQSVGNPSV+CKLTLGNTPPRQTK+VSTGPNPEW+ESF WSFE P
Sbjct: 2041 LPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESP 2100
Query: 2037 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096
PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAV+GEYTLLPESKSGPSRNLEIEF
Sbjct: 2101 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQ 2160
Query: 2097 WSNK 2100
WSNK
Sbjct: 2161 WSNK 2164
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528503|ref|XP_003532842.1| PREDICTED: uncharacterized protein LOC100794002 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3587 bits (9301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1795/2101 (85%), Positives = 1946/2101 (92%), Gaps = 3/2101 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELID RENAFSAVGSHSQAVPVLV
Sbjct: 53 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDLRENAFSAVGSHSQAVPVLV 112
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGSL VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS EGQIAAAKTIY
Sbjct: 113 SLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIY 172
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGG KD+VGSKIFSTEGVVPVLWEQLK GLK+GNVV+ LLTGAL+NLS++TEGFW A
Sbjct: 173 AVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNA 232
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T++AG +DILVKLL GQ S+ A+VC LLA +M ED SVCS+VL A+ TKQLLKLLG GN
Sbjct: 233 TIRAGAVDILVKLLATGQPSSLANVCNLLASVMVEDASVCSKVLTAEVTKQLLKLLGPGN 292
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+ SVRAEAAGAL SLS CK+ARREIA +NGIPA+INATIAPSKE+MQGE AQALQENAM
Sbjct: 293 DDSVRAEAAGALNSLSAQCKEARREIANANGIPALINATIAPSKEYMQGECAQALQENAM 352
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESC+SP Q+ADTLGALASALMIYD+KAES++ SDPL+VE
Sbjct: 353 CALANISGGLSFVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESSRASDPLVVE 412
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+ QFKPRLPFLVQERTIEALASLYGN +LS KL NS+AK LLVGLITMA NEVQ+EL
Sbjct: 413 QTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDEL 472
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
++ALL LC +EGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLS END+SKWAI
Sbjct: 473 IKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAI 532
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+IL+NLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 533 TAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSP 592
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGK+IAAKTLNHLIHKSDT TISQLTALLTSDLP+SKVYVLDAL+SMLSV S+ILREG
Sbjct: 593 NGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSEILREG 652
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SA++DA +TMI +LSSTKEETQ KSASALAGIFETRKD+RESSIAVKTL S MKLL+ S
Sbjct: 653 SASSDAFDTMIILLSSTKEETQEKSASALAGIFETRKDVRESSIAVKTLLSAMKLLNAES 712
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E IL+E+S CLAAIFLS++ENR+VAAVARD LS LV LA S VLEVAE ATCALANLILD
Sbjct: 713 ESILIESSHCLAAIFLSIKENRDVAAVARDTLSTLVALANSSVLEVAEMATCALANLILD 772
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
SE++EKAIAEE+ILPATR+LCEGTISGKT AAAAIARLLHSR +DY +TDCVNRAGTVLA
Sbjct: 773 SEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSRDVDYAVTDCVNRAGTVLA 832
Query: 781 LVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFL+SA +GSVATSEAL+ALAILSRS S ++K A VLAEFPKSI+PIV I D+
Sbjct: 833 LVSFLDSAVNGSVATSEALEALAILSRSEETSANIKSACAVLAEFPKSISPIVLCIVDSE 892
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
P LQDK IEILSRLC+DQP VLGD + A GCISSIA+R+IS T+ K KIGGAALLIC A
Sbjct: 893 PTLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTDVKAKIGGAALLICTA 952
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
K NHQR+VEDL+ SN CA LI+SLV ML+ + S L +D+KE ISI RYT EEA NG
Sbjct: 953 KANHQRLVEDLHSSNLCADLIRSLVDMLTSAQPS-LGYLDDDNKEFISICRYTREEA-NG 1010
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
ES +ST++I G +LAIWLL +LACHDEK KI IMEAGA+DVL DRIS+ SQ++Q++YK
Sbjct: 1011 CESNTSTSIICGADLAIWLLSILACHDEKNKIAIMEAGAIDVLIDRISNCFSQYSQIEYK 1070
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSS+WI ALLLAILFQ+RDIIRAH T+K++P L +LLKSEESAN+YFAAQ++ASLVCNG
Sbjct: 1071 EDSSMWIHALLLAILFQNRDIIRAHPTIKSVPALTSLLKSEESANKYFAAQSIASLVCNG 1130
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+QDLL+LSEEF+LVRYPDQVALERLFRV+DIRV
Sbjct: 1131 SRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRV 1190
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QL KDCPSN VMVE+GALEALTKYLS
Sbjct: 1191 GATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNMSVMVESGALEALTKYLS 1250
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
L PQDATEEAATDLLGILFSSAEIR+HESA+ AV+QLVAVLRLGGRGARYSAAKALESLF
Sbjct: 1251 LSPQDATEEAATDLLGILFSSAEIRKHESAYGAVAQLVAVLRLGGRGARYSAAKALESLF 1310
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNAE ARQAVQPLVEIL+TG E+EQHAAIAALV LLSENPSRALAVADVEMNAV+
Sbjct: 1311 SADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVE 1370
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRI+SSNCS++LKGDAAELC LFGNTRIRST AAA CVEPLVSLLVT+FSPAQ SVV
Sbjct: 1371 VLCRIISSNCSIDLKGDAAELCCALFGNTRIRSTAAAACCVEPLVSLLVTQFSPAQLSVV 1430
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALD+LVDDEQLAELVAAHGAV+PLVGLL GRNY+LHEAISRALVKLGKDRP+CK+EMVK
Sbjct: 1431 RALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYILHEAISRALVKLGKDRPACKVEMVK 1490
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
GVIESVLDILHE PD+LC+AFAELLRILTNNA IAKGPSAAKVVEPLFLLLTR EFGPD
Sbjct: 1491 VGVIESVLDILHEGPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPD 1550
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRAD+SLTS Q IEPLI LLDSP AVQQLAAELLSHLL+EE+
Sbjct: 1551 GQHSALQVLVNILEHPQCRADHSLTSRQVIEPLIHLLDSPISAVQQLAAELLSHLLVEER 1610
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKDPVTQQ IGPL+RVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGV E+SK+ILQA
Sbjct: 1611 LQKDPVTQQAIGPLVRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQA 1670
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPHALWESAASVLSSILQFSSEFYLEVP+AVLVRLLRSGS+ TV+G+LNALLVLE+D
Sbjct: 1671 DPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSDSTVVGALNALLVLEND 1730
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
DGTSAEAMAESGAIEALLELLRSHQCEE AARLLEVLLNN KIRE+K TKSAI+PLSQYL
Sbjct: 1731 DGTSAEAMAESGAIEALLELLRSHQCEEIAARLLEVLLNNVKIRETKVTKSAIVPLSQYL 1790
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNE LAR++DAVSACRALVNVLEEQPTEEMKVVAICAL
Sbjct: 1791 LDPQTQAQQARLLATLALGDLFQNEALARTSDAVSACRALVNVLEEQPTEEMKVVAICAL 1850
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSN+RAVAEAGGVQVVLDLIGSSDPETS+QAAMFVKLLFSN+TIQEYASSETV
Sbjct: 1851 QNLVMYSRSNRRAVAEAGGVQVVLDLIGSSDPETSIQAAMFVKLLFSNNTIQEYASSETV 1910
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWA+GTVN+EYLKALN+LF NFPRLRATEPATLSIPHLVTALKTGSEA Q
Sbjct: 1911 RAITAAIEKDLWASGTVNDEYLKALNSLFTNFPRLRATEPATLSIPHLVTALKTGSEACQ 1970
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALDALFLLRQAWSACPAEVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1971 EAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2030
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQT++VSTGPNPEW ESF+W+FE PPKG
Sbjct: 2031 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWGESFSWTFESPPKG 2090
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKLHISCKNKSK+GKS FGKVTIQIDRVVMLG+VAGEY LLP+SKSGP RNLEIEF WSN
Sbjct: 2091 QKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSN 2150
Query: 2100 K 2100
K
Sbjct: 2151 K 2151
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511119|ref|XP_003524277.1| PREDICTED: uncharacterized protein LOC100807370 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3581 bits (9287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1796/2101 (85%), Positives = 1938/2101 (92%), Gaps = 3/2101 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELID RENAF AVGSHSQAVPVLV
Sbjct: 53 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDLRENAFGAVGSHSQAVPVLV 112
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSGS VKIQAATVLGSLCKENELRVKVLLGG IPPLLGLLKSSS EGQIAAAKTIY
Sbjct: 113 SLLRSGSFNVKIQAATVLGSLCKENELRVKVLLGGSIPPLLGLLKSSSTEGQIAAAKTIY 172
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVSQGG KD+VGSKIFSTEGVVPVLW QLK GLK+GNVV+ LLTGAL+NLS++TEGFW A
Sbjct: 173 AVSQGGVKDHVGSKIFSTEGVVPVLWVQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNA 232
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T+QAGG+DILVKLL +GQ S+ A+VC LLA +M ED SVCS+VL A+ TKQLL LLG GN
Sbjct: 233 TIQAGGVDILVKLLAMGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLNLLGPGN 292
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+ SVRAEAAGAL SLS CK+ARREIA +NGIPA+INATIAPSKE+MQGE AQALQENAM
Sbjct: 293 DDSVRAEAAGALNSLSAQCKEARREIANANGIPALINATIAPSKEYMQGECAQALQENAM 352
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VISSLGQSLESC+SP Q+ADTLGALASALMIYD+KAEST+ SDPL+VE
Sbjct: 353 CALANISGGLSFVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVE 412
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+ QFKPRLPFLVQERTIEALASLYGN +LS KL NS+AK LLVGLITMA NEVQ+EL
Sbjct: 413 QTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDEL 472
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
++ALL LC +EGSLWRALQGREG+QLLISLLGLSSEQQQEC+VALLCLLS END+SKWAI
Sbjct: 473 IKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAI 532
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKAKEDSA+IL+NLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 533 TAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSP 592
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGK+IAAKTLNHLIHKSDT TISQLTALLTSDLP+SKVYVLDAL+SMLSV S+ILREG
Sbjct: 593 NGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSEILREG 652
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAA+DA +TMI +LSSTKEETQAKSASALAGIFETRKD+RESSIAVK L S MKLL+ S
Sbjct: 653 SAASDAFDTMIILLSSTKEETQAKSASALAGIFETRKDVRESSIAVKILLSAMKLLNAES 712
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E IL+E+S CLAAIFLS++ENR+VA VARD LS LV LA S VLEVAE A CALANLILD
Sbjct: 713 ESILIESSHCLAAIFLSIKENRDVAVVARDTLSTLVALANSSVLEVAEMAMCALANLILD 772
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
SE++EKAIAEE+ILPATR+LCEGTISGKT AAAAIARLLHS+ +DY +TDCVNRAGTVLA
Sbjct: 773 SEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSQDVDYGVTDCVNRAGTVLA 832
Query: 781 LVSFLESA-SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LVSFL+SA +GSVATSEAL+ALAILSRS S ++K A VLAEFPKSI+PIV I D+
Sbjct: 833 LVSFLDSAVNGSVATSEALEALAILSRSEETSANIKSACAVLAEFPKSISPIVLCIVDSE 892
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
P+LQDK IEILSRLC+DQP VLGD + A GCISSIA+R+IS TN KVKIGGAALLIC A
Sbjct: 893 PMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTA 952
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959
K NHQR+VEDLN SN CA LI+SLV ML+ + S L D KE ISI RYT EEA NG
Sbjct: 953 KANHQRLVEDLNSSNLCANLIRSLVDMLTSAQPS-LGYLDGDKKEFISICRYTREEA-NG 1010
Query: 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYK 1019
ES +ST++I G +LAIWLL +LACH EK KI IMEAGA+DVL DRIS+ SQ++Q+DY
Sbjct: 1011 CESNTSTSIICGADLAIWLLSILACHGEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYN 1070
Query: 1020 EDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNG 1079
EDSS+WI ALLLAILFQ+RDIIRAH T+K++P L +LLKSEESAN+YFAAQ++ASLVCNG
Sbjct: 1071 EDSSMWIHALLLAILFQNRDIIRAHPTIKSVPALTSLLKSEESANKYFAAQSIASLVCNG 1130
Query: 1080 SRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRV 1139
SRGTLLSVANSGAAGGLISLLGCAD D+QDLL+LSEEF+LVRYPDQVALERLFRV+DIR
Sbjct: 1131 SRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRG 1190
Query: 1140 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199
GATSRKAIPALVDLLKPIPDRPGAPFLALG L QL KDCPSN VMVE+GALEALTKYLS
Sbjct: 1191 GATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNMSVMVESGALEALTKYLS 1250
Query: 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLF 1259
L PQDATEEAATDLLGILFSSAEIR+HESA+ AV+QLVAVLRLGGRGARYSAAKALESLF
Sbjct: 1251 LSPQDATEEAATDLLGILFSSAEIRKHESAYGAVAQLVAVLRLGGRGARYSAAKALESLF 1310
Query: 1260 SADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1319
SADHIRNAE ARQAVQPLVEIL+TG E+EQHAAIAALV LLSENPSRALAVADVEMNAV+
Sbjct: 1311 SADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVE 1370
Query: 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
VLCRI+SSNCSM+LKGDAAELC LFGNTRIRST AAA CVEPLVSLLVTE SPAQ SVV
Sbjct: 1371 VLCRIISSNCSMDLKGDAAELCCALFGNTRIRSTAAAACCVEPLVSLLVTELSPAQLSVV 1430
Query: 1380 RALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
RALD+LVDDEQLAELVAAHGAV+PLVGLL GRNY+LHEAISRALVKLGKDRP+CK+EMVK
Sbjct: 1431 RALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYILHEAISRALVKLGKDRPACKMEMVK 1490
Query: 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPD 1499
AGVIESVLDILHEAPD+LC+AFAELLRILTNNA IAKG SAAKVVEPLFLLLTR EFGPD
Sbjct: 1491 AGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGSSAAKVVEPLFLLLTRQEFGPD 1550
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
GQHSALQVLVNILEHPQCRAD+SLTS Q IEPLI LLDSP AVQQLAAELLSHLL+EE+
Sbjct: 1551 GQHSALQVLVNILEHPQCRADHSLTSRQVIEPLIHLLDSPISAVQQLAAELLSHLLVEER 1610
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
LQKDPVTQQ IGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGV E+SK+ILQA
Sbjct: 1611 LQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQA 1670
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
DPSLPHALWESAASVLSSILQFSSEFYLEVP+AVLVRLLRSGSE TV+G+LNALLVLE+D
Sbjct: 1671 DPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLEND 1730
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNN KIRE+K TKSAI+PLSQYL
Sbjct: 1731 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYL 1790
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
LDPQTQAQQARLLATLALGDLFQNE LAR++DAVSACRALVNVLEEQPTEEMKVVAICAL
Sbjct: 1791 LDPQTQAQQARLLATLALGDLFQNEALARTSDAVSACRALVNVLEEQPTEEMKVVAICAL 1850
Query: 1800 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
QNLVMYSRSN+RAVAEAGGVQVVLDLIGSSDPETS+QAAMFVKLLFSN+TIQEYASSETV
Sbjct: 1851 QNLVMYSRSNRRAVAEAGGVQVVLDLIGSSDPETSIQAAMFVKLLFSNNTIQEYASSETV 1910
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919
RAITAAIEK+LWA+GTVN+EYLKALN+LF NFPRLRATEPATLSIPHLVTALKTGSEA Q
Sbjct: 1911 RAITAAIEKDLWASGTVNDEYLKALNSLFTNFPRLRATEPATLSIPHLVTALKTGSEACQ 1970
Query: 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 1979
EAALDALFLLRQAWSACP EVS+AQS+AAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG
Sbjct: 1971 EAALDALFLLRQAWSACPVEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPG 2030
Query: 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG 2039
TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQT++VSTGPNPEW ESF+W+FE PPKG
Sbjct: 2031 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWGESFSWTFESPPKG 2090
Query: 2040 QKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSN 2099
QKLHISCKNKSK+GKS FGKVTIQIDRVVMLG+VAGEY LLP+SKSGP RNLEIEF WSN
Sbjct: 2091 QKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSN 2150
Query: 2100 K 2100
K
Sbjct: 2151 K 2151
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2100 | ||||||
| TAIR|locus:2827868 | 2150 | CSI1 "cellulose synthase-inter | 0.994 | 0.971 | 0.788 | 0.0 | |
| TAIR|locus:2204700 | 2136 | AT1G77460 "AT1G77460" [Arabido | 0.997 | 0.980 | 0.451 | 0.0 | |
| TAIR|locus:2205866 | 2114 | AT1G44120 [Arabidopsis thalian | 0.994 | 0.987 | 0.375 | 0.0 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.12 | 0.401 | 0.305 | 2.4e-11 | |
| UNIPROTKB|E1C8F9 | 876 | E1C8F9 "Uncharacterized protei | 0.154 | 0.369 | 0.261 | 2.6e-06 | |
| MGI|MGI:1918132 | 881 | Armc3 "armadillo repeat contai | 0.153 | 0.365 | 0.257 | 2.2e-05 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.111 | 0.383 | 0.290 | 9.6e-10 | |
| ASPGD|ASPL0000008980 | 579 | AN12408 [Emericella nidulans ( | 0.197 | 0.715 | 0.229 | 4.9e-09 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.098 | 0.327 | 0.301 | 2.5e-08 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.181 | 0.460 | 0.219 | 7.8e-08 |
| TAIR|locus:2827868 CSI1 "cellulose synthase-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 8164 (2878.9 bits), Expect = 0., P = 0.
Identities = 1664/2109 (78%), Positives = 1825/2109 (86%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
MEDPDGTLASVAQCIEQLRQ SSS QE+EY L+QLL+LI+ RENAFSAVGSHSQAVPVLV
Sbjct: 53 MEDPDGTLASVAQCIEQLRQGSSSAQEREYCLKQLLDLIEMRENAFSAVGSHSQAVPVLV 112
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVXXXXXXXXXXXXXKSSSAEGQIAAAKTIY 120
SLLRSGS+ VKIQAATVLGSLCKENELRVKV KSSS EGQIAAAKTIY
Sbjct: 113 SLLRSGSVGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSVEGQIAAAKTIY 172
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVS+GG KD+VGSKIFSTEGVVPVLW+QL++G K G V D LLTGAL+NLS++TEGFW+
Sbjct: 173 AVSEGGVKDHVGSKIFSTEGVVPVLWDQLRSGNKKGEV-DGLLTGALKNLSSTTEGFWSE 231
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T++AGG+D+LVKLLT GQSST ++VCFLLACMM ED SVCS VL AD TKQLLKLLGSGN
Sbjct: 232 TIRAGGVDVLVKLLTSGQSSTLSNVCFLLACMMMEDASVCSSVLTADITKQLLKLLGSGN 291
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
EA VRAEAA ALKSLS K+A+REIA SNGIP +INATIAPSKEFMQGEYAQALQENAM
Sbjct: 292 EAPVRAEAAAALKSLSAQSKEAKREIANSNGIPVLINATIAPSKEFMQGEYAQALQENAM 351
Query: 301 CALANISGGLSNVIXXXXXXXXXXXXPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
CALANISGGLS VI PAQ ADTLGALASALMIYD KAE+T+ SDPL+VE
Sbjct: 352 CALANISGGLSYVISSLGQSLESCSSPAQTADTLGALASALMIYDGKAETTRASDPLVVE 411
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
QTL+ QFKPRLPFLVQERTIEALASLYGN +LS+KL NS+AKRLLVGLITMA NEVQ+EL
Sbjct: 412 QTLLKQFKPRLPFLVQERTIEALASLYGNSILSVKLSNSDAKRLLVGLITMAVNEVQDEL 471
Query: 421 VRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNENDDSKWAI 480
V+ALL LCN+EGSLW+ALQGR C+VALLCLLSNEND+SKWAI
Sbjct: 472 VKALLMLCNHEGSLWQALQGREGIQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAI 531
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQILE+GSAKA+EDSA+ILRNLCNHSEDIRACVESADAVPALLWLLKNGS
Sbjct: 532 TAAGGIPPLVQILETGSAKAREDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSP 591
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESK+YVLDALKSMLSVV F+D+LREG
Sbjct: 592 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKIYVLDALKSMLSVVPFNDMLREG 651
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SA+NDA+ETMIK++SS KEETQA SASALA IF++RKDLRES++A+KTL S +KLL+V S
Sbjct: 652 SASNDAIETMIKLMSSGKEETQANSASALAAIFQSRKDLRESALALKTLLSAIKLLNVDS 711
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E ILVE+ RCLAAI LS++ENR+VA AR+AL +V LA S VLEVAEQ CALANLILD
Sbjct: 712 ERILVESCRCLAAILLSIKENRDVAISAREALPTIVSLANSSVLEVAEQGMCALANLILD 771
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
SEVSEK I E+IIL ATR+L EGT+SGKTLAAAAIARLL R+ID +TD VNRAGTVL
Sbjct: 772 SEVSEKVIVEDIILSATRILREGTVSGKTLAAAAIARLLSRRRIDSALTDSVNRAGTVLT 831
Query: 781 LVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD-A 838
LVS LESA G S A SEALDALAI SRSG A+G+VKPAW VLAE P S+ PIVSSI A
Sbjct: 832 LVSLLESADGRSDAISEALDALAIFSRSG-ANGNVKPAWAVLAESPNSMAPIVSSIVSVA 890
Query: 839 TPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICA 898
P LQDKAIE+LSRLCRDQP VLG+ V A C+SSIA+RVI+ +PK+KIGGAA++ICA
Sbjct: 891 NPSLQDKAIEVLSRLCRDQPIVLGNMVNNARDCVSSIAKRVINTRDPKIKIGGAAIIICA 950
Query: 899 AKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSE---- 954
AKV+ Q+++E+LN + CA +Q+LV +L V+ +Q D+K+ I I + E
Sbjct: 951 AKVDDQKMIENLNETQLCAKFVQALVGILDSVQ-----DQEKDEKDKICICIHPKEKEED 1005
Query: 955 ---EARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLS 1011
EA E + VI G+NLAIWLL VL+CHDEK + VI+E+ ++++TDRI +
Sbjct: 1006 EEEEATENREGSTGATVISGDNLAIWLLSVLSCHDEKSRAVILESEGIELITDRIGN--- 1062
Query: 1012 QFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQA 1071
+F Q D ED++IW+CALLLAILFQDR+I RAHATMKA+P+L+NL+KSEE A+RYFAAQA
Sbjct: 1063 RFLQADNGEDANIWVCALLLAILFQDREITRAHATMKAVPVLSNLVKSEEYADRYFAAQA 1122
Query: 1072 VASLVCNGSRGTLLSVXXXXXXXXXXXXXXXXDADVQDLLDLSEEFALVRYPDQVALERL 1131
+ASLVCNGSRGTLLSV D D+++LL LS+EF LVRYPDQVALERL
Sbjct: 1123 LASLVCNGSRGTLLSVANSGAAAGFISLLGCSDDDIKELLQLSQEFTLVRYPDQVALERL 1182
Query: 1132 FRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGAL 1191
FRVEDIRVGATSRKAIP LV+LLKPIPDRPGAP L+L L QLA DCP N IVMVE+GAL
Sbjct: 1183 FRVEDIRVGATSRKAIPLLVELLKPIPDRPGAPLLSLNLLTQLAGDCPQNMIVMVESGAL 1242
Query: 1192 EALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSA 1251
E L+KYLSLGPQD EEAAT LLGILFSSAEIRRHESAF AVSQLVAVLRLGGRGARYSA
Sbjct: 1243 EGLSKYLSLGPQDEQEEAATGLLGILFSSAEIRRHESAFGAVSQLVAVLRLGGRGARYSA 1302
Query: 1252 AKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVA 1311
AKAL+SLF+ADHIRNAES+RQAVQPLVEILNTG EREQHAAIAALVRLLS+NPSRALAVA
Sbjct: 1303 AKALDSLFTADHIRNAESSRQAVQPLVEILNTGSEREQHAAIAALVRLLSDNPSRALAVA 1362
Query: 1312 DVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEF 1371
DVEMNAVDVLCRILSSN +MELKGDAAELC VLF NTRIRSTVAAARCVEPLVSLLVTEF
Sbjct: 1363 DVEMNAVDVLCRILSSNYTMELKGDAAELCYVLFANTRIRSTVAAARCVEPLVSLLVTEF 1422
Query: 1372 SPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1431
SPAQHSVVRALDKLVDDEQLAELVAAHGAV+PLVGLLYG+NY+LHEAISRALVKLGKDRP
Sbjct: 1423 SPAQHSVVRALDKLVDDEQLAELVAAHGAVVPLVGLLYGKNYVLHEAISRALVKLGKDRP 1482
Query: 1432 SCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLL 1491
+CKLEMVKAGVI+ VLDILHEAPDFLC+AF+ELLRILTNNA IAKG SAAKVVEPLF LL
Sbjct: 1483 ACKLEMVKAGVIDCVLDILHEAPDFLCAAFSELLRILTNNATIAKGQSAAKVVEPLFHLL 1542
Query: 1492 TRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVXXXXXXXX 1551
TR EFG DGQHSALQVLVNILEHPQCRADY+LT HQ IEPLIPLL+SP+PAV
Sbjct: 1543 TRLEFGADGQHSALQVLVNILEHPQCRADYTLTPHQVIEPLIPLLESPSPAVQQLAAELL 1602
Query: 1552 XXXXXXXXXXKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTE 1611
KDP+TQ IGPLI VLGSGIH+LQQRAVKALVSIALTWPNEIAKEGGV+E
Sbjct: 1603 SHLLYEEHLQKDPLTQLAIGPLIHVLGSGIHLLQQRAVKALVSIALTWPNEIAKEGGVSE 1662
Query: 1612 LSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLN 1671
LSK+ILQADPSL + LWESAAS+L ILQFSSEFYLEVPVAVLVRLLRS SE TV+G+LN
Sbjct: 1663 LSKVILQADPSLSNVLWESAASILVIILQFSSEFYLEVPVAVLVRLLRSASENTVVGALN 1722
Query: 1672 ALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSA 1731
ALLVLESDDGTSAE+MAESGAIEALL+LLRSHQCE+TAARLLEVLLNN KIR+SKATK+A
Sbjct: 1723 ALLVLESDDGTSAESMAESGAIEALLDLLRSHQCEDTAARLLEVLLNNVKIRDSKATKTA 1782
Query: 1732 ILPLSQYLLDPXXXXXXXXXXXXXXXGDLFQNEGLARSADAVSACRALVNVLEEQPTEEM 1791
ILPLSQYLLDP GDLFQNE LARS DA SACRALVNVLEEQPTEEM
Sbjct: 1783 ILPLSQYLLDPQTQAQQARLLATLALGDLFQNEALARSTDAASACRALVNVLEEQPTEEM 1842
Query: 1792 KVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQ 1851
KVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLI SSDPETSVQAAMFVKLLFSNHT+Q
Sbjct: 1843 KVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLISSSDPETSVQAAMFVKLLFSNHTVQ 1902
Query: 1852 EYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTAL 1911
EYASSETVRAITAAIEK+LWATGTVN+EYLKALN+LFNNFPRLRATEPATLSIPHLVT+L
Sbjct: 1903 EYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFNNFPRLRATEPATLSIPHLVTSL 1962
Query: 1912 KTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAE 1971
KTGSEATQEAALDALFLLRQAWSACPAEVS+AQSVAAADAIPLLQYLIQSGPPRFQEKAE
Sbjct: 1963 KTGSEATQEAALDALFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAE 2022
Query: 1972 FLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAW 2031
FLLQCLPGTLVV IKRGNNMKQSVGNPSV+CK+TLGN PPRQTK++STGPNPEW+ESF+W
Sbjct: 2023 FLLQCLPGTLVVTIKRGNNMKQSVGNPSVFCKITLGNNPPRQTKVISTGPNPEWDESFSW 2082
Query: 2032 SFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNL 2091
SFE PPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEY+LLPESKSGP RNL
Sbjct: 2083 SFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYSLLPESKSGP-RNL 2141
Query: 2092 EIEFLWSNK 2100
EIEF WSNK
Sbjct: 2142 EIEFQWSNK 2150
|
|
| TAIR|locus:2204700 AT1G77460 "AT1G77460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4482 (1582.8 bits), Expect = 0., P = 0.
Identities = 951/2107 (45%), Positives = 1362/2107 (64%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
M+DP+ +A+VAQ IEQL +SS Q+KE + +LL + + A +GS+ QA+P+ +
Sbjct: 29 MDDPEKAMATVAQLIEQLHAKTSSPQDKELTTARLLGIAKGKREARRLIGSYGQAMPLFI 88
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVXXXXXXXXXXXXXKSSSAEGQIAAAKTIY 120
S+LR+G+ K+ A++L LCK+ +LR+KV KS + E + AAA+ IY
Sbjct: 89 SMLRNGTTLAKVNVASILCVLCKDKDLRLKVLLGGCIPPLLSVLKSGTMETRKAAAEAIY 148
Query: 121 AVSQGG-AKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWA 179
VS G + D++G KIF TEGVVP LW+QL VV+ +TGALRNL +G+W
Sbjct: 149 EVSSAGISNDHIGMKIFITEGVVPTLWDQLSLKGNQDKVVEGYVTGALRNLCGVDDGYWR 208
Query: 180 ATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG 239
T++ G+DI+V LL+ ++QA+ LLA ++ ++L + K L++LL
Sbjct: 209 LTLEGSGVDIVVSLLSSDNPNSQANAASLLARLVLSFCDSIQKILNSGVVKSLIQLLEQK 268
Query: 240 NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENA 299
N+ +VRA AA AL++LS + +A++ + + G+ A+I A +APSKE MQG++ Q+LQE+A
Sbjct: 269 NDINVRASAADALEALSANSDEAKKCVKDAGGVHALIEAIVAPSKECMQGKHGQSLQEHA 328
Query: 300 MCALANISGGLSNVIXXXXXXXXXXXXPAQVADTLGALASALMIYDSKAESTKPSDPLIV 359
ALAN+ GG+ ++I + D +GALA ALMI+ S DP ++
Sbjct: 329 TGALANVFGGMRHLIIYLGQVSQSPRLTEPIGDVIGALAYALMIFKQPESSENIFDPSVI 388
Query: 360 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEE 419
E LV KPR L+QER +EA+ASLYGN LS L+++EAKR+L+ LITMA+ +V+E
Sbjct: 389 ESILVKLLKPRDTKLIQERILEAMASLYGNSSLSCYLDDAEAKRVLIALITMASADVRER 448
Query: 420 LVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNENDDSKWA 479
L+ L LC+++ +W A+ R +V +L +L+ + DDSKWA
Sbjct: 449 LIICLSGLCHDKVGIWEAIGKREGIQLFISFLGLSSEQHQEYAVEMLKILTAQVDDSKWA 508
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
+TAAGGIPPLVQ+LE+GS KAKED+A IL NLC HSE+IR CVE A +PA LWLLK G
Sbjct: 509 VTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDCVERAGGIPAFLWLLKTGG 568
Query: 540 ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599
N +E +AKTL L+H +D ATI+QL ALL D P SK+ V++ L +LS S D++
Sbjct: 569 PNSQETSAKTLVKLVHTADPATINQLLALLLGDDPTSKIQVIEVLGHVLSKASQEDLVHR 628
Query: 600 GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 659
G AAN + ++++ L+S++EET+ +AS LA +F +R+D+ + +KLL
Sbjct: 629 GCAANKGLRSLVESLTSSREETKEHTASVLADLFSSRQDICGHLATDDIINPWIKLLTNN 688
Query: 660 SECILVEASRCLAAIFLSVREN--REVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717
++ + + +R L A+ V+ N ++ + +A + L+ LA + +E AE A ALANL
Sbjct: 689 TQNVAKQVARALDALSRPVKNNNNKKKSYIAEGDIKSLIKLAKNSSIESAENAVSALANL 748
Query: 718 ILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGT 777
+ D +++ +A+AE+++ TR+L +G+ GK A+ A+ +LL + + +
Sbjct: 749 LSDPDIAAEALAEDVVSAFTRILADGSPEGKRNASRALHQLLKNFPVCDVLKGSAQCRFA 808
Query: 778 VLALVSFLESASGSVATS-EALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA 836
+L+LV L+S A + L+ +A+L+++ P W LAE P S+ +V +A
Sbjct: 809 ILSLVDSLKSIDVDSADAFNILEVVALLAKTKSGVNFSYPPWIALAEVPSSLETLVQCLA 868
Query: 837 DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLI 896
+ L+QDKAIE+LSRLC DQ +L + + + +A R+++ ++ +V++G ALL+
Sbjct: 869 EGHTLVQDKAIEVLSRLCSDQQFLLSELIVSRPKSMLVLADRIVNASSLEVRVGSTALLL 928
Query: 897 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEAS-PLRNQGNDDKEAISIYRYTSEE 955
CAAK Q I E L+ S L+ +LV M+ S L + K + + ++
Sbjct: 929 CAAKEKKQLITETLDQSGFLKLLLHALVDMIKHNSTSFSLETEVQTPKGFLE--KNVFQD 986
Query: 956 ARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQ 1015
G A I G +A+WLLC+L D K K+++MEAG ++VL +++ S Q
Sbjct: 987 T--GSFYFPDPAKILGGTVALWLLCILTSVDAKSKVIVMEAGGLEVLVGKLARYTSS-AQ 1043
Query: 1016 MDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASL 1075
++++ IWI ALLLAI+FQD ++ + TM+ IP LA LL S+E +RYFAA A+ASL
Sbjct: 1044 AEFEDTEGIWISALLLAIMFQDDNVSFSSTTMRIIPTLAVLLGSDELIDRYFAAHAMASL 1103
Query: 1076 VCNGSRGTLLSVXXXXXXXXXXXXXXXXDADVQDLLDLSEEFALVRYPDQVALERLFRVE 1135
VC +RG L++ ++++ +L+ L+ EF+LV+ PDQV L+ LF +E
Sbjct: 1104 VCTRNRGINLTIANSGAVSGIINLLGYVESEILNLVALANEFSLVKEPDQVILQHLFEIE 1163
Query: 1136 DIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALT 1195
D+R+G+T+RK+IP LVDLL+PIPDRPGAP A+ LI++A +NK++M EAGA+EALT
Sbjct: 1164 DVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQILIRIADGSDTNKLLMAEAGAVEALT 1223
Query: 1196 KYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKAL 1255
KYLSL PQD+TE A ++LL +LFS+ E+R++E A ++++QL+AVLRLG R ARYSAA AL
Sbjct: 1224 KYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALSSLNQLIAVLRLGSRSARYSAAGAL 1283
Query: 1256 ESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEM 1315
LF A++IRN+E A QAVQPL++IL + E EQ A++AL++L S N S + DVE
Sbjct: 1284 NELFDAENIRNSEIACQAVQPLMDILGSVSESEQEVALSALIKLSSGNTSNTALLIDVEG 1343
Query: 1316 NAVDVLCRILSS-NCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPA 1374
+ ++ + +ILSS S ELK +AA LC V+F N IR++ +A+ C++PL++L+ +E S A
Sbjct: 1344 SLLENVIKILSSATASEELKINAARLCSVVFSNKNIRTSASASGCMKPLITLMQSERSAA 1403
Query: 1375 QHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434
+ V A+ L+DDEQ EL AAH LVGL+ G+NY++ EA AL+KLGKDR K
Sbjct: 1404 VEAAVFAIKILLDDEQHLELAAAHNIQELLVGLVSGKNYVIIEASLSALIKLGKDRVPRK 1463
Query: 1435 LEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRS 1494
L+MV+AG+IE L++L A LCSA EL RILTN+ IA+ P AK VEPLF +L RS
Sbjct: 1464 LDMVEAGIIERCLELLPGASSSLCSAVVELFRILTNSGVIARRPDVAKTVEPLFAVLLRS 1523
Query: 1495 EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVXXXXXXXXXXX 1554
+ GQHSALQ LVNILE Q +S T +AI PLI L+S + A+
Sbjct: 1524 DLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIVPLISFLESSSQAIQQLGAELLSHF 1583
Query: 1555 XXXXXXXKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSK 1614
+D TQ + PL+R+ G GI LQ+ A+KAL I+ +WP + G+ ELSK
Sbjct: 1584 LTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIKALEKISASWPKAVLDAEGIFELSK 1643
Query: 1615 IILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALL 1674
+ILQ DP P LWESAA VLS+ILQ+ +E + V + VLV+LL S E TV+ +L AL+
Sbjct: 1644 VILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVELPVLVKLLFSTIESTVLLALKALM 1703
Query: 1675 VLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILP 1734
+ E +D +S MAE GAI+ALL+LLRSHQCEE + LLEV+ NN ++RE K K AI P
Sbjct: 1704 LHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESGSLLEVIFNNPRVRELKLCKYAIAP 1763
Query: 1735 LSQYLLDPXXXXXXXXXXXXXXXGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVV 1794
LSQYLLDP GDL Q+EGL+RS+ +VSACRAL++VLEEQPTEEMKVV
Sbjct: 1764 LSQYLLDPHTRSEPGRLLAALALGDLSQHEGLSRSSGSVSACRALISVLEEQPTEEMKVV 1823
Query: 1795 AICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYA 1854
AICALQN VM SR+N+RAVAEAGGV ++ +L+ S +PE S QAA+ VK LFSNHT+QEY
Sbjct: 1824 AICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCNPEVSGQAALMVKFLFSNHTLQEYV 1883
Query: 1855 SSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTG 1914
S+E +R++TAA+E+ LW+T T+N E L+ LN +F+NFP+LRA+E AT IPHLV ALK+G
Sbjct: 1884 SNELIRSLTAALERGLWSTATINIEVLRTLNVIFSNFPKLRASEAATFCIPHLVGALKSG 1943
Query: 1915 SEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLL 1974
E Q LD L+LLR +W+ +V+K+Q++ AA+AIP+LQ L+++ PPRF +KA+ LL
Sbjct: 1944 VEDVQGLVLDILYLLRHSWTNMSIDVAKSQAMIAAEAIPVLQMLMKTCPPRFHDKADSLL 2003
Query: 1975 QCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
CLPG L V + R NN+KQS+ + +C+LT+GN PPRQTK+VS PEW+E F W+F+
Sbjct: 2004 HCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCPPRQTKVVSNSTTPEWKEGFTWAFD 2063
Query: 2035 IPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEI 2093
+PPKGQKLHI CK+KS GK++ G+VTIQID+VV G +G +L E SK SR+L+I
Sbjct: 2064 VPPKGQKLHIICKSKSTFGKTTLGRVTIQIDKVVTEGEYSGSLSLNHENSKDASSRSLDI 2123
Query: 2094 EFLWSNK 2100
E WSN+
Sbjct: 2124 EIAWSNR 2130
|
|
| TAIR|locus:2205866 AT1G44120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3587 (1267.7 bits), Expect = 0., P = 0.
Identities = 795/2120 (37%), Positives = 1243/2120 (58%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
M+DP+ ++ + IEQL SS QEKE S +LL L ++ + + A+P +
Sbjct: 5 MDDPEKAAVTITRLIEQLHAKKSSAQEKELSTARLLGLAKGKKECRKIISQNVNAMPAFI 64
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVXXXXXXXXXXXXXKSSSAEGQIAAAKTIY 120
SLLRSG+L K+ +A+VL LCK+ +R K+ KS S + + A+ IY
Sbjct: 65 SLLRSGTLLAKLNSASVLTVLCKDKNVRSKILIGGCIPPLLSLLKSDSVDAKRVVAEAIY 124
Query: 121 AVSQGGAK-DYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWA 179
VS G D VG+KIF TEGVVP LW+QLK G K V+ L GALRNL +GFWA
Sbjct: 125 EVSLCGMDGDNVGTKIFVTEGVVPSLWDQLKTGKKQDKTVEGHLVGALRNLCGDKDGFWA 184
Query: 180 ATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG 239
T++ GG+DI++KLL +Q++ LLA ++ S S+V + A + L++LLG
Sbjct: 185 LTLEDGGVDIILKLLQSSNPVSQSNAASLLARLIRIFTSSISKVEESGAVQVLVQLLGEE 244
Query: 240 NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENA 299
N VRA AL++++ ++A +GI +I+A +A SKE ++ E + LQ
Sbjct: 245 NSVFVRASVVNALEAITSKSEEAITVARDLDGIHLLISAVVASSKESVEEETERVLQSYG 304
Query: 300 MCALANISGGLSNVIXXXXXXXXXXXXPAQVADTLGALASALMIYDSKAESTKPS-DPLI 358
ALAN+ GG+S +I +AD LGALA AL + T+ + DP +
Sbjct: 305 TQALANLCGGMSGLIVYLGGLSLSPRLTEPIADILGALAYALRKFQLSCGDTREAFDPTL 364
Query: 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQE 418
E LV KPR L+ ER +EA+ SL+GN LS L N +AKR+LV L +AT+ +E
Sbjct: 365 TEGILVKLLKPRDTQLIHERILEAMESLFGNVDLSKLLNNVDAKRVLVCLTILATDGPRE 424
Query: 419 ELVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNENDDSKW 478
++ L LC + G +W A+ R SV L +L++ ++S+W
Sbjct: 425 RMITCLSNLCKH-GDVWDAIGKREGIQILIPYLGLSSEQHQELSVEFLAILTDNVEESRW 483
Query: 479 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN 537
A+T+AGGIPPL+QILE+G S KAK+D+ ++ NLC HSE+IR CVE A A+PALL LLKN
Sbjct: 484 AVTSAGGIPPLLQILETGVSQKAKDDAVRVILNLCCHSEEIRLCVEKAGAIPALLGLLKN 543
Query: 538 GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 597
G +E +A TL LI +D + I Q+ AL D P+SK +++ L +L+ S + +
Sbjct: 544 GGPKSQESSANTLLKLIKTADPSVIEQVQALFLGDAPKSKTHLIRVLGHVLASASLEEFV 603
Query: 598 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 657
+GSAAN+ + ++++ L+S+ E+ + +AS LA +F +RKDL + KLL
Sbjct: 604 TKGSAANNGLRSLVQRLASSNEKMKENAASVLADLFSSRKDLCGGLGFDEDDNPCTKLLS 663
Query: 658 VGSECILVEASRCLAAIFLSVREN---REVAAVARDALSPLVVLAGSPVLEVAEQATCAL 714
+ + + + L ++ ++ ++++ + + PL+ A + +E E L
Sbjct: 664 GNTHAVATQLAHALGSLSNPTKKKTATKKLSGPEVEVIKPLIKSAKTNPIESTENPMSTL 723
Query: 715 ANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNR 774
ANL+ D V+ +A+ ++++ TRVL EGT+ GK A+ A+ +LL ++
Sbjct: 724 ANLLSDPNVAAEALNDDVVSALTRVLREGTLQGKRNASHALHQLLKHFQVSDVFKGNEQC 783
Query: 775 AGTVLALVSFLESAS-GSVATSEALDALAILSRSG-GASGHVKPAWQVLAEFPKSITPIV 832
V L+ L + + A + L+ L++L+++ GA+ P + E P ++ +V
Sbjct: 784 RFAVSELIDLLNATDLNNSAFIDVLEVLSLLAKAKYGANLSHNP-FSAFGEVPSNLDSLV 842
Query: 833 SSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGA 892
+A+ PL+QDKAIEILSR C+ Q +LG + S ISS+A R I+ ++P++K+GGA
Sbjct: 843 RGLAEGHPLVQDKAIEILSRFCKTQFILLGRLLVTQSKSISSLANRTINSSSPEIKVGGA 902
Query: 893 ALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYT 952
LL+CAAK + E + S L+ +L+ M + S + G + + S T
Sbjct: 903 ILLVCAAKNDITLWAEAVEQSGYLKTLVNTLLDMSK--QNSKSASYGIEIQRPRSFI--T 958
Query: 953 SEEARNGGESESSTAV-IFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLS 1011
S +SE V I G ++WLL ++ ++V+ME ++++ + + + S
Sbjct: 959 SNLCLRMDDSEMVDPVTILGSTASMWLLSIICSSHPSNRLVVMEGNGLEIIAENLQRNKS 1018
Query: 1012 QFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQA 1071
TQ + + WI LA++ Q+ ++ + AT + LA ++SE+ + YF AQ
Sbjct: 1019 N-TQENSSDSEEKWIAMSFLAVMSQEPKVVSSPATENILQTLAPFMQSEQMIDGYFTAQV 1077
Query: 1072 VASLVCNGSRGTLLSVXXXXXXXXXXXXXXXXDADVQDLLDLSEEFALVRYPDQVALERL 1131
+A+LV + + T+ + ++D + L L+EE +LV+ P + LE L
Sbjct: 1078 LAALVRHKNDKTISEIMNSDIVETTINLVGCEESDTRSLCALAEELSLVQNPYEATLEVL 1137
Query: 1132 FRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGAL 1191
F E +R G+ ++K IP LV+LLKP D+ G +A+ L ++A + +K+++ EAGAL
Sbjct: 1138 FENERVRSGSFTKKCIPLLVNLLKPYADKVGGIPVAIRLLRRIADNDDLSKLLIAEAGAL 1197
Query: 1192 EALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSA 1251
+AL KYLSL PQD+TE ++LL LF S EI RH++A +++ QL+ +L L R RY+A
Sbjct: 1198 DALAKYLSLSPQDSTEITVSELLESLFRSPEITRHKTAISSMKQLIGILHLASRSTRYNA 1257
Query: 1252 AKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRL-LSENPSRALAV 1310
A+ L LFS++HIR++E A +A+ PL+E+LNT LE E+ AA+ ALV+L + NP R +
Sbjct: 1258 ARVLCELFSSEHIRDSELAWKALSPLIEMLNTTLESERVAALTALVKLTMGINP-RPDIL 1316
Query: 1311 ADVEMNAVDVLCRILS-SNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVT 1369
+E N +D + +ILS + S+E K AA +C LF N +R++ +AA C+ L+SL+ T
Sbjct: 1317 TSLEGNPLDNIYKILSLDSSSLESKTSAARICRFLFTNEGLRTSTSAACCIVSLISLIRT 1376
Query: 1370 EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429
S A + + ALD+L+D ++ E+ H V G + NY++ EA L K+ KD
Sbjct: 1377 GKSTAIEAGMFALDRLLDIKRFVEVAEEHDCVNLFYGYVASENYLISEAAISCLTKMAKD 1436
Query: 1430 RPSCKLEMVKAGVIESVLDILHEAP-DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLF 1488
K++++K G+IE + L ++P LCS A+L R+LTN IA+ A K+V+PL
Sbjct: 1437 NTPRKMDLIKMGIIEKCISQLSKSPPSSLCSVIADLFRVLTNVGVIARSQDAIKMVQPLL 1496
Query: 1489 LLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVXXXXX 1548
L+L R + GQ LQ + NILE P + S I PLIPLL+S + AV
Sbjct: 1497 LILLRQDLDFQGQLGGLQAIANILEKPMVLESLKIASSTIIMPLIPLLESESIAVKNATT 1556
Query: 1549 XXXXXXXXXXXXXKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGG 1608
++ T+ +I PL++++G + LQ+ A+ L ++TWP E+A GG
Sbjct: 1557 ILLTSLLEMQRFQEEITTKNLIAPLVKLVGIRVRNLQEIALMGLERSSVTWPKEVADTGG 1616
Query: 1609 VTELSKIILQADPSLPHALWESAASVLSSILQFSSE-FYLEVPVAVLVRLLRSGSEGTVI 1667
+ ELSK+I+ DP LP LWESAA +L +IL+ + E +Y V + VL ++L S +E TVI
Sbjct: 1617 IQELSKVIIDEDPQLPVYLWESAAFILCNILRINPEHYYFTVTIPVLSKMLFSTAESTVI 1676
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKA 1727
+++AL++ E+ D +S + MAES A++ALL+LLRSH CEE +ARLLE++L N K+RE+K
Sbjct: 1677 LAIDALIIRENQDSSSVQEMAESSALDALLDLLRSHHCEELSARLLELILRNPKVRETKI 1736
Query: 1728 TKSAILPLSQYLLDPXXXXXXXXXXXXXXXGDLFQNEGLARSADAVSACRALVNVLEEQP 1787
+ + PLS+Y+LDP GD+ Q+EGLA++ D+ ACRAL+++LE++P
Sbjct: 1737 CQFVLTPLSEYILDPDTISESAKILIAMALGDISQHEGLAKATDSPVACRALISLLEDEP 1796
Query: 1788 TEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSN 1847
+EEM++V + AL+N M+SR++++A+AEAGGV V +++ SS+P+ S QAA+ +K LFSN
Sbjct: 1797 SEEMQMVVMRALENFAMHSRTSRKAMAEAGGVYWVQEMLRSSNPQVSTQAALIIKSLFSN 1856
Query: 1848 HTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHL 1907
HT+QEY S E ++++T A+E+E W T +N E ++ LN + FP+LR++E AT IPHL
Sbjct: 1857 HTLQEYVSGEIIKSLTNAMEREFWTTTAINVEIVRTLNTILTTFPKLRSSEAATACIPHL 1916
Query: 1908 VTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQS-----G 1962
+ ALK+G + +++A+D ++ LRQ+W+ P E +++Q+V AADAIP+LQ +++S
Sbjct: 1917 IGALKSGEQEARDSAMDTIYTLRQSWTTMPTETARSQAVLAADAIPVLQLMMKSKLKSPA 1976
Query: 1963 PPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPN 2022
P F E+ LL CLPG+L V IKRG+N+K+S + +C+L + N P ++TK+V +
Sbjct: 1977 PSSFHERGNSLLNCLPGSLTVAIKRGDNLKRS----NAFCRLIIDNCPTKKTKVVKRSSS 2032
Query: 2023 PEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPE 2082
P W+ESF W F PP+GQ L I CK+ + + GKV I ID+V+ G+ +G + L E
Sbjct: 2033 PVWKESFTWDFAAPPRGQFLEIVCKSNNIFRNKNLGKVRIPIDKVLSEGSYSGIFKLNDE 2092
Query: 2083 SKSGPS--RNLEIEFLWSNK 2100
SK S R+LEIE +WSN+
Sbjct: 2093 SKKDNSSDRSLEIEIVWSNQ 2112
|
|
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 82/268 (30%), Positives = 123/268 (45%)
Query: 1146 AIPALVDLL--KPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYL-SLGP 1202
AI ALV L + I DR A+ + L+K N+I++ EAGA+ L K L S G
Sbjct: 342 AIRALVCKLSSQSIEDRR----TAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGD 397
Query: 1203 QDATEEAATDLLGILFSSAEIRRHESAFA-AVSQLVAVLRLGGRGARYSAAKALESLFSA 1261
+ E A T +L + S E + A AV+ +V VLR G AR +AA L SL A
Sbjct: 398 TETQENAVTCILNL--SIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLA 455
Query: 1262 DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVL 1321
D + A A+ LV++L G R + A AL L ++ AV V L
Sbjct: 456 DENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAV---RAGIVKPL 512
Query: 1322 CRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRA 1381
++L+ + S + +A + VL N ++ + A + PL+ L + + +
Sbjct: 513 VKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAI 572
Query: 1382 LDKLV--DDEQLAELVAAHGAVIPLVGL 1407
L L D E+L + GAV+PL+ L
Sbjct: 573 LLCLCKRDTEKLIS-IGRLGAVVPLMEL 599
|
|
| UNIPROTKB|E1C8F9 E1C8F9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 92/352 (26%), Positives = 147/352 (41%)
Query: 464 ALLCLLSNEND-DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522
A LCL + +K I GG+ PL+ +L S ++S + L + RA V
Sbjct: 129 ATLCLAHMAVEYTTKVQIFEQGGLEPLISLLGSPDPDVTKNSVECIYLLVQEFQS-RAAV 187
Query: 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI----SQLTALL----TSDLP 574
+ +P LL LLK+ + +A KTL + + I L LL T++
Sbjct: 188 CELNVIPPLLDLLKSEYPVIQLLALKTLEVISKDREMRIILGENEGLDCLLKILETNEFN 247
Query: 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF- 633
+ V L L + L V ++R+ + + + + ST + Q +A A+A
Sbjct: 248 DLHVEALAVLGNCLEDVHTMQLIRQTGGLKKLL-SFVGV--STVPDIQKNAAKAIAKAAS 304
Query: 634 --ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDA 691
E RK L E + ++ LL++ + + V AS+ ++A+ ++ R A
Sbjct: 305 DSENRKILNEEDVES----CLINLLEIDDDGVKVAASQAISAMCENLASKR---AFGLQG 357
Query: 692 LSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAE-EIILPATRVLCEGTISGKTL 750
+ LV L S EV E A ALANL S + A+AE E I P + L G
Sbjct: 358 IPQLVQLLSSDDEEVKEAAVIALANLTTASPSNASAVAEAEGIEPLVKSL-NAERHG--- 413
Query: 751 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALA 802
A A A +L + + + + G + L L S+S V + AL A
Sbjct: 414 AVANAATVLTNMAMQEPLRLSIQSHGVMSVLTEPLRSSSSQVQSRAALTVAA 465
|
|
| MGI|MGI:1918132 Armc3 "armadillo repeat containing 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 91/354 (25%), Positives = 154/354 (43%)
Query: 464 ALLCLLSNEND-DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522
A LCL + + K I GG+ PL+++L S K++S + NL + R +
Sbjct: 129 ASLCLANMSVEYTGKVQIFEHGGLEPLIRLLSSSDPDVKKNSIECIYNLVQDFQ-CRTTL 187
Query: 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-------ISQLTALL-TSDLP 574
+ +A+P +L LL++ + +A KTL + + T + LT +L T +L
Sbjct: 188 QELNAIPPILELLRSEYPIIQLLALKTLGVITCDKEARTMLKENQGLDHLTKILETKELN 247
Query: 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF- 633
+ V L + + L + + +L + + + V + + SST + Q +A A+A
Sbjct: 248 DLHVEALSVIANCLEDMD-TMVLMQQTGSLKKVLSFAE--SSTIPDIQKNAAKAIAKAAY 304
Query: 634 --ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF--LSVRENREVAAVAR 689
E RK E + K L + LL S+ + AS+ ++A+ LS +E + +
Sbjct: 305 DPENRKVFHEQEVE-KCL---VTLLGSDSDGTKIAASQAISALCENLSCKEFFNTQGIPQ 360
Query: 690 DALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAE-EIILPATRVLCEGTISGK 748
+V L S EV E A ALANL S + A AE + I P +L S +
Sbjct: 361 -----IVQLLRSDNEEVREAAALALANLTTSSPANANAAAEADAIDPLINILS----SKR 411
Query: 749 TLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALA 802
A A A +L + + + + AL+ L S + V ++ AL A
Sbjct: 412 DGAIANAATVLTNMATQEPLRAIIQNHEIMHALLGPLHSTNTLVQSTAALTVAA 465
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 71/244 (29%), Positives = 112/244 (45%)
Query: 1167 ALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRH 1226
A+ + L+K N+I++ EAGA+ L L+ E A T +L + S E +
Sbjct: 351 AVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNL--SIYENNKE 408
Query: 1227 ESAFA-AVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGL 1285
FA AV+ +V VLR G AR +AA L SL AD + A+ LV++L G
Sbjct: 409 LIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGT 468
Query: 1286 EREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLF 1345
R + A AL L + ++ AV V L ++LS + + +A + VL
Sbjct: 469 PRGKKDAATALFNLCIYHGNKGRAV---RAGIVTALVKMLSDSTRHRMVDEALTILSVLA 525
Query: 1346 GNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVIP 1403
N +S + A + L+ +L T+ + + + L L D E+L + GAV+P
Sbjct: 526 NNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLIT-IGRLGAVVP 584
Query: 1404 LVGL 1407
L+ L
Sbjct: 585 LMDL 588
|
|
| ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 174 (66.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 101/441 (22%), Positives = 184/441 (41%)
Query: 473 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 532
N D+K I A GG+ PL++ + S + + + ++ + NL H ED +A + + A+ L+
Sbjct: 136 NADNKVLIVALGGLAPLIKQMMSPNVEVQCNAVGCITNLATH-EDNKAKIARSGALGPLI 194
Query: 533 WLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDLPESKVYVLDALK 585
L K+ + A L ++ H D I L LL+S + + Y AL
Sbjct: 195 RLAKSKDMRVQRNATGALLNMTHSDDNRQQLVNAGAIPVLVQLLSSSDVDVQYYCTTALS 254
Query: 586 SMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA 645
++ V S+ R + V++++ ++ S+ + Q ++A AL + K E +
Sbjct: 255 NI--AVDASNRKRLAQTESRLVQSLVHLMDSSTPKVQCQAALALRNLASDEKYQLEI-VR 311
Query: 646 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE 705
K L +++LL +++ A C+ I S+ E + L PLV L GS E
Sbjct: 312 AKGLPPLLRLLQSSYLPLILSAVACIRNI--SIHPLNESPIIDAGFLKPLVDLLGSTDNE 369
Query: 706 VAE-QATCALANLILDSEVSEKAIAEE-IILPATRVLCEGTISGKTLAAAAIARLLHSRK 763
+ A L NL S+ +++ + + + ++ ++ ++ AAIA L S +
Sbjct: 370 EIQCHAISTLRNLAASSDRNKELVLQAGAVQKCKDLVLRVPVTVQSEMTAAIAVLALSDE 429
Query: 764 IDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAE 823
+ + G L+ ES S V + A + S+ G S V+ W A+
Sbjct: 430 LKPHLLSL----GVFDVLIPLTESDSIEVQGNSAAALGNLSSKVGDYSIFVRD-W---AD 481
Query: 824 FPKSITPIVSS-IADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCIS---SIARRV 879
I + +A P Q AI L +L + L + + + SI+ +
Sbjct: 482 PNGGIHGYLKRFLASGDPTFQHIAIWTLLQLLESEDKRLVGYIGKSDDIVQMVRSISDKN 541
Query: 880 ISCTNPKVKIGGAALLICAAK 900
I + GG A +I A+
Sbjct: 542 IESDEEDTEDGGEAEVIALAR 562
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 168 (64.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 66/219 (30%), Positives = 100/219 (45%)
Query: 1167 ALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEE-AATDLLGILFSSAEIRR 1225
A G L LAK N++ + EAGA+ L + LS P T+E + T LL + +
Sbjct: 365 AAGELRLLAKRNVDNRVCIAEAGAIPLLVELLS-SPDPRTQEHSVTALLNLSINEGNKGA 423
Query: 1226 HESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGL 1285
A A++ +V VL+ G AR +AA L SL D + A A A+Q L+ +L G
Sbjct: 424 IVDA-GAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGT 482
Query: 1286 EREQHAAIAALVRLL--SENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGV 1343
R + A A+ L N SRA V+ VD L R+L + + +A + +
Sbjct: 483 RRGKKDAATAIFNLCIYQGNKSRA-----VKGGIVDPLTRLLK-DAGGGMVDEALAILAI 536
Query: 1344 LFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRAL 1382
L N ++ +A A + LV ++ T SP A+
Sbjct: 537 LSTNQEGKTAIAEAESIPVLVEIIRTG-SPRNRENAAAI 574
|
|
| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 87/397 (21%), Positives = 168/397 (42%)
Query: 238 SGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQE 297
SGN + A G+L D D+R + G + +++T S E G+ ++
Sbjct: 387 SGNGYGLDARR-GSLNDFEDRSNDSRELRTDAPG-RSSVSSTTRGSVE--NGQTSENHHH 442
Query: 298 NAMCALANISGGLSNVIXXXXXXXXXXXXPAQVADTLGALASALMIYDSKAESTKP-SD- 355
+ A + +S +D G + S + + A + + SD
Sbjct: 443 RSPSATSTVSNEEFPRADANENSEESAHATPYSSDASGEIRSGPLAATTSAATRRDLSDF 502
Query: 356 -PLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN 414
P +++ QF R + R + A ++ L ++ ++ K+L+ L + +
Sbjct: 503 SPKFMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLSEVE---TQVKKLVEELKSSSL- 558
Query: 415 EVQEELVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNEND 474
+ Q + A L+L R + G + L + ND
Sbjct: 559 DTQRQAT-AELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSIND 617
Query: 475 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534
++K AI AG I PL+ +LE+GS++AKE+SA+ L +L + E+ + + + A+ L+ L
Sbjct: 618 NNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSL-SVIEENKIKIGQSGAIGPLVDL 676
Query: 535 LKNGSANGKEIAAKTLNHL-IHKSDTATISQLTAL-LTSDLPESKVYVLDALKSMLSVVS 592
L NG+ GK+ AA L +L IH+ + A I Q A+ DL + ++D ++L+ ++
Sbjct: 677 LGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLA 736
Query: 593 FSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629
R + +++++ + +A+AL
Sbjct: 737 TIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAAL 773
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2100 | |||
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.0 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-11 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 9e-06 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-05 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 2e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 3e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 9e-04 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.001 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.002 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 0.002 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.003 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.004 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 3552 bits (9212), Expect = 0.0
Identities = 1443/2109 (68%), Positives = 1702/2109 (80%), Gaps = 20/2109 (0%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
M+DPDGTLASVAQCIEQLR SSS QEKE + +LLEL TRE A A+GSHSQA+P+LV
Sbjct: 5 MDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLV 64
Query: 61 SLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
SLLRSG+L K+ AA VLG LCKE +LRVKVLLGGCIPPLL LLKS SAE Q AAA+ IY
Sbjct: 65 SLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIY 124
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
AVS GG D+VGSKIFSTEGVVP LW+QL+ G K VV+ LLTGALRNL ST+GFW+A
Sbjct: 125 AVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSA 184
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
T++AGG+DILVKLL+ G S QA+ LLA +M S S+VL A A KQLLKLLG GN
Sbjct: 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
E SVRAEAAGAL++LS K+A++ IA + GIPA+INAT+APSKEFMQGE+AQALQENAM
Sbjct: 245 EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAM 304
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
ALANI GG+S +I LG+ ES SPA +ADTLGALA ALM++DS AEST+ DP ++E
Sbjct: 305 GALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIE 364
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
Q LV KPR LVQER IEALASLYGN LS KL ++EAK++LVGLITMAT +VQEEL
Sbjct: 365 QILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
+RAL LC +G LW AL GREG+QLLISLLGLSSEQQQE +VALL +L++E D+SKWAI
Sbjct: 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484
Query: 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA 540
TAAGGIPPLVQ+LE+GS KAKEDSA++L NLC HSEDIRACVESA AVPALLWLLKNG
Sbjct: 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP 544
Query: 541 NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
G+EIAAKTL L+ +D ATISQLTALL DLPESKV+VLD L +LSV S D++REG
Sbjct: 545 KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
SAANDA+ T+I++LSS+KEETQ K+AS LA IF +R+DL ES + + +KLL +
Sbjct: 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720
E + +++R LAA+ S++ENR+V+ A DA+ PL+ LA S +EVAEQA CALANL+ D
Sbjct: 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724
Query: 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
EV+ +A+AE+IILP TRVL EGT+ GK AA A+A+LL +D + D V GTVLA
Sbjct: 725 PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLA 784
Query: 781 LVSFLESASG-SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
LV L S S ATSEAL+ALA+L+R+ G + P W VLAE P S+ P+V +A+
Sbjct: 785 LVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGH 844
Query: 840 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899
PL+QDKAIEILSRLCRDQP VLGD + AS CISS+A R+I+ ++ +VKIGG ALLICAA
Sbjct: 845 PLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAA 904
Query: 900 KVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARN- 958
K + Q ++E L+ S LIQ+LV ML + N KE++SI T
Sbjct: 905 KEHRQLVMEALDESGYLKLLIQALVDML----------KQNSKKESLSIEIQTPRGFLES 954
Query: 959 -----GGESES-STAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQ 1012
G + E A I G +A+WLL V+A HD K K+ IMEAG ++VLT++++ S
Sbjct: 955 NLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN 1014
Query: 1013 FTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAV 1072
Q ++++ SIWI ALLLAILFQDRD++RA ATM+AIP LANLLKSEE+ +RYFAAQA+
Sbjct: 1015 -RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQAL 1073
Query: 1073 ASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLF 1132
ASLVCNGSRGTLL+VANSGA GGLISLLGCA++D+ +L+ LSEEF+LVR PDQVALERLF
Sbjct: 1074 ASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLF 1133
Query: 1133 RVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALE 1192
RVEDIRVGAT+RKAIP LVDLLKPIPDRPGAP LALG L QLA+ NK+ M EAGAL+
Sbjct: 1134 RVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALD 1193
Query: 1193 ALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAA 1252
ALTKYLSLGPQD+TEEAA++LL ILFSS E+RRHESAF AV+QLVAVLRLG R ARYSAA
Sbjct: 1194 ALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAA 1253
Query: 1253 KALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVAD 1312
+AL+ LFSA+HIR++E ARQAVQPLVE+LNTG E EQHAAI AL++L S NPS+ALA+AD
Sbjct: 1254 RALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIAD 1313
Query: 1313 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1372
VE NA++ LC+ILSS+ S+ELK DAAELC VLF NTRIRST AAARC+EPL+SLLV+E S
Sbjct: 1314 VEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESS 1373
Query: 1373 PAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1432
AQ + V ALD+L+DDEQLAELVAAHGAV+PLVGL+ G NY+LHEA AL+KLGKDRP
Sbjct: 1374 TAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPP 1433
Query: 1433 CKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492
CKL+MVKAG+IE VLDIL EAPD LCSA AELLRILTNN+ IAKG SAAKVVEPLFLLLT
Sbjct: 1434 CKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLT 1493
Query: 1493 RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1552
R + G GQHSALQ LVNILE PQC A +LT QAIEPLIPLL+SP+ AVQQLAAELLS
Sbjct: 1494 RPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLS 1553
Query: 1553 HLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTEL 1612
HLL EE Q+D TQ + PL+R+ G GI LQQRAVKAL SI+L+WP +A GG+ EL
Sbjct: 1554 HLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFEL 1613
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNA 1672
SK+ILQADP PHALWESAASVLS+IL+FSSE+Y EVPVAVLV+LLRS SE TV+ +LNA
Sbjct: 1614 SKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNA 1673
Query: 1673 LLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAI 1732
LLVLE DD +SAE MAESGAIEALLELLRSHQCEE AARLLE L NN K+RE KATK AI
Sbjct: 1674 LLVLERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAI 1733
Query: 1733 LPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMK 1792
PLSQYLLDPQT++QQARLLA LALGDLFQ+EGLARS DAVSACRALV++LE+QPTEEMK
Sbjct: 1734 APLSQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMK 1793
Query: 1793 VVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQE 1852
+VAICALQNLVM+SR+NKRAVAEAGGVQVV +L+ SS+P+TS QAA+ +KLLFSNHTIQE
Sbjct: 1794 MVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQE 1853
Query: 1853 YASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALK 1912
YASSE +RA+TAA+EK+LW+T TVNEE L+ALN LF+NFP+LRATE ATL IPHLV ALK
Sbjct: 1854 YASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALK 1913
Query: 1913 TGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEF 1972
+GSEA QEAALD LFLLRQ+WSA PAEV++AQ++AAA+AIP+LQ L++SGPPRF E+AE
Sbjct: 1914 SGSEAAQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAES 1973
Query: 1973 LLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWS 2032
LLQCLPG+L V IKRGNN+KQS+GN + +CKLTLGN PPRQTK+VS +PEW+E F W+
Sbjct: 1974 LLQCLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWA 2033
Query: 2033 FEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPES-KSGPSRNL 2091
F+ PPKGQKLHISCK+K+ GKSS GKVTIQIDRVVM G +GEY+L PES K G SR L
Sbjct: 2034 FDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTL 2093
Query: 2092 EIEFLWSNK 2100
EIEF WSN+
Sbjct: 2094 EIEFQWSNR 2102
|
Length = 2102 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 1981 LVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEI-PP 2037
L V + N+ K G Y K++LG +TK+V NP W E+F F + P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETF--EFPVLDP 58
Query: 2038 KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLG 2071
+ L + +K + K F G+V I + ++ G
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSG 93
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-13
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 1981 LVVIIKRGNN--MKQSVGNPSVYCKLTLGNTP--PRQTKIVSTGPNPEWEESFAWSFEIP 2036
L V + N K G Y K++LG ++TK+V NP W E+F +
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV-TL 59
Query: 2037 PKGQKLHISCKNKSKMGKSSF-GKVT 2061
P+ +L I + + GK F G+VT
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 1980 TLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPP--RQTKIVSTGPNPEWEESFAWSFEI 2035
TL V I N+ K G Y K++L P ++TK+V NP W E+F FE+
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETF--EFEV 58
Query: 2036 -PPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRV 2067
PP+ +L I +K + G+ F G+VTI + +
Sbjct: 59 PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 437 ALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG 496
A+ G+ L+SLL S E Q + L LS N+D+ A+ AGG+P LVQ+L+S
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 497 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 554
+ + + LRNL ED + V A VP L+ LL + + + ++ A L++L
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-10
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 395 KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS 454
+ + LV L++ + VQ E AL L +A+ G+ L+ LL
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 455 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512
E+ + ++ L L+ +D+K + AGG+P LV +L+S + ++++ L NL
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1981 LVVIIKRGNN--MKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP-P 2037
L V + N + +S PS Y +LT+G T +++K+ NP WEE F +F + P
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKT-TQKSKVKERTNNPVWEEGF--TFLVRNP 58
Query: 2038 KGQKLHISCKNKSKMGKSSFGKVTI 2062
+ Q+L I K+ S G +T+
Sbjct: 59 ENQELEIEVKDDKT--GKSLGSLTL 81
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG 538
A+ AGG+P LV +L S + ++A L NL + D V A +PAL+ LLK+
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 539 SANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPESKVYVLDALKSMLS 589
+ A L +L + + +L LL S + + AL ++ S
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSSSAE 110
+ +P LVSLL S V+ +AA L +L N ++ ++ G +P L+ LLKS E
Sbjct: 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 111 GQIAAAKTIYAVSQGGA--KDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALR 168
AA + ++ G K V G VP L L S + TGAL
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEA-----GGVPKLVNLLD---SSNEDIQKNATGALS 116
Query: 169 NLST 172
NL++
Sbjct: 117 NLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 1354 VAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRN 1412
V A + LVSLL + Q AL L + + V G + LV LL +
Sbjct: 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 1413 YMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILT 1469
+ +A AL L KL +++AG + ++++L + + + L L
Sbjct: 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 182 VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 241
+QAGG+ LV LL+ + Q + L+ + + V+ A L++LL S +E
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 242 ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMIN 277
V A AL++L+ +D + + + G+P ++N
Sbjct: 64 -EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP 2036
GTLVV++ + N+ K+ + YC L +G + G +PEW+E FEI
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEEL--RFEIT 58
Query: 2037 PKGQK-LHISCKNKSKMGKSSFGKVTIQIDRVV 2068
+ L ++ + K G + + +
Sbjct: 59 EDKKPILKVAVFDDDKRKPDLIGDTEVDLSPAL 91
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 15 IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQA 74
+ L S +VQ + L L + AV + +P LV LL+S V A
Sbjct: 13 VSLLSSSDENVQR--EAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAA 69
Query: 75 ATVLGSLCK-ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTI 119
L +L + ++ VL G +P L+ LL SS+ + Q A +
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 1998 PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-SS 2056
P YC ++L +TK V GPNP W E F + ++PP IS NK+K K S
Sbjct: 22 PHPYCVISLNEVKVARTK-VREGPNPVWSEEFVFD-DLPPDVNSFTISLSNKAKRSKDSE 79
Query: 2057 FGKVTIQIDRVVMLGAVAGEYTLLPESKSG 2086
+VT+Q+ ++ Y L S
Sbjct: 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLK 109
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEI 2035
GTL V++ ++ + +G Y + T R++K+ G NPEW E F ++ E
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEY 59
Query: 2036 PPKGQKLHISCK--NKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLP 2081
P G + + +K F G+ TI + + G G L+P
Sbjct: 60 PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 138 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG 197
G +P L L + NV AL NLS A V+AGG+ LV+LL
Sbjct: 5 QAGGLPALVSLLSS--SDENVQREAA-WALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 198 QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 256
+ L + VL A +L+ LL S NE ++ A GAL +L+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 9e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 473 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512
+ ++K A+ AG +PPLVQ+L S + +E++A L NL
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1995 VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054
N ++ LGN TK + NPEW + FA+S + +G L +S +K K
Sbjct: 15 NSND-PVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKD-RLQGSTLEVSVWDKDKAKD 71
Query: 2055 SSFGKV 2060
G V
Sbjct: 72 DFLGGV 77
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 1273 AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSME 1332
+ LV +L++ E Q A AL L + N AV VE + L ++L S E
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV--VEAGGLPALVQLLKS-EDEE 64
Query: 1333 LKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV 1386
+ A L + G + V A V LV+LL + Q + AL L
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 1998 PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH-ISCKNKSKMGKSS 2056
YC ++L +TK V NP W E F F+ PP +S NK K K
Sbjct: 18 RDPYCTVSLDQVEVARTKTV-EKLNPFWGEEF--VFDDPPPDVTFFTLSFYNKDKRSKDR 74
Query: 2057 ---FGKVTIQIDRVVMLGAVAGEYTLLPES 2083
GKV + ++ + + L P
Sbjct: 75 DIVIGKV--ALSKLDLGQGKDEWFPLTPVD 102
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 2011 PRQTKIVSTGPNPEWEESFAWSFE-IPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVV 2068
++T+++ NP W E+F W P + L I K+ K+G++ G T+ + +V
Sbjct: 27 KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLV 86
Query: 2069 MLGAVAGEYTLLPESKS 2085
G + LL +
Sbjct: 87 SEGLLEVTEPLLDSNGR 103
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 40/246 (16%)
Query: 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRVKVLLGGCIPPLLGLLKSSSAEG 111
+ AVP+ + LL S V+ QA LG++ ++E R VL G + PLLGLL SS+
Sbjct: 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI 215
Query: 112 QIA--AAKTIYAVSQGG-----------AKDYVGSKIFS--TEGVVPVLW--EQLKNGL- 153
+ A T+ + +G A + I+S E +V W L +G
Sbjct: 216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275
Query: 154 -KSGNVVD----------------NLLTGALR---NLSTSTEGFWAATVQAGGIDILVKL 193
K V+D + T ALR N+ T ++ + G + L
Sbjct: 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSL 335
Query: 194 LTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALK 253
L+ + + + C+ ++ + + V+ A+ L+ LL S E ++ EA A+
Sbjct: 336 LSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAIS 394
Query: 254 SLSDHC 259
+ +
Sbjct: 395 NATSGG 400
|
Length = 526 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 1775 ACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETS 1834
ALV++L E ++ A AL NL + N +AV EAGG+ ++ L+ S D E
Sbjct: 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66
Query: 1835 VQAAMFVKLLFSNHTIQE 1852
A ++ L + +
Sbjct: 67 KAALWALRNLAAGPEDNK 84
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2100 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.97 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.96 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.96 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.86 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.82 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.71 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.7 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.66 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.64 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.61 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.6 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.56 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.51 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.47 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.44 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.43 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.42 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.4 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.35 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.33 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.29 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.23 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.22 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.19 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.18 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.17 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.13 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.13 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.12 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.07 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.07 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.06 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.05 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.04 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.01 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.0 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 98.99 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.98 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 98.97 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.97 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 98.94 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 98.92 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.91 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 98.91 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.9 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 98.89 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 98.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 98.88 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 98.87 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 98.85 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 98.85 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 98.85 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 98.84 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 98.83 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 98.81 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.8 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 98.8 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 98.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.8 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 98.78 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 98.78 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 98.77 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 98.75 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 98.74 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.72 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.71 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.71 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.7 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.7 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 98.7 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 98.69 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 98.69 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 98.68 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 98.68 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 98.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 98.68 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 98.67 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 98.67 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.66 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 98.65 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.65 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.65 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 98.64 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.62 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 98.62 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 98.61 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 98.61 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 98.61 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 98.6 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 98.59 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 98.58 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.58 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 98.57 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 98.56 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.56 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 98.55 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 98.54 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 98.52 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 98.51 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 98.51 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 98.5 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 98.5 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.49 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 98.48 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 98.48 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 98.48 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 98.47 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 98.47 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 98.47 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 98.45 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 98.44 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 98.44 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 98.43 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 98.42 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 98.41 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 98.4 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.4 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.4 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 98.39 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 98.39 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.36 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.33 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 98.32 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 98.31 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.31 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 98.29 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.26 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 98.25 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 98.24 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.23 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.22 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 98.22 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 98.22 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.21 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 98.21 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.21 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 98.21 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.21 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.2 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 98.19 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.19 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 98.17 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 98.15 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.14 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.14 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.11 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.1 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.1 | |
| PLN03008 | 868 | Phospholipase D delta | 98.08 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.08 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 98.06 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.06 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.04 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.03 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.02 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 98.02 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.01 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.99 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 97.97 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.96 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.94 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.84 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 97.84 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.83 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.83 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 97.8 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.79 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 97.76 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 97.76 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.75 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 97.65 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 97.63 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.59 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.49 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.43 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.42 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.35 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.34 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.31 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.26 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.22 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.19 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.15 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.11 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.09 | |
| PLN02270 | 808 | phospholipase D alpha | 97.03 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.01 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.0 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 96.98 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.83 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.82 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.78 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 96.69 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.64 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.4 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.34 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 96.33 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.33 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.32 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.27 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 96.27 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.25 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.25 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.1 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.06 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.06 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 95.81 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 95.7 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 95.69 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 95.53 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 95.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.47 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 95.31 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 95.26 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 95.23 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 95.08 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.08 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.96 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.75 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 94.7 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.62 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 94.58 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 94.58 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.57 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.36 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.16 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 94.16 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.13 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 94.11 | |
| PLN02352 | 758 | phospholipase D epsilon | 94.09 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 93.95 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 93.9 | |
| PRK09169 | 2316 | hypothetical protein; Validated | 93.86 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 93.71 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 93.7 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 93.49 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 93.48 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 93.05 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.82 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 92.79 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.66 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 91.68 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 91.52 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 91.4 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 91.39 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 90.51 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 90.51 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 90.41 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 90.3 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 90.22 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 89.53 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 89.47 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.43 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 89.22 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 89.07 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 88.78 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 88.73 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 88.27 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 88.27 | |
| PRK09169 | 2316 | hypothetical protein; Validated | 88.15 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 87.94 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 87.67 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 87.43 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 87.21 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 86.82 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 86.77 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 86.62 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 86.6 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 86.44 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.06 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 85.91 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 85.86 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 85.46 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 85.42 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 85.09 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 84.46 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 83.66 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 83.55 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 83.53 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 83.46 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 82.85 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 82.54 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 82.42 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 82.36 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 81.14 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 80.61 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 80.31 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 80.29 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 80.05 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-262 Score=2617.54 Aligned_cols=2096 Identities=68% Similarity=0.988 Sum_probs=2000.1
Q ss_pred CCCcchhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHh
Q 000133 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 80 (2100)
Q Consensus 1 ~~~~~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~ 80 (2100)
|+||+++..+|..++++|+..++++++|+.|+..|..|++++++.|..++.+.|++|.|+.+|++++..+|.+++.+|.+
T Consensus 5 ~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 5 MDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred ccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888899999999999999999999999998889999999999999999999999999999
Q ss_pred hhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHH
Q 000133 81 LCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVD 160 (2100)
Q Consensus 81 L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~ 160 (2100)
++.+++++.+++..|++|+|+.+|++++.+.|+.|+.+|++|+.+...++.+..+++..|++|+|++++++++..+..++
T Consensus 85 LS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~ 164 (2102)
T PLN03200 85 LCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE 164 (2102)
T ss_pred HhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence 99999999999999999999999999999999999999999998543344455778899999999999999877777788
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC
Q 000133 161 NLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240 (2100)
Q Consensus 161 ~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 240 (2100)
+.++.+|+|||...++.++.+++.|+||.++.+|+++++..+.+|+.+|.+++..+++.+..+++.|++|.|+++|++++
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 88999999999999889898999999999999999999999999999999999887778999999999999999998877
Q ss_pred CHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcccc
Q 000133 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 320 (2100)
Q Consensus 241 ~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~ 320 (2100)
+..+|.+|+|+|++|+.++++++..+++.||+|.|+.++.+++++++++.....++++++|+|.|+|++....+.+|++.
T Consensus 245 ~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~l 324 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGEL 324 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHh
Confidence 67899999999999999999999999999999999999999988998888889999999999999999999999999999
Q ss_pred ccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccc
Q 000133 321 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE 400 (2100)
Q Consensus 321 ~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g 400 (2100)
+++++....+.+..|+++|+++.++++.+....+++..+.+.|++++++..+..+++++.++|+.++.|+.++..+.+.+
T Consensus 325 l~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~d 404 (2102)
T PLN03200 325 SESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAE 404 (2102)
T ss_pred hcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Confidence 99999999999999999999999997666666788889999999999999888889999999999999999999999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+++.|+.|+...+.++|..++++|++|+.++.+.++.+.+.|++|.|+++|++++..+|+.|+++|+|++.++++++..+
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI 484 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI 484 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999998888899999
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCC
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA 560 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~ 560 (2100)
.++|+||+|+++|.+++.++|+.|+|+|.|++.++++++..+.++|++|+|+++|+++++++++.|+++|.++..++++.
T Consensus 485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999987788888889999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 561 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640 (2100)
Q Consensus 561 ~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~ 640 (2100)
.+++++.+|.++++..+.+++++++++....+..+..+..+...+|++.|+++++++++.+++.|+|+|.+++.++++++
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999999988887776566666678999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 641 ~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
+.++..|++|+|+.+|++++.+++++++++|.+++.+..+.++..+++.|++++|++++++++.++++.|+.+|.||+.+
T Consensus 645 ~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 645 ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888889999999999999999999999999999999999
Q ss_pred cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc-cccchHhHHH
Q 000133 721 SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALD 799 (2100)
Q Consensus 721 ~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~-~~v~~~~al~ 799 (2100)
++.+.++...+++++|++++++++++.|++|+|+|.+|.++.+.++.+.++++++|++.+++++|++.+ +.+...++++
T Consensus 725 ~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~ 804 (2102)
T PLN03200 725 PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALE 804 (2102)
T ss_pred chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHH
Confidence 999999999999999999999999999999999999999999999889999999999999999999999 5555578999
Q ss_pred HHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHH
Q 000133 800 ALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRV 879 (2100)
Q Consensus 800 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~ 879 (2100)
+|..+++.+.+.+|.+|+|...++.|.+++||++||++++|.+|++|+++|++||+|||..+|++|....+|+.|+++|+
T Consensus 805 ~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 805 ALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRI 884 (2102)
T ss_pred HHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCC
Q 000133 880 ISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNG 959 (2100)
Q Consensus 880 l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 959 (2100)
++|+++++|+||+..+||+||.|+++++++++++++.+..|..||+|+++.... .+-....+.--.+.... --.+..
T Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 961 (2102)
T PLN03200 885 INSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKK--ESLSIEIQTPRGFLESN-LFADGD 961 (2102)
T ss_pred hhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcc--cccceeecCCccchhhh-hhccCC
Confidence 999999999999999999999999999999999999999999999999987644 11000001111111110 011233
Q ss_pred CCCCCCcceecCchhHHHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchh
Q 000133 960 GESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRD 1039 (2100)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1039 (2100)
.|..+.|.++.+.++..|++++..+++.+||+++||||++|++++|+++|.+. +|++++|++++|++++|+++||||++
T Consensus 962 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~~~~ 1040 (2102)
T PLN03200 962 DFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQDRD 1040 (2102)
T ss_pred cccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcCChh
Confidence 47778899999999999999999999999999999999999999999999666 99999999999999999999999999
Q ss_pred hhhhhhhhchHHHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhh
Q 000133 1040 IIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFAL 1119 (2100)
Q Consensus 1040 ~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l 1119 (2100)
|+++++++++||.|+.++++||.+|||||||++++++|+|+|++..++||+++++|++.|+|+.++|..++++|++||+|
T Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l 1120 (2102)
T PLN03200 1041 VVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSL 1120 (2102)
T ss_pred hhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHh
Q 000133 1120 VRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLS 1199 (2100)
Q Consensus 1120 ~~~~~~~~~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~ 1199 (2100)
+++|++.+++.||++++++.+++.+..||.||++|++.+++++++..|++.|+.|+++++.||.+|+++|+++.|+.+++
T Consensus 1121 ~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLS 1200 (2102)
T PLN03200 1121 VRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLS 1200 (2102)
T ss_pred cccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHH
Q 000133 1200 LGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVE 1279 (2100)
Q Consensus 1200 s~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~ 1279 (2100)
..+.+..+.++++++++++.|++.+......+++++|+++|+.|+...|++|+.+|.+++..+++|+.+...|+||||+.
T Consensus 1201 l~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ 1280 (2102)
T PLN03200 1201 LGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVE 1280 (2102)
T ss_pred hcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHH
Confidence 98777778889999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcC
Q 000133 1280 ILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1280 lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
+|..+....+..++.+|.++..++.+++..+.+|++++++.++++|++.++.+++..+..++.+++.+..+|......++
T Consensus 1281 ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~aga 1360 (2102)
T PLN03200 1281 MLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARC 1360 (2102)
T ss_pred HhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCC
Confidence 99999999999999999999999988888887889999999999999988889999999999999999999999999999
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~ 1439 (2100)
+++|+.+|.++...+.+.|+.+|..||+.++.|+.+..++++.+++..+-..+....+.|+.+|..++++.+.++.+|++
T Consensus 1361 V~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Emv~ 1440 (2102)
T PLN03200 1361 IEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVK 1440 (2102)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999996666699999999999999999999999999988888888889999999999999999999999999999
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCccc
Q 000133 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRA 1519 (2100)
Q Consensus 1440 ~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~ 1519 (2100)
.|+++.++-+|...++..++.++++|+.|.+++.+.+.....++++|++..|.+++.+.+.|+.|+++|.|+.+.+++..
T Consensus 1441 ~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~ 1520 (2102)
T PLN03200 1441 AGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLA 1520 (2102)
T ss_pred hCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhh
Confidence 99999999999988888999999999999999999888889999999999999999999999999999999999999999
Q ss_pred ccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCC
Q 000133 1520 DYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1520 ~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
.+++...++++||+.+|.+.++.+|+.+++.|+.+...+.+|+++...++|+||+++|+++++..|+.|++||.+.+..|
T Consensus 1521 ~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w 1600 (2102)
T PLN03200 1521 SLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSW 1600 (2102)
T ss_pred hhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Q 000133 1600 PNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679 (2100)
Q Consensus 1600 ~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~ 1679 (2100)
|+.+.++|+|..|.+++.+.||+.+.++|+.|+.+|+|+.+++++++..-+++.|++|++++++.++..++.+|..+++.
T Consensus 1601 ~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~~ 1680 (2102)
T PLN03200 1601 PKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVLERD 1680 (2102)
T ss_pred HHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998866666999999999999999999999999999999
Q ss_pred ChhhHHHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcc
Q 000133 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGD 1759 (2100)
Q Consensus 1680 ~~~~~~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~ 1759 (2100)
|.+.++.|.++|+|+.|+++|+||+|++.+.++|+.|.|+..+|+.++++..|.||.+|+.+|++..|+++.+|+.++|+
T Consensus 1681 d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1760 (2102)
T PLN03200 1681 DSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGD 1760 (2102)
T ss_pred chhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHH
Q 000133 1760 LFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAM 1839 (2100)
Q Consensus 1760 ~~~~~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~ 1839 (2100)
++++|++.+..+..++++.|+++|++.|+++|+..|++||.+|.++++++++.++|+|++.++++|+.|+++++..+||+
T Consensus 1761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1840 (2102)
T PLN03200 1761 LFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAAL 1840 (2102)
T ss_pred chhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhhcchhhHHHHHHHHhhccccCCCCcHHHHHHHhhhhccCCCccccCCCccChHHHHHhhccCCHhHH
Q 000133 1840 FVKLLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQ 1919 (2100)
Q Consensus 1840 ~l~~L~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~c~~l~~~~~~~h~g~cs~~~tfci~~Lv~~L~~~~~~~~ 1919 (2100)
+++.||||+++|+|+|+|++|.++..+++++|.++++++++.++||.+|+.||+.+.|+.+|+|||+||+.|+.+++.+|
T Consensus 1841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1920 (2102)
T PLN03200 1841 LIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQ 1920 (2102)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhhHHHHHhcCcHHHHHHHHhCCchhHHHHHHHHhhcCCCceeeeeccchhhhhhCCCc
Q 000133 1920 EAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPS 1999 (2100)
Q Consensus 1920 eaal~aL~tL~~~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~~~~~~~a~~~le~i~~~~~~~~~r~~~~~~~~~~~~ 1999 (2100)
|+|||+||+|.++|..+|+|++|+|.+++|+|||.++++|+++||+|||||..++||+||+|+|||+|++|+++++|.++
T Consensus 1921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~~sd 2000 (2102)
T PLN03200 1921 EAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMGNTN 2000 (2102)
T ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceee
Q 000133 2000 VYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
-||.+++||+++|+||||++|.||+|||+|+|+|+.||+||++||+||||++|||+++|+|+|+|++|+++|+|+|.|+|
T Consensus 2001 Pyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L 2080 (2102)
T PLN03200 2001 AFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSL 2080 (2102)
T ss_pred CeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCCCcceEEEEEecCC
Q 000133 2080 LPE-SKSGPSRNLEIEFLWSNK 2100 (2100)
Q Consensus 2080 ~~~-~~~~~~~~~~~~~~~~~~ 2100 (2100)
.++ +|+|++|||+|||+|+||
T Consensus 2081 ~~~~~k~G~~~~~~~e~~w~~~ 2102 (2102)
T PLN03200 2081 NPESNKDGSSRTLEIEFQWSNR 2102 (2102)
T ss_pred CcccccCCCcceEEEEEEecCC
Confidence 988 789999999999999997
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-119 Score=1222.68 Aligned_cols=1626 Identities=25% Similarity=0.288 Sum_probs=1341.1
Q ss_pred chHHHHHHHhcC--CHHHHHHHHHHHHhhhccch-hhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc
Q 000133 55 AVPVLVSLLRSG--SLAVKIQAATVLGSLCKENE-LRVKVLL-GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 55 ~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~~-~~~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.+..++.-|+++ +.+.|..++..|..+++.++ +|..+.. .|++|.|+.+|++++..++..|+.+|.+++. +.
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~----~e 89 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK----EE 89 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc----CH
Confidence 467788888877 77889999999999997665 4666664 7999999999999999999999999999998 45
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC--hhhHHH-HHhcCCHHHHHHhHccCC---HHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAA-TVQAGGIDILVKLLTLGQ---SSTQAH 204 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~--~~~~~~-i~~~g~v~~Lv~lL~s~~---~~v~~~ 204 (2100)
.++..++..|++|+|+++|+++ +...+..+..+|.+|+... +.++.. +++.|+||.|+.++++++ ..++..
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sG---s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSG---SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCC---CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 5577788899999999999875 3558889999999999765 555533 568999999999999874 346788
Q ss_pred HHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCc
Q 000133 205 VCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK 284 (2100)
Q Consensus 205 a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 284 (2100)
++.+|.+|+...+.....+++.|+++.|+++|.+++ ..++..|+++|.+++.++++.+..+++.|+||.|+.++.+.+
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~- 244 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN- 244 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC-
Confidence 899999999887766677789999999999999854 689999999999999877889999999999999999996532
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCC--C----------
Q 000133 285 EFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAEST--K---------- 352 (2100)
Q Consensus 285 e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~--~---------- 352 (2100)
+..++++|+++|.|++.+.+ +.+..+.+ .|+++.++..+....... .
T Consensus 245 -------~~~VRE~AA~AL~nLAs~s~-------------e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 245 -------EVSVRAEAAGALEALSSQSK-------------EAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred -------ChHHHHHHHHHHHHHhcCCH-------------HHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 35789999999999998532 23333333 577777776665211100 0
Q ss_pred -------CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH---hCCCcc-chhhhccccHHHHHHhhcCCCHH-HHHHH
Q 000133 353 -------PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL---YGNPLL-SIKLENSEAKRLLVGLITMATNE-VQEEL 420 (2100)
Q Consensus 353 -------~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L---~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~-v~~~A 420 (2100)
.-+...+++.|.+++.+..+..+...++.+++.+ ...+.. ...+....+.+.|+.+++++++. +++.+
T Consensus 304 vwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 304 MGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 0111234444444444332322233344444444 222211 12223345568899999987655 58899
Q ss_pred HHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 421 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
..+|+.+..+ +..++.+.+.++++.|+.++...+.++|..++++|.+|+.++.+.++.+.+.|++|.|+++|.+++.++
T Consensus 384 ~eALasl~gN-~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~i 462 (2102)
T PLN03200 384 IEALASLYGN-AYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQ 462 (2102)
T ss_pred HHHHHHhcCC-hHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 9999888776 677888889999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHH
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 580 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a 580 (2100)
|+.|+++|.+++..+++++..+.++|++|+|+++|.+++.++++.|+|+|+|++.+++.
T Consensus 463 Q~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q--------------------- 521 (2102)
T PLN03200 463 QEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED--------------------- 521 (2102)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---------------------
Confidence 99999999999988888999999999999999999999999999999999999874321
Q ss_pred HHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 581 ~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
++..+...|++|.|+++|+++++++|+.|+++|.++..+.+. ..+++|+.+|.+.+
T Consensus 522 ----------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsdd 577 (2102)
T PLN03200 522 ----------------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGDL 577 (2102)
T ss_pred ----------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCCC
Confidence 344566778999999999999999999999999999876432 24588999999999
Q ss_pred HHHHHHHHHHHHHHhcCCch--hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHH
Q 000133 661 ECILVEASRCLAAIFLSVRE--NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPAT 737 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~--~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~ 737 (2100)
+.++..+..+++++...... ..+......|+++.|+++++++++++++.|+|+|++++.+ ++....++..+++++|+
T Consensus 578 ~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV 657 (2102)
T PLN03200 578 PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI 657 (2102)
T ss_pred hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence 99999999999998653322 2333344679999999999999999999999999999955 66778889999999999
Q ss_pred HHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcc
Q 000133 738 RVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPA 817 (2100)
Q Consensus 738 ~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~ 817 (2100)
.++++++.+++++++|+|.+++++....+ ...+...|++++|++++++.+.++. +.++.+|.++++.++.
T Consensus 658 ~LLss~~~~v~keAA~AL~nL~~~~~~~q--~~~~v~~GaV~pL~~LL~~~d~~v~-e~Al~ALanLl~~~e~------- 727 (2102)
T PLN03200 658 KLLTNNTEAVATQSARALAALSRSIKENR--KVSYAAEDAIKPLIKLAKSSSIEVA-EQAVCALANLLSDPEV------- 727 (2102)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhCCCHHH--HHHHHHcCCHHHHHHHHhCCChHHH-HHHHHHHHHHHcCchH-------
Confidence 99999999999999999999998554332 2233569999999999999888888 9999999999877765
Q ss_pred cceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHH
Q 000133 818 WQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLIC 897 (2100)
Q Consensus 818 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~ 897 (2100)
...+...+.+++|++.|++|++.+|+.|..+|.+||.
T Consensus 728 -~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~------------------------------------------ 764 (2102)
T PLN03200 728 -AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK------------------------------------------ 764 (2102)
T ss_pred -HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh------------------------------------------
Confidence 3445567889999999999999999999999999943
Q ss_pred HhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCccee--cCchhH
Q 000133 898 AAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI--FGENLA 975 (2100)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~ 975 (2100)
+++..+++.++..+.+.+.+|+++|...+ .+...+.+++.+|+.|+|++++.+|+.++|.++ .|+++.
T Consensus 765 -----~~~~~~~~~~~~~~~g~v~~l~~~L~~~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~ 834 (2102)
T PLN03200 765 -----HFPVDDVLKDSVQCRGTVLALVDLLNSTD-----LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLE 834 (2102)
T ss_pred -----CCChhHHHHHHHHHhCcHHHHHHHHhcCC-----cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchH
Confidence 33445556667778999999999999877 567788999999999999999999999999999 999999
Q ss_pred HHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHH
Q 000133 976 IWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILAN 1055 (2100)
Q Consensus 976 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~ 1055 (2100)
+++.|+..++| ..|| |+|++|++
T Consensus 835 ~l~~~l~~~~p-----------------------------------------------~~~~----------kai~il~~ 857 (2102)
T PLN03200 835 PLVRCLAEGHP-----------------------------------------------LVQD----------KAIEILSR 857 (2102)
T ss_pred HHHHHHHcCCh-----------------------------------------------HHHH----------HHHHHHHH
Confidence 99999976666 5778 99999999
Q ss_pred hhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccc--------hhhHHhhcccccchhhHHhhhHhhhhccCCcHHH
Q 000133 1056 LLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAA--------GGLISLLGCADADVQDLLDLSEEFALVRYPDQVA 1127 (2100)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1127 (2100)
+|+|+ ++++|.....+++++.++|+++++ ||++.|+|+++.+.+..
T Consensus 858 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 911 (2102)
T PLN03200 858 LCRDQ---------PVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLV----------------- 911 (2102)
T ss_pred HhccC---------hhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHH-----------------
Confidence 99999 999999999999999999999987 99999999999999887
Q ss_pred HHhhhhhcccccCccccccHHHHHHhcCC--------------------------------CCCCCCchHHHHHHHHHHh
Q 000133 1128 LERLFRVEDIRVGATSRKAIPALVDLLKP--------------------------------IPDRPGAPFLALGFLIQLA 1175 (2100)
Q Consensus 1128 ~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~--------------------------------~~~~~~~~~~Al~~L~~la 1175 (2100)
++.+..++..+..|.+||+|++. +|+++++++.|+|+|+.|+
T Consensus 912 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~ 985 (2102)
T PLN03200 912 ------MEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIA 985 (2102)
T ss_pred ------HHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHH
Confidence 77778889999999999999972 3778999999999999999
Q ss_pred hcCchhhhHHHhcCcHHHHHH----HHhcCCc----chHHHHHHH-HHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHH
Q 000133 1176 KDCPSNKIVMVEAGALEALTK----YLSLGPQ----DATEEAATD-LLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRG 1246 (2100)
Q Consensus 1176 ~~~~~~r~~i~e~G~i~~L~~----~L~s~~~----~~~~~~~~~-ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~ 1246 (2100)
++++.||..|+|+|++++|.+ |++. ++ |..+.++.+ +|++||+|++++++....+++|.|..+|++++..
T Consensus 986 ~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1064 (2102)
T PLN03200 986 SHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETI 1064 (2102)
T ss_pred cCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHH
Confidence 999999999999999999999 5544 44 667778877 9999999999999999999999999999999888
Q ss_pred HHHHHHHH--------------------------------------------------------HHHhhcchhhhhhhhh
Q 000133 1247 ARYSAAKA--------------------------------------------------------LESLFSADHIRNAESA 1270 (2100)
Q Consensus 1247 ~r~~Aa~a--------------------------------------------------------L~~L~~~~~~~~~i~~ 1270 (2100)
+||+||++ |.+||+.+++|.....
T Consensus 1065 ~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a 1144 (2102)
T PLN03200 1065 DRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATA 1144 (2102)
T ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHH
Confidence 99999887 5566777888888888
Q ss_pred cCChHHHHHhhccCCh--hhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLE--REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
+++||+||++|++.++ ..+..|+..|..++.+++.++..|+ +.|+++.|.++++..........+..+|..++.++
T Consensus 1145 ~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~ma--eaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~~~~ 1222 (2102)
T PLN03200 1145 RKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMA--EAGALDALTKYLSLGPQDSTEEAASELLRILFSSP 1222 (2102)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHH--HcCCHHHHHHHHHhcCccchhHHHHHHHHHHhCCH
Confidence 9999999999998876 4488899999999988877666664 88999999999987655566778889999999999
Q ss_pred chHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 000133 1349 RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGK 1428 (2100)
Q Consensus 1349 ~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~ 1428 (2100)
+.+......+++++|+.+|++++...|.+|+.+|.+++..+.++......|+|++|+.++.++....++.++.+|.++.+
T Consensus 1223 e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~k 1302 (2102)
T PLN03200 1223 ELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSS 1302 (2102)
T ss_pred HHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCchhhHHH--HhcCcHHHHHHHhccC-ChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHH
Q 000133 1429 DRPSCKLEM--VKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSAL 1505 (2100)
Q Consensus 1429 ~~~~~k~~i--~~~~~i~~lv~~L~~~-~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~ 1505 (2100)
++...+..+ ++.+.+..++++|.+. +.+.+..++++|+.|++++.++..
T Consensus 1303 d~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~---------------------------- 1354 (2102)
T PLN03200 1303 GNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRST---------------------------- 1354 (2102)
T ss_pred CCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhh----------------------------
Confidence 987777777 7899999999999876 556677677777555444443311
Q ss_pred HHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHH
Q 000133 1506 QVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQ 1585 (2100)
Q Consensus 1506 ~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr 1585 (2100)
+...|.+++||.+|.++...+++.|+.+|.+|...++.++.+..++++-|++.++-..++...
T Consensus 1355 -----------------~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~ 1417 (2102)
T PLN03200 1355 -----------------PAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLH 1417 (2102)
T ss_pred -----------------HHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHH
Confidence 245567777777777766677899999999999999999999999999888888888899999
Q ss_pred HHHHHHHHHhhcCChh---HHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchh-----hhcccHHHHHHH
Q 000133 1586 QRAVKALVSIALTWPN---EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEF-----YLEVPVAVLVRL 1657 (2100)
Q Consensus 1586 ~~Al~AL~~Ls~~~~n---~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~-----~~~~~v~~Lv~l 1657 (2100)
+.|+++|.++++.+++ .|++.|+++.++-+|.. .+..+|+.|+.+|.-+.. +..+ ..+-+.|.|+.|
T Consensus 1418 E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~----c~~~lkekAaeLLrlL~~-~~~~~~~~~~~~~~~~~~~~l 1492 (2102)
T PLN03200 1418 EAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPE----APDSLCSAIAELLRILTN-NSSIAKGQSAAKVVEPLFLLL 1492 (2102)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHc----CCHHHHHHHHHHHHHhcc-chhhccccchhhhhHHHHHHH
Confidence 9999999999988888 38899999999999987 456778877777533332 2222 223355667777
Q ss_pred hhcCC-HHHHHHHHHHHH-HhccCChhhHHHHHHcccHHHHHHHHhcc--CcHHHHHHHHHHHhcCchhhhhhhchhhhh
Q 000133 1658 LRSGS-EGTVIGSLNALL-VLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRESKATKSAIL 1733 (2100)
Q Consensus 1658 l~~~~-~~~~~~a~~aL~-~L~~~~~~~~~~i~~~g~i~~Li~lL~s~--~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~ 1733 (2100)
++++. ..-+..|+++|. .+++++......+..++++++|+.+|+|+ .+|+.++++|++|..++.||+.++++++|.
T Consensus 1493 ~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~ 1572 (2102)
T PLN03200 1493 TRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVV 1572 (2102)
T ss_pred hccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchH
Confidence 76553 356677888888 67888888899999999999999999997 689999999999999999999999999999
Q ss_pred hhhhhccChhhHHHHHHHHHHHHhcchhhhh-----hHHHhhhhh--------------------------------chH
Q 000133 1734 PLSQYLLDPQTQAQQARLLATLALGDLFQNE-----GLARSADAV--------------------------------SAC 1776 (2100)
Q Consensus 1734 ~L~~~l~~~~~~~~~~~~~A~~~l~~~~~~~-----~l~~~~~~~--------------------------------~a~ 1776 (2100)
||++++.++....++.++.|++..++.|++. ++++.++.. -.+
T Consensus 1573 pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~ 1652 (2102)
T PLN03200 1573 PLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPV 1652 (2102)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeH
Confidence 9999999999999999999999999999766 343322110 146
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHHHhcccchhhhcch
Q 000133 1777 RALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856 (2100)
Q Consensus 1777 ~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~L~s~~~~~~~~~~ 1856 (2100)
+.|++++++. ++..+.+|+.+|..+...|...++.|++.|+|+.|+++|+||.++.. +|.+|+.|++|..+|+.-..
T Consensus 1653 ~~lvkl~~s~-~e~~~~~a~~~l~~~~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 1729 (2102)
T PLN03200 1653 AVLVKLLRST-SESTVVVALNALLVLERDDSSSAEQMAESGAIEALLELLRSHQCEEA--AARLLEALFNNVKVREMKAT 1729 (2102)
T ss_pred HHHHHHHhcc-chhHHHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHhccchhH--HHHHHHHHhcCcchhhhhhH
Confidence 6788888875 88899999999999998999999999999999999999999999965 99999999999887554322
Q ss_pred hh-HHHHHHHHhhccccCCCCcH---HHHHHH--hhhhccCCCccccCCCcc-ChHHHHHhhccC-CHhHHHHHHHHHHH
Q 000133 1857 ET-VRAITAAIEKELWATGTVNE---EYLKAL--NALFNNFPRLRATEPATL-SIPHLVTALKTG-SEATQEAALDALFL 1928 (2100)
Q Consensus 1857 ~~-~~~~~~l~~~~~~~~~~~~~---~~c~~l--~~~~~~~h~g~cs~~~tf-ci~~Lv~~L~~~-~~~~~eaal~aL~t 1928 (2100)
.+ +.|+ .+-+.+. ..+. .....| +.+|. |.|.+-..... --..||..||+. .++..--|+-||-+
T Consensus 1730 ~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1802 (2102)
T PLN03200 1730 KYAIAPL----SQYLLDP-QTRSQQARLLAALALGDLFQ--HEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQN 1802 (2102)
T ss_pred HHhcCcH----HHHhcCc-ccccHHHHHHHHHHhccchh--hhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 11 1111 2222233 2222 233333 77766 67666422222 257899999987 57888899999999
Q ss_pred HHHHHhcCCchhhhhHHHHHhcCcHHHHHHHHhCCchhHHHHHHHHhhc
Q 000133 1929 LRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCL 1977 (2100)
Q Consensus 1929 L~~~~~~~~~~~~~~~~l~~a~~i~~i~~~~~~~~~~~~~~a~~~le~i 1977 (2100)
|+|..... =++++||+||..++.++.+.+|..--.|-.++.-+
T Consensus 1803 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1845 (2102)
T PLN03200 1803 LVMHSRTN------KRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLL 1845 (2102)
T ss_pred HHHhccch------HHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHH
Confidence 99955444 49999999999999999998777666666666655
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=326.99 Aligned_cols=417 Identities=18% Similarity=0.200 Sum_probs=369.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHh-hccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKL-CNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
+|.|..-+-+.|-+.|..|..-++.+ +.......+.++++|.+|.++++++ ....-.+.+|+|+|.|++++.......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 46666777788888888888888874 5444556788899999999999995 556677899999999999998888999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh--hHHHHHHHHHHHHhcCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA--NGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~Aa~aL~~L~~~~ 557 (2100)
++++|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+...|++.+++.++.++.. ...+.+.|+|.|||+..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999998766 67899999999999866
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
.|. .++.. + ..++|.|.+++.+.++++--.|+|++.+|+.++.
T Consensus 233 nP~-----------P~w~~--------------------i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 233 NPP-----------PDWSN--------------------I------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred CCC-----------CchHH--------------------H------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 541 11111 1 1248999999999999999999999999999999
Q ss_pred hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 638 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 638 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
+..+++...|..+.|+.+|.+++..++..+.+.++|+..+. +.+...++.+|+++.+..+|.++...+|.+|||++.|+
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~-D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS-DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC-ccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 99999999999999999999999999999999999998775 46777799999999999999999999999999999999
Q ss_pred hcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
..+ .++.+.+++.+++|+|+.++.+.+-.++.+|.||+.+...+.-...++..++...|++++|+++|...+..+. +.
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii-ev 433 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII-EV 433 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch-hh
Confidence 976 5667777899999999999999999999999999999999888888899999999999999999999999888 89
Q ss_pred HHHHHHHHHHcCCCCC--CCC--cccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCC
Q 000133 797 ALDALAILSRSGGASG--HVK--PAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 857 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~--~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~ 857 (2100)
+++++.+.++.++..+ +.+ +.+...++.+++++.+..|+..+|..++++|..|++.+|++.
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 9999999999887422 222 245678888999999999999999999999999999998654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=352.37 Aligned_cols=415 Identities=20% Similarity=0.230 Sum_probs=367.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
.+.++..+.+.++..+..+...++.+-+... .....++..|.+|.+|.++. +.++.+|.+|+|+|.|++++..+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5567778888899889999999998765433 33455666799999999997 556999999999999999999999999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++|++|.+++++.+++.+++++|+|+|+|++.+++.+|..+.+.|++++|+.++...++ ...+.+.|+|.|||++.+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998776 788999999999999775
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
|. |.. +.+ ..++|.|..++.+.++++...|+|+|.+|+.+..+
T Consensus 228 P~-------------P~~------------------~~v------~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 228 PS-------------PPF------------------DVV------APILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred CC-------------CcH------------------HHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 41 110 001 12489999999999999999999999999999999
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALANL 717 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~~L 717 (2100)
..+.+++.|++|.|+.+|.+.+..++..|+++++|++.+. +.++..++..|+++.|..++. ++...+|++|+|++.|+
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997775 578888999999999999999 56666999999999999
Q ss_pred hcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
..+ .++...+++.+++|.|+.+++..+.++|.+|+||+.|+..+.. .....|++..|++++++++|...+..+. ..
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii-~v 426 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKII-LV 426 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHH-HH
Confidence 977 5577788899999999999999999999999999999997666 5678889999999999999988888886 99
Q ss_pred HHHHHHHHHHcCCCCCC-CCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCC
Q 000133 797 ALDALAILSRSGGASGH-VKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 857 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~ 857 (2100)
++++|.++++..+.... ..+++...++..++++++..+..++|..++++|..|+.+||+++
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999988876221 11788999999999999999999999999999999999998765
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=280.80 Aligned_cols=442 Identities=19% Similarity=0.214 Sum_probs=362.7
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHh
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL 170 (2100)
+-.++-+..+.-+--+++.+.+..|+-+...+...+. + -+......+++.++++ +++.++..+..+++|+
T Consensus 43 fyS~~plraltvL~ySDnlnlqrsaalafAeitek~v-----r--~Vsres~epvl~llqs---~d~~Iq~aa~~alGnl 112 (550)
T KOG4224|consen 43 FYSASPLRALTVLKYSDNLNLQRSAALAFAEITEKGV-----R--RVSRESNEPVLALLQS---CDKCIQCAAGEALGNL 112 (550)
T ss_pred ccCCCccchheeeeeccccccchHHHHHHHHHHHHHH-----H--HhhhhhhhHHHHHHhC---cchhhhhhhhhhhccc
Confidence 3344446666655567778877777777777766211 1 1233456667777776 5667888899999999
Q ss_pred ccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHH
Q 000133 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 250 (2100)
Q Consensus 171 ~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~ 250 (2100)
+... +++..|++.+|++.|+.-+-++..++|.++.+++++|+..+. ++.++...|++.++.+ |....|..+|+++.+
T Consensus 113 AVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~-nk~kiA~sGaL~pltr-Lakskdirvqrnatg 189 (550)
T KOG4224|consen 113 AVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS-NKVKIARSGALEPLTR-LAKSKDIRVQRNATG 189 (550)
T ss_pred eecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc-chhhhhhccchhhhHh-hcccchhhHHHHHHH
Confidence 9655 555668899999999998889999999999999999998754 8899999999999999 455566789999999
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
+|.|++. +.++|+.++.+||+|.|+.++.+.+ .++|++++.++.|+..+
T Consensus 190 aLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d---------~dvqyycttaisnIaVd--------------------- 238 (550)
T KOG4224|consen 190 ALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGD---------LDVQYYCTTAISNIAVD--------------------- 238 (550)
T ss_pred HHHHhhh-hhhhhhhhhccCCchhhhhhhccCC---------hhHHHHHHHHhhhhhhh---------------------
Confidence 9999997 8899999999999999999998765 78889999988887742
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccc--cHHHHHHh
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE--AKRLLVGL 408 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g--~i~~Lv~l 408 (2100)
...++.+.+.+ .++.|+.+
T Consensus 239 -----------------------------------------------------------~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 239 -----------------------------------------------------------RRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred -----------------------------------------------------------HHHHHHHHhcccchHHHHHHH
Confidence 11122333334 78899999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 409 ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 409 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
+++++++++..|..+|+||+.+ ..|+..|+++|++|.++++++++.-....+.+.+++|++- ++.+...|.++|.+.+
T Consensus 260 md~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~p 337 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRP 337 (550)
T ss_pred HhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhH
Confidence 9999999999999999999998 6788899999999999999999988888889999999995 8999999999999999
Q ss_pred HHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 000133 489 LVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA 567 (2100)
Q Consensus 489 Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~ 567 (2100)
|+.+|+-+ ++++|-+|..+|+||+..++.++..|.+.|++|.|..++.++.-.++.....++..|+...+.
T Consensus 338 LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~-------- 409 (550)
T KOG4224|consen 338 LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND-------- 409 (550)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--------
Confidence 99999977 667999999999999998889999999999999999999999999999888888888764322
Q ss_pred HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--
Q 000133 568 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-- 645 (2100)
Q Consensus 568 lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-- 645 (2100)
+..+-+.|.+|.|+.++.+.+.+++-+|+.+|.|++.+-+++. .+.+
T Consensus 410 ------------------------------k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Ya-rviEaw 458 (550)
T KOG4224|consen 410 ------------------------------KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYA-RVIEAW 458 (550)
T ss_pred ------------------------------HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHH-HHHHHh
Confidence 2234456779999999999999999999999999998755432 2222
Q ss_pred ----cCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 646 ----VKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 646 ----~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
.|+=..|++.+.++......-+.+++..|..
T Consensus 459 d~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 459 DHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2556678888888877778888888887743
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=270.07 Aligned_cols=442 Identities=21% Similarity=0.228 Sum_probs=361.0
Q ss_pred hhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHH
Q 000133 224 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCAL 303 (2100)
Q Consensus 224 ~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL 303 (2100)
...+-++.+--+--+++ .+.+..|+-+...+... ..+ -+....+.++..++++.+ ..+|..+..++
T Consensus 44 yS~~plraltvL~ySDn-lnlqrsaalafAeitek--~vr--~Vsres~epvl~llqs~d---------~~Iq~aa~~al 109 (550)
T KOG4224|consen 44 YSASPLRALTVLKYSDN-LNLQRSAALAFAEITEK--GVR--RVSRESNEPVLALLQSCD---------KCIQCAAGEAL 109 (550)
T ss_pred cCCCccchheeeeeccc-cccchHHHHHHHHHHHH--HHH--HhhhhhhhHHHHHHhCcc---------hhhhhhhhhhh
Confidence 33444555544433433 56778887777666542 111 133456777788887764 67888999999
Q ss_pred HHhhCC--CcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHH
Q 000133 304 ANISGG--LSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIE 381 (2100)
Q Consensus 304 ~nl~~~--~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~ 381 (2100)
.|++.. ++.+|..|+ +..+++.+.+..+.. +|..+..
T Consensus 110 GnlAVn~enk~liv~l~---------------------------------------Gl~~Li~qmmtd~ve--vqcnaVg 148 (550)
T KOG4224|consen 110 GNLAVNMENKGLIVSLL---------------------------------------GLDLLILQMMTDGVE--VQCNAVG 148 (550)
T ss_pred ccceeccCCceEEEecc---------------------------------------ChHHHHHHhcCCCcE--EEeeehh
Confidence 998873 344444432 223333344433333 6889999
Q ss_pred HHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 382 ALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 382 aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
|+.+|+..++++..+...|++.++.++-++++..+|+++..+|.|+... .++++.++.+|++|.|+.++++.+.++|++
T Consensus 149 CitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyy 227 (550)
T KOG4224|consen 149 CITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYY 227 (550)
T ss_pred hhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHH
Confidence 9999988899999999999999999988999999999999999999988 567888999999999999999999999999
Q ss_pred HHHHHHHhccCCcccHHHHHhcC--ChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCC
Q 000133 462 SVALLCLLSNENDDSKWAITAAG--GIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 539 (2100)
++.+++|++- ....++.+.+.+ .+|.|++++.+++++++-+|..+|.||+.+ .+++..|+++|.+|.++++++++.
T Consensus 228 cttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 228 CTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPM 305 (550)
T ss_pred HHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcc
Confidence 9999999994 677888899888 999999999999999999999999999985 688889999999999999999877
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-C
Q 000133 540 ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-K 618 (2100)
Q Consensus 540 ~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~ 618 (2100)
....-....++.|++.+.-+ ...+.+.|-+++|+.+|+.+ +
T Consensus 306 ~plilasVaCIrnisihplN--------------------------------------e~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 306 GPLILASVACIRNISIHPLN--------------------------------------EVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred hhHHHHHHHHHhhcccccCc--------------------------------------ccceecccchhHHHHHHhcCCc
Confidence 66666667777777765432 11355677799999999875 5
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHH
Q 000133 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVL 698 (2100)
Q Consensus 619 ~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~l 698 (2100)
+++|-+|...|+||+..+.+++..+...|+||.|..++.+..-.++..-..|+..|+.. +..+..+.+.|.++.|+++
T Consensus 348 EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~ 425 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPW 425 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecc
Confidence 67999999999999998888999999999999999999999999999988999888665 3677789999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCcHHHHHHH------HcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 699 AGSPVLEVAEQATCALANLILDSEVSEKAI------AEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 699 l~~~~~evr~~aa~aL~~L~~~~~~~~~~v------~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
+.+.+.|++.+|+.||.|++.+.+....++ ..++-..|.+++.++..-.+.-+.|.+.+++....
T Consensus 426 t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 426 TGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred cCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998866555554 25777889999999999999999999999997554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=287.52 Aligned_cols=406 Identities=17% Similarity=0.183 Sum_probs=331.5
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCc-chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 265 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~ 265 (2100)
.+.++..+.++++..+..+...++.+.+... +....++..|.+|.|++.|....++.++.+|+|+|.|+++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6778888899999888888888877764433 356677778999999999987776789999999999999988777666
Q ss_pred HHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhc
Q 000133 266 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 345 (2100)
Q Consensus 266 i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~ 345 (2100)
++++|++|.++.++.
T Consensus 148 vv~agavp~fi~Ll~----------------------------------------------------------------- 162 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLS----------------------------------------------------------------- 162 (514)
T ss_pred cccCCchHHHHHHhc-----------------------------------------------------------------
Confidence 666666666665554
Q ss_pred cccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHH
Q 000133 346 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL 425 (2100)
Q Consensus 346 ~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 425 (2100)
+++.++++.|+++|+
T Consensus 163 -----------------------------------------------------------------s~~~~v~eQavWALg 177 (514)
T KOG0166|consen 163 -----------------------------------------------------------------SPSADVREQAVWALG 177 (514)
T ss_pred -----------------------------------------------------------------CCcHHHHHHHHHHHh
Confidence 445566677777777
Q ss_pred HhhccCccchHHHHhCCcHHHHHHhhCCCCH-HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHH
Q 000133 426 KLCNNEGSLWRALQGREGIQLLISLLGLSSE-QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDS 504 (2100)
Q Consensus 426 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A 504 (2100)
|++.+++.++..+.+.|++++|+.++..++. ...+.+.|+|.|||++....-..-.-..++|.|..++.+.++++...|
T Consensus 178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da 257 (514)
T KOG0166|consen 178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA 257 (514)
T ss_pred ccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777788888899999999999987765 778889999999998763333333334589999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHH
Q 000133 505 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL 584 (2100)
Q Consensus 505 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL 584 (2100)
+|+|.+|+.++++.-..+.+.|++|.|+++|.+.++.++..|.++++|++..++.
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~------------------------- 312 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE------------------------- 312 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH-------------------------
Confidence 9999999988888889999999999999999999888888888888887654332
Q ss_pred HHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHH
Q 000133 585 KSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECI 663 (2100)
Q Consensus 585 ~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v 663 (2100)
....+.+.+++|.|..++. +..+.+++.|||++.||+.++++..++++.+|.+|.|+.++...+.++
T Consensus 313 ------------QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 313 ------------QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred ------------HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 1235667889999999998 667779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-----C----cHHHHHHHHcCcHH
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-----D----SEVSEKAIAEEIIL 734 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-----~----~~~~~~~v~~~~v~ 734 (2100)
+++|+++|.|++.+....+-.-+++.|.+++|+.+|.-.+..+...+..+|.||.. . ++....+-+.+.+.
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld 460 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD 460 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh
Confidence 99999999999998877676679999999999999988899999999999999961 1 23334444678888
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHH
Q 000133 735 PATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 735 ~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
.+-.+-.+++.++-..|..-+..-.
T Consensus 461 kiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 461 KIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhc
Confidence 7766655556567666665554444
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=263.42 Aligned_cols=422 Identities=18% Similarity=0.184 Sum_probs=342.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh
Q 000133 96 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 175 (2100)
Q Consensus 96 ~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~ 175 (2100)
.+|.|..-|.|+|.+.+..|..-++.+-+ ..++.....+++.|+||.+++++... +....+-.+.|+|.|+++...
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS--~E~~PPIq~VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLS--KETSPPIQPVIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhc--cccCCCchhHHhccccHHHHHHHHhc--chhHHHHHHHHHHhhhccCcc
Confidence 57999999999999998888877776655 23444456689999999999999653 223366678999999998887
Q ss_pred hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 000133 176 GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKS 254 (2100)
Q Consensus 176 ~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~ 254 (2100)
...+.++++|+||.++++|.+++.++++++.++|+|++.+++..+..+...|++.+++.++.++. +..+.+++.|.|+|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 77777899999999999999999999999999999999999988999999999999999998754 36899999999999
Q ss_pred hhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhh
Q 000133 255 LSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTL 334 (2100)
Q Consensus 255 Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 334 (2100)
|+.+..-.-..-.-..++|.|..++.+.+ +++.-.|+||+..++.+..
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D---------~evlvDA~WAiSYlsDg~~----------------------- 275 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRD---------PEVLVDACWAISYLSDGPN----------------------- 275 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcC---------HHHHHHHHHHHHHhccCcH-----------------------
Confidence 99863211111111235778888876654 5666777888776665310
Q ss_pred hhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCH
Q 000133 335 GALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN 414 (2100)
Q Consensus 335 gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 414 (2100)
+-...+.+.|..+.|+++|.+++.
T Consensus 276 --------------------------------------------------------E~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 276 --------------------------------------------------------EKIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred --------------------------------------------------------HHHHHHHhcCCcHHHHHHhcCccc
Confidence 011234567888889999999999
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
.+|..|++.++|+..+++...+.++++|+++.+..+|.++...++.+|||.++|++.++.+..+++++.+.+|+|+.+|.
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls 379 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS 379 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhc
Q 000133 495 SGSAKAKEDSASILRNLCNHS---EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 571 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~ 571 (2100)
..+-.++..|||++.|.+.+. |+.-+.+++.|.+.+|.++|.-.+.++.+.+..++.|+...++. -.+.
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~------d~~~-- 451 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ------DRLR-- 451 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH------HHHh--
Confidence 999999999999999998753 45666778899999999999988888888888888887654321 0000
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 572 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
...+.+.....+.++||+..+..+-.+.+..+-..|-..+-..+..
T Consensus 452 ------------------~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 452 ------------------YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred ------------------ccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 1112223445677789999999999999999999999888888754
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-24 Score=266.11 Aligned_cols=1025 Identities=17% Similarity=0.147 Sum_probs=632.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH-hhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 404 LLVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
.|++-+.+.|.+.|..|+.-|.+ |-.+. ..-+.=-+...+..++++|.+.+.+||..|+.+|+-|++..++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~-- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET-- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH--
Confidence 46666778888899888877765 22221 000000134578999999999999999999999999986444432221
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
.+..|..-+-++.++.|.-+.-.|...-..-+..........+.+.+...+..... ..
T Consensus 86 --~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~--------------~q------ 143 (1233)
T KOG1824|consen 86 --IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAIS--------------KQ------ 143 (1233)
T ss_pred --HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhh--------------hc------
Confidence 34555555555667777666555554443222221122223334444433332110 00
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHhccC--chhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 563 SQLTALLTSDLPESKVYVLDALKSMLSVVS--FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640 (2100)
Q Consensus 563 ~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~ 640 (2100)
.+...++..+.+.++.+....+ .++ .+.++ ...+..-+.+....+|+.|+.+|+.++...+..
T Consensus 144 --------e~~sai~~e~lDil~d~lsr~g~ll~~-fh~~i-----l~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~- 208 (1233)
T KOG1824|consen 144 --------EDVSAIKCEVLDILADVLSRFGTLLPN-FHLSI-----LKCLLPQLQSPRLAVRKKAITALGHLASSCNRD- 208 (1233)
T ss_pred --------ccchhhHHHHHHHHHHHHHhhcccCcc-hHHHH-----HHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-
Confidence 0111123333333333322111 111 23333 556666677888899999999999998764322
Q ss_pred HHHHhcCchHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh---CCCCHHHHHHHHHHHHH
Q 000133 641 ESSIAVKTLWSVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALAN 716 (2100)
Q Consensus 641 ~~~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll---~~~~~evr~~aa~aL~~ 716 (2100)
.-.+.+..|++.|..+ .....+.-.++|+.+++... .|..-.-...+|.+.++. ...++|.|+.+..++..
T Consensus 209 ---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag--~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 209 ---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG--HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred ---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc--chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 2235788888888544 45566777788888876543 222223345677788888 67899999999999999
Q ss_pred HhcCcHHHHHHHHcCcHHHHHHHHccCCh----------------------------------hHHHHHHHHHHHHHhcC
Q 000133 717 LILDSEVSEKAIAEEIILPATRVLCEGTI----------------------------------SGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 717 L~~~~~~~~~~v~~~~v~~L~~ll~~~~~----------------------------------~~~~~Aa~aL~~l~~~~ 762 (2100)
+..+++.......+.++..+...+.++++ .+|+.|++++..+..+.
T Consensus 284 fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR 363 (1233)
T KOG1824|consen 284 FLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR 363 (1233)
T ss_pred HHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 99887776666677888888888866322 38999999999988766
Q ss_pred ccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCCh--
Q 000133 763 KIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATP-- 840 (2100)
Q Consensus 763 ~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-- 840 (2100)
... +.... ...=+.+|...+.- ++.++.+.+.++..++++.+.. .-....++.++ ..|.+
T Consensus 364 ~E~--L~~~~--q~l~p~lI~RfkER-EEnVk~dvf~~yi~ll~qt~~~-------~~~~~d~d~~e------~~g~~s~ 425 (1233)
T KOG1824|consen 364 LEM--LPDFY--QTLGPALISRFKER-EENVKADVFHAYIALLKQTRPV-------IEVLADNDAME------QGGTPSD 425 (1233)
T ss_pred HHH--HHHHH--HHhCHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCCCC-------cccccCchhhh------ccCCccc
Confidence 542 11100 11224556655543 4444499999999999888741 11111223333 12222
Q ss_pred --hHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhc--cccc
Q 000133 841 --LLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNH--SNSC 916 (2100)
Q Consensus 841 --~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 916 (2100)
.+++....++.-+ .+.+.+.....|.+.--.+..+... +++ ..+-
T Consensus 426 ~~~L~~~~~~iVkai-----------------------~~qlr~ks~kt~~~cf~lL~eli~~--------lp~~l~~~~ 474 (1233)
T KOG1824|consen 426 LSMLSDQVPLIVKAI-----------------------QKQLREKSVKTRQGCFLLLTELINV--------LPGALAQHI 474 (1233)
T ss_pred hHHHHhhhHHHHHHH-----------------------HHHHhhccccchhhHHHHHHHHHHh--------Ccchhhhcc
Confidence 3333333333222 2233444444555443333333322 211 1112
Q ss_pred hhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCccee---cCchhHHHHHHHHhccCccchhhh
Q 000133 917 APLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI---FGENLAIWLLCVLACHDEKCKIVI 993 (2100)
Q Consensus 917 ~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 993 (2100)
.-.+...+..|...+ +.+...++++.++-+ ....+++.+| ++-..++...++.+.++ |++
T Consensus 475 ~slvpgI~~~l~DkS-----sss~~ki~~L~fl~~--------~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy---Kis- 537 (1233)
T KOG1824|consen 475 PSLVPGIIYSLNDKS-----SSSNLKIDALVFLYS--------ALISHPPEVFHPHLSALSPPVVAAVGDPFY---KIS- 537 (1233)
T ss_pred cccchhhhhhcCCcc-----chHHHHHHHHHHHHH--------HHhcCChhhcccchhhhhhHHHHHhcCchH---hhh-
Confidence 223444444444333 345567778877775 4445666666 77788889999999888 333
Q ss_pred hhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHH------hcchhh-----------------hhhhhhhchH
Q 000133 994 MEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL------FQDRDI-----------------IRAHATMKAI 1050 (2100)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~-----------------~~~~~~~~~i 1050 (2100)
+-|+-+.-+.+..- -+ .++-..=+..-+++.++..++ .+|.+| ........+.
T Consensus 538 --aEAL~v~~~lvkvi-rp-l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 538 --AEALLVCQQLVKVI-RP-LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred --HHHHHHHHHHHHHh-cc-cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22232222221110 11 011111344556777777776 666777 2234556778
Q ss_pred HHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHh
Q 000133 1051 PILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALER 1130 (2100)
Q Consensus 1051 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1130 (2100)
|+|...++++ +.|-.|+.|+.-+...+..=....+. ..++..+....+++.+.+ +.+.+..
T Consensus 614 ~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~l----~~il~~l~~flrK~~r~l-------------r~~~l~a 674 (1233)
T KOG1824|consen 614 PILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPVL----TEILPELASFLRKNQRAL-------------RLATLTA 674 (1233)
T ss_pred HHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhhH----HHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 8888888877 88888888888777666543222211 155778888888998888 7777888
Q ss_pred hhhhcccccCccccccHHHHHHhcCCC--CCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHH
Q 000133 1131 LFRVEDIRVGATSRKAIPALVDLLKPI--PDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEE 1208 (2100)
Q Consensus 1131 L~~~~~~~~~~~~~~~i~~Lv~~l~~~--~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~ 1208 (2100)
+..+...+.+...+..++.++..+.+- ....+....|+..|+.++..-+..- .-...-.++.++.+++|+.- |..
T Consensus 675 ~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spll--qg~ 751 (1233)
T KOG1824|consen 675 LDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLL--QGG 751 (1233)
T ss_pred HHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccc--cch
Confidence 888888888888899998888877543 1122345678888888887666432 22334578888888888632 333
Q ss_pred HHHHHHHHh----h-cCHHH--------------------------------Hhhhc------ccCcHHHHHHHHhcC--
Q 000133 1209 AATDLLGIL----F-SSAEI--------------------------------RRHES------AFAAVSQLVAVLRLG-- 1243 (2100)
Q Consensus 1209 ~~~~ll~~l----~-~~~~~--------------------------------~~~~~------~~~al~~Li~~L~~~-- 1243 (2100)
+...++..+ . .+++. ...+. +......|+.=+++.
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s 831 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKS 831 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCC
Confidence 333322210 0 00100 00000 011122233323322
Q ss_pred CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchh--hHHHHhhhcc-----
Q 000133 1244 GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSR--ALAVADVEMN----- 1316 (2100)
Q Consensus 1244 ~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~--~~~~~~v~~g----- 1316 (2100)
++..|.+|.-.|+.+ +...+.....+....+++.+++++++++.+|..||++++.++... +.+...++..
T Consensus 832 ~~~ikvfa~LslGEl---gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Qy 908 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGEL---GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQY 908 (1233)
T ss_pred chhHHHHHHhhhhhh---ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHH
Confidence 345566664444444 333334444556678889999999999999999999999987655 4444333443
Q ss_pred -hhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHH---------------HhhcChHHHHHHHhcCCchHHHHHHH
Q 000133 1317 -AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTV---------------AAARCVEPLVSLLVTEFSPAQHSVVR 1380 (2100)
Q Consensus 1317 -al~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~---------------~~~~~i~~Lv~lL~~~~~~~~~~A~~ 1380 (2100)
.+++|.+.+.+.+-+..+..+.++|+.|+.+.++..+- -....+|.|-..++++++..|..++.
T Consensus 909 LLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 909 LLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhh
Confidence 57888888887766688999999999999875543211 12335677777888889988988888
Q ss_pred HHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHH
Q 000133 1381 ALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSA 1460 (2100)
Q Consensus 1381 aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~ 1460 (2100)
+....-.+............|...+.+++++|.+||+.|+.++...+++.|..... .++.++..|++++...++.
T Consensus 989 avKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrD-----llpeLLp~Ly~eTkvrkel 1063 (1233)
T KOG1824|consen 989 AVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRD-----LLPELLPLLYSETKVRKEL 1063 (1233)
T ss_pred eeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHHHHHhhhhhHhh
Confidence 87655543333333344556889999999999999999999999999987665444 6778888888776554443
Q ss_pred HHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCC
Q 000133 1461 FAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPA 1540 (2100)
Q Consensus 1461 aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~ 1540 (2100)
+.+. -++|+-+.++ +|-+.++.|-++++.|.+....+ .....++..+..-|++.
T Consensus 1064 IreV------------------eMGPFKH~VD---dgLd~RKaaFEcmytLLdscld~----~dit~Fl~~~~~GL~Dh- 1117 (1233)
T KOG1824|consen 1064 IREV------------------EMGPFKHTVD---DGLDLRKAAFECMYTLLDSCLDR----LDITEFLNHVEDGLEDH- 1117 (1233)
T ss_pred hhhh------------------cccCcccccc---chHHHHHHHHHHHHHHHHhhhhh----ccHHHHHHHHHhhcchh-
Confidence 3222 3788888777 88999999999999997654433 24455677777777665
Q ss_pred HHHHHHHHHHHHHhhccccccccccccCchHHHHHHhc------------cCCHHHHHHHHHHHHHhhcCC
Q 000133 1541 PAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG------------SGIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1541 ~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~------------s~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
-++|+.....|.+++.-........-+..++||-+..+ ....++++.|++|+..+.+-|
T Consensus 1118 ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip 1188 (1233)
T KOG1824|consen 1118 YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIP 1188 (1233)
T ss_pred hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccc
Confidence 78999999999999875555444444456677776663 255789999999999986554
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-18 Score=219.62 Aligned_cols=526 Identities=16% Similarity=0.116 Sum_probs=376.5
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC---CHHHHHHHHHHHHhhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLC 82 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~---~~~v~~~aa~~L~~L~ 82 (2100)
...+++...+|.+=+. -.+|.++...++.|++..++...++.. ...+..|.+.|+++ +.+.-.+...++-.++
T Consensus 120 a~~~~~d~yiE~lYe~---~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYED---IPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4588899999988753 367999999999999999988887654 46788899999764 3356666666666666
Q ss_pred ccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc---cCCCCcccccchhccCChHHHHHHhhccCCCcchH
Q 000133 83 KENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ---GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVV 159 (2100)
Q Consensus 83 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~---~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v 159 (2100)
.-.+-..-+.....-...++++. -+.+++-.+ ...+.. ........++.+.+ ....+-.+++. ++ .+
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie---~Elkr~~~w-~~~l~~~~~~~~~~~~~~~~~~~--~~kk~~~l~~k---Qe-qL 265 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIE---HELKRHDLW-QEELRKKKKAAEEKPEAKKDYEK--ELKKLQTLIRK---QE-QL 265 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHH-HHHHHhhhhhhccchhhhhhHHH--HHHHHHHHHHH---HH-HH
Confidence 54444444444433333344433 233332211 111111 00000000110111 12223333332 22 34
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCC
Q 000133 160 DNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG 239 (2100)
Q Consensus 160 ~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 239 (2100)
...+...|.|++.+. .....|+..|+|+.|+++|.+++.++...+..+|.+|+...+ ++..+.+.|.++.|++++.+.
T Consensus 266 lrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCC
Confidence 446778899999666 444558999999999999999999999999999999987766 889999999999999999986
Q ss_pred CCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccc
Q 000133 240 NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQ 319 (2100)
Q Consensus 240 ~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~ 319 (2100)
+ .+++..+.++|.|||. +++.|..+++.|.+|.|+.++..++ .+..+...|.|+|...+.
T Consensus 344 ~-~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iLy~LS~dd~~------- 403 (708)
T PF05804_consen 344 N-EDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN-----------FREVALKILYNLSMDDEA------- 403 (708)
T ss_pred C-HHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHHHHhccCHhh-------
Confidence 6 5899999999999998 7899999999999999999997542 456788999999974321
Q ss_pred cccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcc
Q 000133 320 SLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS 399 (2100)
Q Consensus 320 ~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~ 399 (2100)
+. + |...+.++.+++++-.++.+.++..++..+.+|+.++.+...+.+.
T Consensus 404 -------r~-~-----------------------f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g 452 (708)
T PF05804_consen 404 -------RS-M-----------------------FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG 452 (708)
T ss_pred -------HH-H-----------------------HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence 11 1 1112344555565555555445666677777889999999999999
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
++++.|+...- ..++- ....++|++.+.+..+..+. +.|..|+.++.. ++++...++.++|+||...+.+..
T Consensus 453 ~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 453 NGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred CcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHH
Confidence 99999987654 34432 34699999999766666554 578888888876 477888999999999986444444
Q ss_pred HHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHH
Q 000133 478 WAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHL 553 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L 553 (2100)
..+.+.+.+|.|.++|..+ .+++...++..++.++. ++.+...+.+.|.++.|+.+|+.. +.+..-....++.+|
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 4455679999999999866 56788889999999997 478888899999999999999874 456677777777777
Q ss_pred hcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 554 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
..|.+. ....+...+++..|+.++.+.++++|+-|-.+|--++
T Consensus 606 l~h~~t-------------------------------------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 606 LFHEET-------------------------------------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HcChHH-------------------------------------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 665432 1112334556788999999999999999999999888
Q ss_pred cCChhhHHH
Q 000133 634 ETRKDLRES 642 (2100)
Q Consensus 634 ~~~~~~~~~ 642 (2100)
..+++....
T Consensus 649 e~d~~w~~r 657 (708)
T PF05804_consen 649 EYDEEWAER 657 (708)
T ss_pred HhCHHHHHH
Confidence 876554333
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-18 Score=220.01 Aligned_cols=392 Identities=19% Similarity=0.180 Sum_probs=310.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS 137 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~ 137 (2100)
.+-.+++.. +..-.-+...|.+++.+.....++...|+++.|+++|.+++.+....+...|.+||. ...++..|.
T Consensus 254 k~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi----~~ENK~~m~ 328 (708)
T PF05804_consen 254 KLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI----FKENKDEMA 328 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence 334444443 333345677899999999999999999999999999999999999999999999998 334577799
Q ss_pred ccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCc
Q 000133 138 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV 217 (2100)
Q Consensus 138 ~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~ 217 (2100)
+.|++|.|..++.+.+ ..+...+++.|.||++++ ..+..|++.|++|.|+.+|.++ ..+..+..+|.+++..++
T Consensus 329 ~~giV~kL~kLl~s~~---~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~ 402 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSEN---EDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE 402 (708)
T ss_pred HcCCHHHHHHHhcCCC---HHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh
Confidence 9999999999998743 346778999999999766 5678899999999999999854 566778999988887654
Q ss_pred chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHH
Q 000133 218 SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQE 297 (2100)
Q Consensus 218 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~ 297 (2100)
.+..+...+++|.+++++...++..+...++..+.||+. ++.+.+.+.+.||++.|+....... ++-
T Consensus 403 -~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~--------D~l--- 469 (708)
T PF05804_consen 403 -ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTR--------DPL--- 469 (708)
T ss_pred -hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcc--------cHH---
Confidence 888898899999999998876666778889999999998 6788889999999999988764321 111
Q ss_pred HHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHH
Q 000133 298 NAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQE 377 (2100)
Q Consensus 298 ~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~ 377 (2100)
....++|++.+..
T Consensus 470 -LlKlIRNiS~h~~------------------------------------------------------------------ 482 (708)
T PF05804_consen 470 -LLKLIRNISQHDG------------------------------------------------------------------ 482 (708)
T ss_pred -HHHHHHHHHhcCc------------------------------------------------------------------
Confidence 1235566654210
Q ss_pred HHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC--
Q 000133 378 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-- 454 (2100)
Q Consensus 378 ~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-- 454 (2100)
..+..+ .+.+..|+..+.. .+++....+..+|+||...+.+..+.+.+.+.+|.|..+|..+
T Consensus 483 -------------~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 483 -------------PLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred -------------hHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC
Confidence 111111 1234445555553 4678889999999999987666555566778999999999754
Q ss_pred CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh-CCcHHHH
Q 000133 455 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVES-ADAVPAL 531 (2100)
Q Consensus 455 ~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~-~g~i~~L 531 (2100)
.++++.+++..++.++. ++.....+.+.|.++.|+.+|... +.+..-+.+++++.+..| ++.|..+.+ .+++..|
T Consensus 548 ~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~yl 625 (708)
T PF05804_consen 548 EDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYL 625 (708)
T ss_pred ChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHH
Confidence 56788899999999995 788889999999999999999865 789999999999999998 566666655 7788999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 532 LWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 532 v~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++++++.++.+++.|-.+|--++..+
T Consensus 626 idL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 626 IDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998887776644
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-19 Score=218.58 Aligned_cols=421 Identities=20% Similarity=0.209 Sum_probs=306.9
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
--+|..+.+|.+.++.++.+|+..+.++|..+. .|..+.+.|+||.||.+|.+.+.+++..|+.||+||.++...
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~---- 308 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKST---- 308 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCC----
Confidence 347888999999999999999999999996554 678888999999999999999999999999999999984221
Q ss_pred ccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLAC 211 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~ 211 (2100)
+.++-+|.+.+||+.++++|+. .|.+++++.+.+|+|
T Consensus 309 ------------------------------------------~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 309 ------------------------------------------DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWN 346 (717)
T ss_pred ------------------------------------------cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 1233447788999999999987 788999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCC-------------CHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHH
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGN-------------EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMIN 277 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------------~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ 277 (2100)
|++.+. ....+-..++..|..-+-.+. +.++-.+++++|+|+++...+.|+.+.++ |.|..|+.
T Consensus 347 LSS~D~--lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~ 424 (717)
T KOG1048|consen 347 LSSNDA--LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF 424 (717)
T ss_pred ccchhH--HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence 988743 333344455666655442211 24688999999999999888999999877 66899998
Q ss_pred hhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcc-ccccCCC---ChhhhhhhhhhhHHHHHHhccccCCCCC
Q 000133 278 ATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG-QSLESCS---SPAQVADTLGALASALMIYDSKAESTKP 353 (2100)
Q Consensus 278 ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~-~~~~~~~---~~~~~~~~~gal~~ll~~l~~~~~~~~~ 353 (2100)
.++.. ...+..+..-+|++++.|+|++......+..-- +.+.... ...+..+..|+..
T Consensus 425 ~iq~~---i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~--------------- 486 (717)
T KOG1048|consen 425 SIQTA---IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFG--------------- 486 (717)
T ss_pred HHHHH---HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccccccccc---------------
Confidence 88642 234556778899999999999986443222100 0000000 0000000011110
Q ss_pred CCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCc
Q 000133 354 SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEG 432 (2100)
Q Consensus 354 ~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~ 432 (2100)
..+.+..+..-.-.+......|....++.....+.....++. +.++.+.+.++.+|-||+....
T Consensus 487 ---------------~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 487 ---------------FKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred ---------------chhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000000000000000011233444556777777777666665 6688999999999999998765
Q ss_pred cc----hHHH-HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC------CHHHH
Q 000133 433 SL----WRAL-QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG------SAKAK 501 (2100)
Q Consensus 433 ~~----~~~i-~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~vr 501 (2100)
.. +..+ .+..+.++|+++|+.+++.+.+.++.+|+||+. +..++..|. .++++.|++.|..+ +.++.
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 43 3334 567889999999999999999999999999995 677777776 78999999999765 36888
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCC
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~ 557 (2100)
..++.+|.|+...+..+...+.+.++++.|+.+.++. +++.-+.|+..|..|+.+.
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999988888888899999999999999874 6688899999998887644
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=174.64 Aligned_cols=363 Identities=17% Similarity=0.217 Sum_probs=271.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcch--hhhhhhhccCCchHHHHHHHhc---CCHHHHHHHHHHHHhhhccc
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE--NAFSAVGSHSQAVPVLVSLLRS---GSLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~--~~~~~i~~~~g~v~~L~~lL~~---~~~~v~~~aa~~L~~L~~~~ 85 (2100)
+.++...++.+-. +.-+.....|-.|+.+++ .+.++.+.+.|+.+.++.++.. ++..+-..+..+|..+.
T Consensus 61 i~~~~~~i~e~i~--~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--- 135 (461)
T KOG4199|consen 61 INETVDKIKEHIG--QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT--- 135 (461)
T ss_pred HHHhHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---
Confidence 5555555554332 112334444444544543 6788888889999988887753 34455566666676665
Q ss_pred hhhHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 86 ELRVKVLLGGCIPPLLGLLK--SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 86 ~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
..+..+....++..++++|. +++.++-......+..-+. .++.+++.|++.++.|.+...|....+. ..++ .+
T Consensus 136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~---~hE~nrQ~~m~~~il~Li~~~l~~~gk~-~~VR-el 210 (461)
T KOG4199|consen 136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI---MHEVNRQLFMELKILELILQVLNREGKT-RTVR-EL 210 (461)
T ss_pred cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHcccCcc-HHHH-HH
Confidence 34556777888999999995 4455555444444544444 5888899999999999999888876655 3355 46
Q ss_pred HHHHHHhccCCh---------hhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHH
Q 000133 164 TGALRNLSTSTE---------GFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLL 233 (2100)
Q Consensus 164 ~~aL~nL~~~~~---------~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv 233 (2100)
.++++.|..++| ++.+.+...|++..|++.++- -+|++...++.+|..++..++ .|..+.+.||+..|+
T Consensus 211 ~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~ 289 (461)
T KOG4199|consen 211 YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLL 289 (461)
T ss_pred HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHH
Confidence 889999987765 466668899999999999986 368899999999999998877 899999999999999
Q ss_pred HHhcCCCCHHH---HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC
Q 000133 234 KLLGSGNEASV---RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310 (2100)
Q Consensus 234 ~lL~~~~~~~v---~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~ 310 (2100)
.++.++++... .+.++..|+.|+. ++++|..|++.||.+.++.++...+ .++.+.+.++.++.-+|.
T Consensus 290 ~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~-------~~p~Vi~~~~a~i~~l~L-- 359 (461)
T KOG4199|consen 290 RCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHS-------DDPLVIQEVMAIISILCL-- 359 (461)
T ss_pred HHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcC-------CChHHHHHHHHHHHHHHh--
Confidence 99999777544 4778888999986 7899999999999999999985432 345555555555544432
Q ss_pred cchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCC
Q 000133 311 SNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNP 390 (2100)
Q Consensus 311 ~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~ 390 (2100)
+.|
T Consensus 360 -----------------------------------------------------------------------------R~p 362 (461)
T KOG4199|consen 360 -----------------------------------------------------------------------------RSP 362 (461)
T ss_pred -----------------------------------------------------------------------------cCc
Confidence 345
Q ss_pred ccchhhhccccHHHHHHhhcCC--CHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHH
Q 000133 391 LLSIKLENSEAKRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCL 468 (2100)
Q Consensus 391 ~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~n 468 (2100)
++...+.+.|+-...++.|+.. ...+|++||+.++|+...+.++++.+.. .|++.|+...+..++.+...+-.+|+.
T Consensus 363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 5555666777777777777743 4579999999999999998888877765 678888888888899999999999999
Q ss_pred hccC
Q 000133 469 LSNE 472 (2100)
Q Consensus 469 Ls~~ 472 (2100)
|.++
T Consensus 442 LGc~ 445 (461)
T KOG4199|consen 442 LGCD 445 (461)
T ss_pred cCcc
Confidence 9864
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-16 Score=196.66 Aligned_cols=372 Identities=18% Similarity=0.196 Sum_probs=272.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS---SAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
.|+.+|... .+.++++.|..+..+++.+..+++.||+|.|+.+|... +.+.+..|-.||+||-.....+..+++
T Consensus 201 sllsml~t~---D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTD---DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccC---CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 456666655 45688999999999999999999999999999999754 456788899999999884332222333
Q ss_pred chhccCChH-------HHHHHhhccCC--CcchHHH---HHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC-----
Q 000133 135 IFSTEGVVP-------VLWEQLKNGLK--SGNVVDN---LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG----- 197 (2100)
Q Consensus 135 ~~~~~g~vp-------~L~~lL~~~~~--~~~~v~~---~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~----- 197 (2100)
.+.-.-++. .+|.++..+.. .+..++. .|+.+|..+++ +++++++|-+.|+++.+-+|+.-.
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 222122222 24445544321 1111222 34555666664 568999999999999999988631
Q ss_pred -------CHHHHHHHHHHHHHHhhcCcchhhHHh-hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHH-HHHh
Q 000133 198 -------QSSTQAHVCFLLACMMEEDVSVCSRVL-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR-EIAG 268 (2100)
Q Consensus 198 -------~~~v~~~a~~~L~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~-~i~~ 268 (2100)
.-.+|.++..+|.||.+++..++..+. ..|.+..+|..|.+.. .++...-+.+|+||+++-+.+-+ .+.+
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHh
Confidence 235789999999999999998888775 4689999999999876 48999999999999997766554 5556
Q ss_pred CCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcccc
Q 000133 269 SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKA 348 (2100)
Q Consensus 269 ~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~ 348 (2100)
.|-+..|..+.-...+ +......+.||+||+.+ +..+...+.+..|+|++++.+|.
T Consensus 436 ~GsVtaLa~~al~~~k--------EsTLKavLSALWNLSAH-------------cteNKA~iCaVDGALaFLVg~LS--- 491 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKK--------ESTLKAVLSALWNLSAH-------------CTENKAEICAVDGALAFLVGTLS--- 491 (2195)
T ss_pred hhhHHHHHHHHHHhcc--------cchHHHHHHHHhhhhhc-------------ccccchhhhcccchHHHHHhhcc---
Confidence 7888888876644332 23456677888888874 23455566666666666555433
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 000133 349 ESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLC 428 (2100)
Q Consensus 349 ~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 428 (2100)
|..+. ..-.+.+.+-.+|+|.+
T Consensus 492 --------------------------------------Y~~qs--------------------~tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 492 --------------------------------------YEGQS--------------------NTLAIIESAGGILRNVS 513 (2195)
T ss_pred --------------------------------------ccCCc--------------------chhhhhhcCccHHHHHH
Confidence 00000 11122333344444433
Q ss_pred ---ccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHH
Q 000133 429 ---NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSA 505 (2100)
Q Consensus 429 ---~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~ 505 (2100)
..++.+++.++++..+..|+..|++++-.+.-++|++|+||+..+++.++.+.+.|+++.|.+++.+.+..+-+.++
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh
Q 000133 506 SILRNLCNHSE 516 (2100)
Q Consensus 506 ~aL~~L~~~~~ 516 (2100)
.+|.||..+-+
T Consensus 594 aALrNLln~RP 604 (2195)
T KOG2122|consen 594 AALRNLLNFRP 604 (2195)
T ss_pred HHHHHHhcCCc
Confidence 99999987643
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-12 Score=168.70 Aligned_cols=856 Identities=13% Similarity=0.103 Sum_probs=470.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
+..|+.-|.+.+.++|.+|-++|.++...+. ..|.|..++. +.++++|..|+.-++.+... ...+-.
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l~ 73 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRLS 73 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcCC
Confidence 4567777788888999999999998875443 5777888885 56788999999999988872 111111
Q ss_pred chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 135 IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 135 ~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
.-.++..-..|+..+.+. ..+.++...+..+..++... ++.|.. .++.|.+..+|+++..|+.|..+|+.+.
T Consensus 74 ~e~~~siks~lL~~~~~E--~~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSE--TEPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHHhhh
Confidence 112233334455555442 33446666666666665432 235764 4778899999999999999999998887
Q ss_pred hcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchhhhhhh
Q 000133 214 EEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYA 292 (2100)
Q Consensus 214 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~ 292 (2100)
...+.....+ -....+.|.+.+..+.+. +|..|+.++..++...+.++...... .-+|.++..+.... +.+ +
T Consensus 147 ~~~~~~~~~~-~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i----~~~-d 219 (1075)
T KOG2171|consen 147 ETFGNTLQPH-LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI----QDG-D 219 (1075)
T ss_pred hhhccccchh-HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh----hcc-c
Confidence 5554321211 112345555666666655 99999999999887554333333222 34666776664332 111 1
Q ss_pred HHHHHHHHHHHHHhhCCCcc--------hhhhccccccCCCChhhhhhhhhhhHHHHHHhcccc---CCCCCCCchhhHH
Q 000133 293 QALQENAMCALANISGGLSN--------VISSLGQSLESCSSPAQVADTLGALASALMIYDSKA---ESTKPSDPLIVEQ 361 (2100)
Q Consensus 293 ~~l~~~a~~aL~nl~~~~~~--------~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~---~~~~~~~~~~i~~ 361 (2100)
......+..+|..+....+. .+...-+...+......++ .-++..++...+... .....+.+ .+.+
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R--~~ALe~ivs~~e~Ap~~~k~~~~~~~-~lv~ 296 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR--HLALEFLVSLSEYAPAMCKKLALLGH-TLVP 296 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH--HHHHHHHHHHHHhhHHHhhhchhhhc-cHHH
Confidence 22223333444333321111 1111111112222222222 123443333333100 00000111 1222
Q ss_pred HHHhhcCCCC---------------ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 362 TLVNQFKPRL---------------PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 426 (2100)
Q Consensus 362 ~Lv~lL~~~~---------------~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (2100)
.+...+.... .+.....|.++|-.++.+=.-+. .-.-.++.+-.++++.++.-|.++..+|..
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2222222111 01234455666665543211000 011234456678889999999999999999
Q ss_pred hhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHH
Q 000133 427 LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSA 505 (2100)
Q Consensus 427 L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~ 505 (2100)
++.+..+.-.... ...++..+..|+++++.||..|+.+++.++.+.....+.-.....+|.|+..+.+. +++++.+|+
T Consensus 375 i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa 453 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAA 453 (1075)
T ss_pred HHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHH
Confidence 9998766433322 24678888899999999999999999999987776666666777888999998876 789999999
Q ss_pred HHHHHHhcCChhhHHHHHhCCcHH-HHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCC-c--
Q 000133 506 SILRNLCNHSEDIRACVESADAVP-ALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDL-P-- 574 (2100)
Q Consensus 506 ~aL~~L~~~~~~~~~~i~~~g~i~-~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~-~-- 574 (2100)
.++-|++...+...-.-.-.+.+. .|..+++++++.+++.+..+++..+..... ..+|.|...|...+ .
T Consensus 454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhh
Confidence 999999875433221111133444 333455678899999999999999876543 44555666665444 2
Q ss_pred -chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH---hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchH
Q 000133 575 -ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI---LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW 650 (2100)
Q Consensus 575 -~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l---L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~ 650 (2100)
..|....+|++-++...+.... ..- ....+..+..+ -.+.++..+..-..+.+++|+.-.+. -.....-++|
T Consensus 534 r~LrgktmEcisli~~AVGke~F-~~~--a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~-F~p~L~~Vmp 609 (1075)
T KOG2171|consen 534 RELRGKTMECLSLIARAVGKEKF-LPL--AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD-FAPFLPVVMP 609 (1075)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhh-hHh--HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh-hHhHHHHHhH
Confidence 3666677888876654432221 110 01114444444 22345667777777777777642211 1233344667
Q ss_pred HHHHhhcCC---------CH---------------------------HHHHHHHHHHHHHhcCCchhHHHHHHhCCChH-
Q 000133 651 SVMKLLDVG---------SE---------------------------CILVEASRCLAAIFLSVRENREVAAVARDALS- 693 (2100)
Q Consensus 651 ~Lv~lL~~~---------~~---------------------------~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~- 693 (2100)
+|.+-.+-. +. .-+..|+.+|+.++....+. .. ..-..+++
T Consensus 610 pl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~-F~-pYve~v~~l 687 (1075)
T KOG2171|consen 610 PLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEA-FA-PYVEQVVEL 687 (1075)
T ss_pred HHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhh-hh-hHHHHHHHH
Confidence 776543210 00 13566888888887654321 11 11123444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhc-------CcHHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHHHHHHHhcCccc
Q 000133 694 PLVVLAGSPVLEVAEQATCALANLIL-------DSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLHSRKID 765 (2100)
Q Consensus 694 ~Lv~ll~~~~~evr~~aa~aL~~L~~-------~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~aL~~l~~~~~~~ 765 (2100)
.+..+....+..||+.|+.++++++. +.+.....+...+.+.++..+..+... +...-..++.+.....+..
T Consensus 688 ~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~ 767 (1075)
T KOG2171|consen 688 MVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN 767 (1075)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc
Confidence 23344456888999999999999962 333344455678888888888877654 5555555555555533321
Q ss_pred ----hhHhhhhhccCcHHHHHHhhhhc----------ccccch------------HhHHHHHHHHHHcCCCCCCCCcccc
Q 000133 766 ----YTITDCVNRAGTVLALVSFLESA----------SGSVAT------------SEALDALAILSRSGGASGHVKPAWQ 819 (2100)
Q Consensus 766 ----~~~~~~~~~~g~l~~li~~l~s~----------~~~v~~------------~~al~~L~~L~~~~~~~~~~~~~~~ 819 (2100)
+.+.. ...+....+..-.+.. +..... ..+.+++..+++...+ .|..
T Consensus 768 ~L~~~~~~~--~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~-~f~p---- 840 (1075)
T KOG2171|consen 768 CLNEDGLEA--LLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKG-SFLP---- 840 (1075)
T ss_pred cCCcHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccc-cccH----
Confidence 00111 0011111111100000 111111 2233344445444433 1111
Q ss_pred eeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccch-------HHHHHHHhhcCCcceecchh
Q 000133 820 VLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCI-------SSIARRVISCTNPKVKIGGA 892 (2100)
Q Consensus 820 ~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~-------~~~~~~~l~s~~~~~r~~~~ 892 (2100)
-+.+..+-++..+..+.+.-|+-|.-++.-+ |-..|.=. ..++...++++++++|-.|+
T Consensus 841 ---~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~-----------ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAs 906 (1075)
T KOG2171|consen 841 ---FFENFLPLIVKLLKSKKTVARQWAVCIFDDL-----------IEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAA 906 (1075)
T ss_pred ---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-----------HHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1222333344455555554466666655444 33333222 23444558899999999999
Q ss_pred hHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCc
Q 000133 893 ALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGE 972 (2100)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 972 (2100)
|.++++|...... =.+.+......|+.+++....- ...+...+-.+..+++. + +..++..+.+..
T Consensus 907 YGiGvlaq~~g~~------y~~v~~~~l~~L~~~iq~~~ar-~Ee~~~ateNa~gaiak---i-----~~~~~~~i~vdq 971 (1075)
T KOG2171|consen 907 YGMGVLAQFGGED------YAPVCSEALPLLVQVLQPPLAR-TEENRRATENAIGAIAK---I-----LLFNPNRIPVDQ 971 (1075)
T ss_pred HHHHHHHHHcCcc------hHHHHHHHHHHHHHHHcChhhh-hHHHhHHHHHHHHHHHH---H-----HHhCCccCcHHH
Confidence 9999999774322 1223444555555555533311 00122233334444442 2 222232333667
Q ss_pred hhHHHHHHHHhcc
Q 000133 973 NLAIWLLCVLACH 985 (2100)
Q Consensus 973 ~~~~~l~~~~~~~ 985 (2100)
.++.|+..+.-..
T Consensus 972 vl~~~l~~LPl~~ 984 (1075)
T KOG2171|consen 972 VLPAWLSWLPLKE 984 (1075)
T ss_pred HHHHHHHhCCCcc
Confidence 7788887665433
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=184.76 Aligned_cols=378 Identities=17% Similarity=0.162 Sum_probs=279.4
Q ss_pred ChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHH
Q 000133 372 PFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLI 448 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv 448 (2100)
...+|-.|+--+..+ +++.+.+..+.+.|+|+.|+.++++...++|.+||++|+||..++.. ++-.|.+.+||+.++
T Consensus 246 ~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~ 325 (717)
T KOG1048|consen 246 DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLV 325 (717)
T ss_pred ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHH
Confidence 344788888888888 78888999999999999999999999999999999999999988776 888999999999999
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--------------CHHHHHHHHHHHHHHhc
Q 000133 449 SLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--------------SAKAKEDSASILRNLCN 513 (2100)
Q Consensus 449 ~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~vre~A~~aL~~L~~ 513 (2100)
++|+. .|.++++....+|+||++ ++..+..++. .++..|-.-+-.+ ..++-.++..+|.|++.
T Consensus 326 ~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs 403 (717)
T KOG1048|consen 326 RLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSS 403 (717)
T ss_pred HHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccc
Confidence 99996 799999999999999996 4555554443 3666666544211 14456789999999999
Q ss_pred CChhhHHHHHh-CCcHHHHHHHhhc------CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCC--cchHH--HHHH
Q 000133 514 HSEDIRACVES-ADAVPALLWLLKN------GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDL--PESKV--YVLD 582 (2100)
Q Consensus 514 ~~~~~~~~i~~-~g~i~~Lv~lL~~------~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~--~~~~~--~a~~ 582 (2100)
.+.+.|+.+.+ .|.|..|+..+++ .+.+..+.+..+|.||++.-+.+.-+.....+.... +.... ....
T Consensus 404 ~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~g 483 (717)
T KOG1048|consen 404 AGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVG 483 (717)
T ss_pred hhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccc
Confidence 88888888877 7889999998874 466788999999999998665433232222221110 00000 1112
Q ss_pred HHHHHHhc-------cCchhHHH-----HhhhccchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChh----hHHHH-H
Q 000133 583 ALKSMLSV-------VSFSDILR-----EGSAANDAVETMIKIL-SSTKEETQAKSASALAGIFETRKD----LRESS-I 644 (2100)
Q Consensus 583 aL~~l~~~-------~~~~~~~~-----~~i~~~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~----~~~~~-~ 644 (2100)
|++....- .+.++... +.......|.....+| .+.++.+.++++.+|.|++.+... ++..+ .
T Consensus 484 cf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~ 563 (717)
T KOG1048|consen 484 CFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFR 563 (717)
T ss_pred cccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhh
Confidence 22211111 00111000 0011223355555555 467899999999999999987643 34444 6
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC------CHHHHHHHHHHHHHHh
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP------VLEVAEQATCALANLI 718 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~------~~evr~~aa~aL~~L~ 718 (2100)
+..++|+|+++|+.++..+.+.++.+|+||+.+. .++. ++...+++.|+..+..+ .+++-..++.+|+|++
T Consensus 564 kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~-ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKE-LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhh-hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 7789999999999999999999999999998765 4555 45689999999999764 3678889999999999
Q ss_pred -cCcHHHHHHHHcCcHHHHHHHHccCChh-HHHHHHHH
Q 000133 719 -LDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAA 754 (2100)
Q Consensus 719 -~~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~~Aa~a 754 (2100)
.+...+..+...+.++.|+-+.++..+. .-+.|..-
T Consensus 641 ~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~v 678 (717)
T KOG1048|consen 641 RKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSV 678 (717)
T ss_pred HHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHH
Confidence 5577889999999999999999985553 33344333
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=185.63 Aligned_cols=387 Identities=17% Similarity=0.130 Sum_probs=290.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhH
Q 000133 99 PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFW 178 (2100)
Q Consensus 99 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 178 (2100)
.|+.+|...|.+- -++.|.+++. ....+.++...|-+|.|+.+|-...+.+...+..+-.+|.|+.++.++.+
T Consensus 201 sllsml~t~D~ee---~ar~fLemSs----s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEE---MARTFLEMSS----SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCCHHH---HHHHHHHhcc----CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 4555555555443 3567788887 33446778999999999999988777778888889999999998876655
Q ss_pred HHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh-hcCcchhhHHhhhchHHHHHHHhcCCCCHHHHH-HHHHHHHHhh
Q 000133 179 AATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM-EEDVSVCSRVLAADATKQLLKLLGSGNEASVRA-EAAGALKSLS 256 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~-~Aa~aL~~Ls 256 (2100)
+.-++..+++.|-+ ++.++- .++... ...+.. .... .+-+. .|..+|..++
T Consensus 274 r~RRE~kvL~lLeQ--------IraYC~-~~~~~lqar~~~~-----------------apa~-~~H~lcaA~~~lMK~S 326 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQ--------IRAYCE-TCWTWLQARGPAI-----------------APAS-DEHQLCAALCTLMKLS 326 (2195)
T ss_pred hhHHHHHHHHHHHH--------HHHHHH-HHHHHHHhcCCCC-----------------CCcc-cchhhHHHHHHHHHhh
Confidence 54444443433322 222222 221111 111100 0011 23333 6677888888
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCC---cchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPS---KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 333 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~---~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~ 333 (2100)
. +.+.|.++.+.||+.++-++++-.. +....++.+..+++++..+|.||.+|+.+.-.+|
T Consensus 327 F-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L---------------- 389 (2195)
T KOG2122|consen 327 F-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL---------------- 389 (2195)
T ss_pred c-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh----------------
Confidence 7 7899999999999999888775432 1112345678999999999999999865333332
Q ss_pred hhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC--CccchhhhccccHHHHHHh-hc
Q 000133 334 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGL-IT 410 (2100)
Q Consensus 334 ~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~~g~i~~Lv~l-L~ 410 (2100)
+...++++.+|..|.+.++++ ++-.+..|.||..+ ...++.+.+.|-+..|+.+ ++
T Consensus 390 --------------------Cs~rgfMeavVAQL~s~peeL-~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 390 --------------------CSQRGFMEAVVAQLISAPEEL-LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred --------------------hhhhhHHHHHHHHHhcChHHH-HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 223467888888888877665 55677889999644 3457888899998888764 55
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhC-CcHHHHHHhhCCC----CHHHHHHHHHHHHHhccC---CcccHHHHHh
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISLLGLS----SEQQQECSVALLCLLSNE---NDDSKWAITA 482 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~s~----~~~v~~~A~~aL~nLs~~---~~~~~~~i~~ 482 (2100)
..........+.+||||+.++.+++..|... |++..|+.+|.-. .-.+.+.+-++|.|.+.. .++.++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 6677888999999999999999999999775 5589999999743 456788888999987643 5677999999
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++.+..|+++|++.+-.+..++|.+||||...+++.+.++.+.|+++.|..++++.+..+-+.++.+|.||..+.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997754
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-13 Score=152.30 Aligned_cols=426 Identities=15% Similarity=0.108 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHhCCCccch----hhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHH
Q 000133 374 LVQERTIEALASLYGNPLLSI----KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS 449 (2100)
Q Consensus 374 ~vq~~aa~aL~~L~~~~~~~~----~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 449 (2100)
.+......|++..+.++.-|. +-..++.+.+|.+...+++.++..+++++|+|+|..+.+.|..+.+.||-..+++
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 456667778887765544333 3345677888888888889999999999999999999999999999999777777
Q ss_pred hhCC----CC---HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcC-ChhhH
Q 000133 450 LLGL----SS---EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNH-SEDIR 519 (2100)
Q Consensus 450 lL~s----~~---~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~-~~~~~ 519 (2100)
.|+. .+ .+...-+.+.|.|...++++.+..+.+.|.++.|...+.-+ +....+.......||..- ++...
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 7763 22 34444567889999888899999999999999999988655 666677777777776542 12223
Q ss_pred HHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCC-------CCCcHHHHHHHhhcC-CcchHHHHHHHHHHHHh-
Q 000133 520 ACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKS-------DTATISQLTALLTSD-LPESKVYVLDALKSMLS- 589 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~-------~~~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~- 589 (2100)
....+......+++++.+. .++..+.....|...+..+ ..+-+..+..+++.- +..-+.....-+...+.
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 4444566778888998874 5567777778888777654 235666777776652 21122222222221111
Q ss_pred ---ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-----CCCH
Q 000133 590 ---VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-----VGSE 661 (2100)
Q Consensus 590 ---~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~ 661 (2100)
+..-.+..+.....+..+..++.++.|.+...+..++-+++|+++. ++++-.+++.+.+..|+..+. +++-
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 1122333455555555788899999999999999999999999997 678888999999999999983 3556
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHH-HcCcHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAI-AEEIILPATRV 739 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v-~~~~v~~L~~l 739 (2100)
+.+.+++.+|+|+.... .++..+...|..+.++..++...|.+...-..+|.-+..+.+ .+.+.. ....++.|+.+
T Consensus 376 ~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred hhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 78999999999998765 677778999999999999999999999888888887776655 455554 56899999999
Q ss_pred HccCChh-HHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHH
Q 000133 740 LCEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAIL 804 (2100)
Q Consensus 740 l~~~~~~-~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L 804 (2100)
.++.+.. +..++-+-|.-+.++.... ++..++...|++...+.++.+.+.-.. .+|+-+|..+
T Consensus 454 sks~D~aGv~gESnRll~~lIkHs~~k-dv~~tvpksg~ik~~Vsm~t~~hi~mq-nEalVal~~~ 517 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKHSKYK-DVILTVPKSGGIKEKVSMFTKNHINMQ-NEALVALLST 517 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHhhHhh-hhHhhccccccHHHHHHHHHHhhHHHh-HHHHHHHHHH
Confidence 9999988 7888889999888886653 455567779999999999988776666 7777777655
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-09 Score=141.74 Aligned_cols=485 Identities=16% Similarity=0.155 Sum_probs=314.8
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREI 266 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i 266 (2100)
+..|+.-|.++|.+++..|-.++.++.... ...+.|..++..+.++++|..|+-.++.+..+.
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~------- 68 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTE----------PLLPALAHILATSADPQVRQLAAVLLRKLLTKH------- 68 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhccc----------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-------
Confidence 445666677788889999999996554332 268899999999888999999999999887630
Q ss_pred HhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcc
Q 000133 267 AGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346 (2100)
Q Consensus 267 ~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~ 346 (2100)
+..++ .++|..
T Consensus 69 --w~~l~-------------------~e~~~s------------------------------------------------ 79 (1075)
T KOG2171|consen 69 --WSRLS-------------------AEVQQS------------------------------------------------ 79 (1075)
T ss_pred --hhcCC-------------------HHHHHH------------------------------------------------
Confidence 11111 111111
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 347 KAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 426 (2100)
Q Consensus 347 ~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 426 (2100)
+.+.|.....+.+...||...+..++.++++.-.. .-++.++.|++..+++++..|+.|...|.+
T Consensus 80 ------------iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 80 ------------IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSS 144 (1075)
T ss_pred ------------HHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 11112222223444557788888888886552211 335667888889999999999999999999
Q ss_pred hhccCccc-hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-hcCChHHHHHhcc----CCCHHH
Q 000133 427 LCNNEGSL-WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-AAGGIPPLVQILE----SGSAKA 500 (2100)
Q Consensus 427 L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~~g~i~~Lv~lL~----~~~~~v 500 (2100)
+...-++. +..+. ...+.+.+-+.+++..++..++.++..++...+.++.... -..-+|.++..+. .++.+.
T Consensus 145 ~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~ 222 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDA 222 (1075)
T ss_pred hhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHH
Confidence 87653321 11111 2345566667777777999999999988765543322222 2235666666554 456666
Q ss_pred HHHHHHHHHHHhcCChhh-HHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCC----------CCcHHHHHH
Q 000133 501 KEDSASILRNLCNHSEDI-RACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSD----------TATISQLTA 567 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~----------~~~i~~L~~ 567 (2100)
-..+..+|..|....+.. +..+. .++.--+.+.++. ++.+|..|...|..++.... ...++.++.
T Consensus 223 a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH
Confidence 667888888888654432 22221 2344444444443 56688888888877765421 134555666
Q ss_pred HhhcCC----------------cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 568 LLTSDL----------------PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 568 lL~~~~----------------~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
++.+.. ......|.++|-.+++.-+... .-....+.+-.++.+.+..-|.+|..+|+.
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~------v~p~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ------VLPPLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh------ehHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 554321 1145567888887776544221 112236667778899999999999999999
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQA 710 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~a 710 (2100)
++.+..+.... .-..+++..+.+|++++++|+..|+.+++.++.+....-.. ....-.++.|+..+.++ ++.|+.+|
T Consensus 375 i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~~ld~~~~~rV~ahA 452 (1075)
T KOG2171|consen 375 IAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK-KHHERLPPALIALLDSTQNVRVQAHA 452 (1075)
T ss_pred HHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHHHhcccCchHHHHHH
Confidence 99998776444 33468999999999999999999999999998765432111 23345666788887764 66899999
Q ss_pred HHHHHHHhcC--cHHHHHHHHcCcHH-HHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhh
Q 000133 711 TCALANLILD--SEVSEKAIAEEIIL-PATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES 787 (2100)
Q Consensus 711 a~aL~~L~~~--~~~~~~~v~~~~v~-~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s 787 (2100)
+.||-|++.+ ++.... .-++++. .|..++.+++..++++++.++..+...... ++.. ..+-.++.|...+.+
T Consensus 453 a~al~nf~E~~~~~~l~p-YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~--~F~p--Y~d~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 453 AAALVNFSEECDKSILEP-YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE--KFIP--YFDRLMPLLKNFLQN 527 (1075)
T ss_pred HHHHHHHHHhCcHHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh--hhHh--HHHHHHHHHHHHHhC
Confidence 9999999844 333333 3455666 566666777777999999999988865443 2333 123344444455555
Q ss_pred cc
Q 000133 788 AS 789 (2100)
Q Consensus 788 ~~ 789 (2100)
.+
T Consensus 528 ~~ 529 (1075)
T KOG2171|consen 528 AD 529 (1075)
T ss_pred CC
Confidence 44
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=144.73 Aligned_cols=332 Identities=15% Similarity=0.118 Sum_probs=255.0
Q ss_pred hcCCHHHHHHhHc---cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcC
Q 000133 183 QAGGIDILVKLLT---LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~---s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls~~ 258 (2100)
..|+.+.++.++. +++..+...+..+|..+... .+.+.+..++..++++|....+ .++.......+..-+-+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4566676666554 56777777888888666543 3567888999999999976443 56777777788777777
Q ss_pred ChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhH
Q 000133 259 CKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALA 338 (2100)
Q Consensus 259 ~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~ 338 (2100)
+..+|+.+.+.+.++.+...+....+ ..+.+...++++-+..+++-.+++ .. +..
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk--------~~~VRel~~a~r~l~~dDDiRV~f--------------g~---ah~ 232 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGK--------TRTVRELYDAIRALLTDDDIRVVF--------------GQ---AHG 232 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCc--------cHHHHHHHHHHHHhcCCCceeeec--------------ch---hhH
Confidence 88999999999999999988866542 357778888888877765433332 11 111
Q ss_pred HHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHH
Q 000133 339 SALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQ 417 (2100)
Q Consensus 339 ~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~ 417 (2100)
+.-++.+ .++...|+..++.+-+..+-.....+|..|+-+.+.++.+.+.|++..|++++.+ ++...+
T Consensus 233 hAr~ia~-----------e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 233 HARTIAK-----------EGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred HHHHHHH-----------hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHH
Confidence 2222211 2455666666665544445667788899999999999999999999999999986 444444
Q ss_pred ---HHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC--CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHh
Q 000133 418 ---EELVRALLKLCNNEGSLWRALQGREGIQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 492 (2100)
Q Consensus 418 ---~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~l 492 (2100)
+.++..|+.|+.+ ++.+..|++.||.+.++.++. +.+|.+.++++.+++.|+-..|++...+++.|+-...++.
T Consensus 302 ~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqA 380 (461)
T KOG4199|consen 302 TLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQA 380 (461)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHH
Confidence 4667777777766 678899999999999999775 4578888999999999999999999999999999999999
Q ss_pred ccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 493 LESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 493 L~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++.. ...+|.++||.+.|+..++.+++..+.. .+++.|+..-+..++.....+-.+|..|..+
T Consensus 381 mkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 381 MKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9865 5788999999999999988888877665 4578888888888888888888888888654
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-12 Score=148.13 Aligned_cols=448 Identities=14% Similarity=0.054 Sum_probs=311.0
Q ss_pred hcCCHHHHHHHHHHHHhhhccchhhHHHHhc----CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhcc
Q 000133 64 RSGSLAVKIQAATVLGSLCKENELRVKVLLG----GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE 139 (2100)
Q Consensus 64 ~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~----g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~ 139 (2100)
...+..++...+.+++..++++..|..++.. +.+.+|.....|++.++...+.+||+|+++. ++.+|..+.+.
T Consensus 52 ~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd---n~E~R~a~~~l 128 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYD---NNENRAAFFNL 128 (604)
T ss_pred eeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhcc---CchhHHHHHhc
Confidence 3445678888999999999998888877655 5567777777889999999999999999993 55678999999
Q ss_pred CChHHHHHHhhccCCCcc----hHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHh
Q 000133 140 GVVPVLWEQLKNGLKSGN----VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMM 213 (2100)
Q Consensus 140 g~vp~L~~lL~~~~~~~~----~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~ 213 (2100)
|+-..+++.|++....|. ..-....+.|.|...+.++.+.+..+.|.++.|...+.-+ +.+..+.......++.
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nll 208 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLL 208 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHH
Confidence 998888899887644433 2333456778898889999999999999999999988654 3344444433333444
Q ss_pred hcCcch-hhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhh
Q 000133 214 EEDVSV-CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYA 292 (2100)
Q Consensus 214 ~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~ 292 (2100)
+-...+ .+...+....-.+++++.+....+.+..+..+|...+. ++..+-.+++.|-+..++.+++.-. .+......
T Consensus 209 s~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k-~~t~k~d~ 286 (604)
T KOG4500|consen 209 SFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMK-DFTKKTDM 286 (604)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcc-cccchHHH
Confidence 222212 22334556667778888765556788899999999987 7788888999999999999886521 11100111
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCC
Q 000133 293 QALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP 372 (2100)
Q Consensus 293 ~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~ 372 (2100)
-.+...++.-..-+..|+ .+.+..|...++...+..++.+.+.
T Consensus 287 ~~l~k~~~el~vllltGD-------------------------------------eSMq~L~~~p~~l~~~~sw~~S~d~ 329 (604)
T KOG4500|consen 287 LNLFKRIAELDVLLLTGD-------------------------------------ESMQKLHADPQFLDFLESWFRSDDS 329 (604)
T ss_pred HHHHHhhhhHhhhhhcCc-------------------------------------hHHHHHhcCcHHHHHHHHHhcCCch
Confidence 111111111111111111 1111122233577888889988877
Q ss_pred hHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-----CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 373 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-----MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 373 ~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
.. +..+.-+++++++++.++..+.+.+.+..|++++. +++.++|.+++.+|+|+.-. ..++..+..+|..+.+
T Consensus 330 ~l-~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 330 NL-ITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAI 407 (604)
T ss_pred hH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHH
Confidence 64 77788899999999999999999999999999885 35778999999999999988 4567788889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-hcCChHHHHHhccCCCHH-HHHHHHHHHHHHhcCC--hhhHHHHH
Q 000133 448 ISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-AAGGIPPLVQILESGSAK-AKEDSASILRNLCNHS--EDIRACVE 523 (2100)
Q Consensus 448 v~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~-vre~A~~aL~~L~~~~--~~~~~~i~ 523 (2100)
+..++...+.++..-.+.|+-+....+.....+. .-.-+..|+..-++++-. +--..-+.+.-+..|+ .+.-..+.
T Consensus 408 L~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp 487 (604)
T KOG4500|consen 408 LLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP 487 (604)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence 9999999999988877777766532221111221 112456667766666433 4444555566665552 23334455
Q ss_pred hCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 524 ~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+.|+++.+|..+....-..+..|..+|..+..
T Consensus 488 ksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 488 KSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred ccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 68888888888887777777777777766543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-08 Score=122.93 Aligned_cols=771 Identities=15% Similarity=0.123 Sum_probs=408.2
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhh-ccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLC-KENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+..++++|.+.+.+|+..|.++++-+. |-++.+.+ ..+..|..-+-++....|-.+..+|...-.. .+..
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P~-- 119 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPPS-- 119 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCCc--
Confidence 46789999999999999999999999887 22222221 1233444444455556666666666644431 1111
Q ss_pred ccchhccCChHHHHHHhhccCCCcch---HHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNV---VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~---v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
...+....+.+.+...+......... ++-.++..+..+-+...+.-.. .+.+.+..++.-+.++...++..|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 22245566677777776654322222 3333333333332211111010 2334455666666778888999999999
Q ss_pred HHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHh--CCChHHHHHhhcCCCcchh
Q 000133 210 ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAG--SNGIPAMINATIAPSKEFM 287 (2100)
Q Consensus 210 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~e~~ 287 (2100)
+.++..-+ ...-.+.+..|++-|.........+.-..+|..++.. ....+.. ...+|.+.......
T Consensus 199 ~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~---ag~r~~~h~~~ivp~v~~y~~~~----- 266 (1233)
T KOG1824|consen 199 GHLASSCN----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ---AGHRFGSHLDKIVPLVADYCNKI----- 266 (1233)
T ss_pred HHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH---hcchhhcccchhhHHHHHHhccc-----
Confidence 99986443 2333456777777777665555555666677776652 1112211 23466666666332
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhc---ccc----CCCC--CCCchh
Q 000133 288 QGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD---SKA----ESTK--PSDPLI 358 (2100)
Q Consensus 288 ~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~---~~~----~~~~--~~~~~~ 358 (2100)
...+.+++|++..++.-+-... |+...|.... .+...+..+. ... ++.. ..+...
T Consensus 267 -e~~dDELrE~~lQale~fl~rc-------------p~ei~p~~pe--i~~l~l~yisYDPNy~yd~~eDed~~~~ed~e 330 (1233)
T KOG1824|consen 267 -EEDDDELREYCLQALESFLRRC-------------PKEILPHVPE--IINLCLSYISYDPNYNYDTEEDEDAMFLEDEE 330 (1233)
T ss_pred -ccCcHHHHHHHHHHHHHHHHhC-------------hhhhcccchH--HHHHHHHHhccCCCCCCCCccchhhhhhhccc
Confidence 1234678888888876543311 1111111100 0111111111 000 0000 000000
Q ss_pred hHHHHHhhcC--CCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccch
Q 000133 359 VEQTLVNQFK--PRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLW 435 (2100)
Q Consensus 359 i~~~Lv~lL~--~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~ 435 (2100)
-.+. -.-.. ..-++.||+.|+.|+..+ .+..+.-..+.+. .-|.++.-++...+.|+.....+...+-..-+...
T Consensus 331 Dde~-~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~-l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 331 DDEQ-DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQT-LGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred cchh-ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 0000 00011 112467999999999988 5554443332221 23455666665555555554444444332211110
Q ss_pred H------HHHhCCc---------------HHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 436 R------ALQGREG---------------IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 436 ~------~i~~~g~---------------i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
. .+. .|| ++.+-+.+++.+...+..+...|..+....++. -.-..-..+|.++.-|.
T Consensus 409 ~~~~d~d~~e-~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~-l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 409 EVLADNDAME-QGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGA-LAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred ccccCchhhh-ccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcch-hhhcccccchhhhhhcC
Confidence 0 111 121 233333445555555555666666665433322 11112235777888887
Q ss_pred CC--CHHHHHHHHHHHHHHh-cCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC---C-------CCc
Q 000133 495 SG--SAKAKEDSASILRNLC-NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS---D-------TAT 561 (2100)
Q Consensus 495 ~~--~~~vre~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~---~-------~~~ 561 (2100)
+. +...+..+...|.++- .++++. -.-...-..|+++....++-+++-..|..+...++..- . +.-
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~-fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEV-FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhh-cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 65 4556666666665544 333321 10011234566666667777777777777776666411 1 111
Q ss_pred HHH----HHHHhh--cCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH-Hh-cCCCHHHHHHHHHHHHHHh
Q 000133 562 ISQ----LTALLT--SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-IL-SSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 562 i~~----L~~lL~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL-~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+.+ .+..|+ +.+.++|+.|+.|+|.+..... |..+.. +|.... ++ +-+++.+|-.|+.|+..++
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D~l~~e------L~~~L~il~eRl~nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--DFLGNE------LPRTLPILLERLGNEITRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hhhhhh------hHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 222 223333 5677899999999998765433 211111 333333 22 3367889999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
...-+.--......+++.|...++......+.....++-.|..+..+.-..... .-.+..+-.++..++-.+-+.|...
T Consensus 638 ~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~ 716 (1233)
T KOG1824|consen 638 MSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAF 716 (1233)
T ss_pred hccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 875443323444567888888886655555666666666664432221111011 1234444456666777788899999
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhH-HHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccccc
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEGTISG-KTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV 792 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~-~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v 792 (2100)
|..++...+...-.+.+.+++.++++++++.-.. ...+..-+...+...... +..+..++..+.....+.
T Consensus 717 L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~---------~l~y~~l~s~lt~PV~~~ 787 (1233)
T KOG1824|consen 717 LTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEP---------DLDYISLLSLLTAPVYEQ 787 (1233)
T ss_pred HHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCC---------CccHHHHHHHHcCCcccc
Confidence 9999888887777788999999999999987553 334444444333322222 223667777777765222
Q ss_pred c----hHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccC--ChhHHHHHHHHHHHHhcCCcccchhccc
Q 000133 793 A----TSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA--TPLLQDKAIEILSRLCRDQPAVLGDEVT 866 (2100)
Q Consensus 793 ~----~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~g~~~~ 866 (2100)
+ ..+|+..++.-...--. .-+-..+.....|+.-+... +..++..|.=.|.++ ||-+-
T Consensus 788 ~~~~l~kqa~~siA~cvA~Lt~--------~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl--------gr~~~ 851 (1233)
T KOG1824|consen 788 VTDGLHKQAYYSIAKCVAALTC--------ACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL--------GRRKD 851 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHH--------hccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh--------ccCCC
Confidence 2 14555555532110000 00011122334444445533 455666666666666 44222
Q ss_pred cc-ccchHHHHHHHhhcCCcceecchhhHHHHHh
Q 000133 867 GA-SGCISSIARRVISCTNPKVKIGGAALLICAA 899 (2100)
Q Consensus 867 ~~-~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~ 899 (2100)
-. ..-....+...++|+.+++|..|+++++-++
T Consensus 852 ~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 852 LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLA 885 (1233)
T ss_pred CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhh
Confidence 11 1223346666789999999999999988887
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-13 Score=156.79 Aligned_cols=252 Identities=19% Similarity=0.105 Sum_probs=206.8
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
-.++.|+.+|.+++..++..++++|..+.. +. .++.+..++.++++.+|..++++|+.|... +..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~---------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--QD---------VFRLAIELCSSKNPIERDIGADILSQLGMA-KRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--ch---------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc---
Confidence 457889999999999999999999998863 22 678889999999999999999999999753 111
Q ss_pred HHhCCcHHHHHHH-hhcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHH
Q 000133 522 VESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 597 (2100)
Q Consensus 522 i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 597 (2100)
....++.|..+ +++.++.++..|+.+|++++.... +..++.+...+.++++.+|..+..+|+.+
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 12356888877 677889999999999999965332 34567777888899999999999999832
Q ss_pred HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000133 598 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 598 ~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~ 677 (2100)
.+..+++.|+.+|+++++.+|..|+.+|+++...++ .+++.|+.++.+.+..++..|+.+|+.+-
T Consensus 156 ----~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 156 ----NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred ----CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccC--
Confidence 234569999999999999999999999999954333 46888999999999999999999999862
Q ss_pred CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHc-cCChhHHHHHHHHHH
Q 000133 678 VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLC-EGTISGKTLAAAAIA 756 (2100)
Q Consensus 678 ~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~-~~~~~~~~~Aa~aL~ 756 (2100)
...+++.|++.+.+++ ++..++.||+++-. +..++.|.++++ .++..++..|.++|.
T Consensus 221 ----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 1358999999999876 67889999998764 468999999997 666669999998886
Q ss_pred H
Q 000133 757 R 757 (2100)
Q Consensus 757 ~ 757 (2100)
+
T Consensus 279 ~ 279 (280)
T PRK09687 279 R 279 (280)
T ss_pred c
Confidence 4
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=152.50 Aligned_cols=253 Identities=19% Similarity=0.119 Sum_probs=204.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
.++.|+.+|.+.+..+|..++.+|..+... ..++.+..+++++++.+|..++++|+.|.. ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGM-AKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cccc----
Confidence 356788899999999999999999876532 567888899999999999999999999973 2111
Q ss_pred HhcCChHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 481 TAAGGIPPLVQI-LESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 481 ~~~g~i~~Lv~l-L~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
....++.|..+ ++++++.+|..|+.+|++++...... ...+++.+...+.+.++.++..++.+|+++. ++
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---~~ 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---DE 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---CH
Confidence 12357788877 67889999999999999997532111 1224566778888889999999999998763 46
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
.+++.|+.+|.+.++.+|..|..+||.+.. ....+++.|+.+|.+.++.+|..|+++|+++...
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~---- 222 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNKY------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK---- 222 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh----
Confidence 799999999999999999999999996511 1234588999999999999999999999986532
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHHH
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALA 715 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~ 715 (2100)
.++|+|++.+.+++ ++..++.+|+.+.. ..++|.|.+++. ++++.++..+.++|.
T Consensus 223 -------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 223 -------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 57999999999877 57789999998832 258999999996 889999999988875
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=156.54 Aligned_cols=383 Identities=15% Similarity=0.096 Sum_probs=271.9
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
++..+..-+. ++++.+|+....|+..+....+.. ......+.+.+++...+..-+..+...++.+..+.. ...+
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 4444444443 445678999999998773221111 112235567888888889999999999999998754 3455
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHH-HHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 000133 439 QGREGIQLLISLLGLSSEQQQEC-SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~-A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~ 517 (2100)
.+.+.+..|-..+++.+...+++ +..+.-... .+-..-.+.+-...+|.++.-+.+..+.+|+.|..+...+...-+.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~-~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ-GNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH-HhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 66778888888888876655554 221111111 1111112222223455566666677889998887777666543222
Q ss_pred hHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 518 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------TATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..- .-.+|+++.-+.+..|+.+..+...|+.|+...+ +..+|.+.+.|.+.++++|..+.+|+-.++.+
T Consensus 250 ~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 250 YAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred chh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 110 1245677766666699999999999999988663 47899999999999999999999999999999
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
..+++ ++.. +|.|++.+.+++..+.+ +...|..-... +..+....+-.+|.|.+.+..++..+.++++.+
T Consensus 326 idN~d-I~~~------ip~Lld~l~dp~~~~~e-~~~~L~~ttFV--~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 326 IDNPD-IQKI------IPTLLDALADPSCYTPE-CLDSLGATTFV--AEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred hccHH-HHHH------HHHHHHHhcCcccchHH-HHHhhcceeee--eeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 98888 4433 89999999888755543 23333332222 234445556689999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh-HHH
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKT 749 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~-~~~ 749 (2100)
+.|++.-.++.+...-.-...+|.|-..+.++.||+|..++.||+.+..+-..... ++.+|.+.+.++++... .+.
T Consensus 396 idNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~ 472 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRS 472 (569)
T ss_pred HHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhH
Confidence 99999887777777555555666666777788999999999999988744222211 78999999999999887 588
Q ss_pred HHHHHHHHHHhcCccc
Q 000133 750 LAAAAIARLLHSRKID 765 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~ 765 (2100)
++++.|.++++.....
T Consensus 473 g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 473 GAAQDLSEVLAGLGVE 488 (569)
T ss_pred HHhhhHHHHHhcccch
Confidence 9999999999877764
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-10 Score=137.62 Aligned_cols=493 Identities=11% Similarity=0.060 Sum_probs=309.3
Q ss_pred HccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCChHhHHHHHhCCCh
Q 000133 194 LTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARREIAGSNGI 272 (2100)
Q Consensus 194 L~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i 272 (2100)
+-+.+++....+..-..+++.++.+....+++.|+++.|+.+++..++ .+.+...+.++..+..+.......+.+.+-+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 345566666667777778888888888889999999999999987554 5677788888888888777788889999999
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCC
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTK 352 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~ 352 (2100)
+.|+.++..++ ...+.+...++++++-.-.++. ...+.
T Consensus 98 l~Ll~LLs~sD--------~~~~le~~l~~lR~Ifet~~~q-------------~~~~s--------------------- 135 (678)
T KOG1293|consen 98 LKLLQLLSESD--------SLNVLEKTLRCLRTIFETSKYQ-------------DKKMS--------------------- 135 (678)
T ss_pred HHHHHHhcCcc--------hHhHHHHHHHHHHHHHhccccc-------------ccchh---------------------
Confidence 99999998764 2567788888888776532110 00000
Q ss_pred CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHH---Hhhc
Q 000133 353 PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL---KLCN 429 (2100)
Q Consensus 353 ~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~---~L~~ 429 (2100)
.....+++.+..++..... .+.+.-+.-.+.+.+.++.+..+.+.|..+.+.-++..-+...|..|..+++ ++..
T Consensus 136 -~~~~sIi~~~s~l~s~~lk-~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~ 213 (678)
T KOG1293|consen 136 -LHLKSIIVKFSLLYSIELK-YISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILR 213 (678)
T ss_pred -hhHHHHHHHHHHHHhhhhh-hhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeee
Confidence 1112333334333331211 1112112222223444556667778888888877777778899999999999 7777
Q ss_pred cCccchHH----HHhCCcHH--HHHHhhCCCCHHHHHHHHHHHHHhccCCcc----cHHHHHhcCChHHH-----HHhcc
Q 000133 430 NEGSLWRA----LQGREGIQ--LLISLLGLSSEQQQECSVALLCLLSNENDD----SKWAITAAGGIPPL-----VQILE 494 (2100)
Q Consensus 430 ~~~~~~~~----i~~~g~i~--~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~----~~~~i~~~g~i~~L-----v~lL~ 494 (2100)
+++..... +.+.|..+ .+-+++++++...+..++.++.++...+-+ .++.+.-..|=..+ +.++.
T Consensus 214 Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~ 293 (678)
T KOG1293|consen 214 NNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN 293 (678)
T ss_pred cCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec
Confidence 76654332 23344444 455678888888888888888887654311 12222222221112 22223
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCc
Q 000133 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP 574 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~ 574 (2100)
++-...-..++...+.++..-...+....+...++.+++++..+.. .++. .+
T Consensus 294 ~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~s----l~a~------------------------~~ 345 (678)
T KOG1293|consen 294 DPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICAS----LAAS------------------------DE 345 (678)
T ss_pred CCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHH----Hhhc------------------------ch
Confidence 3322222233444444443223344444456667777777654211 0000 00
Q ss_pred chHHHHHHH---HHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHH
Q 000133 575 ESKVYVLDA---LKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWS 651 (2100)
Q Consensus 575 ~~~~~a~~a---L~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~ 651 (2100)
+.+.-++.- +..++..... + .+..+-.......+-......+.....+|+.++.++++.-...+..+....+..+
T Consensus 346 ~~~~i~l~e~~i~~~~~~~~~i-~-~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~p 423 (678)
T KOG1293|consen 346 KYRLILLNETLILNHLEYGLEI-S-LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQP 423 (678)
T ss_pred hhhHHHhhhhhhhhhhhhhcch-h-HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHH
Confidence 110000000 0000000000 0 1111111101112222334567788888999999988876656666677789999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--HHHHHHHH
Q 000133 652 VMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS--EVSEKAIA 729 (2100)
Q Consensus 652 Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~--~~~~~~v~ 729 (2100)
|+.++.+++..++..+.++|+|++...+ ..+..+++.|+++.|.+++.++++.+|..+.|+|.+++.+. ....+...
T Consensus 424 lvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ 502 (678)
T KOG1293|consen 424 LVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA 502 (678)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999999999999988765 56667999999999999999999999999999999999553 34444444
Q ss_pred cCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 730 EEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 730 ~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.--...+..+..+++..+++++.+-|.|+...
T Consensus 503 ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 503 KIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 44455666777788888999999999998854
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=170.13 Aligned_cols=278 Identities=19% Similarity=0.145 Sum_probs=223.9
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhH
Q 000133 1229 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1308 (2100)
Q Consensus 1229 ~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~ 1308 (2100)
....++.|+..|.+++...|..|+.+|..+ +.+.+++.|+.+|++.+..++..|+.+|.++...
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~----------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTET----------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhh----------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 345788999999999999999999999875 3566899999999999999999999999988621
Q ss_pred HHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhccc
Q 000133 1309 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1388 (2100)
Q Consensus 1309 ~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 1388 (2100)
....+.|...|.+ ++..++..+...|..+.. +....|+..|.++++.+|..|+.+|..+.
T Consensus 683 ------~~~~~~L~~~L~~-~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 683 ------LPPAPALRDHLGS-PDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred ------cCchHHHHHHhcC-CCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 1234567777776 578999999998887631 12346788999999999999999998863
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000133 1389 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1468 (2100)
Q Consensus 1389 ~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~L 1468 (2100)
..+.|..++.++++.||..+..+|+.+....+ ..++.+..++.+++..+|..++..|..+
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23557888999999999999999999987641 1378889999999999999888776444
Q ss_pred HhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHH
Q 000133 1469 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1548 (2100)
Q Consensus 1469 s~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~ 1548 (2100)
.... .....++..+.+++ +.++..|.++|..+ .....+++|+.+|++++..||..++
T Consensus 803 g~~~---------~~~~~l~~aL~d~d--~~VR~~Aa~aL~~l------------~~~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 803 GCPP---------DDVAAATAALRASA--WQVRQGAARALAGA------------AADVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred CCcc---------hhHHHHHHHhcCCC--hHHHHHHHHHHHhc------------cccchHHHHHHHhcCCCHHHHHHHH
Confidence 3221 12366788888766 88999999999874 4566789999999999999999999
Q ss_pred HHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHH
Q 000133 1549 ELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVS 1594 (2100)
Q Consensus 1549 ~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~ 1594 (2100)
.+|+++..+ ..+.+.|...+++.+.+||..|.+||..
T Consensus 860 ~aL~~~~~~---------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRWPGD---------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhccCCC---------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999997332 2457889999999999999999999963
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=168.68 Aligned_cols=276 Identities=17% Similarity=0.104 Sum_probs=224.7
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
...++.|+..|.++++.+|+.|+..|..+.. .+.++.|+.+|+++++.++..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 3456788999999999999999999988643 2578999999999999999999999998853111
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
..+.|...|.++++.+|..|+.+|..+... -...|+..|++.++.++..|+.+|..+-
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 236788889999999999999999887532 2346788899999999999999998762
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
..+.|..++.++++++|..+..+|+.+... ...+++.|..+++++++.+|..|+.+|.++... +
T Consensus 743 --~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~- 806 (897)
T PRK13800 743 --DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP-P- 806 (897)
T ss_pred --CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c-
Confidence 245688889999999999999999855321 123478899999999999999999999998653 1
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
..++.+...|.+++..++..|+.+|+.+.. ...++.|+.++.++++.||..|+.+|..+-
T Consensus 807 --------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 --------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred --------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 124668888999999999999999988721 356799999999999999999999999862
Q ss_pred cCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHH
Q 000133 719 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIA 756 (2100)
Q Consensus 719 ~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~ 756 (2100)
. + +...+.|...+++++..+|..|+++|.
T Consensus 867 ~-~--------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G-D--------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C-C--------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2 1 245778889999999999999999985
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-09 Score=139.49 Aligned_cols=368 Identities=16% Similarity=0.140 Sum_probs=272.6
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCC
Q 000133 363 LVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRE 442 (2100)
Q Consensus 363 Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 442 (2100)
+...|...+.+.+ ..++..|..+......... ..+..+.|...|.++++.+|..+++.|.++..++....+.+.+.+
T Consensus 43 lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 5555555544443 4455666666443322222 345677889999999999999999999999988777677778889
Q ss_pred cHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 443 GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 443 ~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
.++.++.++.+++..+...|..+|.+++. ++.....+...+.++.|.+++...++.+|-++..++.+++..+++....+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999996 66777778899999999999998889999999999999999999999999
Q ss_pred HhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-------CCCcHHHHHHHhhcCCcchHHH------HHHHHHHHHh
Q 000133 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-------DTATISQLTALLTSDLPESKVY------VLDALKSMLS 589 (2100)
Q Consensus 523 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-------~~~~i~~L~~lL~~~~~~~~~~------a~~aL~~l~~ 589 (2100)
.+.|.++.++..+++.+.-++..+..+|..|+... ..+.++.|..++.+...+.+.. .....|+++.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 99999999999999988889999999999999854 2478899999987654333111 2244444544
Q ss_pred ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH-Hhc-CchHHHHH----hhcCCCHHH
Q 000133 590 VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS-IAV-KTLWSVMK----LLDVGSECI 663 (2100)
Q Consensus 590 ~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~-~~~-g~v~~Lv~----lL~~~~~~v 663 (2100)
. ....... .. ...+..+.+++.+.++..+..|..+++.++.. .+....+ ... +.++..++ ...+...++
T Consensus 279 ~-~~~~v~~-~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 279 V-SPQEVLE-LY--PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred c-ChHHHHH-HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4 2222111 11 12244455566788999999999999999976 4544444 332 34444444 446677789
Q ss_pred HHHHHHHHHHHhcCCch--hHHHH--------HHhCCChH-HHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHH-HcC
Q 000133 664 LVEASRCLAAIFLSVRE--NREVA--------AVARDALS-PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAI-AEE 731 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~--~~~~~--------~~~~~~l~-~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v-~~~ 731 (2100)
+..+..++.++....++ .++.. ....+... .++.+++.|=+|+|..+...|..|+..+-....+. .+|
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~g 433 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPG 433 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCcc
Confidence 99999999999654443 22221 22334444 77899999999999999999999998877666665 456
Q ss_pred cHHHHHHH
Q 000133 732 IILPATRV 739 (2100)
Q Consensus 732 ~v~~L~~l 739 (2100)
.++.|+.-
T Consensus 434 fie~lldr 441 (503)
T PF10508_consen 434 FIEYLLDR 441 (503)
T ss_pred HHhhhcCC
Confidence 66665543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=146.44 Aligned_cols=495 Identities=16% Similarity=0.161 Sum_probs=340.4
Q ss_pred CChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHH
Q 000133 23 SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG 102 (2100)
Q Consensus 23 ~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 102 (2100)
.+..+|.+++..|..+.-.+... ..+.+.++.++.+.+...|.-+=-++..+...++.-..+ ++..+.+
T Consensus 18 ~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~k 86 (526)
T PF01602_consen 18 IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQK 86 (526)
T ss_dssp THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHH
Confidence 45678888999999887766533 246788899999999999888877788777555441111 5778888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHH
Q 000133 103 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 182 (2100)
Q Consensus 103 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~ 182 (2100)
-|.++++..|..|+.+|.++.. .. + -.-++|.+..++.+ ..+.|+..|+.++..+....++. +.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~----~~-----~-~~~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~p~~---~~ 150 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRT----PE-----M-AEPLIPDVIKLLSD---PSPYVRKKAALALLKIYRKDPDL---VE 150 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-S----HH-----H-HHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred hhcCCCHHHHHHHHhhhhhhcc----cc-----h-hhHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccCHHH---HH
Confidence 9999999999999999999886 22 1 23357777777775 45679999999999987554433 22
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
.. .++.+.+++.++++.++..|+.++..+ ...++... -.-...+..|.+++... ++-.+......|..++...+..
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhh
Confidence 22 689999999999999999999999777 22221111 12233455555555554 4678999999999998766554
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
... ...++.+..++.+. ...++..++.++.++..... .
T Consensus 227 ~~~---~~~i~~l~~~l~s~---------~~~V~~e~~~~i~~l~~~~~------------------~------------ 264 (526)
T PF01602_consen 227 ADK---NRIIEPLLNLLQSS---------SPSVVYEAIRLIIKLSPSPE------------------L------------ 264 (526)
T ss_dssp HHH---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHSSSHH------------------H------------
T ss_pred hhH---HHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhcchH------------------H------------
Confidence 411 23466777777532 36777888888776553210 0
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELV 421 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~ 421 (2100)
...+.+.|.+++. .++..+|..+..+|..+.... ...+. .....+..+. +++..++..++
T Consensus 265 -------------~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 265 -------------LQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp -------------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHH
T ss_pred -------------HHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHH
Confidence 0135566778887 445557999999999884432 22222 1222233444 88999999999
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhh-CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
..|..++.. .+.. ..++.|...+ ..++++++..++..++.++...+..... .+..+++++..++..+
T Consensus 326 ~lL~~l~~~--~n~~-----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~ 393 (526)
T PF01602_consen 326 DLLYKLANE--SNVK-----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYV 393 (526)
T ss_dssp HHHHHH--H--HHHH-----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGC
T ss_pred HHHhhcccc--cchh-----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccc
Confidence 999999975 2222 2567788888 5558889999999999998655444333 3578999999887788
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-----CcHHHHHHHhhcCCc
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLP 574 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~-----~~i~~L~~lL~~~~~ 574 (2100)
...+...+.++....++.+.. .+..|++.+.+ .++..+..++|.++..+...+. ..+..+.......++
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP 468 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH
T ss_pred cchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH
Confidence 888888899988766666654 47888988887 6778999999999988765443 334445555666777
Q ss_pred chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000133 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS--STKEETQAKSASALAGI 632 (2100)
Q Consensus 575 ~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~--s~~~~~~~~Aa~aL~~L 632 (2100)
++|.....++..+....+..+. +.. .++.+..+.. +.++++|..|...+.=+
T Consensus 469 ~vk~~ilt~~~Kl~~~~~~~~~-~~~-----i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 469 EVKLQILTALAKLFKRNPENEV-QNE-----ILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTH-HHH-----HHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCchhh-HHH-----HHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 8999999999888776554331 112 2556666777 78999999999876544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-08 Score=132.67 Aligned_cols=390 Identities=15% Similarity=0.154 Sum_probs=276.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccch
Q 000133 57 PVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIF 136 (2100)
Q Consensus 57 ~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~ 136 (2100)
+.+...|++.+.+.-..++.+|..+-...... ....+..+.|...|.++++.+|..++.+|.++... .......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPD--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH---SEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CHHHHHHh
Confidence 34778888887776677777787766433222 22456789999999999999999999999998862 22224557
Q ss_pred hccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcC
Q 000133 137 STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED 216 (2100)
Q Consensus 137 ~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~ 216 (2100)
.+.++++.++..+.. .+..+...|..+|.+++....+. ..+++.+.++.|..++..+++.+|..+..++.+++..+
T Consensus 116 ~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 116 VDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred cCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 789999999999976 44558889999999999766544 55888888999999999989999999999999999888
Q ss_pred cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHH
Q 000133 217 VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQ 296 (2100)
Q Consensus 217 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~ 296 (2100)
+.....+.+.|.++.+++.+.+ +|.=++.+|+.+|..|+. .+++.+.+.+.|.++.|...+.....+. + . ..+.
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~--~-~~~~ 265 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R--L-SSLL 265 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c--c-cchh
Confidence 8888888999999999999998 777899999999999999 7889999999999999999997653110 0 0 0000
Q ss_pred HHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHH
Q 000133 297 ENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQ 376 (2100)
Q Consensus 297 ~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq 376 (2100)
- .|.+
T Consensus 266 l------------------------------------~g~~--------------------------------------- 270 (503)
T PF10508_consen 266 L------------------------------------PGRM--------------------------------------- 270 (503)
T ss_pred h------------------------------------hhHH---------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHhCC-C-ccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH-HhCC-cH----HHHH
Q 000133 377 ERTIEALASLYGN-P-LLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL-QGRE-GI----QLLI 448 (2100)
Q Consensus 377 ~~aa~aL~~L~~~-~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i-~~~g-~i----~~Lv 448 (2100)
...++++.. | ..... -+..+..+..++.+.|+..+..|..+++.++..... +..+ ...+ .+ ...-
T Consensus 271 ----~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G-~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 271 ----KFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred ----HHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH-HHHHHhhcchHHHHHHHHHH
Confidence 011111110 0 00000 012344567788899999999999999999977544 4444 3333 33 4444
Q ss_pred HhhCCCCHHHHHHHHHHHHHhccCCcc-c----------HHHHHhcCChH-HHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 000133 449 SLLGLSSEQQQECSVALLCLLSNENDD-S----------KWAITAAGGIP-PLVQILESGSAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 449 ~lL~s~~~~v~~~A~~aL~nLs~~~~~-~----------~~~i~~~g~i~-~Lv~lL~~~~~~vre~A~~aL~~L~~~~~ 516 (2100)
...++...+++..+..+|.++.....+ . +......+... .++.+++.+=+++|..+...|..|+.+..
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 455667889999999999999322222 1 11222333344 66777877779999999999999999855
Q ss_pred hhHHHHHhCCcHHHHHHHhhcCChhHH
Q 000133 517 DIRACVESADAVPALLWLLKNGSANGK 543 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 543 (2100)
..+..+...|.++.|++--...+...+
T Consensus 424 g~~~i~~~~gfie~lldr~~E~~K~~k 450 (503)
T PF10508_consen 424 GQREICSSPGFIEYLLDRSTETTKEGK 450 (503)
T ss_pred HHHHHHhCccHHhhhcCCCCCCCHHHH
Confidence 556555556666666554333343333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-07 Score=114.20 Aligned_cols=766 Identities=13% Similarity=0.073 Sum_probs=397.7
Q ss_pred CCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHh-hh-ccchhhHHHHhc-CC
Q 000133 22 SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGS-LC-KENELRVKVLLG-GC 96 (2100)
Q Consensus 22 ~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~-L~-~~~~~~~~i~~~-g~ 96 (2100)
|.+..++..|-..|..++...= .+.+..|...|.+. +...|+-|.-.|.+ |+ ++++.+....+. -.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf---------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNF---------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccH---------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 4455666777777776664211 12334445555543 33555555556655 44 344333322211 01
Q ss_pred h---------HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc-CCCcc-hHHHHHHH
Q 000133 97 I---------PPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG-LKSGN-VVDNLLTG 165 (2100)
Q Consensus 97 i---------~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~-~~~~~-~v~~~a~~ 165 (2100)
+ .-+++-|.+..+.....|+.++..++.-. ...+.-|.|+..|.+. ....+ .+++..+.
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~E----------lP~n~wp~li~~lv~nv~~~~~~~~k~~sle 152 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIE----------LPQNQWPELIVTLVSNVGEEQASMVKESSLE 152 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhh----------CchhhCHHHHHHHHHhcccccchHHHHHHHH
Confidence 1 12344455566666667777777777622 2345567777777553 22222 37888999
Q ss_pred HHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhch-HHHHHHHhcCCCCH
Q 000133 166 ALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADA-TKQLLKLLGSGNEA 242 (2100)
Q Consensus 166 aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~ 242 (2100)
+|+.+|.+-+.....--...++..++.-++. ++..+|-.|..+|.+-......+...=.+.+. +...++. ..++|.
T Consensus 153 alGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEa-tq~~d~ 231 (859)
T KOG1241|consen 153 ALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEA-TQSPDE 231 (859)
T ss_pred HHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeec-ccCCcH
Confidence 9999997654331111233556666666554 56788999999986543221111111111111 2222332 344678
Q ss_pred HHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccc
Q 000133 243 SVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSL 321 (2100)
Q Consensus 243 ~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~ 321 (2100)
+++..|..+|-.+.+-.-+. ...+.+ .-.+.-+..+.+.+ .++.-.+..-=.++|...-.+....++..
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~~---------deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSDN---------DEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999998876521111 111111 11122233343332 33333333333344431100000001100
Q ss_pred cCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcccc
Q 000133 322 ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA 401 (2100)
Q Consensus 322 ~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~ 401 (2100)
+.+.+ + .-...+-.++. +.
T Consensus 302 d~~~~---------------------------------------------p-~~~~fa~~a~~---------------~v 320 (859)
T KOG1241|consen 302 DQGLP---------------------------------------------P-SSKYFARQALQ---------------DV 320 (859)
T ss_pred hcCCC---------------------------------------------c-hhhHHHHHHHh---------------Hh
Confidence 10000 0 01122222222 44
Q ss_pred HHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc
Q 000133 402 KRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND 474 (2100)
Q Consensus 402 i~~Lv~lL~~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~ 474 (2100)
+|.|+++|.. ++...-..|..||.-++....+ .|+. -.+|.+-.-+++++..-++.|+.+++.+-.+-+
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence 6667776643 2345667777777766654333 2222 345555556778999999999999999987666
Q ss_pred ccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCCcHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000133 475 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV-ESADAVPALLWLLKNGSANGKEIAAKTLNHL 553 (2100)
Q Consensus 475 ~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L 553 (2100)
..+......+++|.++.++.+++..+++.++|.|+.++.+.++.+.-. ...+.++.|++.|.+ .|++-.++||++-+|
T Consensus 397 ~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 397 PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISL 475 (859)
T ss_pred hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHH
Confidence 777778888999999999999999999999999999998766443221 224455666666654 688999999999999
Q ss_pred hcCC----------CC------CcHHHHHHHhhc---CCcchHHHHHHHHHHHHhccCchh--HHHHhhhccchHHHHHH
Q 000133 554 IHKS----------DT------ATISQLTALLTS---DLPESKVYVLDALKSMLSVVSFSD--ILREGSAANDAVETMIK 612 (2100)
Q Consensus 554 ~~~~----------~~------~~i~~L~~lL~~---~~~~~~~~a~~aL~~l~~~~~~~~--~~~~~i~~~~~i~~Lv~ 612 (2100)
+.+. ++ ..+..|++.-.. .....|..+.+||+.+-...+..- .++... .-....|-+
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~--l~il~kl~q 553 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT--LVILEKLDQ 553 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH--HHHHHHHHH
Confidence 8421 01 122233333221 233578889999998876655321 111100 000111111
Q ss_pred Hhc-----CC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhH
Q 000133 613 ILS-----ST----KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENR 682 (2100)
Q Consensus 613 lL~-----s~----~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~aa~aL~~L~~~~~~~~ 682 (2100)
.+. .. -.++|-.-|.+|..+.+....-+... ...++..+++.+.+ ++..+...|..+++.++.+...
T Consensus 554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~-~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~-- 630 (859)
T KOG1241|consen 554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREV-SDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGK-- 630 (859)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhH--
Confidence 222 11 13455556666666655433321111 22356667777766 5556788888999888765432
Q ss_pred HHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh--HHHHHHHHHHHHH
Q 000133 683 EVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS--GKTLAAAAIARLL 759 (2100)
Q Consensus 683 ~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~--~~~~Aa~aL~~l~ 759 (2100)
+..-.-..+.|.|..-|+.. +-.|-..|....+.|+-.-+...-...++++..|+..|.++.-. ++-.-..+...+.
T Consensus 631 ~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 631 GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence 11111134556666666432 22233444444444442222222334678888999999887643 3333333333332
Q ss_pred hcCccchhHhhhhhccCcHHHHHHhhhhcc------------cccchHhHHHHHHHH---HHcCCCCCCCCcccceeecc
Q 000133 760 HSRKIDYTITDCVNRAGTVLALVSFLESAS------------GSVATSEALDALAIL---SRSGGASGHVKPAWQVLAEF 824 (2100)
Q Consensus 760 ~~~~~~~~~~~~~~~~g~l~~li~~l~s~~------------~~v~~~~al~~L~~L---~~~~~~~~~~~~~~~~~~~~ 824 (2100)
-..+.+ +..| -+.+.++++...+.. ++.. +.++++.... ++++.... .++-.+
T Consensus 711 laIg~~--F~~Y---l~~vm~llq~as~~~~d~~~~~~~dYvd~LR-e~~leay~gi~qglk~~~~~~------~~~p~v 778 (859)
T KOG1241|consen 711 LAIGAD--FEPY---LEMVMPLLQQASSVQTDPADDSMVDYVDELR-EGILEAYTGIIQGLKTHADVM------LVQPYV 778 (859)
T ss_pred HHHHHh--HHHH---HHHHHHHHHHHHhccCCCCcccHHHHHHHHH-HHHHHHHHHHHHHhhcccchh------hhhcch
Confidence 211111 1111 112333333333211 1122 3344433322 22222211 222333
Q ss_pred CCCchhhhhhhccCC--hhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhh
Q 000133 825 PKSITPIVSSIADAT--PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 825 ~~~l~~L~~~l~~~~--~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~ 901 (2100)
+.++.-+.+.=.++. ..+-..|..++.-|+..-+...++++... ..+..++.+...|+...+|-.|.|+.-.+-|.
T Consensus 779 ~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~-~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 779 PHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDE-DWIKDFLNEGRKSSTQKTKDLARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcch-HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 444443333333332 45566666677666554444444444432 34445666677899999999999997665544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-09 Score=139.74 Aligned_cols=400 Identities=17% Similarity=0.138 Sum_probs=273.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+.+..++.++++.||+.|+.++..+....++. +... .++.+..++.++++.++..|+.++..+ ..+++... -.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~ 189 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SL 189 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-TH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hh
Confidence 455777888899999999999999998876663 2222 588899999999999999999999998 22222211 11
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--C
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--T 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~--~ 559 (2100)
-...+..|.+++...++-.+..+...|..++...+..... ...++.+..++++.++.+.-.++.++.++..... .
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~ 266 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQ 266 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHH
Confidence 1113445555567789999999999999888754444311 3467888888888888899999999988765443 2
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
..+++|..++.+.++++|..+.++|..++... +. .+. .....+..+. +++..+|..+...|.+++.. .
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~----~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~ 335 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PP----AVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE--S 335 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HH----HHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--H
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhccc--ch----hhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc--c
Confidence 56888999999888889988888888776543 11 111 1233344555 88999999999999999953 4
Q ss_pred hHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 639 LRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
+... +++.|...+ ...+++++..++..++.++...+... ...++.+++++....+.+...+...+.++
T Consensus 336 n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~------~~~v~~l~~ll~~~~~~~~~~~~~~i~~l 404 (526)
T PF01602_consen 336 NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA------EWYVDTLLKLLEISGDYVSNEIINVIRDL 404 (526)
T ss_dssp HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH------HHHHHHHHHHHHCTGGGCHCHHHHHHHHH
T ss_pred chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH------HHHHHHHHHhhhhccccccchHHHHHHHH
Confidence 4333 678888888 45578899999999999975432111 23678899999988888888889999998
Q ss_pred hcCcHHHHHHHHcCcHHHHHHHHccC-ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHh
Q 000133 718 ILDSEVSEKAIAEEIILPATRVLCEG-TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 796 (2100)
Q Consensus 718 ~~~~~~~~~~v~~~~v~~L~~ll~~~-~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~ 796 (2100)
+.+.+... ..++..|.+.+.+- ++..+..++|.+++........... ...+..++......+..+. ..
T Consensus 405 l~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~------~~~~~~l~~~~~~~~~~vk-~~ 473 (526)
T PF01602_consen 405 LSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESA------PDILRSLIENFIEESPEVK-LQ 473 (526)
T ss_dssp HHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHH------HHHHHHHHHHHTTSHHHHH-HH
T ss_pred hhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccH------HHHHHHHHHhhccccHHHH-HH
Confidence 85433322 24588888888874 4458899999999987654431001 1122233444333334455 88
Q ss_pred HHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhc--cCChhHHHHHHHHHHHH
Q 000133 797 ALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA--DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 797 al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~~~~~a~~~L~~L 853 (2100)
.+.++..+....+.... -+..+..+.+... +.++.+|+.|.+.+.-|
T Consensus 474 ilt~~~Kl~~~~~~~~~----------~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 474 ILTALAKLFKRNPENEV----------QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHSCSTTH----------HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhh----------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 89999988765543110 0134555555666 56899999999988765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-09 Score=121.57 Aligned_cols=380 Identities=16% Similarity=0.103 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh
Q 000133 1289 QHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV 1368 (2100)
Q Consensus 1289 ~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~ 1368 (2100)
.+.|...|.|++.+-...-.+ +..+++.-|++.|... +.++.......|..|+-..+.+..+...+.++.|+++..
T Consensus 280 Lrva~ylLlNlAed~~~ElKM---rrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKM---RRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHH---HHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 345889999999766555444 4678999999999875 567888888999999988898999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHH
Q 000133 1369 TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448 (2100)
Q Consensus 1369 ~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~ 1448 (2100)
..+++-+...+.-|.+++.+...|..+++.|.+|.|..++++... ..-|+..|..++-+ ++.|..+..+++|+.+.+
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk 432 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMK 432 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987654 23578888888887 489999999999999988
Q ss_pred HhccCCh-hHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCC
Q 000133 1449 ILHEAPD-FLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQ 1527 (2100)
Q Consensus 1449 ~L~~~~~-~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~ 1527 (2100)
.+-...+ ++-.+...+|.+|+-+.++......|.++..|...--.+. +.. -.+.+.|++++....+.. .-.
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~---D~l--LmK~vRniSqHeg~tqn~---Fid 504 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR---DLL--LMKVVRNISQHEGATQNM---FID 504 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc---chH--HHHHHHHhhhccchHHHH---HHH
Confidence 8755433 3444556688899988877765666777776665433222 111 256778887776544331 224
Q ss_pred ChHhhhhccC-CCCHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHhcc--CCHHHHHHHHHHHHHhhcCChhH-
Q 000133 1528 AIEPLIPLLD-SPAPAVQQLAAELLSHLLL-EEQLQKDPVTQQVIGPLIRVLGS--GIHILQQRAVKALVSIALTWPNE- 1602 (2100)
Q Consensus 1528 ~l~~Lv~~L~-~~~~~vq~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~lL~s--~~~~vr~~Al~AL~~Ls~~~~n~- 1602 (2100)
+++-|...++ +++++.-.++..+|+++.. +-++...+.+...+|.+-.-|.. ...++....+.+++..+.+...+
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~ 584 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCAR 584 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHH
Confidence 5677777777 5567788899999999976 45566777777888888888843 44568888888899888877664
Q ss_pred -HHhccChHHHHHHhcc--cCCCchHHHHHHHHHHHHhhhc--ccchhhhc--ccHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000133 1603 -IAKEGGVTELSKIILQ--ADPSLPHALWESAASVLSSILQ--FSSEFYLE--VPVAVLVRLLRSGSEGTVIGSLNALLV 1675 (2100)
Q Consensus 1603 -l~~~G~i~~Ll~lL~~--~~~~~~~~l~e~a~~~L~~i~~--~~~~~~~~--~~v~~Lv~ll~~~~~~~~~~a~~aL~~ 1675 (2100)
+..+|+|+.++++|.. +|+.... +...+.-.+.. .+..++.+ +.-..++.+.++.+.++|.-.-.+|-.
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~----QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVV----QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHH----HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7788999999999976 4543322 33444433332 23334433 456789999999999999999888887
Q ss_pred hccCChhhHHHH
Q 000133 1676 LESDDGTSAEAM 1687 (2100)
Q Consensus 1676 L~~~~~~~~~~i 1687 (2100)
++..+..=+..|
T Consensus 661 iae~d~EWAKrI 672 (791)
T KOG1222|consen 661 IAEHDKEWAKRI 672 (791)
T ss_pred HHHhhHHHHHHH
Confidence 777666544333
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-08 Score=116.96 Aligned_cols=586 Identities=14% Similarity=0.088 Sum_probs=330.3
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhh----hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLA----ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
.++|.|.++|.+++...++.|.++|..++.+.......-+. .-.+|.+++..++++ +.+|..|..++-.+--..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence 45899999999999999999999999998655432211000 135889999999876 5899999999877654222
Q ss_pred HhHHHHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCC-CcchhhhccccccCCCChhhhhhhhhhhH
Q 000133 261 DARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG-LSNVISSLGQSLESCSSPAQVADTLGALA 338 (2100)
Q Consensus 261 ~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~-~~~~i~~l~~~~~~~~~~~~~~~~~gal~ 338 (2100)
+.....- .-++.+..+-.. .++.++.+.+.+|..+..- .+.++.. ..+.++
T Consensus 207 --qal~~~iD~Fle~lFalanD---------~~~eVRk~vC~alv~Llevr~dkl~ph----------------l~~Ive 259 (885)
T KOG2023|consen 207 --QALYVHIDKFLEILFALAND---------EDPEVRKNVCRALVFLLEVRPDKLVPH----------------LDNIVE 259 (885)
T ss_pred --HHHHHHHHHHHHHHHHHccC---------CCHHHHHHHHHHHHHHHHhcHHhcccc----------------hHHHHH
Confidence 1111111 123333333322 2478999999998876541 1111111 134455
Q ss_pred HHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc--cccHHHHHHhhcCC----
Q 000133 339 SALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLITMA---- 412 (2100)
Q Consensus 339 ~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL~~~---- 412 (2100)
|+++..+. .++.|.-.|++-...++.+|..+..+.. ...+|.|+.-+...
T Consensus 260 yML~~tqd------------------------~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 260 YMLQRTQD------------------------VDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHccC------------------------cchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 55554441 1223455555555555555533222221 11233333222100
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 413 ----------------------------------------------------TNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 413 ----------------------------------------------------~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
+...|+..+.+|-.|+.-- ++.+..
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf---~~elL~ 392 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF---GDELLP 392 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhh---HHHHHH
Confidence 0234544444444444321 112211
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC--hhh
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS--EDI 518 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~--~~~ 518 (2100)
-.+|.|-+.|.++...+++.++.+|+.++.+.-+. ..-.--..||.|+++|.+..+-+|.-+||+|...+..- +..
T Consensus 393 -~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g-~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 393 -ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG-FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred -HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh-cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 23566666777889999999999999998542211 00011125788999999999999999999999887531 111
Q ss_pred HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhc-------CCcchHHHHHHHHHHHHhcc
Q 000133 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-------DLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 519 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~-------~~~~~~~~a~~aL~~l~~~~ 591 (2100)
...+. .++..|+..+-+++.++++.||.+..-+-....++-+|-|-.+|.. .......-...|+|.++...
T Consensus 471 ~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 471 DEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred HhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 12221 2444555555568899999999999999777666666655444432 22222223456677666533
Q ss_pred ----CchhHHHHhhhccchHHHHHH---HhcCCC-------------------------HHHHHHHHHHHHH----HhcC
Q 000133 592 ----SFSDILREGSAANDAVETMIK---ILSSTK-------------------------EETQAKSASALAG----IFET 635 (2100)
Q Consensus 592 ----~~~~~~~~~i~~~~~i~~Lv~---lL~s~~-------------------------~~~~~~Aa~aL~~----L~~~ 635 (2100)
+.+.-++-. +|+|++ ++++++ +++-..+...+.+ ++..
T Consensus 549 g~~Ln~~~YiqiL------mPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 549 GHALNKPAYIQIL------MPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHhcCcHHHHHHh------ccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 222212211 344443 222222 3344444444442 2221
Q ss_pred Ch----------------------------hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 000133 636 RK----------------------------DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAV 687 (2100)
Q Consensus 636 ~~----------------------------~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~ 687 (2100)
.. +....+...+....+..-+.+..++++..+-.-|+-++....+ ++...
T Consensus 623 ~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p~ 700 (885)
T KOG2023|consen 623 QQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIPN 700 (885)
T ss_pred cCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccch
Confidence 11 0111134445555556666788888888888888888665422 22111
Q ss_pred hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChh--HHHHHHHHHHHHHhcCccc
Q 000133 688 ARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS--GKTLAAAAIARLLHSRKID 765 (2100)
Q Consensus 688 ~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~--~~~~Aa~aL~~l~~~~~~~ 765 (2100)
-.++++.|-.-+......+--+|+||++.|+..-....+..-..++..|...++..... +-++.|-.+.++....+..
T Consensus 701 ~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 701 LADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 12344444433444555677999999999984422222233456777787777766554 6888898999988766542
Q ss_pred hhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc---CChhH
Q 000133 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD---ATPLL 842 (2100)
Q Consensus 766 ~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~~ 842 (2100)
. .. .-+..+.+-+..++..++..-++.|+..+-++.+..+. .+-.++.-++.++++ ....+
T Consensus 781 v--Ap--~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~------------~vv~~~~f~c~aiAsw~np~~~l 844 (885)
T KOG2023|consen 781 V--AP--HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS------------GVVSSFIFICDAIASWSNPEDDL 844 (885)
T ss_pred c--ch--hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch------------hhhhhhHHHHHHHhcccChHHHH
Confidence 1 11 12446677777777776444447777777776544432 111222223333333 33678
Q ss_pred HHHHHHHHHHH
Q 000133 843 QDKAIEILSRL 853 (2100)
Q Consensus 843 ~~~a~~~L~~L 853 (2100)
|+...++|..+
T Consensus 845 ~~~f~kiL~g~ 855 (885)
T KOG2023|consen 845 RDEFYKILQGF 855 (885)
T ss_pred HHHHHHHHHHH
Confidence 88888888877
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-10 Score=127.71 Aligned_cols=227 Identities=19% Similarity=0.202 Sum_probs=175.2
Q ss_pred HHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 000133 438 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~ 516 (2100)
+.+.+.++.|+.+|+. .++.+++.+..+++|.+ .++.++..+.+.||++.+..++.++++.+|+.|.++|.|++. +.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence 3566788999999995 68999999999999998 489999999999999999999999999999999999999997 46
Q ss_pred hhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCch
Q 000133 517 DIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 594 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~ 594 (2100)
+++..+.. .++.+++...+. +..++..+.++|.||+...+.
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----------------------------------- 128 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----------------------------------- 128 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-----------------------------------
Confidence 77777654 467777665553 446777777777777543221
Q ss_pred hHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC-CHHHHHHHHHHHHH
Q 000133 595 DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-SECILVEASRCLAA 673 (2100)
Q Consensus 595 ~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~ 673 (2100)
+..+. +.++.++.+|.+++..+|..+..+|.||+.+ +.+...+..++++..++.++..+ +.++...+...+.|
T Consensus 129 ---~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 129 ---HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred ---hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 11221 2489999999999999999999999999997 77778888889999999999664 67889999999999
Q ss_pred HhcCCchhHH-------------HHHHhCC-ChHHHHHHhCCCCHHHHHH
Q 000133 674 IFLSVRENRE-------------VAAVARD-ALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 674 L~~~~~~~~~-------------~~~~~~~-~l~~Lv~ll~~~~~evr~~ 709 (2100)
+..+...... ..+.+.+ ..+.|..+..++++|||++
T Consensus 203 i~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 203 INENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 9654432211 1122222 4455566666777777764
|
|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-11 Score=123.01 Aligned_cols=113 Identities=20% Similarity=0.389 Sum_probs=97.1
Q ss_pred CCceeeeeccchhhhhh--------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQSV--------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
|+|.|+|++..++...- |.+.-|+.+.+|+ ...+|++++++.+|+|+|.|.|.+. ++.++.+.|+|++++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~-~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVD-EVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeC-CCCCCEEEEEEEecC
Confidence 88999999999997642 4567899999976 7889999999999999999999886 457899999999999
Q ss_pred ccCCcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEe
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
.++.+.+|+++|+++++...|....-|.|.+. ++|+. .++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~G~~---~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV-KSGRL---HLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCC-CCceE---EEEEeC
Confidence 99666789999999999999999999999543 56764 588988
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-06 Score=106.25 Aligned_cols=479 Identities=15% Similarity=0.138 Sum_probs=285.2
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHH-hhcCChHhHH
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKS-LSDHCKDARR 264 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~-Ls~~~~~~~~ 264 (2100)
++.|.. --++|+.++.+|-.-|.++...+ ...| +..|.+.|.+.+. ...|..|--.|.| |..++++.++
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~n---f~~F-----~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQN---FPQF-----LVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhcc---HHHH-----HHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 344444 45678888888888887666442 2333 5566666665443 5677777777877 4444555444
Q ss_pred HHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 265 EIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 265 ~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
...+. =+++. +..+.+..++.++|. .. -|+.+...+...++++.+
T Consensus 75 ~~~qRWl~l~~---------------e~reqVK~~il~tL~---~~-------------ep~~~s~Aaq~va~IA~~--- 120 (859)
T KOG1241|consen 75 QYQQRWLQLPA---------------EIREQVKNNILRTLG---SP-------------EPRRPSSAAQCVAAIACI--- 120 (859)
T ss_pred HHHHHHHcCCH---------------HHHHHHHHHHHHHcC---CC-------------CCCccchHHHHHHHHHHh---
Confidence 43321 12221 112334444444443 10 122222222233333221
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc-cccHHHHHHhhc--CCCHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-SEAKRLLVGLIT--MATNEVQEEL 420 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~-~g~i~~Lv~lL~--~~~~~v~~~A 420 (2100)
+ -....-| +++..|+.-.....+..+|+...++++.+...-+-...... ...+..++.-++ .++..+|..|
T Consensus 121 -E----lP~n~wp-~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa 194 (859)
T KOG1241|consen 121 -E----LPQNQWP-ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAA 194 (859)
T ss_pred -h----CchhhCH-HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHH
Confidence 1 0000011 34445555555555557899999999988654222221111 223444555554 3577899999
Q ss_pred HHHHHHhh-ccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHH
Q 000133 421 VRALLKLC-NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 421 ~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
..+|.|-- ..+.++....-..-.++...+.-.+++.+++..|..+|..+..-.-+.-..-......+.-+..+.+.+++
T Consensus 195 ~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de 274 (859)
T KOG1241|consen 195 LNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE 274 (859)
T ss_pred HHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99998732 21112211211112356777778889999999999999988753333222222333444455667788999
Q ss_pred HHHHHHHHHHHHhcCChhhH------HH-----------HHh---CCcHHHHHHHhhc-------CChhHHHHHHHHHHH
Q 000133 500 AKEDSASILRNLCNHSEDIR------AC-----------VES---ADAVPALLWLLKN-------GSANGKEIAAKTLNH 552 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~------~~-----------i~~---~g~i~~Lv~lL~~-------~~~~~~~~Aa~aL~~ 552 (2100)
+.-++..--.++|.. ++- .. +.+ .+++|.|+++|.. .+|..-+.|..+|.-
T Consensus 275 ValQaiEFWsticeE--EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l 352 (859)
T KOG1241|consen 275 VALQAIEFWSTICEE--EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLML 352 (859)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHH
Confidence 998888887778753 211 11 111 3677899999865 245677778788877
Q ss_pred HhcCCCCCcHHHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Q 000133 553 LIHKSDTATISQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628 (2100)
Q Consensus 553 L~~~~~~~~i~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~a 628 (2100)
++..-.+..+|+.+.. ++++++..|+.+..++|++..-. .++..... -.+++|.++.++.+++-.++..++|+
T Consensus 353 ~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwt 429 (859)
T KOG1241|consen 353 FAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWT 429 (859)
T ss_pred HHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHH
Confidence 7765566677776665 55788889999999988765432 22222222 35679999999999999999999999
Q ss_pred HHHHhcCChhhH-HHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH----HHhCCChHHHH-HHhCC-
Q 000133 629 LAGIFETRKDLR-ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA----AVARDALSPLV-VLAGS- 701 (2100)
Q Consensus 629 L~~L~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~----~~~~~~l~~Lv-~ll~~- 701 (2100)
|+.++...++.+ ........++.|+..|.+. +++...+|+++.+|+.+..+..... +.+ ...+.++ .|++.
T Consensus 430 lgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~t 507 (859)
T KOG1241|consen 430 LGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVT 507 (859)
T ss_pred HHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhc
Confidence 999998766432 2233445777888888765 5799999999999974332211110 111 2333444 34432
Q ss_pred -----CCHHHHHHHHHHHHHHhcCc
Q 000133 702 -----PVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 702 -----~~~evr~~aa~aL~~L~~~~ 721 (2100)
.....|..|-.||..|+...
T Consensus 508 dr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 508 DRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred cccccchhhHHHHHHHHHHHHHHcC
Confidence 34458899999999998553
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-08 Score=121.54 Aligned_cols=497 Identities=14% Similarity=0.080 Sum_probs=291.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHh
Q 000133 104 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 183 (2100)
Q Consensus 104 L~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~ 183 (2100)
+-+.+++....|..-..|...+. ...+..+++.|++|.|..+++..+.... .+......+..+..........+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~---~~~K~~~ik~GAv~~Ll~L~s~e~~s~~-~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGF---TDNKETNIKLGAVELLLALLSLEDGSTE-LKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcC---CCccchhhhhcchHHHHhhccccCCchh-hhhhHHHHHHhHHhhccchHHHHHH
Confidence 34556666555666666766642 2224458899999999999987654433 3333445566666666677778999
Q ss_pred cCCHHHHHHhHccCC-HHHHHHHHHHHHHHhhcCcc--hhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 184 AGGIDILVKLLTLGQ-SSTQAHVCFLLACMMEEDVS--VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 184 ~g~v~~Lv~lL~s~~-~~v~~~a~~~L~~L~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
++-++.|.+++.++| ..++....+++..+-..++. ..........++.+.-++....+ .....-+....+++. .+
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk-~~~~l~~~~~a~~s~-~~ 171 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK-YISRLDVSRAAHLSS-TK 171 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh-hhhhhhhhhhccccc-cc
Confidence 999999999999999 77899999999887755431 22222334455555555552332 344444455555655 45
Q ss_pred HhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH---HhhCCCcchhhhccccccCCCChhhhhhhhhhh
Q 000133 261 DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA---NISGGLSNVISSLGQSLESCSSPAQVADTLGAL 337 (2100)
Q Consensus 261 ~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~---nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal 337 (2100)
+.+.....+|..+.+.-++...+ ..++..+..+++ ++... .|
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s---------~~~RlaaL~~~sr~~~iL~N-------------n~------------- 216 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLS---------SKLRLAALLCLSRGDRILRN-------------NP------------- 216 (678)
T ss_pred hhhheeccccchhhHHHHHHhhh---------HHHHHHHHHHhhccceeeec-------------Cc-------------
Confidence 77777778888777666554322 345555555444 11110 00
Q ss_pred HHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHH--HHHHhhcCCCHH
Q 000133 338 ASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR--LLVGLITMATNE 415 (2100)
Q Consensus 338 ~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~--~Lv~lL~~~~~~ 415 (2100)
.....++. .+...|..+ .+-+++++++..
T Consensus 217 --------------------~~sm~~l~-----------------------------~L~d~~v~~r~~v~rL~k~~~~s 247 (678)
T KOG1293|consen 217 --------------------LGSMFLLG-----------------------------LLKDKGVNIRCVVTRLLKDPDFS 247 (678)
T ss_pred --------------------hhHHHHHH-----------------------------HHhccccchhhhhhhhhhCCCcc
Confidence 00000111 111222222 234456677777
Q ss_pred HHHHHHHHHHHhhccCccc-----hHHHHhCCc--HH--HHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 416 VQEELVRALLKLCNNEGSL-----WRALQGREG--IQ--LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~--i~--~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.+..++.++.+++..+-++ +..+.+.|- +- ..+.+...+-......++...|-++..-...+...++...+
T Consensus 248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~ 327 (678)
T KOG1293|consen 248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATL 327 (678)
T ss_pred HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhh
Confidence 8888888988888765221 122233331 11 11112222221222233334444443233444555556666
Q ss_pred HHHHHhccCC------CHHHHHHHHHH---HHHHhcCC-hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 487 PPLVQILESG------SAKAKEDSASI---LRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 487 ~~Lv~lL~~~------~~~vre~A~~a---L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
+.+++++... .++.|.-++.- +..++... -..++.+.+......+..+...
T Consensus 328 ~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~------------------- 388 (678)
T KOG1293|consen 328 KTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPI------------------- 388 (678)
T ss_pred hhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccccc-------------------
Confidence 6666666432 22222111110 00011000 0112222221111111111111
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.+...+..+..++.++.... ...+.+..+.++...|++++..++-.++..+..+|+|+.-..
T Consensus 389 ---------------kd~~~~aaa~l~~~s~srsV---~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef 450 (678)
T KOG1293|consen 389 ---------------KDHDFVAAALLCLKSFSRSV---SALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF 450 (678)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHH---HHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence 22233333444444333211 113445667788999999999999999999999999999888
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
.+.+..+...|+|..+...+.+.++.++..+.++|+++.-...+..+......=.-..+..+..+++++|++++...|.|
T Consensus 451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999776655444444444456677789999999999999999999
Q ss_pred HhcCcHHHHHH
Q 000133 717 LILDSEVSEKA 727 (2100)
Q Consensus 717 L~~~~~~~~~~ 727 (2100)
+.+++.....+
T Consensus 531 l~c~~~~svdf 541 (678)
T KOG1293|consen 531 LTCNSRKSVDF 541 (678)
T ss_pred hhcCcHHHHHH
Confidence 99886544333
|
|
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-10 Score=118.76 Aligned_cols=111 Identities=23% Similarity=0.453 Sum_probs=92.1
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|+|.+..+++.. +|.+.-++.+.+++ +..++|||++++.||+|||.|.|.+. ++..++|.|+|+++++|+.+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~-~~~~~~l~v~v~d~d~~~~~ 79 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ-SQVKNVLELTVMDEDYVMDD 79 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeC-cccCCEEEEEEEECCCCCCc
Confidence 489999999999765 45566788888874 46689999999999999999999887 45678999999999999888
Q ss_pred ccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEE
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEF 2095 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2095 (2100)
.+|++.|+++++.....+...|.|.+. +.|. |.|||
T Consensus 80 ~iG~~~~~l~~l~~g~~~~~~~~L~~~-~~g~---l~~~~ 115 (119)
T cd04036 80 HLGTVLFDVSKLKLGEKVRVTFSLNPQ-GKEE---LEVEF 115 (119)
T ss_pred ccEEEEEEHHHCCCCCcEEEEEECCCC-CCce---EEEEE
Confidence 889999999999888888999999553 3555 44555
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-07 Score=111.16 Aligned_cols=406 Identities=14% Similarity=0.130 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHccCCCh-hHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchh
Q 000133 9 ASVAQCIEQLRQSSSSV-QEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL 87 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~-~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~ 87 (2100)
.++.++.++++...... +--+.|+..|..+++.-..--++.. ...|..|++.|.-.+.+.-.-+...|..|+--.++
T Consensus 260 ~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrr--kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN 337 (791)
T KOG1222|consen 260 EEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRR--KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN 337 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc
Confidence 44556666655432111 1124567778888887652222111 25789999999999898888999999999977888
Q ss_pred hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHH
Q 000133 88 RVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGAL 167 (2100)
Q Consensus 88 ~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL 167 (2100)
+..+.+.|.+..|+++....+++.+.+....|+|+|. +...+..|+..|.+|.|..+|.+.+.. +.|...|
T Consensus 338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF----D~glr~KMv~~GllP~l~~ll~~d~~~-----~iA~~~l 408 (791)
T KOG1222|consen 338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF----DSGLRPKMVNGGLLPHLASLLDSDTKH-----GIALNML 408 (791)
T ss_pred hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc----cccccHHHhhccchHHHHHHhCCcccc-----hhhhhhh
Confidence 9999999999999999999999999999999999999 566688899999999999999875433 2456678
Q ss_pred HHhccCChhhHHHHHhcCCHHHHHHhHccC-CHHHHHH-HHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHH
Q 000133 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLG-QSSTQAH-VCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVR 245 (2100)
Q Consensus 168 ~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~-~~~v~~~-a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~ 245 (2100)
+.++.++ ..+.-+.-..+|+.+.+.+-++ +.++-.. .+.++ +++.... +...+.+..++..|++.--.+.|.
T Consensus 409 Yh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci-Nl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~--- 482 (791)
T KOG1222|consen 409 YHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI-NLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL--- 482 (791)
T ss_pred hhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH-HHHhccc-cceEEecCcchHHHHHHHhcccch---
Confidence 8887665 3444355668899888866553 3344322 22333 6665433 556667778888888876555552
Q ss_pred HHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC-cchhhhccccccCC
Q 000133 246 AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL-SNVISSLGQSLESC 324 (2100)
Q Consensus 246 ~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~-~~~i~~l~~~~~~~ 324 (2100)
.-..+++|++.+....+..+.+. +..|...+...+ .+.+.-.+.++|+|+...+ ++
T Consensus 483 -lLmK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~--------~E~F~~EClGtlanL~v~dldw------------ 539 (791)
T KOG1222|consen 483 -LLMKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDN--------SESFGLECLGTLANLKVTDLDW------------ 539 (791)
T ss_pred -HHHHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCc--------hHHHHHHHHHHHhhcccCCCCH------------
Confidence 23457889998655455555554 333444343322 2345556666777665421 00
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHH
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 404 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~ 404 (2100)
+. +++ ....+|.+...|.++..+
T Consensus 540 -------------~~---ilq----------~~~LvPw~k~~L~pga~e------------------------------- 562 (791)
T KOG1222|consen 540 -------------AK---ILQ----------SENLVPWMKTQLQPGADE------------------------------- 562 (791)
T ss_pred -------------HH---HHh----------hccccHHHHHhhcCCccc-------------------------------
Confidence 00 000 012333333333333221
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC--CCHHHHHHHHHHHHHhccCCcccHHH-HH
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL--SSEQQQECSVALLCLLSNENDDSKWA-IT 481 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~v~~~A~~aL~nLs~~~~~~~~~-i~ 481 (2100)
.+.+...+-+++.++.+ ......+..++.|+.|+++|+. .+++...+...++..+..+ ...+.. +.
T Consensus 563 ---------ddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik 631 (791)
T KOG1222|consen 563 ---------DDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK 631 (791)
T ss_pred ---------hhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 12333333344444443 2333455567899999999985 3667777777777777764 444444 44
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
+...-..|+.++.+.+.++|+-|-.+|--++.++.+-...|
T Consensus 632 et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI 672 (791)
T KOG1222|consen 632 ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRI 672 (791)
T ss_pred hccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555679999999999999999999999998766654444
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=121.17 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=160.6
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
+-.+-|+.+|+...+..+|+.+..++++.+..|.++..+.+.|+++.+..++.++++.++..|+.+|.|++.+. +++..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHH
Confidence 33466777888777777899999999999999999999999999999999999999999999999999999884 44555
Q ss_pred HHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 000133 438 LQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS 515 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~ 515 (2100)
+. ..++.+.+.+.+. +..+|..+..+|.||+. .++.+..+. +.++.++.+|..++..+|.++.++|.||+. +
T Consensus 91 Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-n 164 (254)
T PF04826_consen 91 IK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-N 164 (254)
T ss_pred HH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-C
Confidence 53 3566666654443 78999999999999985 555556654 479999999999999999999999999998 4
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcC
Q 000133 516 EDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~ 556 (2100)
+.....+...+++..++.+++.. +.+....+.....|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 77777777888999999999986 566788888888888653
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-07 Score=113.53 Aligned_cols=627 Identities=13% Similarity=0.084 Sum_probs=338.8
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhc---cCChHHHHHHhhccCCCcchHHHHHHHHHHHhc
Q 000133 95 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST---EGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS 171 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~---~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~ 171 (2100)
..+|.|..+|.+++...++-|..||..++.+.. +...+. +.+ +-.+|.+++..+.. .+.++..+..|+-.+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa-~~lds~-~~~rpl~~mipkfl~f~~h~---spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA-QFLDSD-VLTRPLNIMIPKFLQFFKHP---SPKIRSHAVGCVNQFI 202 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH-HHHhhh-cccCchHHhHHHHHHHHhCC---ChhHHHHHHhhhhhee
Confidence 357889999999998999999999999998422 110010 001 12377788777664 4558888887776654
Q ss_pred cCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHH
Q 000133 172 TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGA 251 (2100)
Q Consensus 172 ~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~a 251 (2100)
-.....-. ..=...++.+..+-...+++||.+.|..|..|..-.++..... -.+.+...++.-+. .|.++-.+|+.-
T Consensus 203 ~~~~qal~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd-~dE~VALEACEF 279 (885)
T KOG2023|consen 203 IIQTQALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQD-VDENVALEACEF 279 (885)
T ss_pred ecCcHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccC-cchhHHHHHHHH
Confidence 33221111 1112346677777788999999999999987775444221111 13456666665555 456899999999
Q ss_pred HHHhhcCChHhHHHHHhC--CChHHHHHhhcCCCcchh-hh---------hhhHHHH--HHHHHHHHHhhCCCcchhhhc
Q 000133 252 LKSLSDHCKDARREIAGS--NGIPAMINATIAPSKEFM-QG---------EYAQALQ--ENAMCALANISGGLSNVISSL 317 (2100)
Q Consensus 252 L~~Ls~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~e~~-~~---------~~~~~l~--~~a~~aL~nl~~~~~~~i~~l 317 (2100)
...++. .+..+..+... .-+|.|+.-|..++.+.. -+ ..+++++ .+-. .....
T Consensus 280 wla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhks------------k~~~~ 346 (885)
T KOG2023|consen 280 WLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKS------------KEHGN 346 (885)
T ss_pred HHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhc------------hhccC
Confidence 999987 44555554432 456777666554431110 00 0000000 0000 00000
Q ss_pred ccc--ccCCCCh-----hhhhh-h-hhhhHHHHHHhccccCCCCCCCchhh----HHHHHhhcCCCCChHHHHHHHHHHH
Q 000133 318 GQS--LESCSSP-----AQVAD-T-LGALASALMIYDSKAESTKPSDPLIV----EQTLVNQFKPRLPFLVQERTIEALA 384 (2100)
Q Consensus 318 ~~~--~~~~~~~-----~~~~~-~-~gal~~ll~~l~~~~~~~~~~~~~~i----~~~Lv~lL~~~~~~~vq~~aa~aL~ 384 (2100)
+.. -++.... ....+ + ..+.+..+.++.. +-+..+ .|.|.+.|.+ ....+|+.+.-+++
T Consensus 347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~-~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSS-EEWKVREAGVLALG 418 (885)
T ss_pred ccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHHH
Confidence 000 0000000 00000 0 0112222222220 111234 4444444444 45678999999999
Q ss_pred HHhC--CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcHHHHHHhhCCCCHHHHH
Q 000133 385 SLYG--NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLLGLSSEQQQE 460 (2100)
Q Consensus 385 ~L~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~v~~ 460 (2100)
.++. .......+. ..+|.|+.+|.++.+-||.-.||.|...+.--. ...+.+. ..+..|+..+-+++..||+
T Consensus 419 AIAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQE 494 (885)
T KOG2023|consen 419 AIAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQE 494 (885)
T ss_pred HHHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHH
Confidence 8853 233344444 358889999999999999999999987654211 1111111 2334444444578999999
Q ss_pred HHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHh--
Q 000133 461 CSVALLCLLSNENDDSKWAITAAGGIPPLVQILES---GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-- 535 (2100)
Q Consensus 461 ~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-- 535 (2100)
+|+.++..+-.. ....-..+-...+..|+..++. .+.-+...|..+|.+=+.+.-..+..+ +=.+|||++-.
T Consensus 495 AAcsAfAtleE~-A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPLi~KW~~ 571 (885)
T KOG2023|consen 495 AACSAFATLEEE-AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPLIEKWEL 571 (885)
T ss_pred HHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHHHHHHHh
Confidence 999999988532 2111111122233444444432 244455667777766554311111111 12457776433
Q ss_pred -hcCChhHHHHHHHHHHHHhcC---C-CC---CcHHHHHHHh--------hcCC--------cchHHHHHHHHHHHHh-c
Q 000133 536 -KNGSANGKEIAAKTLNHLIHK---S-DT---ATISQLTALL--------TSDL--------PESKVYVLDALKSMLS-V 590 (2100)
Q Consensus 536 -~~~~~~~~~~Aa~aL~~L~~~---~-~~---~~i~~L~~lL--------~~~~--------~~~~~~a~~aL~~l~~-~ 590 (2100)
.+.+.+. ---..+|..++.. + -| ........++ +... .+.-.-+..-+..++. .
T Consensus 572 lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL 650 (885)
T KOG2023|consen 572 LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL 650 (885)
T ss_pred cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence 3333221 1111111111110 0 00 0111111111 1111 1111112222222222 1
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
.+ .++..+...+....+..++.+.-+++|+.|...|+.++....+.. ...-+..+|.+-.-+......+...|+++
T Consensus 651 g~---~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WA 726 (885)
T KOG2023|consen 651 GS---HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWA 726 (885)
T ss_pred hh---chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence 11 123345556667788889999999999999999999987543211 11222345555555566666789999999
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHHhCCC--CHHHHHHHHHHHHHHhc-CcHHHHHHHHcCcHHHHHHHHccCChhH
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVLAGSP--VLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISG 747 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~--~~evr~~aa~aL~~L~~-~~~~~~~~v~~~~v~~L~~ll~~~~~~~ 747 (2100)
+|-++.......+. .-...+..|+..++.+ ..++-++.+.+++.|.. .++.....++.-.-|+...+-.-++++.
T Consensus 727 iGeia~k~g~~~~~--~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneE 804 (885)
T KOG2023|consen 727 IGEIALKMGLKMKQ--YVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEE 804 (885)
T ss_pred HHHHHHHhchhhhh--HHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchh
Confidence 99997654322221 2233556666666654 44577999999999984 3444444555566666666666777888
Q ss_pred HHHHHHHHHHHHhcCcc
Q 000133 748 KTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 748 ~~~Aa~aL~~l~~~~~~ 764 (2100)
+..|-+.++++..-.+.
T Consensus 805 K~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 805 KESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHHHHHHHHheeeCch
Confidence 99999999999875554
|
|
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-10 Score=118.25 Aligned_cols=116 Identities=21% Similarity=0.402 Sum_probs=95.7
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-ccc
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SFG 2058 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2058 (2100)
|+|+|.+..++...+|.+.-||.+.+++ ...++|+|++++.||+|+|.|.|.+ ++.++.|.|+|++++.+|++ .+|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~--~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL--SPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe--CCCCCEEEEEEEECCCCCCCceEE
Confidence 6899999999988666688999999975 5668999999999999999998876 46688999999999999754 569
Q ss_pred eEEEEEeeEEeecccccceeecCCC-C-CCCCcceEEEEEec
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPES-K-SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 2098 (2100)
++.|+++.+...+.....|.|.+.. + ....-+|.++++|-
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 9999999999988888899997652 1 22344577888874
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-10 Score=116.66 Aligned_cols=103 Identities=23% Similarity=0.465 Sum_probs=88.5
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
|.|.|+|.+..++.. .+|.+.-++.+.+|+ ..++|+++.+ +.||+|+|.|.|.+. ++..+.|.|+|++++.+|.+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~-~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEIT-EDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEec-CCCCCEEEEEEEeCCCCCCc
Confidence 789999999999864 456677899999986 6678998865 689999999999887 44678999999999999988
Q ss_pred ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.+|++.|++++++..+.....|.|...+
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~ 106 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG 106 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC
Confidence 8999999999998887889999997654
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-06 Score=114.31 Aligned_cols=467 Identities=12% Similarity=0.092 Sum_probs=298.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+-++.++.+++..+++-+.-.+.+.+..+++. .+ -++..|.+=+.++++-+|..|..+|+++-. ++....
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-- 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-- 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH--
Confidence 445677888999999999999998887765542 12 356778888889999999999999888852 332222
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-- 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-- 559 (2100)
.++++.+.+.+.++-||..|+.++.++...+++ .+.+.|.++.|.++|.+.++.+...|..+|..+......
T Consensus 141 ---l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 141 ---TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 456788889999999999999999999875553 344577889999999999999999999999999764421
Q ss_pred ----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 560 ----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 560 ----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
..+..|+..+.+-++-.+...++.|.. ..+..+ .. ....+..+...|++.++.+...|+.++.++...
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~--~e---~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDK--ES---AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCc--HH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 334445555555444455555665543 222111 00 123477788889999999999999999999864
Q ss_pred C-hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000133 636 R-KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCAL 714 (2100)
Q Consensus 636 ~-~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL 714 (2100)
. ++....+ -....++|+.++ +++++++--+++.|.-+....+. +... .+..+.-...++. .+|......|
T Consensus 287 ~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~-----lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL 357 (746)
T PTZ00429 287 CSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPN-----LLRT-NLDSFYVRYSDPP-FVKLEKLRLL 357 (746)
T ss_pred CCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHH-----HHHH-HHHhhhcccCCcH-HHHHHHHHHH
Confidence 3 2322222 123447788775 45668898999888777554321 1111 2444444444444 4899999999
Q ss_pred HHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccch
Q 000133 715 ANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 794 (2100)
Q Consensus 715 ~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~ 794 (2100)
..|+..... . .++.-|.++..+.+.+.++.+.+++.++....+. ....++..|++++.. +.++.
T Consensus 358 ~~Lane~Nv-~-----~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--------~a~~cV~~Ll~ll~~-~~~~v- 421 (746)
T PTZ00429 358 LKLVTPSVA-P-----EILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--------VAPDCANLLLQIVDR-RPELL- 421 (746)
T ss_pred HHHcCcccH-H-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHhcC-CchhH-
Confidence 988754332 2 3567778888888888999999999999864443 124556677777764 33455
Q ss_pred HhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhh---ccCChhHHHHHHHHHHHHhcCCcccchhcccccccc
Q 000133 795 SEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSI---ADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGC 871 (2100)
Q Consensus 795 ~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l---~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~ 871 (2100)
.+++.++.++.+..+.. ..+..|+..+ .-.++..+....+++.+|+. .|..+...
T Consensus 422 ~e~i~vik~IlrkyP~~--------------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~--------~I~~a~~~ 479 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPEL--------------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD--------FIENGKDI 479 (746)
T ss_pred HHHHHHHHHHHHHCccH--------------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh--------hHhhHHHH
Confidence 57888999987755430 1233333322 12357788888889988843 33332223
Q ss_pred hHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhh
Q 000133 872 ISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRY 951 (2100)
Q Consensus 872 ~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~ 951 (2100)
...+++.|.+ ++.++|...--+.+++.-... ......+..++..+.... .++|.+..|.-..+.
T Consensus 480 L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p----------~~~~~~l~~vL~~~t~~~-----~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 480 IQRFIDTIME-HEQRVQLAILSAAVKMFLRDP----------QGMEPQLNRVLETVTTHS-----DDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHhcC-----CChhHHHHHHHHHHH
Confidence 3333444433 456677654444444432210 011222333333332222 456777777777776
Q ss_pred hcc
Q 000133 952 TSE 954 (2100)
Q Consensus 952 l~~ 954 (2100)
|+.
T Consensus 544 Ls~ 546 (746)
T PTZ00429 544 LSK 546 (746)
T ss_pred HcC
Confidence 543
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-10 Score=119.92 Aligned_cols=106 Identities=21% Similarity=0.365 Sum_probs=89.4
Q ss_pred CCceeeeeccchhhh--------------------------------hhCCCcceEEEecCCCCCccccccccCCCcccc
Q 000133 1979 GTLVVIIKRGNNMKQ--------------------------------SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWE 2026 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026 (2100)
|+|-|+||+.+++.+ ..|.+..++.+++|+..-.+|||++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 788889998887754 344567899999987655689999999999999
Q ss_pred ccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceeecCCCCCC
Q 000133 2027 ESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2086 (2100)
|.|.|.+. ..++.|.+.|||++.||.+.+|+++|+++++...+.+...|.|...++++
T Consensus 87 E~F~~~~~--~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 87 ESFHIYCA--HYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred eEEEEEcc--CCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCC
Confidence 99998764 44689999999999999999999999999999888889999997664443
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-09 Score=108.85 Aligned_cols=117 Identities=33% Similarity=0.407 Sum_probs=110.0
Q ss_pred HHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 000133 438 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~ 517 (2100)
+.+.|+++.|++++.++++.++..++++|.+++...++....+.+.|+++.|++++.+++++++..++++|++|+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55779999999999999999999999999999987788999999999999999999999999999999999999998777
Q ss_pred hHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000133 518 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 554 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~ 554 (2100)
.+..+.+.|+++.|++++.+.+.++++.++++|++|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999986
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=111.48 Aligned_cols=102 Identities=17% Similarity=0.319 Sum_probs=84.7
Q ss_pred CCCceeeeeccchhhhh-hCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|.|+|....+++.. +|.+.-+|.+++|+. ..+|||+.+ +.||+|||.|.+.+. +..+.|+++++|++.||++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~--~~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLP--EGVDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEec--CCCcEEEEEEEeCCCCcCC
Confidence 38999999999887644 477889999999874 457999876 699999999999865 3457899999999999985
Q ss_pred -ccceEEEEEeeEEeecc-cccceeecCC
Q 000133 2056 -SFGKVTIQIDRVVMLGA-VAGEYTLLPE 2082 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2082 (2100)
.+|++.|++.+.+..|. +.+-|.|.+.
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~ 106 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGK 106 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCc
Confidence 67999999987676665 7888999764
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-06 Score=99.73 Aligned_cols=470 Identities=13% Similarity=0.074 Sum_probs=265.3
Q ss_pred cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC-HHHHHHHHHHHHHhh-cCChHhHHHHHh-CCCh
Q 000133 196 LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLS-DHCKDARREIAG-SNGI 272 (2100)
Q Consensus 196 s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~v~~~Aa~aL~~Ls-~~~~~~~~~i~~-~g~i 272 (2100)
++|+.++.++-.-|.++..++ ...+ +..+++.+-+.+. .+.|..|.-+|.|-- .++++-++...+ +-++
T Consensus 16 spD~n~rl~aE~ql~~l~~~d---F~qf-----~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGD---FEQF-----ISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCCccccHHHHHHHhcccc---HHHH-----HHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 467777766666665665443 2232 4455555544332 578888888887743 333333333222 1112
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCC
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTK 352 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~ 352 (2100)
+ .+..+.+...+.++|. . --|++....+...++++. ++ -..
T Consensus 88 ~---------------~E~k~qvK~~al~aL~---s-------------~epr~~~~Aaql~aaIA~----~E----lp~ 128 (858)
T COG5215 88 R---------------HESKEQVKGMALRALK---S-------------PEPRFCTMAAQLLAAIAR----ME----LPN 128 (858)
T ss_pred C---------------HHHHHHHHHHHHHHhc---C-------------CccHHHHHHHHHHHHHHH----hh----Ccc
Confidence 1 1222444455555543 1 013333333333344332 11 000
Q ss_pred CCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccH-HHH-HHhhc-CCCHHHHHHHHHHHHH-hh
Q 000133 353 PSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAK-RLL-VGLIT-MATNEVQEELVRALLK-LC 428 (2100)
Q Consensus 353 ~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i-~~L-v~lL~-~~~~~v~~~A~~aL~~-L~ 428 (2100)
..- .++...++.-...+.+...+..+...+++......-...+.....+ -.+ ...++ .++..+|..|+.+|.+ +-
T Consensus 129 ~~w-p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 129 SLW-PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred ccc-hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 001 1344445555555666667777777777663322112222222221 112 22233 3467899999999988 32
Q ss_pred ccCccchHHHHhCC-cHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 429 NNEGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 429 ~~~~~~~~~i~~~g-~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
.-...+... .+.+ .++...+.-+.++.++|..|-.+|+.+..-.-..-+...+.--.....+.+.+.++++.-+|..-
T Consensus 208 fv~~nf~~E-~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 208 FVQGNFCYE-EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred HHHHhhcch-hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 211111100 0112 35667777788899999999999998864333333333333333445567788899998888877
Q ss_pred HHHHhcCChhhHHHH------------------HhCCcHHHHHHHhhc-------CChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 508 LRNLCNHSEDIRACV------------------ESADAVPALLWLLKN-------GSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i------------------~~~g~i~~Lv~lL~~-------~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
-..+|.. ++-... .-..++|.|+.+|.. .+|..-..|..+|.-.+....+..+
T Consensus 287 WsticeE--eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~ 364 (858)
T COG5215 287 WSTICEE--EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM 364 (858)
T ss_pred HHHHHHH--HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH
Confidence 6677753 111100 013378999999976 2466777788888777665556677
Q ss_pred HHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 563 SQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 563 ~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
.+.++. ++++++..|+.+..++|++..- ++.+.....+ ..++|.+...+.++.-.++..++||++.|+..-+
T Consensus 365 ~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va- 440 (858)
T COG5215 365 RPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA- 440 (858)
T ss_pred HHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH-
Confidence 776665 6678888999999999976532 2333333333 4568999999998888999999999999996533
Q ss_pred hHHHHHhcCchHHHHHhh---cCCCHHHHHHHHHHHHHHhcCCchhHH--HHHHhCCChHHHH-HHhC-----CCCHHHH
Q 000133 639 LRESSIAVKTLWSVMKLL---DVGSECILVEASRCLAAIFLSVRENRE--VAAVARDALSPLV-VLAG-----SPVLEVA 707 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL---~~~~~~v~~~aa~aL~~L~~~~~~~~~--~~~~~~~~l~~Lv-~ll~-----~~~~evr 707 (2100)
+.+.-.|-+++.+..+ -.+++.+...+++...|++.+.+...+ ..++ ...-+.++ .|++ ......|
T Consensus 441 --~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R 517 (858)
T COG5215 441 --MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLR 517 (858)
T ss_pred --HhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHH
Confidence 3343444444444332 123457888999999999877654221 1111 12223333 2222 2344578
Q ss_pred HHHHHHHHHHhcCcHH
Q 000133 708 EQATCALANLILDSEV 723 (2100)
Q Consensus 708 ~~aa~aL~~L~~~~~~ 723 (2100)
..+-.||+.|+.-.++
T Consensus 518 ~s~fsaLgtli~~~~d 533 (858)
T COG5215 518 VSLFSALGTLILICPD 533 (858)
T ss_pred HHHHHHHHHHHhhcch
Confidence 8888999998755443
|
|
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=113.79 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=93.7
Q ss_pred CCceeeeeccchhhh-h-h-CCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1979 GTLVVIIKRGNNMKQ-S-V-GNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~-~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
|+|.|+|++..+++. . . |...-++.+.+++ ....+|++++++.+|+|+|.|.|.+. +.++.|.++|++++.|++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCEEEEEEEecCCCCC
Confidence 889999999999983 3 2 3467899999988 58899999999999999999998766 678999999999999966
Q ss_pred -cccceEEEEEeeEEeecccccc-eeecCCCC-CCCCcceEEEEEecC
Q 000133 2055 -SSFGKVTIQIDRVVMLGAVAGE-YTLLPESK-SGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 2099 (2100)
+.+|++.++++++...+.+.+. +.+..++| .| .|.+++.|-+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G---~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVG---ELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCCccce---EEEEEEEeCC
Confidence 4569999999999988887643 44433333 33 4668888853
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=110.46 Aligned_cols=99 Identities=24% Similarity=0.367 Sum_probs=85.8
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceE
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKV 2060 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2060 (2100)
|+|+|.+..++... .+.-|+.+++|+ ..++|||++++.||+|||.|.|... .|.++.|.++|+++++++.+.+|++
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~-~~~~~~L~~~v~d~d~~~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKD-RLQGSTLEVSVWDKDKAKDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcC-CCcCCEEEEEEEeCCCCcCceeeeE
Confidence 78999999999888 566799999986 6889999999999999999999976 5578899999999999988899999
Q ss_pred EEEEeeEEeecc-----cccceeecCCC
Q 000133 2061 TIQIDRVVMLGA-----VAGEYTLLPES 2083 (2100)
Q Consensus 2061 ~~~~~~~~~~~~-----~~~~~~~~~~~ 2083 (2100)
+|.++++...+. .+.-|.|.+..
T Consensus 78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 78 CFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred EEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 999999876442 56789996553
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=106.88 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=109.4
Q ss_pred hhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcc
Q 000133 396 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 475 (2100)
Q Consensus 396 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~ 475 (2100)
+.+.|+++.++.++.+.++.++..++.+|.+++.+.+.....+.+.|+++.+++++.++++.++..++++|+||+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 34678999999999999999999999999999999888888888999999999999999999999999999999986667
Q ss_pred cHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000133 476 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 476 ~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
....+.+.|+++.|++++.+.+.++++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 78888999999999999999999999999999999973
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-09 Score=113.77 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=87.4
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccC----------C----CCCeE
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIP----------P----KGQKL 2042 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~ 2042 (2100)
|+|+|.+..++....|...-|+.++++.+ ..++|||++++.||+|||.|.|.+..+ | ....|
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 78999999999887777778888888754 577899999999999999999998521 2 23479
Q ss_pred EEEeecCCccCCcc-cceEEEEEeeEEee-cccccceeecCC-CCC
Q 000133 2043 HISCKNKSKMGKSS-FGKVTIQIDRVVML-GAVAGEYTLLPE-SKS 2085 (2100)
Q Consensus 2043 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 2085 (2100)
.|.||+++.|+++. +|++.|++..+-.. +...+-|.|.+. +++
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 99999999997665 69999999998876 678899999766 444
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-05 Score=102.02 Aligned_cols=470 Identities=14% Similarity=0.074 Sum_probs=302.4
Q ss_pred CCHHHHHHhHccCCHHHHHHHHH-HHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCF-LLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~-~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
|=+..|-..|.+.+...+..+.+ +++.++.+.. . ....+..++++.+. |.++|+.+--.|.+.+..+++.-
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~D-v------S~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRD-V------SYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC-c------hHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHH
Confidence 44566777788877766655554 5554444432 2 22356666777764 57899999999999887655431
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
.. .+..+..=+.+++ +-++..|+++|.++... ..++
T Consensus 104 lL-----aINtl~KDl~d~N---------p~IRaLALRtLs~Ir~~-------------------------~i~e----- 139 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSS---------PVVRALAVRTMMCIRVS-------------------------SVLE----- 139 (746)
T ss_pred HH-----HHHHHHHHcCCCC---------HHHHHHHHHHHHcCCcH-------------------------HHHH-----
Confidence 11 2455555555443 66777777777754431 0111
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhC-CCccchhhhccccHHHHHHhhcCCCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~ 422 (2100)
.+.+.+.+.+.+. +..||..|+.|+..++. +|+ .+.+.+.++.|.+++.+.++.|+.+|+.
T Consensus 140 --------------~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 140 --------------YTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAA 201 (746)
T ss_pred --------------HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHH
Confidence 1233345555443 45689999999999965 343 3344567788999999999999999999
Q ss_pred HHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHH
Q 000133 423 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502 (2100)
Q Consensus 423 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre 502 (2100)
+|..++..++..... ..+.+..|+..+..-++-.|.....+|.... +...... ...+..+...|.+.++.|.-
T Consensus 202 aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl 274 (746)
T PTZ00429 202 IVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVM 274 (746)
T ss_pred HHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHH
Confidence 999998765442222 2355677778787777878877777775533 2222211 23567788888889999999
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh---hcCCcchHH
Q 000133 503 DSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL---TSDLPESKV 578 (2100)
Q Consensus 503 ~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL---~~~~~~~~~ 578 (2100)
.|+.++.++.... ++....+. ....++|+.++ +++++++-.+...+..+.... +..+.+-...+ .++...+|.
T Consensus 275 ~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~ 351 (746)
T PTZ00429 275 GAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKL 351 (746)
T ss_pred HHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHH
Confidence 9999999998642 22221111 11336777774 567889988888887776543 33333333322 233445777
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
..++.|..++...+..+ .+..|.++..+.+.+.++.+..++++++...+.. ....+..|+.++..
T Consensus 352 ~KLeIL~~Lane~Nv~~----------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~~ 416 (746)
T PTZ00429 352 EKLRLLLKLVTPSVAPE----------ILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV-----APDCANLLLQIVDR 416 (746)
T ss_pred HHHHHHHHHcCcccHHH----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHhcC
Confidence 77777776665444322 2566777888889999999999999999764432 33567888899876
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh---CCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHH
Q 000133 659 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALANLILDSEVSEKAIAEEIILP 735 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll---~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~ 735 (2100)
+.. +..++...+.++.+..++. ..++.|+..+ .-.+++.|...+|.++.....-+. ..+.+..
T Consensus 417 ~~~-~v~e~i~vik~IlrkyP~~--------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~ 482 (746)
T PTZ00429 417 RPE-LLPQVVTAAKDIVRKYPEL--------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQR 482 (746)
T ss_pred Cch-hHHHHHHHHHHHHHHCccH--------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHH
Confidence 543 5567888888886654321 1245555433 235677777778888876532111 2345555
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
++.-...++..+|.+...+...+.-..+
T Consensus 483 ~i~~f~~E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 483 FIDTIMEHEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 5555566777799999999888887655
|
|
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-09 Score=112.03 Aligned_cols=117 Identities=20% Similarity=0.354 Sum_probs=93.3
Q ss_pred CCceeeeeccchhhh--h--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1979 GTLVVIIKRGNNMKQ--S--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
|+|.|+|++..++.. . .|.+.-|+.+.+| +...+|++++++.+|.|+|.|.|.... +.++.|.|+|+++..+|+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCC
Confidence 899999999999864 3 4567788899886 457899999999999999999998874 678999999999999965
Q ss_pred -cccceEEEEEeeEEe---ecccccceeecCCCCC---CCCcceEEEEEe
Q 000133 2055 -SSFGKVTIQIDRVVM---LGAVAGEYTLLPESKS---GPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2097 (2100)
+.+|+++|+++++.. .+....-|.|.+.+.. ...=.+.++|.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 556999999999983 4556777898766211 123346688888
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-09 Score=108.88 Aligned_cols=97 Identities=26% Similarity=0.506 Sum_probs=84.7
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCccc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSF 2057 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2057 (2100)
.|+|+|.+..++... .|.+.-|+.+++|+ .+++|+|++++.||+|||.|.|.+. +|..+.|.|+|+++++ .+.+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVR-NPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeC-CCCCCEEEEEEEECCC--CCcc
Confidence 489999999999764 34577999999986 7889999999999999999999998 5678899999999887 6789
Q ss_pred ceEEEEEeeEEeec--ccccceeec
Q 000133 2058 GKVTIQIDRVVMLG--AVAGEYTLL 2080 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~--~~~~~~~~~ 2080 (2100)
|+++|+++++...+ ...+-|.|.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecC
Confidence 99999999998754 678888884
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-09 Score=109.88 Aligned_cols=103 Identities=26% Similarity=0.424 Sum_probs=86.8
Q ss_pred ceeeeeccch---hhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc---
Q 000133 1981 LVVIIKRGNN---MKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM--- 2052 (2100)
Q Consensus 1981 ~~~~~~r~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 2052 (2100)
|.|+|.+..+ ++.. .|.+.-|+.+++|+..- +||+++++.||+|||.|.|.+..+. +.|.|.|+|++.+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~--~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPC--TVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCC--CEEEEEEEECCCcccc
Confidence 7899998887 6543 46677999999987644 6999999999999999999987433 4899999999987
Q ss_pred ----CCcccceEEEEEeeEEeecccccceeecCCCCCC
Q 000133 2053 ----GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2053 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2086 (2100)
+.+.+|++.|++..+...+.+...|.|...++.|
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 116 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSG 116 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCC
Confidence 7788899999999999999999999998654333
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.1e-09 Score=110.26 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=89.4
Q ss_pred eccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCccCC-cccceEEEE
Q 000133 1986 KRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKMGK-SSFGKVTIQ 2063 (2100)
Q Consensus 1986 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 2063 (2100)
....++...+|.+.-++.+.++. .+++|+|++++.||+|+|.|.|.+..+ ..+++|.++|++++.+|+ +.+|++++.
T Consensus 3 i~a~~L~~~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~ 81 (127)
T cd08373 3 VSLKNLPGLKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVS 81 (127)
T ss_pred EEeeCCcccCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEE
Confidence 34445555677788899999964 568999999999999999999999866 467899999999999987 556999999
Q ss_pred EeeEEeecccccceeecCCCCCCCCcceEEEEEec
Q 000133 2064 IDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2064 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
++++...+.....|.|...++++....+.+++.+.
T Consensus 82 l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~ 116 (127)
T cd08373 82 LQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQ 116 (127)
T ss_pred hhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEe
Confidence 99999999999999997664443334566666553
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-09 Score=107.98 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=86.6
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccc
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2100)
|.|.|+|.+..++... |...-++.+++|+. ...|++++. .||+|||.|.|..+. .+++|.|+++||+.++.+.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g~~-k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~lG 76 (127)
T cd08394 2 SLLCVLVKKAKLDGAP-DKFNTYVTLKVQNV-KSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTLVG 76 (127)
T ss_pred ceEEEEEEEeeCCCCC-CCCCCeEEEEECCE-EeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCceE
Confidence 5789999999999653 44456999999874 458889987 599999999999873 333499999999999999999
Q ss_pred eEEEEEeeEEeeccc--ccceeecCC--CCCCCC
Q 000133 2059 KVTIQIDRVVMLGAV--AGEYTLLPE--SKSGPS 2088 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 2088 (2100)
+|+|++.+|...... -.-|.|.|+ +++|..
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 999999999987655 566999998 777753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-09 Score=110.53 Aligned_cols=103 Identities=25% Similarity=0.417 Sum_probs=86.3
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCCeEEEEee-cC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCK-NK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2049 (2100)
.|.|+|+|.+..|+.-. .|.+.-|.++.+... ..|+|||++++.||+|||.|.|.+. +.+..|.|+|+ ++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d~ 105 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGDY 105 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeCC
Confidence 48899999999999753 455667777777433 4789999999999999999999887 78889999999 57
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+.|+++ .+|.+.|+++++-..+.+..-|.|.+.
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 777554 569999999998778889999999887
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-09 Score=111.02 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=91.0
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCC--CCeEEEEeecCCccC--C
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPK--GQKLHISCKNKSKMG--K 2054 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~ 2054 (2100)
|+|+|.+..++.. ..|.+.-++.+.+|+ ..++|+|+.++.||.|||.|.|.+..|.. .+.|.|.|++++.|+ .
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 7899999999964 456677899999985 56789999999999999999999986554 469999999999985 6
Q ss_pred cccceEEEEEeeEEee-cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2055 SSFGKVTIQIDRVVML-GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+.+|+|.|.++.+... ..-..-|+|...++.++.| =||.+.+
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~-G~l~l~~ 123 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVR-GEIGLKV 123 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCcc-EEEEEEE
Confidence 6779999999999843 3446678996555555555 3666654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-09 Score=107.59 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=81.8
Q ss_pred cCCCceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1977 LPGTLVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
-.|.|.|+|.+..++.. ..|.+.-|+++.+|+. .++|||++++.||+|+|.|.+....++.++.|.|+|+++++||++
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 35889999999999974 3345668888998754 889999999999999999999755466889999999999999766
Q ss_pred c-cceEEEEEeeEEeecccccceeecC
Q 000133 2056 S-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
. +|++.|.++-.. -+.+|+++|
T Consensus 105 d~IG~~~i~l~~~~----~~~~~~~~~ 127 (127)
T cd04032 105 DLLGTCSVVPEAGV----HEDSCQLNH 127 (127)
T ss_pred CeeEEEEEEecCCc----eeeeeecCC
Confidence 6 599999999444 337788754
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-09 Score=108.00 Aligned_cols=116 Identities=28% Similarity=0.472 Sum_probs=92.6
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc-cc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS-FG 2058 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2058 (2100)
.|+|+|....++... |.+.-+|++.+|+....+||| +++.||.|||.|.|.. .+|.-+.++|.|++++.||++. +|
T Consensus 5 ~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~-~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 5 SLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDD-LPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred EEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEec-CCCCcCEEEEEEEECCCCCCCCeEE
Confidence 489999999999864 667789999998766678997 4689999999999864 3565578999999999998876 59
Q ss_pred eEEEEEeeEEeecccccceeecCCCC--CCCCcceEEEEEec
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPESK--SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 2098 (2100)
+++|++.++...+.+..-|.|.+.++ .+..-.|.+.+.+.
T Consensus 82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999999999999999999988743 22223344555553
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-09 Score=108.36 Aligned_cols=102 Identities=24% Similarity=0.344 Sum_probs=83.3
Q ss_pred CCCceeeeeccchhhhhh-CCCcceEEEecCC----CCCccccccccCCCccccccceecc-c-cCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV-GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSF-E-IPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.... |.+.-|+++.++. ...++|||++++.||+|||+|.|.. . .......|+++|++++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 578999999999996544 3466888888874 3467899999999999999999986 2 2345679999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.|+++. +|+|.|.+.++...+...+-|.|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 998655 59999999999877777777766
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-05 Score=95.06 Aligned_cols=542 Identities=12% Similarity=0.118 Sum_probs=305.9
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhc
Q 000133 105 KSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQA 184 (2100)
Q Consensus 105 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~ 184 (2100)
.+++..+|.-++.+|..++...- .+ |.. .-..++.+||+-.+.+... ... .-+.++..|+...+.........
T Consensus 563 ~De~qkVR~itAlalsalaeaa~-Py-gie--~fDsVlkpLwkgir~hrgk--~la-afLkAigyliplmd~eya~yyTr 635 (1172)
T KOG0213|consen 563 KDEQQKVRTITALALSALAEAAT-PY-GIE--QFDSVLKPLWKGIRQHRGK--ELA-AFLKAIGYLIPLMDAEYASYYTR 635 (1172)
T ss_pred cccchhhhhHHHHHHHHHHHhcC-Cc-chH--HHHHHHHHHHHHHHHccCh--HHH-HHHHHHhhccccccHHHHHHhHH
Confidence 45666778888888877776321 11 222 2245677888887765433 222 34567777776655544444444
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcC-------CCCHHHHHHHHHHHHH---
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS-------GNEASVRAEAAGALKS--- 254 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~v~~~Aa~aL~~--- 254 (2100)
..+-.+.+=..++|.+.+.-..+++.+.+..++ .-.+......+|.++...-. .+...+...+..+-..
T Consensus 636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~ 714 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS 714 (1172)
T ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc
Confidence 556677777788999999999999988886655 44555556666666554321 1111111122111111
Q ss_pred ----------hhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 255 ----------LSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 255 ----------Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
+-..++..|+.. .+.+..++..+...+ .+..+.+.-...+.+--. ++.
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~--~etv~ri~~~lg~~d-------iderleE~lidgil~Afq-------------eqt 772 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMV--AETVSRIVGRLGAAD-------IDERLEERLIDGILYAFQ-------------EQT 772 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHH--HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHH-------------hcc
Confidence 111111122111 122334444443322 112222222222221110 000
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccc---hhhhcccc
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLS---IKLENSEA 401 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~---~~l~~~g~ 401 (2100)
.....+....|++.. -+.+ ..+.+-| .+.......|++.++. +|+.|+..++.++---..+ +.+..-|
T Consensus 773 t~d~vml~gfg~V~~---~lg~---r~kpylp-qi~stiL~rLnnksa~-vRqqaadlis~la~Vlktc~ee~~m~~lG- 843 (1172)
T KOG0213|consen 773 TEDSVMLLGFGTVVN---ALGG---RVKPYLP-QICSTILWRLNNKSAK-VRQQAADLISSLAKVLKTCGEEKLMGHLG- 843 (1172)
T ss_pred cchhhhhhhHHHHHH---HHhh---ccccchH-HHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHHHhccHHHHHHHhh-
Confidence 000111111222221 1110 0112232 5666677777776664 7999999988873211111 1122211
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc---
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS--- 476 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~--- 476 (2100)
..|.+-|...++++.-..+.+|..++..-.- ...-+ .+.+|.|..+|++....+++++...++.++...++.
T Consensus 844 -vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 844 -VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred -HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 2356677778888887777777666543210 11111 367899999999999999999999999998766653
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++-.. +--.|+.+|...+.++|..|...++.++.- |.-+.++..|++-|+......+....-++.-.+..
T Consensus 921 REWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~ 990 (1172)
T KOG0213|consen 921 REWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET 990 (1172)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh
Confidence 11111 223588889989999999999999998853 22234566666666654444343444444444433
Q ss_pred CC-CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 557 SD-TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 557 ~~-~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
.. -..+|.|+.--+.....++..++++++.+-.....-. ...+ ....|.|.+.|.+.+..-|.-|+.++..++-+
T Consensus 991 c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems--kdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 991 CGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS--KDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred cCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh--hhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 32 2566777665556666788889999887755332111 1111 12367777788899999999999999999987
Q ss_pred ChhhHHHHHhcCchHH---HHHhh----cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 000133 636 RKDLRESSIAVKTLWS---VMKLL----DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708 (2100)
Q Consensus 636 ~~~~~~~~~~~g~v~~---Lv~lL----~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~ 708 (2100)
... .|.... |++++ -+.++.++.....++..+..... . ...+...++-|.+|...||+
T Consensus 1067 ~~g-------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-~-------~~~~~Y~~QGLFHParkVR~ 1131 (1172)
T KOG0213|consen 1067 VPG-------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-P-------QAMLKYCLQGLFHPARKVRK 1131 (1172)
T ss_pred CCC-------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-h-------HHHHHHHHHhccCcHHHHHH
Confidence 432 243333 44443 46677788887777777743321 1 22356677888999998987
Q ss_pred HHHHHHHHH
Q 000133 709 QATCALANL 717 (2100)
Q Consensus 709 ~aa~aL~~L 717 (2100)
.-...+.++
T Consensus 1132 ~yw~vyn~m 1140 (1172)
T KOG0213|consen 1132 RYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHhH
Confidence 655444444
|
|
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-09 Score=109.26 Aligned_cols=101 Identities=19% Similarity=0.352 Sum_probs=82.6
Q ss_pred CCceeeeeccchhhhh-hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
|.|+|+|.+..++... .|.+.-++++.++.++ .++|||+.++.||+|||.|.|.+.....+..+++.+++++.++
T Consensus 12 ~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~ 91 (119)
T cd08685 12 RKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKS 91 (119)
T ss_pred CEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCc
Confidence 6799999999998543 3446788888887543 4579999999999999999998864445568999999999875
Q ss_pred --CcccceEEEEEeeEEeecccccceee
Q 000133 2054 --KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2054 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
++-+|++.|++++++..+.+.+-|.|
T Consensus 92 ~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 92 RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCEEEEEEEecHHHhccCccccceEeC
Confidence 45789999999999976668888876
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-09 Score=107.70 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=91.3
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
+++|+|++..++... .|.+.-++++.+|+ ..++|+++.++.||.|+|.|.|... ++.++.|.|+|+|++.||++ .
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLF-DDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEec-CCCCCEEEEEEEECCCCCCCCe
Confidence 589999999999665 45577889999964 5688999999999999999998876 45688999999999999764 5
Q ss_pred cceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEe
Q 000133 2057 FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+|++.|+++++...+.+...|.|.+. .|+.+ +++.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~--~G~~~---~~~~~ 114 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG--EGSLL---LLLTL 114 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC--CcEEE---EEEEe
Confidence 59999999999888888888888654 36654 55554
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.2e-09 Score=109.42 Aligned_cols=93 Identities=28% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCceeeeeccchhhh-hh-CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQ-SV-GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
-|.|-|+|+|+.+++. .+ |.+--|+.+++|+ ...||+||++|.||+|||.|+|.+..| +..|.+.|+||++|..+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 4899999999999865 45 6677999999985 467888999999999999999998744 67899999999999665
Q ss_pred c-cceEEEEEeeEEeeccc
Q 000133 2056 S-FGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~~~ 2073 (2100)
- +|+++|+|..++..+..
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 5 59999999888764443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00043 Score=83.87 Aligned_cols=623 Identities=14% Similarity=0.059 Sum_probs=310.9
Q ss_pred CCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCC--HHHHHHHHHHHHh-hhccchhh-HHHHhc-CC
Q 000133 22 SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS--LAVKIQAATVLGS-LCKENELR-VKVLLG-GC 96 (2100)
Q Consensus 22 ~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~--~~v~~~aa~~L~~-L~~~~~~~-~~i~~~-g~ 96 (2100)
+.++.-+..|-.+|.++.+..= ...+..+++.|.+.+ +..|+-+.-+|.+ +..+++.+ ....+. -+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF---------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~ 86 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDF---------EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG 86 (858)
T ss_pred CCCCCccccHHHHHHHhccccH---------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence 4555566667777777665221 123456666666544 3666666666665 33333322 222211 01
Q ss_pred hH---------HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc--CCCcchHHHHHHH
Q 000133 97 IP---------PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG--LKSGNVVDNLLTG 165 (2100)
Q Consensus 97 i~---------~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~--~~~~~~v~~~a~~ 165 (2100)
+| ..+.-|++..+.....|+.++..++.- -...|.-|-|++.+... ..+.......+++
T Consensus 87 ~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~----------Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~ 156 (858)
T COG5215 87 MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARM----------ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLG 156 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh----------hCccccchHHHHHHHHhccccCchHhHHHHHH
Confidence 11 234556777788888888888888872 13567788888877553 2333336677889
Q ss_pred HHHHhccCChhhHHHHHh-cCCHHHHHH-hHcc-CCHHHHHHHHHHHHH-HhhcCcchhhHHhhhchHHHHHHHh---cC
Q 000133 166 ALRNLSTSTEGFWAATVQ-AGGIDILVK-LLTL-GQSSTQAHVCFLLAC-MMEEDVSVCSRVLAADATKQLLKLL---GS 238 (2100)
Q Consensus 166 aL~nL~~~~~~~~~~i~~-~g~v~~Lv~-lL~s-~~~~v~~~a~~~L~~-L~~~~~~~~~~i~~~g~i~~Lv~lL---~~ 238 (2100)
+++++|.+.+.. ..+-. ..++-.++. .++. ++..+|..+..+|.+ +.. .+..+..++-...+++.. ..
T Consensus 157 ~~gy~ces~~Pe-~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 157 ICGYHCESEAPE-DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred HHHHHhhccCHH-HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhcc
Confidence 999999665431 11111 122223333 3333 456788888888876 321 122222233333333322 34
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHH-HHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC---CCcchh
Q 000133 239 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPA-MINATIAPSKEFMQGEYAQALQENAMCALANISG---GLSNVI 314 (2100)
Q Consensus 239 ~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~-Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~---~~~~~i 314 (2100)
++|.+++..|.++|..+-.-.-.--+...+ .++-. ....+.+++ .++.-.++.--.-+|. +....+
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~n---------d~va~qavEfWsticeEeid~~~e~ 301 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQN---------DEVAIQAVEFWSTICEEEIDGEMED 301 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcc---------hHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 577899999999998876422111111111 12222 222333332 1222222221111221 000000
Q ss_pred hhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccch
Q 000133 315 SSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSI 394 (2100)
Q Consensus 315 ~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~ 394 (2100)
.++ |+ .|. .+.| .| +.
T Consensus 302 ~~~------pe--~p~-qn~~------------------------------------------fa-------------~a 317 (858)
T COG5215 302 KYL------PE--VPA-QNHG------------------------------------------FA-------------RA 317 (858)
T ss_pred hhc------cc--Cch-hhcc------------------------------------------hH-------------HH
Confidence 000 00 000 0000 00 00
Q ss_pred hhhccccHHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 395 KLENSEAKRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 395 ~l~~~g~i~~Lv~lL~~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
. -.+.+|.|+.+|.. ++..+-..|..||.-.+....+ .|.+ ..+..+-.-+++++..-++.|+.+++
T Consensus 318 a--v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 318 A--VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred H--HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCchhhhHHHHHHHhh
Confidence 0 11345566666642 2345667777777665554322 1221 23344444567889999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---CChhHHH
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKE 544 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~ 544 (2100)
.+-.+..+....-+-..++|.+...+.++.-.+++.++|+++.++.+.+. .+-..|-++..++.+-- ..|....
T Consensus 392 Svm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ 468 (858)
T COG5215 392 SVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSI 468 (858)
T ss_pred hhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHh
Confidence 99865455555555667999999999999999999999999999875332 23335555544443332 3567778
Q ss_pred HHHHHHHHHhcCCCC----------CcHHHHHHHh------hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHH
Q 000133 545 IAAKTLNHLIHKSDT----------ATISQLTALL------TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 608 (2100)
Q Consensus 545 ~Aa~aL~~L~~~~~~----------~~i~~L~~lL------~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~ 608 (2100)
.++|..-||..|-.+ ...+.++..| ...+...|....++||.+-...+..- .+
T Consensus 469 ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-----------~~ 537 (858)
T COG5215 469 NCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-----------SD 537 (858)
T ss_pred hhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-----------HH
Confidence 888988888765321 0011111110 01111223333333333222211100 00
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~ 688 (2100)
.+..+..-...++ ..+...+.++-. +-.-+. -++.+-.-+..|..+.+..+. .+.-++
T Consensus 538 ~~a~~~~~~~~kl-~~~isv~~q~l~-----------------~eD~~~--~~elqSN~~~vl~aiir~~~~--~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTSKKL-DECISVLGQILA-----------------TEDQLL--VEELQSNYIGVLEAIIRTRRR--DIEDVE 595 (858)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhhh-----------------hHHHHH--HHHHHHHHHHHHHHHHHhcCC--CcccHH
Confidence 1111000000000 001111111111 000000 123444445555554332211 000112
Q ss_pred CCChHHHHHHhCCCCHHHH-HHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchh
Q 000133 689 RDALSPLVVLAGSPVLEVA-EQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYT 767 (2100)
Q Consensus 689 ~~~l~~Lv~ll~~~~~evr-~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~ 767 (2100)
...+..++++|.+.++.+. .....++.+|+.+-+..-+...+..+|.|.+-++..+..+-.-|..-...+.+...++..
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 2246667788877655544 556677777776544444445688999999999666665666666666666665555422
Q ss_pred HhhhhhccCcHHHHHHhhhhc
Q 000133 768 ITDCVNRAGTVLALVSFLESA 788 (2100)
Q Consensus 768 ~~~~~~~~g~l~~li~~l~s~ 788 (2100)
. .+...+..|++.+++.
T Consensus 676 ~----y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 676 I----YADVLMSSLVQCLSSE 692 (858)
T ss_pred H----HHHHHHHHHHHHhcCh
Confidence 2 2244455666666665
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=107.00 Aligned_cols=101 Identities=15% Similarity=0.285 Sum_probs=83.6
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccC----CCCCeEEEEeecCCccCC
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP----PKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 2054 (2100)
+.|+|.+..++.. ..|...-|+.+.+|+ ..++|||++++.||+|||.|.|.+... +.++.|.+.|++++.||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 4689999999964 345577899999974 567899999999999999999988653 567899999999999985
Q ss_pred -cccceEEEEEeeEE--eecccccceeecCC
Q 000133 2055 -SSFGKVTIQIDRVV--MLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 2082 (2100)
+.+|++.|+++.+. ..+....-|.|.+.
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCC
Confidence 55699999999997 45567788999653
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=108.27 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=89.4
Q ss_pred ceeeeeccchhhhh-hCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCC--------------CCCeE
Q 000133 1981 LVVIIKRGNNMKQS-VGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP--------------KGQKL 2042 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 2042 (2100)
|+|+|++..++... .|...-|.++.+++ +..++|+++.++.+|.|+|.|.|.+..+. ..+.+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 68999999999877 45567888888885 67789999999999999999999988553 56699
Q ss_pred EEEeecCCccCCcc-cceEEEEEeeEEeecccccceeecCCC
Q 000133 2043 HISCKNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2043 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.|+|++++.||+.. +|++.|+++++...|....-|.|.+.+
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 99999999997666 699999999999889999999998874
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.6e-09 Score=109.12 Aligned_cols=89 Identities=25% Similarity=0.547 Sum_probs=77.6
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
|.|+|+|.+..++... .|...-|+.+.+|+ ....|+|++++.||+|||.|.|... +|..+.+.|+|+|++.||+ +
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~-~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVK-DLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEec-CccCCEEEEEEEECCCCCCCC
Confidence 8899999999999653 55577899999975 4678999999999999999999886 5677899999999999986 5
Q ss_pred ccceEEEEEeeEEe
Q 000133 2056 SFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~ 2069 (2100)
.+|+++|+|..++.
T Consensus 93 ~lG~~~i~l~~l~~ 106 (136)
T cd08375 93 FLGRTEIRVADILK 106 (136)
T ss_pred eeEEEEEEHHHhcc
Confidence 66999999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=104.95 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=90.4
Q ss_pred ceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-ccc
Q 000133 1981 LVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-SSF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2057 (2100)
|+|+|.+..++. ...|...-|+.+..++....+|+++.++.||+|+|.|.|.+.. ..+.+.++|+|++.+|+ +.+
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEEEEEEeCCCCCCCcce
Confidence 689999999985 3456677889999976677899999999999999999998763 36899999999999955 556
Q ss_pred ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEE
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2096 (2100)
|++.|++..+...+.....|.|.+.+++...=+|.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~ 118 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVT 118 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEE
Confidence 999999999998888888999965543222223445443
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=103.50 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=88.6
Q ss_pred Cceeeeeccchhhhh-h--CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1980 TLVVIIKRGNNMKQS-V--GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
.|+|+|+...++... . |.+.-+|.+.+++....+|+|+.++.||.|+|.|.|.+. +....|++.|++++.|+++.
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~--~~~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP--RTFRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC--CCCCEEEEEEEECCCCCCCc
Confidence 478999999999875 2 456789999998766788999999999999999998764 33579999999999997755
Q ss_pred -cceEEEEEeeEEeecccccceeecCCCCCCC
Q 000133 2057 -FGKVTIQIDRVVMLGAVAGEYTLLPESKSGP 2087 (2100)
Q Consensus 2057 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2087 (2100)
+|+|.|+++.+-..+.+...|.|.+..++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 110 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE 110 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccCCCCc
Confidence 6999999999988889999999988644433
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-06 Score=105.06 Aligned_cols=254 Identities=15% Similarity=0.100 Sum_probs=195.1
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHH-hhccCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 403 RLLVGLITMA-TNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 403 ~~Lv~lL~~~-~~~v~~~A~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
+.|++-++.. ++..|..++.-|.. |+..+++.-.-+--.-.+|.|+.+|++ .+.+++..|+++|.+|+..-|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3455555544 77777666655553 555554432222222457999999986 48999999999999999888999999
Q ss_pred HHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 480 ITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++++||.|+.-|. -..-++-|++..+|..|+.. .-..+.++|++...+..|.--+-.+++.|..+..|+|..-.
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999997554 45788999999999999873 34567799999999999998888999999999999997432
Q ss_pred C-------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC----CHHHHHHHHH
Q 000133 559 T-------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSAS 627 (2100)
Q Consensus 559 ~-------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~----~~~~~~~Aa~ 627 (2100)
+ +++|-|..+|...+...-+.+.-|+..+.+-..+..-.-..+...+-|....+++.-. +..+..--..
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 2 6789999999988888889999999988886654332333456677788888877543 4456667788
Q ss_pred HHHHHhcCChhhHHHHHhcCchHHHHHhhcCC
Q 000133 628 ALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 659 (2100)
Q Consensus 628 aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 659 (2100)
.|..++.+.+.....+...++...|..+|...
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 88889998888888888889999999888543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-07 Score=110.75 Aligned_cols=245 Identities=16% Similarity=0.027 Sum_probs=185.7
Q ss_pred cCChHHHHHhhc-cCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcc
Q 000133 1271 RQAVQPLVEILN-TGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1349 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~ 1349 (2100)
+.+++.|+..|. +.+.+.+..++.+|.... ...+++.|++.|.+. ++.++..+.+.|+++
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-------------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i----- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE-------------DALDLRSVLAVLQAG-PEGLCAGIQAALGWL----- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC-------------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-----
Confidence 567999999995 455555555555554222 122489999999875 677999999999865
Q ss_pred hHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1350 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1350 ~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
....+.+.|+.+|.+.++.+|..++.++... ..+..+.|..+|++.++.||..|+.+|+.+...
T Consensus 114 -----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 114 -----GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 4556778899999999999999999887763 234567899999999999999999999999877
Q ss_pred CchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHH
Q 000133 1430 RPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV 1509 (2100)
Q Consensus 1430 ~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~ 1509 (2100)
. .++.|...+.+.+++++..++..+..+.. . ....+++.....++ ......+..++.
T Consensus 178 ~-----------a~~~L~~al~d~~~~VR~aA~~al~~lG~---~-------~A~~~l~~~~~~~g--~~~~~~l~~~la 234 (410)
T TIGR02270 178 L-----------SESTLRLYLRDSDPEVRFAALEAGLLAGS---R-------LAWGVCRRFQVLEG--GPHRQRLLVLLA 234 (410)
T ss_pred c-----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC---H-------hHHHHHHHHHhccC--ccHHHHHHHHHH
Confidence 5 78889999999999999998877644322 1 13566666555433 554444444444
Q ss_pred HhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHH
Q 000133 1510 NILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAV 1589 (2100)
Q Consensus 1510 nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al 1589 (2100)
.. .....++.|+.++.++. +|..++.+|+.+... .++++|+..+++.. +++.|.
T Consensus 235 l~------------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~ 288 (410)
T TIGR02270 235 VA------------GGPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WARLAG 288 (410)
T ss_pred hC------------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HHHHHH
Confidence 32 34467889999998755 999999999999773 78899999997543 999999
Q ss_pred HHHHHhhcCC
Q 000133 1590 KALVSIALTW 1599 (2100)
Q Consensus 1590 ~AL~~Ls~~~ 1599 (2100)
.++.++.-.+
T Consensus 289 eA~~~ItG~~ 298 (410)
T TIGR02270 289 EAFSLITGMD 298 (410)
T ss_pred HHHHHhhCCC
Confidence 9999999654
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.0001 Score=91.26 Aligned_cols=471 Identities=13% Similarity=0.105 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHhC--CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC
Q 000133 375 VQERTIEALASLYG--NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 452 (2100)
Q Consensus 375 vq~~aa~aL~~L~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 452 (2100)
||.-++.+|+.|+. .|--...+.. .+.+|..-++.........-+.+++.|+...............+-.+++=..
T Consensus 569 VR~itAlalsalaeaa~Pygie~fDs--VlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~ 646 (1172)
T KOG0213|consen 569 VRTITALALSALAEAATPYGIEQFDS--VLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFG 646 (1172)
T ss_pred hhhHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhC
Confidence 67788888888843 3433333222 2445555444444445555566777777554332223333345666777778
Q ss_pred CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-------C-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 453 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-------S-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 453 s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+++++++.....++..+|. .+...........+|.+...+-.. + .++.+.+...-..+ ..
T Consensus 647 sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv-----------G~ 714 (1172)
T KOG0213|consen 647 SPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV-----------GS 714 (1172)
T ss_pred CChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh-----------Cc
Confidence 9999999998999998884 565566666677888877765322 1 11222222111111 11
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc----CC-CC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIH----KS-DT----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~----~~-~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
...+..++.=+++..+.-++..+.+..++.. .+ +. .-+..++-.+..++.+.. --...++.+.....
T Consensus 715 ~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg--- 790 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALG--- 790 (1172)
T ss_pred hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHh---
Confidence 2234455555666666655555555544432 11 11 122222333333333221 11122222221100
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHH--HHhcCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES--SIAVKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~--~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
.+-.-.-...+..+++.|++.++.+|..|+..++.|+..-+...+. +...|+ .|...|....+++.-..++|+.+
T Consensus 791 -~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 791 -GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred -hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHH
Confidence 0000011223667778899999999999999999988642211111 222233 47788899999999888888888
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHH-HHcCcHHHHHHHHccCChhHHHHHH
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA-IAEEIILPATRVLCEGTISGKTLAA 752 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~-v~~~~v~~L~~ll~~~~~~~~~~Aa 752 (2100)
++.... ..++...-.+.+|.|..+|++.+..+++++...++.++.+.+..... --=.+.--|+++|+++..++|+.|.
T Consensus 868 I~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 868 IVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred HHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865331 22222334688999999999999999999999999998553321111 1125667788999999999999999
Q ss_pred HHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc--cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCC-Cch
Q 000133 753 AAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPK-SIT 829 (2100)
Q Consensus 753 ~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~--~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~-~l~ 829 (2100)
..+.-+.+..+.. .++..|+..|+... ..+....|+.+.+.. +.|+ +++
T Consensus 947 nTfG~IakaIGPq----------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~------------------c~pFtVLP 998 (1172)
T KOG0213|consen 947 NTFGYIAKAIGPQ----------DVLATLLNNLKVQERQNRVCTTVAIAIVAET------------------CGPFTVLP 998 (1172)
T ss_pred hhhhHHHHhcCHH----------HHHHHHHhcchHHHHHhchhhhhhhhhhhhh------------------cCchhhhH
Confidence 9999888765553 23445777777654 555555555555543 1122 233
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHh
Q 000133 830 PIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAA 899 (2100)
Q Consensus 830 ~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~ 899 (2100)
+|..--...+..+|....+.|+-+|.. .|.+=.+-=-....+++..+-+.|+..|..|+..+--++
T Consensus 999 almneYrtPe~nVQnGVLkalsf~Fey----igemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEY----IGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHH----HHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 333333345678888888888777431 111000000012235566677778888877766644333
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-06 Score=100.51 Aligned_cols=347 Identities=15% Similarity=0.108 Sum_probs=224.0
Q ss_pred CCchHHHHHHHhc-CCHHHHHHHHHHHHhhhccchhhHHH-Hh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcc
Q 000133 53 SQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKV-LL-----GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQG 125 (2100)
Q Consensus 53 ~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~~~~~~~~i-~~-----~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~ 125 (2100)
..++..++.+|+. ..+++.......+..|..+++.+... .. .+...+++.+|.+++.-....|+..|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3577889999976 45578888888999998877766543 32 25678888999988888888888888888763
Q ss_pred CCCCcccccchhccCChHHHH----HHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CH
Q 000133 126 GAKDYVGSKIFSTEGVVPVLW----EQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QS 199 (2100)
Q Consensus 126 ~~~~~~~~~~~~~~g~vp~L~----~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~ 199 (2100)
+... ......+.+. .+++.. .+...+..+..+|.+|... +.+|..+.+.++++.|+++|+.. +.
T Consensus 132 ~~~~-------~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 132 GLAK-------MEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred Cccc-------cchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccH
Confidence 2211 1122343343 444432 1233455667888888744 47888788899999999999863 45
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------HhHHHHHhCCChH
Q 000133 200 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGIP 273 (2100)
Q Consensus 200 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i~ 273 (2100)
..+.+++.+++.|+...+ ....+...+.++.|+++++....+++.+.+..+|.||...+. .....+++.|.+
T Consensus 202 Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~- 279 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL- 279 (429)
T ss_pred HHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-
Confidence 788999999988876655 555666789999999999998778899999999999997421 233455665554
Q ss_pred HHHHhhcCCCcchhhhhhhHHHHHHH-------HHHHHHhhCCCcchhhhccccc-cCCCChhhhhhhhhhhHHHHHHhc
Q 000133 274 AMINATIAPSKEFMQGEYAQALQENA-------MCALANISGGLSNVISSLGQSL-ESCSSPAQVADTLGALASALMIYD 345 (2100)
Q Consensus 274 ~Lv~ll~~~~~e~~~~~~~~~l~~~a-------~~aL~nl~~~~~~~i~~l~~~~-~~~~~~~~~~~~~gal~~ll~~l~ 345 (2100)
+++..|.... -.++++.+.- -.....++.=+.|..+-....+ =+|-.... .+|+
T Consensus 280 ~~l~~L~~rk------~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se------------~FW~ 341 (429)
T cd00256 280 KTLQSLEQRK------YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE------------KFWR 341 (429)
T ss_pred HHHHHHhcCC------CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc------------hHHH
Confidence 4555554321 1122332211 1111112221111111111111 11211000 0111
Q ss_pred cccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHH
Q 000133 346 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRAL 424 (2100)
Q Consensus 346 ~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 424 (2100)
.+...- .-+.-.+...|+++|+..++..+..-|+.-++.+ -..|..+..+.+.|+...+++++.++|++|+.+|..|+
T Consensus 342 EN~~kf-~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 342 ENADRL-NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHH-HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000000 0133467888999997555555556667777777 46688899999999999999999999999999999999
Q ss_pred HHhhcc
Q 000133 425 LKLCNN 430 (2100)
Q Consensus 425 ~~L~~~ 430 (2100)
..|..+
T Consensus 421 Qklm~~ 426 (429)
T cd00256 421 QKLMVH 426 (429)
T ss_pred HHHHHh
Confidence 887654
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-06 Score=104.85 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=217.4
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhc-----cccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLEN-----SEAKRLLVGLITMATNEVQEELVRALLKLCNN 430 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 430 (2100)
.....+++.++...+...+.+.+..-+..+ ..+|.....+.+ .+...+++.++..++.-++..++..|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 356667777777666655666666666666 344443333332 34566777889888999999999999998765
Q ss_pred CccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHH
Q 000133 431 EGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASI 507 (2100)
Q Consensus 431 ~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~a 507 (2100)
+..........-...-|...+++. +...+..++.+|..|.. .++.|..+.+.+|++.|+.+|+.. +.+.+.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 443211100001223445555543 46777788899999985 788999999999999999999764 56889999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCC-------------cHHHHHHHhhcCC
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTA-------------TISQLTALLTSDL 573 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~-------------~i~~L~~lL~~~~ 573 (2100)
+|-|+-. ++........+.++.|+++++.. ..++.+-+..+|.||...+... .+++++..|....
T Consensus 211 lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 9999985 55555666789999999999974 5678899999999998744211 2222222222211
Q ss_pred cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCChh--------hHH
Q 000133 574 PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSASALAGIFETRKD--------LRE 641 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~----~~~~~~~Aa~aL~~L~~~~~~--------~~~ 641 (2100)
. +.+|+... +..|-+.|... +.-=++.+----++|.+++.+ +..
T Consensus 290 ~-----------------~DedL~ed-------l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~ 345 (429)
T cd00256 290 Y-----------------DDEDLTDD-------LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENAD 345 (429)
T ss_pred C-----------------CcHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHH
Confidence 1 11111111 22222222111 000001111111233443322 222
Q ss_pred HHHhcC--chHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 642 SSIAVK--TLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 642 ~~~~~g--~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+-+.+ ++..|+++| .+.++.+..-||.=|+.++.+.|... ..+-+-|+=..++++|.+++++||.+|..|+..|+
T Consensus 346 kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr-~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 346 RLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGK-DVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHH-HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 233322 688999999 46677788889999999999876443 43667888888999999999999999999998876
Q ss_pred c
Q 000133 719 L 719 (2100)
Q Consensus 719 ~ 719 (2100)
.
T Consensus 425 ~ 425 (429)
T cd00256 425 V 425 (429)
T ss_pred H
Confidence 3
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=105.34 Aligned_cols=103 Identities=26% Similarity=0.531 Sum_probs=86.9
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCC--CCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPP--KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2053 (2100)
|.|.|+|++..+++.. .|...-++++..++ ..+.|+++.+ +.+|.|+|.|.|.+..++ ..+.|.|+|+++..|+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 7899999999999753 44566888888864 4678888875 899999999999998553 3579999999999997
Q ss_pred Ccc-cceEEEEEeeEEeecccccceeecCC
Q 000133 2054 KSS-FGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
++. +|++.|+++++...|...+.|.|.|.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 655 59999999999999999999999875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=104.99 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=83.0
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
-|.|+|+|.+..++... .|...-|.++.+.. ...|+|+|++++.||+|||.|.|.+..+.. +..|.+.|+++
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 47899999999999754 35566777766642 346789999999999999999998764443 45899999999
Q ss_pred CccCCcc-cceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++. +|.+.|.++.+-..+.+.+-|.|
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9998874 69999999999888888877766
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-08 Score=106.52 Aligned_cols=101 Identities=23% Similarity=0.405 Sum_probs=83.5
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++...- |.+..|+++.++. ...++|+|++++.||+|||.|.|.+..+. .+..|+|.|++++.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 77999999999997543 5577888888864 45778999999999999999999986432 35699999999998
Q ss_pred c--C-CcccceEEEEEeeEEeecccccceee
Q 000133 2052 M--G-KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2052 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
| | .+.+|++.|+++++...+...+-|.|
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ccCCCCceEEEEEEecccccccCCccceEEC
Confidence 7 4 45679999999999877788888876
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-08 Score=103.37 Aligned_cols=102 Identities=19% Similarity=0.340 Sum_probs=84.3
Q ss_pred hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-c
Q 000133 1993 QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML-G 2071 (2100)
Q Consensus 1993 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2071 (2100)
...|.+.-++.+++|+...++|+++.++.||+|+|.|.+.+. .+..+.|.|.|+++.+|+.+.+|++.|+|.++... +
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVT-DRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEec-CcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhh
Confidence 345667789999998877889999999999999999999886 45688999999999999888899999999999764 4
Q ss_pred ccccceeecCCCCCCCCcceEEEEEecC
Q 000133 2072 AVAGEYTLLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
...+-|.|.+ .+.|. |.++++|-+
T Consensus 87 ~~~~w~~L~~-~~~G~---i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG-NGQGR---IRISALWKP 110 (111)
T ss_pred ccceeEECCC-CCCCE---EEEEEEEec
Confidence 5577888854 44555 558899864
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-08 Score=103.94 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=86.4
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS- 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2055 (2100)
|+|.|+|.+..+++.. +|...-++.+.+++....+|++++++.+|+|+|.|.|... +..+.|.|+|++++.||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT--SPNQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec--CCCCEEEEEEEECCCCCCCC
Confidence 7899999999988774 4556688999997667788999999999999999887655 3368999999999999886
Q ss_pred ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.+|++++.+.+++.. ...|.|.|..++
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 569999999998765 789999995555
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-08 Score=104.23 Aligned_cols=100 Identities=18% Similarity=0.336 Sum_probs=85.3
Q ss_pred ceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-cc
Q 000133 1981 LVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2057 (2100)
|+|+|++..++... .|.+.-|+.+.+|+ ...+|+++.++.||+|+|.|.|.+.. +.++.|.|+|++++.||+. .+
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELME-GADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCC-CCCCEEEEEEEECCCCCCCcEe
Confidence 68999999998654 34466889999975 45789999999999999999999874 3478999999999999875 56
Q ss_pred ceEEEEEeeEEeecccccceeecCC
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|++.+++..+...+...+-|.|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~ 104 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPD 104 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCC
Confidence 9999999999888888999999875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.9e-08 Score=101.97 Aligned_cols=101 Identities=18% Similarity=0.315 Sum_probs=83.3
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC---c
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK---S 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 2055 (2100)
|.|+|.+..++.. .+|.+.-|+.+.+++....+|+|++++.||+|||.|.|.+. + ++.|.|+|+++++||+ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~-~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--P-SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--C-CCEEEEEEEECCCCCCCCCc
Confidence 6789999888864 35667789999997677889999999999999999999985 2 8899999999999986 4
Q ss_pred ccceEEEEEeeEEeeccc-ccceeecCCCC
Q 000133 2056 SFGKVTIQIDRVVMLGAV-AGEYTLLPESK 2084 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2084 (2100)
.+|++.|++++++..+.. ...|.|.+.++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 689999999999876554 55777754444
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-08 Score=105.30 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=91.8
Q ss_pred CCCceeeeeccchhhhhh------------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMKQSV------------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
.|.|.|+|++..+++..- |....++.+.+|+....+|++.+++.+|.|||.|++.+. .+..+.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEEEEE
Confidence 689999999999996432 356789999998777789999999999999999998874 46799999
Q ss_pred eecCCccCCc-ccceEEEEEeeEEe--ecccccceeecCCCCCCCCcceEEEEEec
Q 000133 2046 CKNKSKMGKS-SFGKVTIQIDRVVM--LGAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2046 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
|++++.++++ .+|++.|+++.+.. .+.....|.|.+ .|. +.+++.|.
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~---~G~---l~l~~~~~ 129 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP---QGK---LHVKIELK 129 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC---CcE---EEEEEEEe
Confidence 9999998774 56999999999988 566777888863 454 44777774
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-08 Score=102.44 Aligned_cols=92 Identities=24% Similarity=0.457 Sum_probs=75.4
Q ss_pred CCceeeeeccchhhh--hh-CCCcceEEEecC-C-CCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQ--SV-GNPSVYCKLTLG-N-TPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2050 (2100)
|+|+|+|.+..++.. .. |...-|+.+.++ + ....+|+|++++.||+|+|.|.+.+. ++ ..+.|.++|++++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVT-PDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeC-chhccCCCEEEEEEEeCC
Confidence 899999999999864 33 566788888774 2 35679999999999999999997765 44 4579999999999
Q ss_pred ccCC-cccceEEEEEeeEEeec
Q 000133 2051 KMGK-SSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2051 ~~~~-~~~~~~~~~~~~~~~~~ 2071 (2100)
.||+ +.+|++.|.+.++...+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred CCCCCCcceEEEEEHHHHhcCC
Confidence 9986 56699999999987543
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-05 Score=100.08 Aligned_cols=408 Identities=15% Similarity=0.125 Sum_probs=248.4
Q ss_pred CHHHHHHHHHHHHHH-hhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHH
Q 000133 198 QSSTQAHVCFLLACM-MEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMI 276 (2100)
Q Consensus 198 ~~~v~~~a~~~L~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv 276 (2100)
|+..|..++.=|..+ .+..++....|--...+|.|+++|+..++.++...|+.+|.+|+.-.|.....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 555555554444333 3555555555555677999999999988889999999999999988888888999999999999
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
.-|..-. .-++.|+++.||-.|+...+.
T Consensus 261 ~kL~~Ie--------yiDvAEQ~LqALE~iSR~H~~-------------------------------------------- 288 (1051)
T KOG0168|consen 261 EKLLTIE--------YIDVAEQSLQALEKISRRHPK-------------------------------------------- 288 (1051)
T ss_pred Hhhhhhh--------hhHHHHHHHHHHHHHHhhccH--------------------------------------------
Confidence 8886532 246778888888777753221
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-ch
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LW 435 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~ 435 (2100)
.+-++|++-..+..++-=+..+|+.|+....|.|..=.. --
T Consensus 289 --------------------------------------AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f 330 (1051)
T KOG0168|consen 289 --------------------------------------AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF 330 (1051)
T ss_pred --------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 112234444444444433456788888888888865322 12
Q ss_pred HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccC---CcccHHHHHhcCChHHHHHhccCC----CHHHHHHHHHHH
Q 000133 436 RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASIL 508 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~---~~~~~~~i~~~g~i~~Lv~lL~~~----~~~vre~A~~aL 508 (2100)
..+. .++|.|..+|...+....+.++.+++.++.. .++.-+.+...|-|....+|+.-. +..+.......|
T Consensus 331 ~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 331 HFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred hHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 2333 6899999999999999999999888888643 455677788889898888888654 334455667788
Q ss_pred HHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh--------------hHHHHHHHHHHHHhcCCCC---------------
Q 000133 509 RNLCNHSEDIRACVESADAVPALLWLLKNGSA--------------NGKEIAAKTLNHLIHKSDT--------------- 559 (2100)
Q Consensus 509 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------------~~~~~Aa~aL~~L~~~~~~--------------- 559 (2100)
..+|..++.......+.+....|-.+|...+. .-.-.....+..|..-.+.
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~ 488 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV 488 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence 88888878888888888888888888865221 1000000000000000000
Q ss_pred ----Cc-----------------HHHHHHHhhcCCcchHHHHHHHHH---HHHhccCchhHHHHhhhccchHHHHHHHhc
Q 000133 560 ----AT-----------------ISQLTALLTSDLPESKVYVLDALK---SMLSVVSFSDILREGSAANDAVETMIKILS 615 (2100)
Q Consensus 560 ----~~-----------------i~~L~~lL~~~~~~~~~~a~~aL~---~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 615 (2100)
+. ...++.-.+++....+.. .+-+. .-..+.+.+++.+.-+ ...+|.|++...
T Consensus 489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~-~dkl~~~~r~~~l~nqpel~q~F~--~~llpVLveVYs 565 (1051)
T KOG0168|consen 489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQ-QDKLNGSAREGLLKNQPELLQSFG--KDLLPVLVEVYS 565 (1051)
T ss_pred cccccccccCccccccccccchhhhhhhhhhccCcccchhh-hhhcCCchhhhhhhcCHHHHHHHH--HHHHHHHHHHHh
Confidence 00 001111111111100000 00000 0111234455544433 334889999775
Q ss_pred -CCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcC-chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCCh
Q 000133 616 -STKEETQAKSASALAGIFETR-KDLRESSIAVK-TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDAL 692 (2100)
Q Consensus 616 -s~~~~~~~~Aa~aL~~L~~~~-~~~~~~~~~~g-~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l 692 (2100)
+.++.+|+.+..+|..+.... .+....+.... +-..+--.|.+.+..+...|++...-|+...++.--..|...|.+
T Consensus 566 SsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~ 645 (1051)
T KOG0168|consen 566 SSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVF 645 (1051)
T ss_pred ccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHH
Confidence 569999999999999986543 33444444333 333444445666666666666666666555444433335555555
Q ss_pred HHHHHHhC
Q 000133 693 SPLVVLAG 700 (2100)
Q Consensus 693 ~~Lv~ll~ 700 (2100)
...-+|..
T Consensus 646 ~~v~~L~~ 653 (1051)
T KOG0168|consen 646 HAVKQLSV 653 (1051)
T ss_pred HHHHHHhc
Confidence 55555544
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-08 Score=106.84 Aligned_cols=92 Identities=28% Similarity=0.490 Sum_probs=78.4
Q ss_pred CCceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-cc
Q 000133 1979 GTLVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-SS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2056 (2100)
|.|+|+|.|..++.. ..+.+.-|+.+.+|+ .+.+|+|++++.||+|+|.|+|.+..| .+.+.++|+++++||+ +.
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCCE
Confidence 889999999999943 335667889999975 578999999999999999999998744 8899999999999987 55
Q ss_pred cceEEEEEeeEEeeccc
Q 000133 2057 FGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~ 2073 (2100)
+|++.+.++.++.....
T Consensus 79 iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 79 MGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEEEEHHHhhhhhhh
Confidence 69999999998875443
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-05 Score=98.57 Aligned_cols=377 Identities=15% Similarity=0.101 Sum_probs=247.4
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhCC-CccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
.+.+-+.|.+.....++.....-...++.+ +.....+. ..+..++.-+..+++.+|+....||..+........
T Consensus 57 ~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~--~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~--- 131 (569)
T KOG1242|consen 57 KPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPI--SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS--- 131 (569)
T ss_pred HHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchh--HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---
Confidence 344444555554555666666666666322 22222221 235567777888899999999999998776543321
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChh
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSED 517 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~ 517 (2100)
.....+.+.++++..+...+..+++.+..+.. ......+.+.+.+..|-....+.. ...|+.+.-+....+.+...
T Consensus 132 -~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 132 -GEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred -HHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 11345778888998888899999999999985 345566777788888888888774 44444444444444432221
Q ss_pred hHHHHHhCCcHHHHHHHhh---cCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 518 IRACVESADAVPALLWLLK---NGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 518 ~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
. .+...++.+-.++. +..+.+++.|..+...+-..-.+ ..+|+++.-+.+..+..+.++++.+|.++..
T Consensus 209 ~----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 P----FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred C----CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 1 13344454445544 45667887777777665543333 4566666667777889999999999999888
Q ss_pred cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~a 670 (2100)
++..- ...-...+|.+.+.|.+.++++|+.+..+|-+++..-+ +-+ -...+|.|++.+.+++.. ..++...
T Consensus 285 ap~qL----s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d---I~~~ip~Lld~l~dp~~~-~~e~~~~ 355 (569)
T KOG1242|consen 285 APKQL----SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD---IQKIIPTLLDALADPSCY-TPECLDS 355 (569)
T ss_pred chHHH----HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH---HHHHHHHHHHHhcCcccc-hHHHHHh
Confidence 77432 23335569999999999999999999999999987522 211 124688999999887732 2333333
Q ss_pred HHHHhcCCchhHHHHHHhCCChHHHHHH----hCCCCHHHHHHHHHHHHHHh--cCcHHHHHHHHcCcHHHHHHHHccCC
Q 000133 671 LAAIFLSVRENREVAAVARDALSPLVVL----AGSPVLEVAEQATCALANLI--LDSEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 671 L~~L~~~~~~~~~~~~~~~~~l~~Lv~l----l~~~~~evr~~aa~aL~~L~--~~~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
|+.-.. +..++...+..++.+ +...+.+++..++...+|++ ...+......-+.++|.|-..+....
T Consensus 356 L~~ttF-------V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~ 428 (569)
T KOG1242|consen 356 LGATTF-------VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAV 428 (569)
T ss_pred hcceee-------eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCC
Confidence 332210 012333444444444 44567778899999999998 32344444455788888888888888
Q ss_pred hhHHHHHHHHHHHHHhcCcc
Q 000133 745 ISGKTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 745 ~~~~~~Aa~aL~~l~~~~~~ 764 (2100)
+++|.-+++||..+.+....
T Consensus 429 PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 429 PEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 89999999999888875544
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0061 Score=78.41 Aligned_cols=506 Identities=14% Similarity=0.141 Sum_probs=311.7
Q ss_pred HHHHHhcCCHHHHHHhHcc-----------CCH--HHHHHHHHHHHHHhhcCcchhhHHhh-hchHHHHHHHhcCCCCHH
Q 000133 178 WAATVQAGGIDILVKLLTL-----------GQS--STQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEAS 243 (2100)
Q Consensus 178 ~~~i~~~g~v~~Lv~lL~s-----------~~~--~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~ 243 (2100)
...++..||++.|..+++. .++ .+..+.+.+++- +...+..+..+.+ ...|.-|++++.-++-+.
T Consensus 1420 aEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SV-aaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr 1498 (2235)
T KOG1789|consen 1420 AEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSV-AAQFEACRQRLMEMPSIIGDLTRLLQFSNLPR 1498 (2235)
T ss_pred HHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHhccccH
Confidence 3557888999999998863 233 344677777743 3445557777765 466777888877655456
Q ss_pred HHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCC-----------cchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 244 VRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS-----------KEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 244 v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~-----------~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
+...|+.+++.++- ++..+-.+.++|.+=.|+.+|..-+ .+..+......+...++.+|..+.+-
T Consensus 1499 ~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~--- 1574 (2235)
T KOG1789|consen 1499 LSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGF--- 1574 (2235)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcc---
Confidence 77888889999987 7888899999999988887775432 11122223344555666777665541
Q ss_pred hhhhccccccCCCChhhhhhhhhhh------------------------------------HHHHHHhcc------cc--
Q 000133 313 VISSLGQSLESCSSPAQVADTLGAL------------------------------------ASALMIYDS------KA-- 348 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal------------------------------------~~ll~~l~~------~~-- 348 (2100)
+++....|.+........|.+ +-++.+++. +.
T Consensus 1575 ----~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~ 1650 (2235)
T KOG1789|consen 1575 ----RADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGP 1650 (2235)
T ss_pred ----ccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCC
Confidence 111111222222211111111 111111110 00
Q ss_pred -------------CCCC------------------CCCchhhHHHHHhhcCC----------------------------
Q 000133 349 -------------ESTK------------------PSDPLIVEQTLVNQFKP---------------------------- 369 (2100)
Q Consensus 349 -------------~~~~------------------~~~~~~i~~~Lv~lL~~---------------------------- 369 (2100)
-.+| .-.|..+-..|+...++
T Consensus 1651 ~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE 1730 (2235)
T KOG1789|consen 1651 TDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSE 1730 (2235)
T ss_pred chhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchh
Confidence 0000 01222222222222111
Q ss_pred --C---CChHHHHHHHHHHHHH-hCCCccchhhh----ccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 370 --R---LPFLVQERTIEALASL-YGNPLLSIKLE----NSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 370 --~---~~~~vq~~aa~aL~~L-~~~~~~~~~l~----~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
+ +.+.--+.+..+|.|+ ..+|+....+. -.|-.+.++..+. .+++.++.-|...+..+..+ .+.-..+
T Consensus 1731 ~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~ 1809 (2235)
T KOG1789|consen 1731 AHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDL 1809 (2235)
T ss_pred hhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHH
Confidence 0 1112234577888888 67786644333 2355667777776 45788999999988877776 4455677
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCC--
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHS-- 515 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~-- 515 (2100)
...+.+..|+.+|.+ -+..++.+...|..|++ +++..++..++||+.-+..++... ++++|.+++..|+.|..+.
T Consensus 1810 a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 788888888888865 47888899999999996 788888899999998888877654 7899999999999998641
Q ss_pred -hhhHH-----------HHHhCCcHHHHHHHhhcC--------ChhHHHHHHHHHHHHhcCC------C-----------
Q 000133 516 -EDIRA-----------CVESADAVPALLWLLKNG--------SANGKEIAAKTLNHLIHKS------D----------- 558 (2100)
Q Consensus 516 -~~~~~-----------~i~~~g~i~~Lv~lL~~~--------~~~~~~~Aa~aL~~L~~~~------~----------- 558 (2100)
|..+. .+.+. +-++.|..++.. ++..+......+..|...- +
T Consensus 1888 GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs 1966 (2235)
T KOG1789|consen 1888 GPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS 1966 (2235)
T ss_pred CCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh
Confidence 11111 11111 225566666542 2334444455555554310 0
Q ss_pred -----------------------C------------CcHHHHHHHhhcCCcchHHH--HHHHHHHHHhccCchhHHHHhh
Q 000133 559 -----------------------T------------ATISQLTALLTSDLPESKVY--VLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 559 -----------------------~------------~~i~~L~~lL~~~~~~~~~~--a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
| +.+++++.++...+++...- -..|+-.+.. -++. ....+
T Consensus 1967 Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r--~hP~-LADqi 2043 (2235)
T KOG1789|consen 1967 AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVR--HHPN-LADQL 2043 (2235)
T ss_pred cchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH--hCcc-hhhhC
Confidence 0 33555666676666653222 1122222222 2222 23356
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
..-|-+|.++..+...+..+-..|.+.|..|+.+ .-..+++.....+.+++.++...- ...--|+.+|..+.....+.
T Consensus 2044 p~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~e 2121 (2235)
T KOG1789|consen 2044 PSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGE 2121 (2235)
T ss_pred CCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHH
Confidence 6778899999988776666668899999999986 566777888888888888886543 34557888888887755544
Q ss_pred HHHHHHhCCChHHHHHHhCC
Q 000133 682 REVAAVARDALSPLVVLAGS 701 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~ 701 (2100)
--......|.+|.|++++..
T Consensus 2122 LVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2122 LVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHhccCcHHHHHHHhcc
Confidence 44446789999999999975
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-08 Score=101.34 Aligned_cols=99 Identities=17% Similarity=0.408 Sum_probs=84.0
Q ss_pred ceeeeeccchhhhh---hCCCcceEEEecCCCCCccccccccCCCccc-cccceeccccCC-CCCeEEEEeecCCccCCc
Q 000133 1981 LVVIIKRGNNMKQS---VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEW-EESFAWSFEIPP-KGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 2055 (2100)
|+|+|.+..++... .|...-|+.+.+|+ ..++|+|++++.||+| +|.|+|.+..+. ..+.|.|+|++++.||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 68999999998642 34566899999987 7888999999999999 999999886544 357999999999999886
Q ss_pred -ccceEEEEEeeEEe---ecccccceeec
Q 000133 2056 -SFGKVTIQIDRVVM---LGAVAGEYTLL 2080 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~---~~~~~~~~~~~ 2080 (2100)
.+|++.+.++.+.. .+.+++-|.|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 57999999999999 56799999983
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00012 Score=92.11 Aligned_cols=356 Identities=14% Similarity=0.168 Sum_probs=224.9
Q ss_pred CChHHHHHhhcc-CChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcc
Q 000133 1272 QAVQPLVEILNT-GLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTR 1349 (2100)
Q Consensus 1272 ~~i~~Lv~lL~~-~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~ 1349 (2100)
..|+.|++=+.+ .-.+-|+.|+.+|-.++ ...|.. |.+.++++|+..|... .|.+....++..+.+++++.+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~s--rkYR~~----Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFS--RKYREE----VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHH--HHHHHH----HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 346777765543 34567888998888877 122222 4667899999999654 778899999999999988764
Q ss_pred h-------H-----------HHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc--cHHHHH-HHHhcCCHHHHHHhh
Q 000133 1350 I-------R-----------STVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAE-LVAAHGAVIPLVGLL 1408 (2100)
Q Consensus 1350 ~-------r-----------~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~~~~~~-~~~~~g~i~~L~~lL 1408 (2100)
. + .-+-..+.|..|+..+...|-.+|..++.-|..+.. ..+.+. .+..+-.|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 1 122345678888888888999999999999999983 334444 345567899999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHH
Q 000133 1409 YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLF 1488 (2100)
Q Consensus 1409 ~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll 1488 (2100)
.+.-..+|..++-.|..++++++.....++-.++.+.+..++..+. .
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG-------------------g-------------- 222 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG-------------------G-------------- 222 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC-------------------C--------------
Confidence 9999999999999999999998544444333444444444433221 0
Q ss_pred HHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC---CCCHHHHHHHHHHHHHhhcccccccccc
Q 000133 1489 LLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD---SPAPAVQQLAAELLSHLLLEEQLQKDPV 1565 (2100)
Q Consensus 1489 ~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~---~~~~~vq~~a~~aL~~l~~~~~~~~~l~ 1565 (2100)
.+|..+..+|+..|.||..+..+.+.+ +.+.++++.|..+|. .++.++-.-...-..++-
T Consensus 223 ------~dGgIVveDCL~ll~NLLK~N~SNQ~~-FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~---------- 285 (970)
T KOG0946|consen 223 ------LDGGIVVEDCLILLNNLLKNNISNQNF-FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI---------- 285 (970)
T ss_pred ------CCCcchHHHHHHHHHHHHhhCcchhhH-HhccccHHHHHhhcCcccccCcccccccHHHHHHHH----------
Confidence 055678888999999999998888776 688899999997775 222211000000000000
Q ss_pred ccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccch-
Q 000133 1566 TQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE- 1644 (2100)
Q Consensus 1566 ~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~- 1644 (2100)
-++..+-.+...+++.--.++..+ .|...+++..|..++.+ ++++..+.-.+..+.++.+++...
T Consensus 286 --~~Lqivr~lVsP~Nt~~~~~q~qk----------~l~ss~ll~~Lc~il~~--~~vp~dIltesiitvAevVRgn~~n 351 (970)
T KOG0946|consen 286 --EALQIVRSLVSPGNTSSITHQNQK----------ALVSSHLLDVLCTILMH--PGVPADILTESIITVAEVVRGNARN 351 (970)
T ss_pred --HHHHHHHHhcCCCCcHHHHHHHHH----------HHHHcchHHHHHHHHcC--CCCcHhHHHHHHHHHHHHHHhchHH
Confidence 011111111222333222222211 26677788999999987 337777777688888888876543
Q ss_pred ---hh------hcccHHHHH----HHhh-cCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHHHHhc
Q 000133 1645 ---FY------LEVPVAVLV----RLLR-SGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1702 (2100)
Q Consensus 1645 ---~~------~~~~v~~Lv----~ll~-~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~s 1702 (2100)
|. .+.+.+.++ .+.. ......|++.+.++-.....+..... ..+..|++.-.+
T Consensus 352 Q~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~-----~~l~tllp~~~n 418 (970)
T KOG0946|consen 352 QDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR-----KFLKTLLPSSTN 418 (970)
T ss_pred HHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH-----HHHHHHhhhhcc
Confidence 11 111233332 3333 33357888888888766655543322 334555555433
|
|
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-08 Score=99.64 Aligned_cols=90 Identities=14% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCceeeeeccchhhhh--h---C-CCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--V---G-NPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
|+|.|+|.+..++... + | ...-|+.+.+|+ ...+|+|++++.||+|+|.|.|.+.....++.|.++|++++.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 8999999999999753 1 1 245688888874 4568999999999999999999887555566999999999999
Q ss_pred CCcc-cceEEEEEeeEEe
Q 000133 2053 GKSS-FGKVTIQIDRVVM 2069 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~ 2069 (2100)
|++. +|++.|.+.++..
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 7755 5999999988765
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-08 Score=101.82 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=79.2
Q ss_pred CCCceeeeeccchhhhhh---CCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSV---GNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++...- |...-|.++.+.. ...++|||++++.||+|||.|.|.+.... .+..|.+.|+++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 367999999999996543 4566777777743 34578999999999999999999876433 345899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++ .+|.+.|++.++-..+....-|.|
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999876 569999999998655554444544
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-08 Score=102.56 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++... .|...-|+++.+..+ ..|+|||+.++.||+|||.|.|.+..... +..|++.|+++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 36799999999999654 266778888877533 37789999999999999999998653333 34999999999
Q ss_pred CccCCc-ccceEEEEEeeEE
Q 000133 2050 SKMGKS-SFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~ 2068 (2100)
+.|+++ .+|.|.|++.++-
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred CCCcCcceEEEEEEEcCCcc
Confidence 998665 5599999998873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-08 Score=102.14 Aligned_cols=102 Identities=22% Similarity=0.365 Sum_probs=82.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEec--CCCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++... .|...-++++.+ ++...++|+|++++.+|+|+|.|.|.+...- .++.|.|+|++++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 37899999999999643 444667888887 4466789999999999999999999765222 356999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceee
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++ .+|++.|++.++...+....-|.|
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEEC
Confidence 866 569999999999877777766666
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-08 Score=101.78 Aligned_cols=102 Identities=24% Similarity=0.354 Sum_probs=78.5
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEec--CCCCCccccccccCCCccccccceec-cccC-CCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 2052 (2100)
+.|+|+|.+..++...- |...-+.++-+ ++...++|||++. .||+|||+|.|. +... ..+..|++.|++++.|
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 56899999999997654 33444444333 3467889999987 999999999997 4422 2455899999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
|++. +|++.|++.++-..+....-|.|.|
T Consensus 95 ~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8665 5999999999977777777777754
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=101.71 Aligned_cols=102 Identities=23% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|....|+++.+..+ ..++|+|++++.+|+|||.|.|.+..+. .+..|.|+|+++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 58899999999999753 345667787766422 4578999999999999999998876332 256899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.||++ .+|++.|+++++...+...+-|.|
T Consensus 93 ~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999876 459999999999777777766654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=101.38 Aligned_cols=106 Identities=22% Similarity=0.424 Sum_probs=83.8
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCC------CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT------PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|+|+|.+..++... .|.+.-++++.+++. ...+|++++++.||+|||.|.|.+ ++.++.|.++|++++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~--~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV--NPREHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE--cCCCCEEEEEEEECCC
Confidence 489999999998654 455678888888754 246899999999999999998875 4557899999999999
Q ss_pred cCCc-ccceEEEEEeeEEeeccc------ccceeecCCCCCCC
Q 000133 2052 MGKS-SFGKVTIQIDRVVMLGAV------AGEYTLLPESKSGP 2087 (2100)
Q Consensus 2052 ~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 2087 (2100)
||++ .+|++.|+++.+...+.. ...|.|.+-++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSR 121 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCc
Confidence 9865 559999999999986553 36788875443443
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-06 Score=104.61 Aligned_cols=244 Identities=19% Similarity=0.058 Sum_probs=183.4
Q ss_pred cCcHHHHHHHHh-cCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhH
Q 000133 1230 FAAVSQLVAVLR-LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1308 (2100)
Q Consensus 1230 ~~al~~Li~~L~-~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~ 1308 (2100)
+.+++.|+..|. +++...+..++.+|... ....++..|+..|.+.++.++..++.+|+.+.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 568999999996 45556666666555432 11224899999999988889999999999876
Q ss_pred HHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhccc
Q 000133 1309 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1388 (2100)
Q Consensus 1309 ~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~ 1388 (2100)
...+.+.|+.+|.+. +..++..+..++... .....+.++.+|++.++.++..|+++|..+.
T Consensus 115 -----~~~a~~~L~~~L~~~-~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-- 175 (410)
T TIGR02270 115 -----GRQAEPWLEPLLAAS-EPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP-- 175 (410)
T ss_pred -----chHHHHHHHHHhcCC-ChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc--
Confidence 456788899999764 677888887777652 2234678999999999999999999999986
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000133 1389 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1468 (2100)
Q Consensus 1389 ~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~L 1468 (2100)
...+++.|...+.+.++.||+.|+.+|..++... ++..+..+...........++.+ +
T Consensus 176 --------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~-----------A~~~l~~~~~~~g~~~~~~l~~~---l 233 (410)
T TIGR02270 176 --------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL-----------AWGVCRRFQVLEGGPHRQRLLVL---L 233 (410)
T ss_pred --------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh-----------HHHHHHHHHhccCccHHHHHHHH---H
Confidence 3356788999999999999999999999997654 56677764544333333333322 2
Q ss_pred HhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHH
Q 000133 1469 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1548 (2100)
Q Consensus 1469 s~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~ 1548 (2100)
+..... ..+..|..++.. +.++..+..+|+.+ .....+++|+..+.+.. ++..|.
T Consensus 234 al~~~~-------~a~~~L~~ll~d----~~vr~~a~~AlG~l------------g~p~av~~L~~~l~d~~--~aR~A~ 288 (410)
T TIGR02270 234 AVAGGP-------DAQAWLRELLQA----AATRREALRAVGLV------------GDVEAAPWCLEAMREPP--WARLAG 288 (410)
T ss_pred HhCCch-------hHHHHHHHHhcC----hhhHHHHHHHHHHc------------CCcchHHHHHHHhcCcH--HHHHHH
Confidence 222221 368888888874 34888899999884 77789999999997655 999999
Q ss_pred HHHHHhhcc
Q 000133 1549 ELLSHLLLE 1557 (2100)
Q Consensus 1549 ~aL~~l~~~ 1557 (2100)
+++..|+.-
T Consensus 289 eA~~~ItG~ 297 (410)
T TIGR02270 289 EAFSLITGM 297 (410)
T ss_pred HHHHHhhCC
Confidence 999999874
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-08 Score=98.51 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=79.9
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCCccCC-cc
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMGK-SS 2056 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 2056 (2100)
|.|+|.+..++. .|...-++++++|+ ..++|++++++.||.|+|.|.|.+..|+ .++.|.|.|+++++||+ +.
T Consensus 6 l~V~v~~a~~L~--~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 6 VRVRVIEARQLV--GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEcccCC--CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 688999999998 56677899999985 5788999999999999999999987666 35799999999999987 55
Q ss_pred cceEEEEEeeEEee---cccccceee
Q 000133 2057 FGKVTIQIDRVVML---GAVAGEYTL 2079 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~---~~~~~~~~~ 2079 (2100)
+|+++|.+..+... +.+..-|.|
T Consensus 83 iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 83 IGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cEEEEECCccccCCCCCcceEEEEEe
Confidence 69999999998764 334445555
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.7e-08 Score=100.75 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=80.3
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccc--cCCCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFE--IPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 2052 (2100)
+.|+|+|++..++... .|...-++.+.+. ++..++|+|++++.||+|||.|.|... .....+.|.++|++++.|
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5789999999999653 4556678888773 566789999999999999999998632 113456899999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeec
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
|++. +|++.|.+.++-..+..+.-|.|.
T Consensus 96 ~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 8765 699999999987766655555553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-05 Score=95.96 Aligned_cols=370 Identities=18% Similarity=0.185 Sum_probs=251.3
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 227 g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
..|+.|+.-+.++.-.+-|+.|+..|..+++ ..|.. +.+-|+++++..|+.. ..+++...++..++.++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~-Vga~Gmk~li~vL~~D-------~~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREE-VGAQGMKPLIQVLQRD-------YMDPEIIKYALDTLLIL 90 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHH-HHHcccHHHHHHHhhc-------cCCHHHHHHHHHHHHHH
Confidence 3477777777776667889999999999987 45444 4556899999999653 45688899999999988
Q ss_pred hCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 386 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L 386 (2100)
....+. | ..+.+ + +.+...=.+-++.
T Consensus 91 ~~~dd~-----------~---~v~dd-----------------------s-------------~qsdd~g~~iae~---- 116 (970)
T KOG0946|consen 91 TSHDDS-----------P---EVMDD-----------------------S-------------TQSDDLGLWIAEQ---- 116 (970)
T ss_pred HhcCcc-----------h---hhccc-----------------------c-------------hhhhHHHHHHHHH----
Confidence 764220 0 00000 0 0000001111111
Q ss_pred hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhC-CcHHHHHHhhCCCCHHHHHHHHH
Q 000133 387 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGR-EGIQLLISLLGLSSEQQQECSVA 464 (2100)
Q Consensus 387 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~-g~i~~Lv~lL~s~~~~v~~~A~~ 464 (2100)
.+...+-+..++..+...|..||..++..|.++-...+ ..+.++... -||..|+.+|.+..+.+|..+..
T Consensus 117 --------fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL 188 (970)
T KOG0946|consen 117 --------FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL 188 (970)
T ss_pred --------HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence 23345667788888888899999999999999766554 455666544 57999999999999999999999
Q ss_pred HHHHhccCCcccHHHHHhcCChHHHHHhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---
Q 000133 465 LLCLLSNENDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--- 537 (2100)
Q Consensus 465 aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--- 537 (2100)
.|+.|+++++..+..+.=.++...|..+++.. ..-+.+.|...|.||-..+..++..|.+.+-+|.|..+|..
T Consensus 189 lL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~ 268 (970)
T KOG0946|consen 189 LLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEF 268 (970)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccc
Confidence 99999998888888888888999999999754 23578899999999999888999999999999999988864
Q ss_pred CC-----hhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH
Q 000133 538 GS-----ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 612 (2100)
Q Consensus 538 ~~-----~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~ 612 (2100)
++ |..++.+. ....| +++..+-+...... ...-.++.+...+++..|..
T Consensus 269 ~d~Ev~~W~~Qrv~N-v~~~L----------qivr~lVsP~Nt~~---------------~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 269 GDGEVFGWSTQRVQN-VIEAL----------QIVRSLVSPGNTSS---------------ITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred cCcccccccHHHHHH-HHHHH----------HHHHHhcCCCCcHH---------------HHHHHHHHHHHcchHHHHHH
Confidence 22 22222111 11000 11111111111100 00113445666778899999
Q ss_pred HhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcC------chHHHHHhh-----cCCCHHHHHHHHHHHHHHhcCCc
Q 000133 613 ILSST--KEETQAKSASALAGIFETRKDLRESSIAVK------TLWSVMKLL-----DVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 613 lL~s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g------~v~~Lv~lL-----~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
++.++ ..+++..+.-++++..+++..+++.+.... -.|.++-++ .......+-+++.++.+....+.
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 77665 567999999999999999888888876543 123333332 33455788888999999887765
Q ss_pred hhHHHHHHhCCChHHHHHHhCC
Q 000133 680 ENREVAAVARDALSPLVVLAGS 701 (2100)
Q Consensus 680 ~~~~~~~~~~~~l~~Lv~ll~~ 701 (2100)
+.++. ++..+++.-.+
T Consensus 403 ~gq~~------~l~tllp~~~n 418 (970)
T KOG0946|consen 403 DGQRK------FLKTLLPSSTN 418 (970)
T ss_pred hhHHH------HHHHHhhhhcc
Confidence 54443 45666655443
|
|
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-08 Score=100.52 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=79.6
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|.+..++.. ..|....|+++.+.+ ...++|++++++.||+|||.|.|....+. .+..|.++|++++.|
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 3789999999999864 345566777777653 34668999999999999999999875332 356899999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceee
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++ .+|++.|.++.+........-|.|
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEc
Confidence 765 569999999998765555555554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=100.78 Aligned_cols=102 Identities=20% Similarity=0.325 Sum_probs=82.4
Q ss_pred Cceeeeeccchhh--hhhCCCcceEEEecCCCCCcccccccc-CCCccccccceeccccCCCCCeEEEEeecCCcc-CCc
Q 000133 1980 TLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVST-GPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM-GKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 2055 (2100)
.|.|+|.+..++. ..+|.+.-|+.+.+|+ ...+||++++ +.||+|||.|+|... .|..+.+.|.|+++..+ +++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~-~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAA-EPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEec-CccCCeEEEEEEEecCCCCCC
Confidence 3789999999993 4456677899999986 6678999876 699999999999886 45678999999998887 456
Q ss_pred ccceEEEEEeeEEee----cccccceeecCCC
Q 000133 2056 SFGKVTIQIDRVVML----GAVAGEYTLLPES 2083 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 2083 (2100)
.+|+|.|.+.++... .....-|.|...+
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 679999999997542 3467789997664
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=99.43 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=81.4
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2051 (2100)
.|.|+|+|++..++... .|...-++++.+. +...++|++++++.+|+|||.|+|.+...... ..|.|+|++++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 36799999999999764 4455667777763 45667899999999999999999987644333 489999999999
Q ss_pred cCC-cccceEEEEEeeEEeecccccceeec
Q 000133 2052 MGK-SSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2052 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+|+ ..+|++.|.++.+...+....-|.|.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 875 55699999999999877666666653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-07 Score=100.27 Aligned_cols=108 Identities=22% Similarity=0.434 Sum_probs=86.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|.|+|+|++..++... .|...-++.+.+++ ....+|+++.++.+|.|+|.|.|.+..+...+.+.+.|+++..
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 47899999999999763 34455677777653 4567899999999999999999998755567899999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecCCCCCCC
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGP 2087 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2087 (2100)
+|++. +|++.|.++++... ...+-|.| .+.+.|.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L-~~~~~~~ 126 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKL-LNQEEGE 126 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEEC-cCccccc
Confidence 87655 59999999999754 67788888 5555664
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-07 Score=98.31 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=83.6
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCC--CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT--PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|+|+|++..++... .|....++.+..+++ ...+|++++++.+|.|+|.|.|.+.. +..+.|.|+|++++.+|++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~-~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPA-GEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCC-CCCCEEEEEEEECCCCCCC
Confidence 379999999999754 344557888877654 45799999999999999999999874 3567999999999999766
Q ss_pred c-cceEEEEEeeEEeec---ccccceeecCCCCCCCCcceEEEEEec
Q 000133 2056 S-FGKVTIQIDRVVMLG---AVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2056 ~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
. +|+++|+++.+.... ...-.|.|.+ .|+ +.+.+.|.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---~g~---i~l~~~~~ 121 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT---QGR---LLLRVSME 121 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC---CCe---EEEEEEEe
Confidence 5 599999998765432 2233456643 454 34666654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-07 Score=95.56 Aligned_cols=87 Identities=17% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCCC---CCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPPK---GQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2051 (2100)
-|.|+|+|++..+++ ..|.+.-+.++.+.. ...+||+|.++..||+|||.|.|.+ |+. +..|++.|++.+.
T Consensus 13 ~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v--~~~~l~~~tL~~~V~d~Dr 89 (118)
T cd08677 13 KAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPL--PEEESLDGTLTLTLRCCDR 89 (118)
T ss_pred CCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeC--CHHHhCCcEEEEEEEeCCC
Confidence 378999999999999 456666777777753 2578899999999999999999864 432 2269999999999
Q ss_pred cCCcc-cceEEEEEeeE
Q 000133 2052 MGKSS-FGKVTIQIDRV 2067 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~ 2067 (2100)
||+.. +|+|.+.+..|
T Consensus 90 fs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 90 FSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCceEEEEEEccccc
Confidence 98877 59999999886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=97.83 Aligned_cols=91 Identities=23% Similarity=0.386 Sum_probs=73.2
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
+|.|+|+|.+..++... .|.+..|+++.+++ ...++|+|+.++.||.|||.|.|..-.+ .....|.++|+++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 57899999999998653 34466788887764 3578899999999999999999975322 2467999999999
Q ss_pred CccCCc-ccceEEEEEeeEE
Q 000133 2050 SKMGKS-SFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~ 2068 (2100)
+.|+++ .+|++.|++++..
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~ 114 (125)
T cd04031 95 DRDGENDFLGEVVIDLADAL 114 (125)
T ss_pred CCCCCCcEeeEEEEeccccc
Confidence 999764 5699999999833
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0021 Score=82.01 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHh
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 236 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL 236 (2100)
..+...|+.+|+++++. +-. + ...|.+.++|++.++.+|..|+.+..++....++..+.+ ++...++|
T Consensus 121 q~vVglAL~alg~i~s~-Ema-r-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL 188 (866)
T KOG1062|consen 121 QYVVGLALCALGNICSP-EMA-R-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLL 188 (866)
T ss_pred eeehHHHHHHhhccCCH-HHh-H-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHH
Confidence 34677888889998742 222 2 246788889999999999999999988887776443333 55666666
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 237 GSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 237 ~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
...+. .+-..+...+..++..+++.-
T Consensus 189 ~ek~h-GVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 189 CEKHH-GVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred hhcCC-ceeeeHHHHHHHHHhcCHHHH
Confidence 65442 455666666666666555443
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-07 Score=96.18 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=80.2
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCCccCCcccc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2058 (2100)
.|+|+|.+..++... |....++.+.+++...++||++++ .+|.|+|.|.|.....-.+ ..+.|.++++..+++. .|
T Consensus 1 ~L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~-~~ 77 (117)
T cd08383 1 SLRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD-IV 77 (117)
T ss_pred CeEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe-eE
Confidence 378999999999988 888899999998766789999999 9999999998866422112 3788888998877543 46
Q ss_pred eEEEEEeeEEeecccccceeecCCC
Q 000133 2059 KVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
..+|+|+..-..+.....|.|.+.+
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~ 102 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVD 102 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCC
Confidence 6667777777788888999997753
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=97.14 Aligned_cols=100 Identities=26% Similarity=0.409 Sum_probs=80.0
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
|.|.|+|++..++.. ..|...-++.+.+++. ..+|++++++.||.|+|.|.+.+. ..++.++++|+++..+|++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-~~~T~~~~~t~nP~W~e~f~~~~~--~~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA-RLQTHTIYKTLNPEWNKIFTFPIK--DIHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-eeecceecCCcCCccCcEEEEEec--CcCCEEEEEEEECCCCCCCc
Confidence 789999999999864 3344667888888643 468999999999999999988764 34789999999999987655
Q ss_pred -cceEEEEEeeEEeecccccceeecCCC
Q 000133 2057 -FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2057 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+|++.++++++.. | ....|.|.+..
T Consensus 78 ~iG~~~~~l~~~~~-~-~~~~~~l~~~~ 103 (119)
T cd08377 78 FLGKVAIPLLSIKN-G-ERKWYALKDKK 103 (119)
T ss_pred eeeEEEEEHHHCCC-C-CceEEECcccC
Confidence 6999999999753 3 35688886553
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=100.66 Aligned_cols=92 Identities=18% Similarity=0.411 Sum_probs=76.5
Q ss_pred Cceeeeeccchhhhh----------------hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1980 TLVVIIKRGNNMKQS----------------VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
.|.|||+|.+++... .|...-++++.+|+. +.+|+|++++.||+|||.|.+....|+..+.+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCE-eeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 378999999887652 234567889999764 568999999999999999999987788889999
Q ss_pred EEeecCCccCCcc-cceEEEEEeeEEeecc
Q 000133 2044 ISCKNKSKMGKSS-FGKVTIQIDRVVMLGA 2072 (2100)
Q Consensus 2044 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2072 (2100)
|+|+|++.+|++. +|++.|++.++...|.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~ 109 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGD 109 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence 9999999996655 6999999999887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-07 Score=95.62 Aligned_cols=101 Identities=20% Similarity=0.351 Sum_probs=82.6
Q ss_pred Cceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1980 TLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
.|.|+|.+..++. ..+|...-++.+.+++....+|+++.++.||+|+|.|.|.+. +..+.+.+.|++++.+|++ .
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEEEEEECCCCCCCCE
Confidence 4789999999886 445667789999997655679999999999999999999763 4457999999999999984 5
Q ss_pred cceEEEEEeeEEee-cccccceeecCC
Q 000133 2057 FGKVTIQIDRVVML-GAVAGEYTLLPE 2082 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2082 (2100)
+|++.|+++..... +....-|.|.+-
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee
Confidence 59999999888654 346778888764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=99.77 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCC------CCCccccccccCCCccccccceeccccCC---CCCeEEEEee
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN------TPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCK 2047 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 2047 (2100)
+.|+|+|++..++... .|...-++++.++. ...++|+|++++.||+|||.|.|.+.... .+..++|+|+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 5689999999999753 35566778887762 45789999999999999999999987532 4569999999
Q ss_pred cCCccCC-cccceEEEEEeeEEeeccc
Q 000133 2048 NKSKMGK-SSFGKVTIQIDRVVMLGAV 2073 (2100)
Q Consensus 2048 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2073 (2100)
+++.||+ +.+|++.|.++++...++-
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~~ 122 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVEDT 122 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCccccc
Confidence 9999985 5559999999998865543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=101.69 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=81.6
Q ss_pred cCCCceeeeeccchhhhhh--CCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeec
Q 000133 1977 LPGTLVVIIKRGNNMKQSV--GNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKN 2048 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2048 (2100)
-.|.|+|+|.+..++...- |.+.-|+++.+. ....++|+|+.++.||.|||.|.|..-.+ -.+..|.|+|+|
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 3589999999999996543 456678877663 23567899999999999999999864322 234589999999
Q ss_pred CCccCC-cccceEEEEEeeEEeecccccceeec
Q 000133 2049 KSKMGK-SSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2049 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
++.||+ +.+|+|.|.+..+...|.-..-|.|.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999985 55699999999998888777767664
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-07 Score=94.54 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=83.0
Q ss_pred ceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-cc
Q 000133 1981 LVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2057 (2100)
|+|+|....++... .|...-++.+.+++....+|+++.++.+|.|+|.|.|.... +..+.+.++|++++.||++ .+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~-~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS-RVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEecc-CCCCEEEEEEEeCCCCCCCCce
Confidence 57888888877543 34466788888866566799999999999999999999763 3678999999999999866 55
Q ss_pred ceEEEEEeeEEeecccccceeecCCCC
Q 000133 2058 GKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++.+.++++...+.+...+.|.+.++
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 999999999988777777777765544
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=96.50 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=75.0
Q ss_pred CCceeeeeccchhhhhh--CCCcceEEEec--CC---CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQSV--GNPSVYCKLTL--GN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~--~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
|.|+|+|.|..|++..- |.+.-+.++.+ ++ ...++|+|+.++.||+|||.|.|.+...- .+-.|++.|++++
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 67999999999997653 33555555443 23 24789999999999999999998754222 3449999999999
Q ss_pred ccCCcc-cceEEEEEeeEEee-cccccceee
Q 000133 2051 KMGKSS-FGKVTIQIDRVVML-GAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 2079 (2100)
.||++- +|.|.|.+.++-.. +.+..-|.|
T Consensus 94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 997655 69999999998443 335555543
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-07 Score=95.72 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=80.8
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
++++|+|.+..++... .|...-|+.+..|+. ...|+|++++.+|+|+|.|.|.+.. .++.|.|+|+|++.++.+.
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE-SVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE-EEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCCc
Confidence 4789999999988753 566778999998754 6789999999999999999997753 3779999999999999999
Q ss_pred cceEEEEEeeEEeecccccceeec
Q 000133 2057 FGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+|++.+.++.. . +.....|.|.
T Consensus 80 lG~~~~~l~~~-~-~~~~~~~~l~ 101 (126)
T cd04046 80 LGQATLSADPN-D-SQTLRTLPLR 101 (126)
T ss_pred eEEEEEecccC-C-CcCceEEEcc
Confidence 99999999864 3 4445668884
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.9e-07 Score=95.95 Aligned_cols=115 Identities=15% Similarity=0.262 Sum_probs=81.1
Q ss_pred ceeeeeccchhhhhhCC--CcceEEEec----CCCCCccccccccCCCccccccceeccccC-------CCCCeEEEEee
Q 000133 1981 LVVIIKRGNNMKQSVGN--PSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIP-------PKGQKLHISCK 2047 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 2047 (2100)
|+|..-|..++-..+++ ..-|.+|.+ ......+|+|++++.||+|||+|+|.+... =+.+.|.++|+
T Consensus 6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~ 85 (155)
T cd08690 6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVY 85 (155)
T ss_pred EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEE
Confidence 34444444445565543 346777764 345678899999999999999999887433 12468999999
Q ss_pred cCCccC--CcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEE
Q 000133 2048 NKSKMG--KSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFL 2096 (2100)
Q Consensus 2048 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2096 (2100)
|++.|+ .+.+|+|.|.++.+.........|.|. ++++..-=.||+++.
T Consensus 86 d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~-~~~k~~Gg~l~v~ir 135 (155)
T cd08690 86 HKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM-DGRKATGGKLEVKVR 135 (155)
T ss_pred eCCCcccCCCeeEEEEEEcccccccCcceEEEEhh-hCCCCcCCEEEEEEE
Confidence 999984 477799999999998887888899885 433222223666553
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-07 Score=96.90 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=72.4
Q ss_pred CCCceeeeeccchhhhh--h-CCCcceEEEecC--CCCCccccccccCCCcccccccee-ccccC-CCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--V-GNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAW-SFEIP-PKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..++... . |...-|+++.++ ....++|||++++.||+|||.|.| .++.. .....|++.|++++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 36799999999999753 3 446688888876 344568999999999999999999 34311 23348999999999
Q ss_pred ccCCccc-ceEEEEEeeEEee
Q 000133 2051 KMGKSSF-GKVTIQIDRVVML 2070 (2100)
Q Consensus 2051 ~~~~~~~-~~~~~~~~~~~~~ 2070 (2100)
.||++.+ |++.|++.++-..
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred CCCCCceeEEEEEeccccCCC
Confidence 9976655 9999999887553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-07 Score=94.53 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=74.2
Q ss_pred Cceeeeeccchhhh--hhCCCcceEEEecCCCCC-ccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1980 TLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPP-RQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
+|.|+|.+..++.. ..|.+.-++++.+|+... .+|++++++.||+|||.|.|... .|.++.|.|+|++++.||+ +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~-~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT-LPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEec-CCCCCEEEEEEEECCCCCCCc
Confidence 47899999999864 445577899999987655 46889999999999999999876 4678999999999999965 5
Q ss_pred ccceEEEEEeeEEe
Q 000133 2056 SFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~ 2069 (2100)
.+|++.|+++++.-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 56999999998854
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-07 Score=95.03 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=83.4
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCC---CCCeEEEEeecCCccC
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 2053 (2100)
+|.|+|....+++.. +|...-++.+.+++....+|+++. .+.+|+|||.|.|.+..+. ..+.|.++|++++.||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 478999999988754 566778999999876788999986 4799999999999887442 2679999999999977
Q ss_pred Cc-ccceEEEEEeeEEeeccc-----ccceeecC
Q 000133 2054 KS-SFGKVTIQIDRVVMLGAV-----AGEYTLLP 2081 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 2081 (2100)
++ .+|++.|.+.++...+.- ...|.|..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 65 569999999999987763 46688854
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00024 Score=86.51 Aligned_cols=328 Identities=11% Similarity=0.085 Sum_probs=210.2
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhC----CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYG----NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG 432 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 432 (2100)
+.+.+....+|++.++. +|++|+..++.|.- +.+. +.+..- -..|.+-+...++++.-....++..+.....
T Consensus 603 ~~ivStiL~~L~~k~p~-vR~~aadl~~sl~~vlk~c~e~-~~l~kl--g~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 603 SMIVSTILKLLRSKPPD-VRIRAADLMGSLAKVLKACGET-KELAKL--GNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHhcchH-HHHHHH--hHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 36777888888888775 69999998887731 1111 111111 1235566667788888777777776665421
Q ss_pred c--chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc---HHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 433 S--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---KWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 433 ~--~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
- .+.-+ .|.+|.|..+|++....++......++.++...++. ++-.. +--.|+.+|.+.+.++|..|...
T Consensus 679 ~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~t 753 (975)
T COG5181 679 FRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATET 753 (975)
T ss_pred ccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhh
Confidence 1 11111 377899999999999999999999999998766653 11111 12358888999999999999999
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-DTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
++.++.- |.-+.++..|++-|+......+...+-+++-.+... .-..+|.|+.--+.....++...+++++.
T Consensus 754 fG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 754 FGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred hhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 9998753 112335566666666544444444444444444332 22566666665555666788889999887
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh----cCCCHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL----DVGSEC 662 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL----~~~~~~ 662 (2100)
+-....+.. ...+ ....|.|.+.|.+.++.-|.-|...+..|+-+.+.. ....+.-+|++++ -+.++.
T Consensus 827 mFeyig~~s--~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt----g~eda~IHLlNllwpNIle~sPh 898 (975)
T COG5181 827 MFEYIGQAS--LDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT----GDEDAAIHLLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHH--HHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc----ccHHHHHHHHHHhhhhccCCCcH
Confidence 765433221 1111 122567777889999999999999999998875432 1112334455555 466777
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 663 ILVEASRCLAAIFLSVRENREVAAVARD-ALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 663 v~~~aa~aL~~L~~~~~~~~~~~~~~~~-~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
++...-..+..++.. +..| ....+.+-|.+|...||.. -|+..|.+
T Consensus 899 vi~~~~Eg~e~~~~~---------lg~g~~m~Yv~qGLFHPs~~VRk~-ywtvyn~m 945 (975)
T COG5181 899 VIQSFDEGMESFATV---------LGSGAMMKYVQQGLFHPSSTVRKR-YWTVYNIM 945 (975)
T ss_pred HHHHHHHHHHHHHHH---------hccHHHHHHHHHhccCchHHHHHH-HHHHHhhh
Confidence 777777777666432 2233 3456678899999988754 66777665
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=94.00 Aligned_cols=200 Identities=20% Similarity=0.190 Sum_probs=155.4
Q ss_pred HHHHHHH--HHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccc
Q 000133 8 LASVAQC--IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 8 ~~~v~~~--~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~ 85 (2100)
...+.+| +..+..++.+.++|+.|+.+|..++..-+++..++. .|+..+++..|.+++.++|..|+.+++...+|+
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence 3445555 444556788889999999999999999999988764 688888899999999999999999999999655
Q ss_pred h-hhHHHHhcCChHHHHHhhcCCCHH-HHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 86 E-LRVKVLLGGCIPPLLGLLKSSSAE-GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 86 ~-~~~~i~~~g~i~~Lv~lL~s~~~~-~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
+ .+..++..|+.+.|+..|.++++. +|..|..|+..+-. +...|...|...++...|.+.+.+.+.. .-.+..+
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~~~fl~~~G~~~L~~vl~~~~~~-~~lkrK~ 231 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQDEFLKLNGYQVLRDVLQSNNTS-VKLKRKA 231 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHHHHHHhcCCHHHHHHHHHcCCcc-hHHHHHH
Confidence 5 788999999999999999876655 56788888887776 4556667788888899999999885433 2356667
Q ss_pred HHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 164 TGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 164 ~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
+..+..+..........+-..|....+..+....+.++++.+..++..+.
T Consensus 232 ~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 232 LFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 77777777655444444456677777777777778888888777765444
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-07 Score=94.69 Aligned_cols=87 Identities=16% Similarity=0.398 Sum_probs=71.0
Q ss_pred ceeeeeccchhhh-hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc-cc
Q 000133 1981 LVVIIKRGNNMKQ-SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS-FG 2058 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2058 (2100)
|.|+|...+.... .+|...-|+.+..|+....+|+|++++.+|+|+|.|.|.+. .++.+.|+|++++.+|++. +|
T Consensus 4 L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 4 LQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred EEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC---CCCEEEEEEEeCCCCCCCcEEE
Confidence 6788887763322 24456788999998666899999999999999999998864 4789999999999997654 59
Q ss_pred eEEEEEeeEEee
Q 000133 2059 KVTIQIDRVVML 2070 (2100)
Q Consensus 2059 ~~~~~~~~~~~~ 2070 (2100)
++.|+++++...
T Consensus 81 ~~~i~l~~l~~~ 92 (125)
T cd04021 81 EASLDLSDILKN 92 (125)
T ss_pred EEEEEHHHhHhh
Confidence 999999998764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-07 Score=93.32 Aligned_cols=102 Identities=21% Similarity=0.299 Sum_probs=81.1
Q ss_pred ceeeeeccchhhhhh-CCCcceEEEec-C----CC-CCccccccccCCCccccccceecccc--CCCCCeEEEEeecCCc
Q 000133 1981 LVVIIKRGNNMKQSV-GNPSVYCKLTL-G----NT-PPRQTKIVSTGPNPEWEESFAWSFEI--PPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~-~~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2051 (2100)
|+|+|.+..++...- |.+.-|+++.+ | +. ..++|||+.++.||.|||.|.|.+.. .+....|.+.|+++..
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 789999999996643 55667888885 4 21 12479999999999999999999863 2455689999999987
Q ss_pred cCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2052 MGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2052 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+|++ .+|++++++..|...|...--|.|.+.
T Consensus 82 ~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 82 ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 7766 579999999999999988888887543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.1e-05 Score=94.18 Aligned_cols=277 Identities=27% Similarity=0.239 Sum_probs=177.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1231 AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1231 ~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
..++.++..+.+.+...|..|+..|+.+ ....++++|..+|.+.+...+..|+.+|+++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 5788999999999889999999887764 45668999999999999999999999999887
Q ss_pred HhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCc------------hHHHHH
Q 000133 1311 ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS------------PAQHSV 1378 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~------------~~~~~A 1378 (2100)
...+++.|++++....+..++..+...|+.+ ....++.+++..+.+... .+|..+
T Consensus 103 ---~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 ---DPEAVPPLVELLENDENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 3457899999998656889999999988866 344457888888888662 356666
Q ss_pred HHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHH
Q 000133 1379 VRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLC 1458 (2100)
Q Consensus 1379 ~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~ 1458 (2100)
+.+|..+.. ...++.+..++.+.+..+|..|..+|+.+..++ ......+.+.+.++...++
T Consensus 170 ~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 170 AEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 666666542 234677777777777788888888887777663 1244566666666666666
Q ss_pred HHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCC
Q 000133 1459 SAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS 1538 (2100)
Q Consensus 1459 ~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~ 1538 (2100)
..+...+ +..... .....+...+...+ +.....+...+.. ........++...+.+
T Consensus 231 ~~~~~~l---~~~~~~-------~~~~~l~~~l~~~~--~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~ 286 (335)
T COG1413 231 KAALLAL---GEIGDE-------EAVDALAKALEDED--VILALLAAAALGA------------LDLAEAALPLLLLLID 286 (335)
T ss_pred HHHHHHh---cccCcc-------hhHHHHHHHHhccc--hHHHHHHHHHhcc------------cCchhhHHHHHHHhhc
Confidence 6555443 222222 13455555555333 3222222222210 1222334455555555
Q ss_pred CCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHH
Q 000133 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1539 ~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
....++..++..++..... .....+.....+++..++..+...+.
T Consensus 287 ~~~~~~~~~~~~l~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 287 EANAVRLEAALALGQIGQE----------KAVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred chhhHHHHHHHHHHhhccc----------chHHHHHHHhcCCchhhHHHHHHHHH
Confidence 5666666666666665542 22333444445555555555554443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=93.96 Aligned_cols=417 Identities=16% Similarity=0.145 Sum_probs=254.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCcc--chHHHHhCCcHHHHH-HhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLI-SLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv-~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
.+-+.++-++-|++|+.-+.++..+--. ....|. ..|..|. ++..+++...+..+...+...+- .-......+-
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~--k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i-aLg~~~~~Y~ 82 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIR--KVISELAGDYAYSPHANMRKGGLIGLAAVAI-ALGIKDAGYL 82 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHH--HHHHHHHHHhccCcccccccchHHHHHHHHH-HhccccHHHH
Confidence 3445566677788888777777653211 111121 2333222 24445554444433322222210 0111122266
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc----C
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIH----K 556 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~----~ 556 (2100)
++.+++.+..+.+.+.++|..||..|.|++.. .|..+.. ......|.++..+.+..++. ++..|-.+.. .
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv---~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV---AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH---hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 77899999999999999999999999999853 2211111 22335556666665555554 3444443332 2
Q ss_pred CC-----CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 557 SD-----TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 557 ~~-----~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
.. ++.+|-|..-+...++..|.+...-|..+-.....+ .+. .-....+.|..+|.++++++|.-+-.+|.+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~-m~~---yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLE-MIS---YLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHH-HHh---cchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22 234455555555678889998888877665444322 111 112346778888999999999877776665
Q ss_pred Hh----cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCH-HH
Q 000133 632 IF----ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL-EV 706 (2100)
Q Consensus 632 L~----~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~-ev 706 (2100)
+- .. +.. +-....++.++.-+.++.+.++..|...+.-+..-. .......-.|.+..+++.+.+..+ .+
T Consensus 235 fL~eI~s~-P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~--g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 235 FLAEIRSS-PSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP--GRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHhcC-ccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC--CcchhhhhhhhhhhcccCCCCCccccH
Confidence 43 22 211 122357888999999999999999999988775432 222223445667777777776555 35
Q ss_pred HHHHHHHHHHHh--cC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHH
Q 000133 707 AEQATCALANLI--LD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVS 783 (2100)
Q Consensus 707 r~~aa~aL~~L~--~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~ 783 (2100)
++.+...=..|. .+ .....++--..+++.|.+.+.++..+.|-.+..=+..+....++.--. .....++.+..
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~----h~~~if~tLL~ 384 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV----HNDSIFLTLLK 384 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh----hccHHHHHHHH
Confidence 555444332232 22 222222223478899999999999998888877776666655542111 23567788999
Q ss_pred hhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhc
Q 000133 784 FLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCR 855 (2100)
Q Consensus 784 ~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~ 855 (2100)
.|.+.+++++ ..++..+++++..+.+.++ -.-+-.|.....+.+..++..+.-|+.+||.
T Consensus 385 tLsd~sd~vv-l~~L~lla~i~~s~~~~~~-----------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 385 TLSDRSDEVV-LLALSLLASICSSSNSPNL-----------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hhcCchhHHH-HHHHHHHHHHhcCcccccH-----------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 9999889999 9999999999887776322 2234456666677777788888888888854
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.3e-05 Score=89.11 Aligned_cols=178 Identities=20% Similarity=0.164 Sum_probs=149.6
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
+.+.+-++.|..-|..++.+ -++...+...||+.+++..+++.+..+|+.|+++++.++..+|..+..+.+.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34677888888888888877 66778888999999999999999999999999999999999999999999999999999
Q ss_pred HhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCC--------
Q 000133 491 QILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--GSANGKEIAAKTLNHLIHKSDT-------- 559 (2100)
Q Consensus 491 ~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~aL~~L~~~~~~-------- 559 (2100)
..|.+. +..+|..|..|++.+-.+++.....+...++...|...+++ .+.+.+.++...+..+......
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 67788999999999999999999999999999999999999 5667899999999988764421
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLS 589 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~ 589 (2100)
+....+..+....+.++++++..++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 223334455556677788887777766554
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=88.38 Aligned_cols=80 Identities=30% Similarity=0.596 Sum_probs=65.6
Q ss_pred ceeeeeccchhhhhhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecC-------
Q 000133 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK------- 2049 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 2049 (2100)
|.|+|....+++ |...-++.|.+.. ....+||++.++.||+|||+|++.++ ..+.|.+.|+++
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~---~s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE---GSQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC---CCCEEEEEEEEcccccccc
Confidence 689999999997 4577788886643 24578999999999999999999876 367999999997
Q ss_pred CccCCccc-ceEEEEEee
Q 000133 2050 SKMGKSSF-GKVTIQIDR 2066 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~~ 2066 (2100)
+.+|++.+ |+..|++|.
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 46677555 999999974
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=92.01 Aligned_cols=89 Identities=25% Similarity=0.363 Sum_probs=71.7
Q ss_pred Cceeeeeccchhh-hhhCCCcceEEEecCC------------CCCccccccccCCCccc-cccceeccccCCCCCeEEEE
Q 000133 1980 TLVVIIKRGNNMK-QSVGNPSVYCKLTLGN------------TPPRQTKIVSTGPNPEW-EESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+.+|++++..+++ ..+|.+.-|+++.++. +..++|+|++++.||+| +|.|.|... .++.|.|+
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~---~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL---PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC---CCCEEEEE
Confidence 4688999999985 4456677777777743 23689999999999999 999999873 56899999
Q ss_pred eecCCccC----CcccceEEEEEeeEEeec
Q 000133 2046 CKNKSKMG----KSSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2046 ~~~~~~~~----~~~~~~~~~~~~~~~~~~ 2071 (2100)
|+|+...| ++.+|+++|++..+...+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99976654 478899999999997643
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-07 Score=96.07 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--C--CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--N--TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|+|+|.+..++.. ..|....|++++++ + ...++|+|++++.||+|||.|.|.+..... ...|.++|++++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 5889999999999864 34456678887773 2 235689999999999999999998653333 458999999999
Q ss_pred ccCCcc-cceEEEEEeeE
Q 000133 2051 KMGKSS-FGKVTIQIDRV 2067 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~ 2067 (2100)
.||++. +|++.|.++.+
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 998754 69999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.9e-07 Score=94.13 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=69.4
Q ss_pred CCceeeeeccchhhhhh----CCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCC-CCeEEEEeecC
Q 000133 1979 GTLVVIIKRGNNMKQSV----GNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNK 2049 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2049 (2100)
|.|+|+|++..|+...- ++..-|.++.++.+. .|+|+|++++.||+|||.|+|.+...-. .-.|.++|+++
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 67999999999998653 446778888877554 4589999999999999999997542222 23899999999
Q ss_pred CccCCcc-cceEEEEEe
Q 000133 2050 SKMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~ 2065 (2100)
..||++. +|+|.|.+.
T Consensus 95 d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 95 DSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCCcCcceeceEEecCc
Confidence 9998764 499999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00016 Score=90.35 Aligned_cols=248 Identities=25% Similarity=0.275 Sum_probs=156.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
..++.++..+.+++..++..+...+..+... ..++.+..++.+.++.++..|+.+|+.+- ++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh----
Confidence 4577788899998999999999886554332 67899999999999999999999999986 343
Q ss_pred HHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh------------hHHHHH
Q 000133 480 ITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA------------NGKEIA 546 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~~~~~A 546 (2100)
.++.|+.++. +++..+|..|+++|..+-.. ..+.+|+..+++... .++..+
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 7899999999 58999999999999998642 247888888887552 234444
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHH
Q 000133 547 AKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSA 626 (2100)
Q Consensus 547 a~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa 626 (2100)
..+|+.+ +++..++.+...+.+....+|..+..+|+.+.... ..+.+.+...+.+.+..+|..++
T Consensus 170 ~~~l~~~---~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGEL---GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHc---CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 4444444 34455556666666655566666666555332111 12245555555666666666666
Q ss_pred HHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHH
Q 000133 627 SALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706 (2100)
Q Consensus 627 ~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~ev 706 (2100)
.+|..+... ..++.+...+.+.+..+...+..+.... ........+...+.+....+
T Consensus 235 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~ 291 (335)
T COG1413 235 LALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGAL------------DLAEAALPLLLLLIDEANAV 291 (335)
T ss_pred HHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhccc------------CchhhHHHHHHHhhcchhhH
Confidence 555555433 2345555555555544444444333311 01223444455555555555
Q ss_pred HHHHHHHHHHHh
Q 000133 707 AEQATCALANLI 718 (2100)
Q Consensus 707 r~~aa~aL~~L~ 718 (2100)
+..++.++..+.
T Consensus 292 ~~~~~~~l~~~~ 303 (335)
T COG1413 292 RLEAALALGQIG 303 (335)
T ss_pred HHHHHHHHHhhc
Confidence 555555555443
|
|
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.7e-07 Score=94.26 Aligned_cols=85 Identities=25% Similarity=0.436 Sum_probs=68.7
Q ss_pred CCceeeeeccchhhhh-hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2052 (2100)
+.|+|+|.+..|+... .|..+.|.++.+..+ .+|+|||++++.||+|||.|.|.+...+..+ .|+++|++++.+
T Consensus 15 ~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 15 NRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred CeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 5689999999999643 455677887776532 4778999999999999999999987555664 899999999988
Q ss_pred CCcc-cceEEEE
Q 000133 2053 GKSS-FGKVTIQ 2063 (2100)
Q Consensus 2053 ~~~~-~~~~~~~ 2063 (2100)
+++. +|+|.|.
T Consensus 95 ~~~~~lG~v~ig 106 (137)
T cd08409 95 RKSKLLGRVVLG 106 (137)
T ss_pred CCcceEEEEEEC
Confidence 7664 4999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=93.59 Aligned_cols=97 Identities=21% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----------------------------CCccccccccCCCccccc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----------------------------PPRQTKIVSTGPNPEWEE 2027 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 2027 (2100)
.|.|+|+|++..++.. ..|...-|+.+.+++. ...+|+|++++.||+|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 3789999999999864 3455678888887643 236899999999999999
Q ss_pred cceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceee
Q 000133 2028 SFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.|.|.+.. +.++.|.|+|++++ .+.+|++.|.++.+...| +.+-|.|
T Consensus 107 ~F~f~v~~-~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~-~d~W~~L 153 (153)
T cd08676 107 TFRFEVED-VSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCG-LDSWFKL 153 (153)
T ss_pred EEEEEecc-CCCCEEEEEEEecC---CCeEEEEEEEHHHhCCCC-CCCeEeC
Confidence 99999874 45789999999997 778899999999998433 4555544
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-06 Score=93.07 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=72.3
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|+|+|.+..++.. ..|.+.-|+++.+++ ...++|+|++++.||+|||.|.|.+..+.. +..|.++|++++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 5889999999999964 345566788887753 346789999999999999999998764433 468999999999
Q ss_pred ccCC-cccceEEEEEee
Q 000133 2051 KMGK-SSFGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~-~~~~~~~~~~~~ 2066 (2100)
.+++ +.+|+|.|.++.
T Consensus 92 ~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 92 IGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCccEEEEEEEecCC
Confidence 9876 456999999985
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-07 Score=95.41 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++... .|....|+++.+++. ...+|+++.++.+|.|||.|.|.+..+. .++.|.|+|+++..
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 93 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence 7899999999998764 556778998888654 3568999999999999999998765332 26799999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecCC
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|+++. +|++.|+++. .......-|.|...
T Consensus 94 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 94 VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 87655 5999999999 55556666777443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-06 Score=90.16 Aligned_cols=100 Identities=15% Similarity=0.377 Sum_probs=79.1
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc------
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM------ 2052 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 2052 (2100)
|+|+|.+..++.. ..|.+.-|+.+..|+ ...+|+++.++.+|+|+|.|.|....+ .+.+.|+|++++.+
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 7899999998864 345566889999975 467899999999999999999876532 57899999998753
Q ss_pred ------CCcccceEEEEEeeEEeecccccceeecCCCCC
Q 000133 2053 ------GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKS 2085 (2100)
Q Consensus 2053 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2085 (2100)
+.+.+|++.|+++.+ .+....-|.|.+.++.
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~--~~~~~~w~~L~~~~~~ 116 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTL--SGEMDVWYNLEKRTDK 116 (127)
T ss_pred eeccccCCCcceEEEEEhHHc--cCCCCeEEECccCCCC
Confidence 456789999999985 4666778888765543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.5e-07 Score=86.41 Aligned_cols=80 Identities=26% Similarity=0.536 Sum_probs=68.8
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCC--ccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-Cc
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPP--RQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-KS 2055 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2055 (2100)
|+|+|++..++.. ..+....++.+.++..+. ..|++++++.+|.|+|.|.|.+..++..+ |+|++++++.|| +.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-LSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-EEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-eEEEEEECCCCCCCC
Confidence 6899999999987 566677999999987766 99999999999999999999988555555 999999999999 56
Q ss_pred ccceEE
Q 000133 2056 SFGKVT 2061 (2100)
Q Consensus 2056 ~~~~~~ 2061 (2100)
.+|+|+
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 669875
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=95.84 Aligned_cols=226 Identities=17% Similarity=0.156 Sum_probs=153.1
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhccCCcccHHHHHh------cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 000133 444 IQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITA------AGGIPPLVQILESGSAKAKEDSASILRNLCNHS 515 (2100)
Q Consensus 444 i~~Lv~lL~--s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~ 515 (2100)
...++.+|+ ++++++..+....+..+...++.....+.. .....++++++..++..++..|+..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445555554 468889999999999998877776666665 235789999999999999999999999999875
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcC----ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 516 EDIRACVESADAVPALLWLLKNG----SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
+....... .+.++.+++.+.+. +...+..+..+|.+|.. ..
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~----------------------------------~~ 181 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR----------------------------------SK 181 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT----------------------------------SH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC----------------------------------cc
Confidence 54333221 45667777777652 11233444444444432 21
Q ss_pred CchhHHHHhhhccchHHHHHHHh------c-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHH
Q 000133 592 SFSDILREGSAANDAVETMIKIL------S-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECI 663 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL------~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v 663 (2100)
..|..+.+.++++.+..++ . ..+..+++.++.+++-|+.+ ++..+.+...+.+|.|+++++ ...+.+
T Consensus 182 ----~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 182 ----EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKV 256 (312)
T ss_dssp ----HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHH
T ss_pred ----hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchH
Confidence 1455667788999999988 2 34678999999999999997 788888989999999999995 456789
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC--CCHHHHHH
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS--PVLEVAEQ 709 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~--~~~evr~~ 709 (2100)
.+-+..++.|+.....+.....++..+.++.+-.+... +++|+.+-
T Consensus 257 vRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 257 VRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999877655456667888888777777653 67777643
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-06 Score=91.24 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=70.8
Q ss_pred hhCCCcceEEEecCCCC------CccccccccCCCccccccceeccccCCCCCeEEEEeecCCc----cCCc-ccceEEE
Q 000133 1994 SVGNPSVYCKLTLGNTP------PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK----MGKS-SFGKVTI 2062 (2100)
Q Consensus 1994 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~ 2062 (2100)
.+|.+.-|+++.++..+ .++|+|++++.||+|+|+|.|.+. .+..+.|.++|++++. +|++ .+|+|+|
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~-~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i 95 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY-FEEVQKLRFEVYDVDSKSKDLSDHDFLGEAEC 95 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE-eEeeeEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence 35666778888887654 489999999999999999999865 4567899999999987 6554 4699999
Q ss_pred EEeeEEeecccccceee
Q 000133 2063 QIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2063 ~~~~~~~~~~~~~~~~~ 2079 (2100)
+++++.......-.|.|
T Consensus 96 ~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 96 TLGEIVSSPGQKLTLPL 112 (120)
T ss_pred EHHHHhcCCCcEEEEEc
Confidence 99999987777778888
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.8e-05 Score=87.19 Aligned_cols=272 Identities=16% Similarity=0.124 Sum_probs=179.8
Q ss_pred hHHHHhCCcHHHHHHhhCCCCHH--HHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHHHHHHH
Q 000133 435 WRALQGREGIQLLISLLGLSSEQ--QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNL 511 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~~--v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~aL~~L 511 (2100)
+.++...|++..|++++..++.+ ++.+|...|-.+. ..+++..+...| ...++.+-+. ..++.+...+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34677789999999999998755 4888999999887 367888888776 6666666543 3678888899999999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
-.|+++.+..++..|++..++-..+..+|...+.++-+|+|.+-+.-. +
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~---------------a---------------- 298 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQ---------------A---------------- 298 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchh---------------H----------------
Confidence 999999999999999999999888988999999999999998764421 1
Q ss_pred CchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHH
Q 000133 592 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 671 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL 671 (2100)
.+..+....+-+.|..+-.+.++-+|.+||.+++.|+.+ ++.-..+...|-+...--++.+.++..- ++--
T Consensus 299 -----~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~ 369 (832)
T KOG3678|consen 299 -----VQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRF---ARDA 369 (832)
T ss_pred -----HHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchh---hhhh
Confidence 122333333455566666777888999999999999986 6665666666643333333333343210 0100
Q ss_pred HHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcHHH-HHHHHcCcHHHHHHHHccCChhHH
Q 000133 672 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEVS-EKAIAEEIILPATRVLCEGTISGK 748 (2100)
Q Consensus 672 ~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~~~~~-~~~v~~~~v~~L~~ll~~~~~~~~ 748 (2100)
..-+.+ ...++++.|+.+|.+...|.|..++.-++.=.. ..... .-+-+-++|..|-++..+.+.-..
T Consensus 370 hd~aQG---------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaa 440 (832)
T KOG3678|consen 370 HDYAQG---------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAA 440 (832)
T ss_pred hhhhcc---------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHH
Confidence 011111 124688999999998777766555544432211 11111 111244666666666665444444
Q ss_pred HHHHHHHHHH
Q 000133 749 TLAAAAIARL 758 (2100)
Q Consensus 749 ~~Aa~aL~~l 758 (2100)
.-|..||--+
T Consensus 441 kfAseALtvi 450 (832)
T KOG3678|consen 441 KFASEALTVI 450 (832)
T ss_pred HHHHHHHHHh
Confidence 4555555433
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=92.38 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++.. ..|...-|+++.+.++ .+++|+|++++.||+|||.|.|.+......+ .+.+.|++++.
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~ 93 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV 93 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 789999999999964 3455677888876432 4679999999999999999999875333333 69999999999
Q ss_pred cCCccc-ceEEEEE
Q 000133 2052 MGKSSF-GKVTIQI 2064 (2100)
Q Consensus 2052 ~~~~~~-~~~~~~~ 2064 (2100)
++++.+ |++.|..
T Consensus 94 ~~~~~~iG~~~l~~ 107 (135)
T cd08410 94 KSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCcEEEEEEEcC
Confidence 876665 9988653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=95.41 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=153.4
Q ss_pred CchHHHHHHHhc--CCHHHHHHHHHHHHhhhccchhhHHHHhc-------CChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 54 QAVPVLVSLLRS--GSLAVKIQAATVLGSLCKENELRVKVLLG-------GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 54 g~v~~L~~lL~~--~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-------g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
++...++.+|+. .++++...+...+..+..+++.+...... ..+.++++++.++|.-.+..|+..|..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556777787765 47789999999999999877766554332 368899999999999999999999999887
Q ss_pred cCCCCcccccchhccCChHHHHHHhhccCCC-cchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH-----cc--
Q 000133 125 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL-----TL-- 196 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~-~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL-----~s-- 196 (2100)
.+.... .....+.++.+++.+++.... +..++..+..+|.+|. ..+.++..+.+.|+++.+.+++ .+
T Consensus 135 ~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred cCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 332111 111257789999998874322 2235677889999998 5668889899999999999999 22
Q ss_pred CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChH-hHHHHHhCCChHHH
Q 000133 197 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD-ARREIAGSNGIPAM 275 (2100)
Q Consensus 197 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~-~~~~i~~~g~i~~L 275 (2100)
.+..++.+++.+++.|+... .....+...+.++.|+++++....+++.+.+..+|+||....++ +...++..|+++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEP-EIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHhcCH-HHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 34567899999998777654 47788888889999999999988889999999999999986554 66777777666665
Q ss_pred HHhhc
Q 000133 276 INATI 280 (2100)
Q Consensus 276 v~ll~ 280 (2100)
-.+..
T Consensus 289 ~~L~~ 293 (312)
T PF03224_consen 289 QNLSE 293 (312)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00069 Score=80.64 Aligned_cols=347 Identities=14% Similarity=0.102 Sum_probs=222.9
Q ss_pred CCchHHHHHHHhcC-CHHHHHHHHHHHHhhhccchhhHHHHh------c-CChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 53 SQAVPVLVSLLRSG-SLAVKIQAATVLGSLCKENELRVKVLL------G-GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~-~~~v~~~aa~~L~~L~~~~~~~~~i~~------~-g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
+.++..++.++... .++....+...+..+-.++..|..+.. . -..++.+.+|...+.-........+..++.
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 45688899999764 445667777777777766666654331 1 348999999999888777666677776666
Q ss_pred cCCCCcccccchhccCChHH----HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CC
Q 000133 125 GGAKDYVGSKIFSTEGVVPV----LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQ 198 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~----L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~ 198 (2100)
-+... ++.+.... |-.++++....+ ....+.+||..+... +++|-.++.+.|+..++..+.+ .+
T Consensus 144 ~g~~~-------~~~~e~~~~~~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~ 213 (442)
T KOG2759|consen 144 FGNCK-------MELSELDVYKGFLKEQLQSSTNND--YIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCG 213 (442)
T ss_pred hcccc-------ccchHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcc
Confidence 32211 11122222 334445433333 233567788888754 4788889999999999999954 45
Q ss_pred HHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------HhHHHHHhCCCh
Q 000133 199 SSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGI 272 (2100)
Q Consensus 199 ~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i 272 (2100)
-.+|.+.+.+++.|..... ..+.+...+.++.|.++++.+....+-+-++.+++|+....+ +....++.++..
T Consensus 214 ~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~ 292 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL 292 (442)
T ss_pred hhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch
Confidence 6788999999988776543 556677789999999999988778899999999999987654 333445555554
Q ss_pred HHHHHhhcCCCcchhhhhhhHHHHHHHH---HHHH----HhhCCCcchhhhc-cccccCCCChhhhhhhhhhhHHHHHHh
Q 000133 273 PAMINATIAPSKEFMQGEYAQALQENAM---CALA----NISGGLSNVISSL-GQSLESCSSPAQVADTLGALASALMIY 344 (2100)
Q Consensus 273 ~~Lv~ll~~~~~e~~~~~~~~~l~~~a~---~aL~----nl~~~~~~~i~~l-~~~~~~~~~~~~~~~~~gal~~ll~~l 344 (2100)
+. +..|... .-.++++.+.-- ..|. .+|.-+.+.-+-. |.+.-||-....- +|
T Consensus 293 k~-l~~L~~r------kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~------------FW 353 (442)
T KOG2759|consen 293 KT-LQSLEER------KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK------------FW 353 (442)
T ss_pred HH-HHHHHhc------CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc------------hH
Confidence 44 4545321 112233322211 1111 1222112222211 1111222111100 11
Q ss_pred ccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHH
Q 000133 345 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRA 423 (2100)
Q Consensus 345 ~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~a 423 (2100)
+. +..+-.-+...+...|+++|+...+..+-.-|+.-++.. -+.|+.+..+.+.|+...++.++.++|++|+.+|..|
T Consensus 354 ~e-Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 354 RE-NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HH-hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 10 000001245578999999999888766666677777776 6779999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 000133 424 LLKLCNN 430 (2100)
Q Consensus 424 L~~L~~~ 430 (2100)
+..|..+
T Consensus 433 vQ~lm~~ 439 (442)
T KOG2759|consen 433 VQKLMVH 439 (442)
T ss_pred HHHHHhh
Confidence 8876554
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=90.29 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
++.|+|+|.+..++... .|....|+++.+.. ....+|+++.++.+|+|||.|.|..-.+ ..++.+.++|+++
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46799999999998642 34566778777632 3467899999999999999999852212 2357999999999
Q ss_pred CccCCcccceEEEEEeeEEeec
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~ 2071 (2100)
+.|+.+.+|++.|+++++...+
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCc
Confidence 9997788899999999987654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-06 Score=92.86 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=69.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC-C---CCccccccccCCCccccccceeccccCCCC-CeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN-T---PPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++... .|...-|+++.++. + ..++|+|++++.||+|||.|.|.+..+... ..|.++|++++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 47899999999998643 34466788888753 2 356799999999999999999987532222 37999999999
Q ss_pred ccCCcc-cceEEEEEee
Q 000133 2051 KMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~ 2066 (2100)
.||++. +|+|.|.+..
T Consensus 94 ~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 94 RIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCceeEEEEECCcc
Confidence 999865 6999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=90.93 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=67.1
Q ss_pred CCCceeeeeccchhhhhh--CCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..|+...- |.+.-|.++.+-.. ..++|+|++++.||+|||.|.|.+...- ....|.++|++++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 357999999999997653 44667777777422 2568999999999999999999864322 2348999999999
Q ss_pred ccCCcc-cceEEEEEe
Q 000133 2051 KMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~ 2065 (2100)
.||++. +|+|.|...
T Consensus 94 ~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 EDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCeeEEEEECCC
Confidence 886654 599988543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=87.80 Aligned_cols=100 Identities=20% Similarity=0.354 Sum_probs=78.6
Q ss_pred Cceeeeeccchhhhh----hCCCcceEEEecCC-----CCCccccccccCC-CccccccceeccccCCCCCeEEEEeecC
Q 000133 1980 TLVVIIKRGNNMKQS----VGNPSVYCKLTLGN-----TPPRQTKIVSTGP-NPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
.|+|+|.+..++... .|...-++.+.+.+ .....|++++++. +|+|+|.|.|... .|..+.|.++|+++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~-~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT-VPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe-CCCeEEEEEEEEeC
Confidence 479999999999763 45566777777642 3457899998887 9999999999988 55567899999999
Q ss_pred CccCCcccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.++...+|.+.+.++++ ..|. ..|+|...+
T Consensus 82 ~~~~~~~iG~~~~~l~~l-~~g~--~~~~l~~~~ 112 (128)
T cd00275 82 DSGDDDFLGQACLPLDSL-RQGY--RHVPLLDSK 112 (128)
T ss_pred CCCCCcEeEEEEEEhHHh-cCce--EEEEecCCC
Confidence 988777789999999987 3343 568886553
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0015 Score=82.52 Aligned_cols=422 Identities=17% Similarity=0.146 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhh
Q 000133 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELR 88 (2100)
Q Consensus 9 ~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~ 88 (2100)
.++.+|++ +..+.+|..|.+.+..+.-..++.- ..+|.+++-..+.+.++|.-+--+|...+.+.++
T Consensus 38 ~dL~~lLd-----Snkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd- 104 (968)
T KOG1060|consen 38 DDLKQLLD-----SNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD- 104 (968)
T ss_pred HHHHHHHh-----ccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-
Confidence 34555555 5566889999999999887776543 3679999999999999999999999988854432
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhc-cCCCcchHHHHHHHHH
Q 000133 89 VKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKN-GLKSGNVVDNLLTGAL 167 (2100)
Q Consensus 89 ~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~-~~~~~~~v~~~a~~aL 167 (2100)
.. .=.|..+-+-|+++|+..|. .||+-++.-. -.-+.|.++-.++. ..+..+.|+..|+.++
T Consensus 105 --LA-LLSIntfQk~L~DpN~LiRa---sALRvlSsIR-----------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AI 167 (968)
T KOG1060|consen 105 --LA-LLSINTFQKALKDPNQLIRA---SALRVLSSIR-----------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI 167 (968)
T ss_pred --ce-eeeHHHHHhhhcCCcHHHHH---HHHHHHHhcc-----------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 21 13477888899999999994 5566556511 11123444333333 3445566888888888
Q ss_pred HHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcch----------------------------
Q 000133 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV---------------------------- 219 (2100)
Q Consensus 168 ~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~---------------------------- 219 (2100)
-.|-+-+.+...++ ++.+-.||.+.++-|.-.|+.++-..+-..-+.
T Consensus 168 pKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 168 PKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred HHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 88766555555544 335555666665555544444443222110000
Q ss_pred ---hhHHhh------------------------------hchHHHHHH----HhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 220 ---CSRVLA------------------------------ADATKQLLK----LLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 220 ---~~~i~~------------------------------~g~i~~Lv~----lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
+..+.+ .--+..|++ +|.+.+ ..+...+|.+.+.++-.+ +.
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n-~sVVmA~aql~y~lAP~~-~~ 320 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRN-PSVVMAVAQLFYHLAPKN-QV 320 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCC-cHHHHHHHhHHHhhCCHH-HH
Confidence 000000 001122222 222222 356667777777776421 11
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
. ..+.+|+++|.++. .+|.-.+..+.-++..
T Consensus 321 ~------~i~kaLvrLLrs~~----------~vqyvvL~nIa~~s~~--------------------------------- 351 (968)
T KOG1060|consen 321 T------KIAKALVRLLRSNR----------EVQYVVLQNIATISIK--------------------------------- 351 (968)
T ss_pred H------HHHHHHHHHHhcCC----------cchhhhHHHHHHHHhc---------------------------------
Confidence 1 12556777775542 3334334444333321
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCC-CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPR-LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 421 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~-~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 421 (2100)
+|.-+.|.+..++-.. ++..++..-.+-|.+|+........+.+ +-..+.+.+.++-..++
T Consensus 352 ------------~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE------~q~YI~s~d~~faa~aV 413 (968)
T KOG1060|consen 352 ------------RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE------LQTYIKSSDRSFAAAAV 413 (968)
T ss_pred ------------chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH------HHHHHhcCchhHHHHHH
Confidence 2233444454444422 3334455555566666443333333222 33344566666677777
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKA 500 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v 500 (2100)
.+|+..+...... ....+.-|+.++++++..+..+++..+..|...++..... .+..|.+++.+- -+..
T Consensus 414 ~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 414 KAIGRCASRIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHhhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHHhhhhhhhhh
Confidence 7777766553322 2245778899999999999999999999888654443322 345677777543 4566
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHH
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKT 549 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~a 549 (2100)
|....|.++..|..-+... -.+++.+.+-+.+..+.+|-.....
T Consensus 484 RA~IiWLige~~e~vpri~-----PDVLR~laksFs~E~~evKlQILnL 527 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVPRIA-----PDVLRKLAKSFSDEGDEVKLQILNL 527 (968)
T ss_pred hceeeeeehhhhhhcchhc-----hHHHHHHHHhhccccchhhHHHHHh
Confidence 7777777777665422221 2233444444444444444443333
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=85.84 Aligned_cols=275 Identities=17% Similarity=0.179 Sum_probs=183.0
Q ss_pred HHHHhcCCHHHHHHhHccCCHHH--HHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 179 AATVQAGGIDILVKLLTLGQSST--QAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~~~v--~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
..++..|+++.|++++.+++-+. +..|+++|-.+.... ++..+..-| ...++.+.+.....+..+..+++|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 34778899999999999998765 889999997665432 556665554 5555555555555789999999999999
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 336 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ga 336 (2100)
.++.+....++..||++.++--.... ++.+.++++-+|.|+.......+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt---------~P~lLRH~ALAL~N~~L~~~~a~q--------------------- 300 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRT---------DPALLRHCALALGNCALHGGQAVQ--------------------- 300 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccC---------CHHHHHHHHHHhhhhhhhchhHHH---------------------
Confidence 99999999999999999988777654 388999999999998763110000
Q ss_pred hHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHH
Q 000133 337 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV 416 (2100)
Q Consensus 337 l~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v 416 (2100)
-.+.+ ..+.+-|.- |....++..+..|+.+.+.|+.+.+.-..+...|.+...--++.+.||..
T Consensus 301 ----rrmve-----------Kr~~EWLF~-LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~ 364 (832)
T KOG3678|consen 301 ----RRMVE-----------KRAAEWLFP-LAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR 364 (832)
T ss_pred ----HHHHH-----------hhhhhhhhh-hhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch
Confidence 01111 111222222 23344777899999999999999888888888777665544555545431
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhcc--CCcccHHHHHhcCChHHHHHhcc
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN--ENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~--~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
- +.+..++.+ =...+-++.|+.+|++..-+.|..++.-|+.=+. ........+-+.|+|..|-++..
T Consensus 365 F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaS 433 (832)
T KOG3678|consen 365 F----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVAS 433 (832)
T ss_pred h----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhc
Confidence 1 111111100 0011347889999997766666666555543221 11223455667889999988888
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q 000133 495 SGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~ 513 (2100)
+.+...-..|..+|.-+..
T Consensus 434 S~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 434 SPDEVAAKFASEALTVIGE 452 (832)
T ss_pred CchHHHHHHHHHHHHHhcc
Confidence 7666555667777776654
|
|
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=90.47 Aligned_cols=88 Identities=19% Similarity=0.339 Sum_probs=70.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCC-CeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKG-QKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.. ..|....++++.+++ ...++|+|++++.||.|+|.|.|.+...... ..|.++|++++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 3789999999999864 346677888888753 2467899999999999999999987533332 37999999999
Q ss_pred ccCCcc-cceEEEEEe
Q 000133 2051 KMGKSS-FGKVTIQID 2065 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~ 2065 (2100)
.+|++. +|++.|.+.
T Consensus 93 ~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 93 RVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCceeEEEEECCC
Confidence 998655 599999887
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=82.91 Aligned_cols=416 Identities=14% Similarity=0.094 Sum_probs=231.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 407 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.=|++.+.-++-.|+.+|++++.. +.. ....|.+.++++++++-++..|+.|+..+-...|+.... .+
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~--Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~ 181 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP--EMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FV 181 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH--HHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hh
Confidence 345567777888899999998875 221 145677888999999999999999988887656654333 35
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---------------CChhHHHHHHHHHH
Q 000133 487 PPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---------------GSANGKEIAAKTLN 551 (2100)
Q Consensus 487 ~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~Aa~aL~ 551 (2100)
+...++|.+.+..+--.....+..+|..+++.-..+.+ .++.||..|++ ++|=.+-...+.|
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL- 258 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL- 258 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH-
Confidence 66778888888777777888888888877766555554 67777777765 1122333333333
Q ss_pred HHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh-cCCCHHHHHHHHHHHH
Q 000133 552 HLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALA 630 (2100)
Q Consensus 552 ~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~ 630 (2100)
.+|..++++....-...|+.++.......-.-..+ -.+.+...+ -.++..+|..|+.+|+
T Consensus 259 ---------------riLGq~d~daSd~M~DiLaqvatntdsskN~GnAI----LYE~V~TI~~I~~~~~LrvlainiLg 319 (866)
T KOG1062|consen 259 ---------------RILGQNDADASDLMNDILAQVATNTDSSKNAGNAI----LYECVRTIMDIRSNSGLRVLAINILG 319 (866)
T ss_pred ---------------HHhcCCCccHHHHHHHHHHHHHhcccccccchhHH----HHHHHHHHHhccCCchHHHHHHHHHH
Confidence 33334444444444444444443221100000000 011111111 1234455555555555
Q ss_pred HHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 000133 631 GIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 710 (2100)
Q Consensus 631 ~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~a 710 (2100)
.+-.+++.+... =++..|.+....+...+++ +=..++..+++++..+|.+|
T Consensus 320 kFL~n~d~NirY----vaLn~L~r~V~~d~~avqr-------------------------Hr~tIleCL~DpD~SIkrra 370 (866)
T KOG1062|consen 320 KFLLNRDNNIRY----VALNMLLRVVQQDPTAVQR-------------------------HRSTILECLKDPDVSIKRRA 370 (866)
T ss_pred HHhcCCccceee----eehhhHHhhhcCCcHHHHH-------------------------HHHHHHHHhcCCcHHHHHHH
Confidence 555443332211 1233344444333322222 23345566788899999998
Q ss_pred HHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcC-ccchhHhhhhhccCcHHHHHHhhhhcc
Q 000133 711 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSR-KIDYTITDCVNRAGTVLALVSFLESAS 789 (2100)
Q Consensus 711 a~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~-~~~~~~~~~~~~~g~l~~li~~l~s~~ 789 (2100)
..-+..|.-.+... ..+..|+.+|...+++.+...+.-+..+.... +++.+..+ .+.+.+....
T Consensus 371 lELs~~lvn~~Nv~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~id---------tml~Vl~~aG 435 (866)
T KOG1062|consen 371 LELSYALVNESNVR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHID---------TMLKVLKTAG 435 (866)
T ss_pred HHHHHHHhccccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHH---------HHHHHHHhcc
Confidence 88888777555443 35677888888888888888888888777644 33433333 3333333333
Q ss_pred cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc------CChhHHHHHHHHHHHHhcCCcccchh
Q 000133 790 GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD------ATPLLQDKAIEILSRLCRDQPAVLGD 863 (2100)
Q Consensus 790 ~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~~~~~a~~~L~~L~~~~~~~~g~ 863 (2100)
.-|. .+++..|..|..+.... ...+.+..|...+.. ..+.+.+-|.+++..| |+
T Consensus 436 ~~V~-~dv~~nll~LIa~~~~e-----------~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEY--------Gd 495 (866)
T KOG1062|consen 436 DFVN-DDVVNNLLRLIANAFQE-----------LHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEY--------GD 495 (866)
T ss_pred cccc-hhhHHHHHHHHhcCCcc-----------hhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhh--------hH
Confidence 3333 45555555554443210 011122222222222 2455567778888888 55
Q ss_pred ccccc----------ccchHHHHHHHhhc--CCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhc
Q 000133 864 EVTGA----------SGCISSIARRVISC--TNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE 931 (2100)
Q Consensus 864 ~~~~~----------~~~~~~~~~~~l~s--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~ 931 (2100)
+++.. .--+...++.++.+ .+..+|..|-+++.+|+-- ...+.+-|+.++....++.
T Consensus 496 lll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr-----------~~s~~~ri~~lI~~~~~s~ 564 (866)
T KOG1062|consen 496 LLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR-----------FHSSSERIKQLISSYKSSL 564 (866)
T ss_pred HhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh-----------ccccHHHHHHHHHHhcccc
Confidence 55442 12233455556554 4688888888887777632 1222455666665555433
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00074 Score=80.38 Aligned_cols=346 Identities=16% Similarity=0.109 Sum_probs=213.8
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc-------cccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-------SEAKRLLVGLITMATNEVQEELVRALLKLCNN 430 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~-------~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~ 430 (2100)
.....++.++.+...+...+.+..-+..+.+....+..+.. .-.-...+.++...+.-+.....+.+..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 34445556665544333344455555555444333322221 11244567888888888888888888888776
Q ss_pred CccchHHHHhCCc-HHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHH
Q 000133 431 EGSLWRALQGREG-IQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSAS 506 (2100)
Q Consensus 431 ~~~~~~~i~~~g~-i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~ 506 (2100)
....-.. .+... ...|..++.+ .+.+....++.+|..+.. .++.+..++.++|+..++..+.+. +-++|.+.+.
T Consensus 145 g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 5432110 00011 2344555555 566777778999999995 899999999999999999998432 7789999999
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
++|-|+-. +...+.+...+.++.|.++++.. ..++.+-++.++.|++..++..-...-... +-+...+..++.
T Consensus 223 ciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~-----~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 223 CIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIAS-----QMVLCKVLKTLQ 296 (442)
T ss_pred HHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHH-----HHHhcCchHHHH
Confidence 99999974 66667777889999999999975 457888888999999876632111110000 001111222222
Q ss_pred HHHhcc-CchhHHHHhhhccchHHHHHHHhcCCCHHH----HHHHHHHHHHHhcCChh--------hHHHHHhc--CchH
Q 000133 586 SMLSVV-SFSDILREGSAANDAVETMIKILSSTKEET----QAKSASALAGIFETRKD--------LRESSIAV--KTLW 650 (2100)
Q Consensus 586 ~l~~~~-~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~----~~~Aa~aL~~L~~~~~~--------~~~~~~~~--g~v~ 650 (2100)
.|-... +.+|+... +..|-+-|.....++ .+.+---.+.|.+++.+ +.+.+-+. .++.
T Consensus 297 ~L~~rkysDEDL~~d-------i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellk 369 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDD-------IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLK 369 (442)
T ss_pred HHHhcCCCcHHHHHH-------HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHH
Confidence 222211 11121111 222222222111000 11111122334444322 22223322 2789
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 651 SVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 651 ~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
.|+.+|..+ ++.+.--||.=|+...++.|+.+.. +.+.|+=+.++.++.+++++||.+|..|+..|+.
T Consensus 370 iL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~v-v~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 370 ILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAV-VEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHH-HHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999999655 4777888999999999988855554 8889999999999999999999999999988763
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-06 Score=106.69 Aligned_cols=86 Identities=19% Similarity=0.362 Sum_probs=75.0
Q ss_pred CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEeeccccc
Q 000133 1996 GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAG 2075 (2100)
Q Consensus 1996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2075 (2100)
+.+-.+..+.+|+.+--+|||++++.||+|+|.|++.+..| ...|.+.|||++.||.+.+|++.|++.++.....+.+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEE
Confidence 34557889999876555899999999999999999998854 3589999999999999999999999999888778899
Q ss_pred ceeecCCC
Q 000133 2076 EYTLLPES 2083 (2100)
Q Consensus 2076 ~~~~~~~~ 2083 (2100)
-|.|..++
T Consensus 153 Wl~Ll~~~ 160 (868)
T PLN03008 153 WFPVLGAS 160 (868)
T ss_pred EEEccccC
Confidence 99997774
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00022 Score=86.74 Aligned_cols=321 Identities=13% Similarity=0.094 Sum_probs=202.2
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1435 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~ 1435 (2100)
-.+.+++++..+.+.+..+|+.|++.|++++.-.......+-..+...|+.+..+.+..||..| +.|-.+-++-.--+.
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 3457889999999999999999999999999543333334445567889999999988887665 445555444100000
Q ss_pred -HHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcC
Q 000133 1436 -EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH 1514 (2100)
Q Consensus 1436 -~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~ 1514 (2100)
.+.=.+.++.+-.-++.-.+..|....+-++.|-..+...-........+.|+..|.++. ++++.-+.-+|.++...
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s--~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS--DEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHH
Confidence 111133455555555566677788777777777666654422335667888888888655 77776666677776433
Q ss_pred CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCH-HHHHHHHHHH-
Q 000133 1515 PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIH-ILQQRAVKAL- 1592 (2100)
Q Consensus 1515 ~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~-~vr~~Al~AL- 1592 (2100)
-.+.... +.-.+.++.++..+.+.++++|..|..-+........-.......|++..+...+.++.+ .++..|...=
T Consensus 239 I~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 239 IRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 2222221 245567899999999999999999999998887654444444445655556666655444 4565554433
Q ss_pred --HHhhcCChh-HHHhcc-ChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhh-hcccHHHHHHHhhcCCHHHHH
Q 000133 1593 --VSIALTWPN-EIAKEG-GVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFY-LEVPVAVLVRLLRSGSEGTVI 1667 (2100)
Q Consensus 1593 --~~Ls~~~~n-~l~~~G-~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~-~~~~v~~Lv~ll~~~~~~~~~ 1667 (2100)
.++-..... .=++-| ++..|.+.++++....+.+......-...+.- ++-+. .+...++|++-+++.++++..
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p--~ql~~h~~~if~tLL~tLsd~sd~vvl 395 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP--GQLLVHNDSIFLTLLKTLSDRSDEVVL 395 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc--chhhhhccHHHHHHHHhhcCchhHHHH
Confidence 233222211 112322 35566666666443444444442222222211 11222 234678899999999999999
Q ss_pred HHHHHHHHhccCChh
Q 000133 1668 GSLNALLVLESDDGT 1682 (2100)
Q Consensus 1668 ~a~~aL~~L~~~~~~ 1682 (2100)
.++..|.+++++...
T Consensus 396 ~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 396 LALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999887664
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0093 Score=78.02 Aligned_cols=241 Identities=24% Similarity=0.266 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcch---hhhhhhhccCCchHHHHHHHhcC-------CHHHHHHHH
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE---NAFSAVGSHSQAVPVLVSLLRSG-------SLAVKIQAA 75 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~---~~~~~i~~~~g~v~~L~~lL~~~-------~~~v~~~aa 75 (2100)
+....+.+|+..|+... +++|..++..+-.+.+..+ ..++.+....| ...+-++|+++ ....+.-+.
T Consensus 2 ~~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred CchHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 34678999999887654 6889999988888888765 23334444344 67888889883 346677788
Q ss_pred HHHHhhhccchhhHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC
Q 000133 76 TVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA-EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 154 (2100)
Q Consensus 76 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~ 154 (2100)
.+|..+|..++....---.+.||.|++.+.+.+. +....|..+|..++. ...|.+.+.+.|++|.|.+.+..+
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~-- 152 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQ-- 152 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhC--
Confidence 9999999877754433334779999999987777 888899999999997 677899999999999999999872
Q ss_pred CcchHHHHHHHHHHHhccCCh-hhHHH--HHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc-----hhhHHhhh
Q 000133 155 SGNVVDNLLTGALRNLSTSTE-GFWAA--TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-----VCSRVLAA 226 (2100)
Q Consensus 155 ~~~~v~~~a~~aL~nL~~~~~-~~~~~--i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~-----~~~~i~~~ 226 (2100)
+...+.+...+.+++...+ ..|.. -.-...++.+....+......+-..+..|..+....+. ....-.-.
T Consensus 153 --~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 153 --SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 3345667788888875443 11110 00113345555555555666677778888777655421 11111223
Q ss_pred chHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 000133 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSD 257 (2100)
Q Consensus 227 g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~ 257 (2100)
.....+-.+|++....+-|..+......+..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3455556667766556666666665555543
|
|
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=85.63 Aligned_cols=82 Identities=12% Similarity=0.301 Sum_probs=66.2
Q ss_pred ceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCC--------CCCeEEEEeecCC
Q 000133 1981 LVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP--------KGQKLHISCKNKS 2050 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 2050 (2100)
|.|+|++..++. ..+|...-++++.+|+ ..++|++++++.||.|+|.|.|..-..+ ..+++.++|++++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 678999999884 4566677899999974 5788999999999999999999743221 2258999999999
Q ss_pred ccCCc-ccceEEEE
Q 000133 2051 KMGKS-SFGKVTIQ 2063 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~ 2063 (2100)
.+|++ .+|++.|.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99875 66999974
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-06 Score=89.18 Aligned_cols=89 Identities=16% Similarity=0.316 Sum_probs=70.5
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.+.|+|+|.+..++.. ..|.+.-|+++.+..+ ..++|+|++++.||+|+|.|.|.+..+. .+..|.|+|++++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 3679999999999864 3556677888877432 2568999999999999999998864222 3447889999999
Q ss_pred ccCCccc-ceEEEEEee
Q 000133 2051 KMGKSSF-GKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~~-~~~~~~~~~ 2066 (2100)
.||++.+ |++.|.++.
T Consensus 94 ~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCccEEEEEECCcC
Confidence 9976655 999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0034 Score=83.11 Aligned_cols=565 Identities=14% Similarity=0.107 Sum_probs=326.2
Q ss_pred hcCCHHHHHHHHHHHHhhhc-cchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCCh
Q 000133 64 RSGSLAVKIQAATVLGSLCK-ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVV 142 (2100)
Q Consensus 64 ~~~~~~v~~~aa~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~v 142 (2100)
...+-.-+.+...-+.+++. ..+.+. +.-.+|.+-... .++.++...++.-+.++.. . +|-+.+ ..-..
T Consensus 92 ~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~----~-v~~~~~-~~~ll 161 (759)
T KOG0211|consen 92 SNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLP----D-VGGPEY-AHMLL 161 (759)
T ss_pred Cchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccch----h-ccchhH-HHHhh
Confidence 33333455666666666552 111111 334467777776 6667777766666665554 1 111111 11122
Q ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhH
Q 000133 143 PVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSR 222 (2100)
Q Consensus 143 p~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~ 222 (2100)
|++-.+. . .....++..+...+...+...+.... ....++.+-.+-...-...+..+|+++.......++ .
T Consensus 162 ~~le~l~-~--~eet~vr~k~ve~l~~v~~~~~~~~~---~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~---~ 232 (759)
T KOG0211|consen 162 PPLELLA-T--VEETGVREKAVESLLKVAVGLPKEKL---REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD---D 232 (759)
T ss_pred HHHHhhh-H--HHHHHHHHHHHHHHHHHHHhcChHHH---HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh---H
Confidence 2222222 2 12233566666666666543322111 122233333322221123456677777666543331 1
Q ss_pred HhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHH
Q 000133 223 VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCA 302 (2100)
Q Consensus 223 i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~a 302 (2100)
.+... ++...+-+-.+..+.+|..++.-+.+++.. .....+..+.++.+..+..... ..+++.|..+
T Consensus 233 ~vk~e-lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddq---------dsVr~~a~~~ 299 (759)
T KOG0211|consen 233 AVKRE-LRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQ---------DSVREAAVES 299 (759)
T ss_pred HHHHH-HHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcch---------hhHHHHHHHH
Confidence 22222 233333333334468999999999998863 3347777888888888886542 5677777777
Q ss_pred HHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHH
Q 000133 303 LANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEA 382 (2100)
Q Consensus 303 L~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~a 382 (2100)
+.++..- ++++. +. ...+.+.+++..+.+. +.++...+..
T Consensus 300 ~~~l~~l-----------~~~~~------d~----------------------~~~~~~~l~~~~~d~~-~~v~~~~~~~ 339 (759)
T KOG0211|consen 300 LVSLLDL-----------LDDDD------DV----------------------VKSLTESLVQAVEDGS-WRVSYMVADK 339 (759)
T ss_pred HHHHHHh-----------cCCch------hh----------------------hhhhhHHHHHHhcChh-HHHHHHHhhh
Confidence 6655431 11110 00 0123334444443332 2345554444
Q ss_pred HHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 383 LASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 383 L~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
...|+..-. .......-.++...++++...+++..++.-...++..-. .....+.....+|.+..+..+.+..++..
T Consensus 340 ~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 340 FSELSSAVG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred hhhHHHHhc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHH
Confidence 444422100 011222335566667777777777777766666654422 12233444456788888888999999988
Q ss_pred HHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh
Q 000133 462 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN 541 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 541 (2100)
.+....++.-..+.. .- -..-.|.++..+++..+.++.+..+.+..+-..++.........-.+|.++.+-.+..|+
T Consensus 418 ~a~~~~~~~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 418 LASVITGLSPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred HhccccccCccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHH
Confidence 887777774322210 00 012456777788888999999988877666555555555555667789999988888899
Q ss_pred HHHHHHHHHHHHhcCCCCC-cHHHHHHH----hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC
Q 000133 542 GKEIAAKTLNHLIHKSDTA-TISQLTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS 616 (2100)
Q Consensus 542 ~~~~Aa~aL~~L~~~~~~~-~i~~L~~l----L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s 616 (2100)
++....+.+..++....-. ..+.+..+ +.+...+++.++...+..++...+.+- .+... ++.+.....+
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w-~~~~~-----i~k~L~~~~q 568 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW-ARLEE-----IPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch-hHHHh-----hHHHHHHhcC
Confidence 9999988888887654311 12223333 444455788888888888877665222 12222 6777777666
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH
Q 000133 617 TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV 696 (2100)
Q Consensus 617 ~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv 696 (2100)
++-..|.....++..++. -.-..+.....+|++..+..+..+.++..+|..+-.+...... ...+....|.+.
T Consensus 569 ~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~ 641 (759)
T KOG0211|consen 569 DNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLE 641 (759)
T ss_pred cccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHH
Confidence 677777766666665542 1222355556899999999999999999999999888543321 234455677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHHh
Q 000133 697 VLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 697 ~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
.+..+++.++|..|..|...+.
T Consensus 642 ~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 642 TLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HhccCcccchhHHHHHHHHHHH
Confidence 8888889999988888877664
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0027 Score=79.70 Aligned_cols=400 Identities=12% Similarity=0.082 Sum_probs=238.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
-++.+|.+.-+-+|..|+..+..++..-++ ++. ..+|.|++-|+++++.++.+|+.++|.|++.+|.+.-.+
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L--- 219 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL--- 219 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc---
Confidence 477889999999999999999998876443 454 678999999999999999999999999999888764332
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHH--HHhcC-CC
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLN--HLIHK-SD 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~--~L~~~-~~ 558 (2100)
-|.+.++|-++ +.-+.-.....+++|+-.-|... ...+++|.+++++... .....+..++- +|... ++
T Consensus 220 --AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 220 --APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred --cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 47778887655 45555566777777775534333 3478999999988543 34444444432 33332 22
Q ss_pred C-----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 559 T-----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 559 ~-----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
. -.+..|-.++.++++..|--+.-|++.++.- ++..+++. -..++.+|.+.++.+|-.|...|..+.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt--Hp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT--HPKAVQAH------KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh--CHHHHHHh------HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 2 2355566678889999888777777766543 33323322 456788999999999999999999888
Q ss_pred cCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCC-ChHHHHHHhCCCCHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRENREVAAVARD-ALSPLVVLAGSPVLEVAEQAT 711 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~-~l~~Lv~ll~~~~~evr~~aa 711 (2100)
.. ++... ++..|+.-+. .+....+-.-+.-+..+|+... ..-+.+-. .+..|+.+.+-+..+.-..-+
T Consensus 365 sk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~ 434 (877)
T KOG1059|consen 365 SK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN---YQYITDFEWYLSVLVELARLEGTRHGSLIA 434 (877)
T ss_pred hh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccchhhHHH
Confidence 53 44332 3555665553 2333566666666777766542 22233323 456666776654432222233
Q ss_pred HHHHHHhcCc-HHHHHHHHcCcHHHHHHHHc---------cC--ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHH
Q 000133 712 CALANLILDS-EVSEKAIAEEIILPATRVLC---------EG--TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVL 779 (2100)
Q Consensus 712 ~aL~~L~~~~-~~~~~~v~~~~v~~L~~ll~---------~~--~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~ 779 (2100)
.-+.+++.+- ..+...+ .....++. .. -.++-..|+|++++.+....+. .+++.
T Consensus 435 eQi~Dv~iRV~~iR~fsV-----~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---------~~~le 500 (877)
T KOG1059|consen 435 EQIIDVAIRVPSIRPFSV-----SQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---------NDTLE 500 (877)
T ss_pred HHHHHHheechhhhHhHH-----HHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---------HHHHH
Confidence 3344444332 2222111 11111111 11 1236779999999988776654 23333
Q ss_pred HHHHhhhh----cccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHH
Q 000133 780 ALVSFLES----ASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 780 ~li~~l~s----~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L 853 (2100)
.+.+--.+ .-..+.......++..++.+.+-.. ...........+++.|-.......-++|+.|.+++.-+
T Consensus 501 amlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~---~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 501 AMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK---DFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred HHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc---chhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 33321110 0134443555566666554433210 00011111122333333333445679999999988766
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0074 Score=75.97 Aligned_cols=254 Identities=13% Similarity=0.100 Sum_probs=163.7
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCS 221 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~ 221 (2100)
.+-++.+|.+ +.++++..|...++.+....++.-+ .++|.|++=|..+|+.++..|..+++.|+..++.+.-
T Consensus 146 a~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 146 ADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4556777766 4577888888888777644333322 3589999999999999999999999999998887766
Q ss_pred HHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHH
Q 000133 222 RVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMC 301 (2100)
Q Consensus 222 ~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~ 301 (2100)
.+ .|.+.++|.++.+.-+-.-....+++|+--.|--.+ .-+++|..++.+.+ .-.+...++.
T Consensus 218 ~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~--------AmSLlYECvN 279 (877)
T KOG1059|consen 218 QL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTV--------AMSLLYECVN 279 (877)
T ss_pred cc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhH--------HHHHHHHHHH
Confidence 65 688889988765434566666777777754443322 34788888886643 1223333333
Q ss_pred HHH--HhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHH
Q 000133 302 ALA--NISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERT 379 (2100)
Q Consensus 302 aL~--nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~a 379 (2100)
++. |++.|. ++.. |
T Consensus 280 TVVa~s~s~g~------------------------------------------------------------~d~~----a 295 (877)
T KOG1059|consen 280 TVVAVSMSSGM------------------------------------------------------------SDHS----A 295 (877)
T ss_pred HheeehhccCC------------------------------------------------------------CCcH----H
Confidence 221 111110 0000 0
Q ss_pred HHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHH
Q 000133 380 IEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQ 459 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~ 459 (2100)
..-| ++..|-.++.+.|+..+.-++-++..+...++.. +. .--..++++|.+.++.+|
T Consensus 296 siqL-----------------CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vq--a~kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 296 SIQL-----------------CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQ--AHKDLILRCLDDKDESIR 353 (877)
T ss_pred HHHH-----------------HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HH--HhHHHHHHHhccCCchhH
Confidence 0000 2334555667888888988999998888776542 22 123457788999999999
Q ss_pred HHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCH-HHHHHHHHHHHHHhcC
Q 000133 460 ECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA-KAKEDSASILRNLCNH 514 (2100)
Q Consensus 460 ~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~vre~A~~aL~~L~~~ 514 (2100)
..|...|..+. +.++..+| +..|+..+...+. ..|..-+.-+-.+|..
T Consensus 354 lrALdLl~gmV--skkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 354 LRALDLLYGMV--SKKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHHHHHHh--hhhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 99999999998 35665555 4456666654433 5565555555556643
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0042 Score=70.81 Aligned_cols=347 Identities=14% Similarity=0.133 Sum_probs=222.1
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhh--HHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRA--LAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~--~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
++..|-|-.-|..++..++.-+..-++.+-.+.+++. .+..-|.+++++.++..+... |+++...+.+.+..++..+
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFP 159 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcH
Confidence 3445555556666777777778888888877766442 221115788888888888774 7899999999999999999
Q ss_pred chHHHHHhhcChHHHH--HHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcC-CChhHHHHHHHHHH
Q 000133 1349 RIRSTVAAARCVEPLV--SLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYG-RNYMLHEAISRALV 1424 (2100)
Q Consensus 1349 ~~r~~~~~~~~i~~Lv--~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~vr~~A~~aL~ 1424 (2100)
+....+..+....++- .+--.-++-+|...+.-+.+++. .+.........|.+..|..-|+. .|.-|+-+.++...
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 8888888777665543 23333456678888888888885 77777777889999988877775 88889999999999
Q ss_pred HhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCC-CchhHhH
Q 000133 1425 KLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF-GPDGQHS 1503 (2100)
Q Consensus 1425 ~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~-~~~~~~~ 1503 (2100)
.++... ..++-+...|.|+.+..++...+..--+....+ ..+.+++..... +...+ .
T Consensus 240 eLaete-HgreflaQeglIdlicnIIsGadsdPfekfral--------------------mgfgkffgkeaimdvsee-a 297 (524)
T KOG4413|consen 240 ELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRAL--------------------MGFGKFFGKEAIMDVSEE-A 297 (524)
T ss_pred HHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH--------------------HHHHHHhcchHHhhcCHH-H
Confidence 998874 788888889999999988865433222222111 111122221110 00001 1
Q ss_pred HHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCc--hHH-HHHHhccC
Q 000133 1504 ALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQV--IGP-LIRVLGSG 1580 (2100)
Q Consensus 1504 A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~--i~~-Lv~lL~s~ 1580 (2100)
.++++-. +++.........+++.+..|..++|.|..+.+-+..+.+.|- -.. |.+..+.+
T Consensus 298 icealii-----------------aidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 298 ICEALII-----------------AIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHHHH-----------------HHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 1222211 133344556778899999999999999887666655554332 222 33333444
Q ss_pred CHHHHHHHHHHHHHhhcC---ChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHHHH
Q 000133 1581 IHILQQRAVKALVSIALT---WPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRL 1657 (2100)
Q Consensus 1581 ~~~vr~~Al~AL~~Ls~~---~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv~l 1657 (2100)
...-++.++.||.+++.. +++++.+......+-.+.++ ..+++.. -.+...+...
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd------------------aaaqstk----ldPleLFlgi 418 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD------------------AAAQSTK----LDPLELFLGI 418 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH------------------HHhhccC----CChHHHHHHH
Confidence 445577888888888853 44455443233333333333 1111110 1355666777
Q ss_pred hhcCCHHHHHHHHHHHHHhccC
Q 000133 1658 LRSGSEGTVIGSLNALLVLESD 1679 (2100)
Q Consensus 1658 l~~~~~~~~~~a~~aL~~L~~~ 1679 (2100)
++...++++.++...+..+...
T Consensus 419 lqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HcCCChhhHHHHHHHHHHHHcC
Confidence 7777899999999888766543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0068 Score=76.97 Aligned_cols=393 Identities=16% Similarity=0.103 Sum_probs=210.0
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
.-|.++|++..+....++.-.-++-+++..+... ..|..|.-..+.+.++++-.---|..-+..+++. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--A--- 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--A--- 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--e---
Confidence 3466777777665433333333333344433222 2444566666677777766555555545444432 0
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
.=-|..+-+-|+++++-+|.-|..+|..+=- +-. .-| .+-.+-+...+.++-+|..|+.|+-.|-...++.+.
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~I-aPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMI-API----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhH-HHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 1135666677778887777755555554421 110 000 111222344566788888888888877766555554
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc---cC--
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSV---VS-- 592 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~---~~-- 592 (2100)
. .+..+-.||.+.++.+...|..+.-..|-+.-. +....|..++.+-+.=-+...+..|-.-+.. .+
T Consensus 180 q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 180 Q-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred H-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 3 234444566677777777776666665543211 2223333333221111112222222221110 00
Q ss_pred -------------chh---HHHHhhhccchHHHHH----HHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHH
Q 000133 593 -------------FSD---ILREGSAANDAVETMI----KILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSV 652 (2100)
Q Consensus 593 -------------~~~---~~~~~i~~~~~i~~Lv----~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~L 652 (2100)
.++ .++.-+....-+..|+ .++.+.++.+-.++|.+.+.++..++ ..+++.+|
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaL 327 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKAL 327 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHH
Confidence 000 0000001111133333 46788899999999999999996532 22568999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH-HH-hCCCCHH-HHHHHHHHHHHHhcCcHHHHHHHH
Q 000133 653 MKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VL-AGSPVLE-VAEQATCALANLILDSEVSEKAIA 729 (2100)
Q Consensus 653 v~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv-~l-l~~~~~e-vr~~aa~aL~~L~~~~~~~~~~v~ 729 (2100)
+++|++.. .++.-.++.+..++...+ +.+.+-+ .. +.+.++. ++..-...|.+|+......
T Consensus 328 vrLLrs~~-~vqyvvL~nIa~~s~~~~----------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~----- 391 (968)
T KOG1060|consen 328 VRLLRSNR-EVQYVVLQNIATISIKRP----------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS----- 391 (968)
T ss_pred HHHHhcCC-cchhhhHHHHHHHHhcch----------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----
Confidence 99998876 478888888888764332 2222222 21 2334443 4555666777776433322
Q ss_pred cCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCC
Q 000133 730 EEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 809 (2100)
Q Consensus 730 ~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~ 809 (2100)
.++.-|-.+.++.+......+.+|+.+....... ...-++..|+.++++.++.|+ .++...+-.|+....
T Consensus 392 -~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--------v~~tCL~gLv~Llsshde~Vv-~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 392 -EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--------VTDTCLNGLVQLLSSHDELVV-AEAVVVIKRLLQKDP 461 (968)
T ss_pred -HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--------hhhHHHHHHHHHHhcccchhH-HHHHHHHHHHHhhCh
Confidence 3566677777777776666666777666543332 224567778888887766666 666665555554444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.011 Score=72.68 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=171.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcc---CccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNN---EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
+..++.+|+++++.+|.+|+...+.|..- +.+ .+.+...|. .|.+-|....+++.-....+++.+.+...-...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 44567788999999999998887776532 111 123333333 366778888888887777777777543322222
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
..--.|.+|.|.-.|++...+++++....++.+|..+++. |+-+ ..---|++.|++.+.++++.|..+++.++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 2223578999999999999999999999999999876652 1111 012357888899999999999999999876
Q ss_pred CCCC-CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 556 KSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 556 ~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
.-.| ..+..|+.-|+..+...|....-+++.++.... ....+|.|..=-..+...+|.-...+++.++.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg----------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG----------PFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC----------chhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 4322 333334444444444455554445554443221 11235666555556778888888888888775
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 635 TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 635 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
.-.. ...=.-..+.|.|-..+.++++..+..|+..+..|+-+.+
T Consensus 830 yig~-~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 830 YIGQ-ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHH-HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 4211 1111122468888899999999999999999998876543
|
|
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-06 Score=87.22 Aligned_cols=88 Identities=31% Similarity=0.487 Sum_probs=68.8
Q ss_pred CCCceeeeeccchhhhhh--CCCcceEEEecCC--C---CCccccccccCCCccccccceeccccC-CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGN--T---PPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..|+...- |....|.++.+.. + ..++|+|+.++.||+|||.|.|.+... .....|++.|+++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 378999999999998643 3466788887753 2 257899999999999999999887532 2344999999999
Q ss_pred CccCCccc-ceEEEEEe
Q 000133 2050 SKMGKSSF-GKVTIQID 2065 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~ 2065 (2100)
+.|+++.+ |.|.|.+.
T Consensus 94 ~~~~~~~~iG~v~l~~~ 110 (138)
T cd08408 94 RKMKRKEMIGWFSLGLN 110 (138)
T ss_pred CCCCCCcEEEEEEECCc
Confidence 88876654 99888765
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.31 Score=68.81 Aligned_cols=584 Identities=17% Similarity=0.131 Sum_probs=284.9
Q ss_pred HHHHHHHHHhccCCCCcccccchhccCChHH--HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHH
Q 000133 114 AAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV--LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILV 191 (2100)
Q Consensus 114 ~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~--L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv 191 (2100)
+|+.|+..|+. +...-..+...|.-|. |...+..+..... ....+.++-+.+...+ ..... ...--+..++
T Consensus 97 ac~~a~~wia~----~~~~~~~~~~l~~~~~al~~n~~sk~~~~~~-c~~a~a~i~~~~~~~~-~~~~~-l~~~~~~lll 169 (2710)
T PRK14707 97 ACMEAIAWIAG----ELTQADDLVGLGGYPSALFLNAFSKNLDSGR-CERAVARLARHLRRED-KARQT-LNAQNISLAL 169 (2710)
T ss_pred HHHHHHHHHHH----hhcCcchhhhccchhHHHHHHHHhcCCCchH-HHHHHHHHHHHhcccc-chhhh-hccccHHHHH
Confidence 45667777665 1111222445555443 4444444433322 3334444444443222 11111 1112234444
Q ss_pred HhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhC
Q 000133 192 KLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS 269 (2100)
Q Consensus 192 ~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~ 269 (2100)
...+. ++.+.+..+..+-..++..+ ..+..+ +..+|..++.-+..=++..-...|+..|...-...+..+.. .+.
T Consensus 170 NafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~ 246 (2710)
T PRK14707 170 NAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKP 246 (2710)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CCh
Confidence 44443 45566666655554454443 233333 66777777777766444334556666665544434333333 344
Q ss_pred CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccC
Q 000133 270 NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE 349 (2100)
Q Consensus 270 g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~ 349 (2100)
.++...+..|..=. +....++++.+|..--.. ++..
T Consensus 247 q~va~~lN~lsKwp--------~~~~C~~a~~~lA~rl~~-------------~~~l----------------------- 282 (2710)
T PRK14707 247 QELGNALNALSKWA--------DTPVCAAAASALAERLVD-------------DPGL----------------------- 282 (2710)
T ss_pred HHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHhh-------------hHHH-----------------------
Confidence 45665566554321 123444555554421110 1110
Q ss_pred CCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHH-HHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 000133 350 STKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA-SLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLC 428 (2100)
Q Consensus 350 ~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~-~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~ 428 (2100)
+..+++..+...|-.+-+-.... +-..|+..|+ .|.+.++.++.+...+.-..|-.+-+-++..+.+.|+.+|..-.
T Consensus 283 -~~al~~q~vanalNalSKwpd~~-vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 283 -RKALDPINVTQALNALSKWADLP-VCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred -HHhcCHHHHHHHHhhhhcCCCch-HHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 11234444444444444433333 4444555555 45788888877766666666666666666667777777777644
Q ss_pred ccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHH
Q 000133 429 NNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSAS 506 (2100)
Q Consensus 429 ~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~ 506 (2100)
...+..++.+- ..++...+..+. =++..+...|+..|..=..++++.+..+-. .++..+++.|.. ++..+...++.
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHH
Confidence 44466555553 345555555554 344444445555555433356666655544 456666665543 56667777777
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHH-HHHhcCC------CCCcHHHHHHHhhcCCcchHHH
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTL-NHLIHKS------DTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL-~~L~~~~------~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
+|.--..++.+.+..+--.++...|=.+-+=++..+-..++..| ..|+... ++..+..-+..|. .-|+ +..
T Consensus 439 ~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLS-K~Pd-~~~ 516 (2710)
T PRK14707 439 ALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLS-KWPD-TPI 516 (2710)
T ss_pred HHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhh-cCCC-cHH
Confidence 77666556677776654444333333333334444444444444 4555422 1111111122221 1122 123
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD- 657 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~- 657 (2100)
+.+++..++.....+......+. ...+..+++ +-+.++....+.|+..|..+....+..+.. ...-.|..+++.|+
T Consensus 517 c~~A~~~lA~rl~~~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLSK 594 (2710)
T PRK14707 517 CAEAASALAERVVDELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALSK 594 (2710)
T ss_pred HHHHHHHHHHHhccchhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhcc
Confidence 34444444332222221222221 122334444 446677777777777888776654333333 33456777777773
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH-HHhCCCCHHHHHHHHHHHHHHh-cCcHHHHHHHHcCcHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILP 735 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv-~ll~~~~~evr~~aa~aL~~L~-~~~~~~~~~v~~~~v~~ 735 (2100)
-++....+.++..|..-....++. +..+ ....+..++ .+-+.+..+.-+.++..|..-. .+......+-.-++-..
T Consensus 595 WP~~~aC~~Aa~~LA~~l~~~~~l-r~~l-~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~ 672 (2710)
T PRK14707 595 WPDTAVCAEAVNALAERLVDEPDL-RKEL-DPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANA 672 (2710)
T ss_pred CCCcHHHHHHHHHHHHHhccChhh-hhhc-cHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHH
Confidence 334344455555554444443222 1212 223334444 4455566666677777766543 33333333333344444
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
|-.+.+=.+.+.-+.|+..|...+..
T Consensus 673 LNALSKWPe~e~Cr~Aa~~LA~rLa~ 698 (2710)
T PRK14707 673 LNALSKWPDTPVCAAAAGGMAERLAA 698 (2710)
T ss_pred HHhhhcCCCchHHHHHHHHHHHHHhc
Confidence 44555555666656677677655544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0053 Score=81.35 Aligned_cols=560 Identities=14% Similarity=0.107 Sum_probs=310.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHhhcchh-hhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1232 AVSQLVAVLRLGGRGARYSAAKALESLFSADH-IRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1232 al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
.+..++..++..+...|.++..-+.+++.... .+. ....+|-+-+.. +...+...+++.-++.+...-....+.
T Consensus 83 ~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~- 157 (759)
T KOG0211|consen 83 PIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYA- 157 (759)
T ss_pred cHHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHH-
Confidence 34555555555555566666655666554221 111 344567776666 555667777777777766432222221
Q ss_pred HhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcC-cchHHHHHhhcChHHHHHHHhcCCc-hHHHHHHHHHHHhcc-
Q 000133 1311 ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN-TRIRSTVAAARCVEPLVSLLVTEFS-PAQHSVVRALDKLVD- 1387 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~-~~~r~~~~~~~~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~- 1387 (2100)
..+.+..+.+.......+++.+...+..+... +.-. ...-..+++..+..++. ..|..++........
T Consensus 158 -----~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~----~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~ 228 (759)
T KOG0211|consen 158 -----HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEK----LREHLVPLLKRLATGDWFQSRLSACGLFGKLYVS 228 (759)
T ss_pred -----HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH----HHHHHHHHHHHccchhhhhcchhhhhhhHHhccC
Confidence 33444444443333445677777666555332 2110 11112233333333322 234555555555442
Q ss_pred -c-HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHH
Q 000133 1388 -D-EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1465 (2100)
Q Consensus 1388 -~-~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL 1465 (2100)
. ...+ ...-+..-++-++.++.||+.+..=++.+++.- .......+.++..+.+..++.+.++..+.+.+
T Consensus 229 ~~~~~vk-----~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~ 300 (759)
T KOG0211|consen 229 LPDDAVK-----RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESL 300 (759)
T ss_pred CChHHHH-----HHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHH
Confidence 1 2222 222344445556888999999999999988764 23677788999999999999999999998888
Q ss_pred HHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHH
Q 000133 1466 RILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQ 1545 (2100)
Q Consensus 1466 ~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~ 1545 (2100)
..+...-.... .......+.++....+++ +.++....+...-+...-+. ......-+++....+++...+++.
T Consensus 301 ~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~~~~~~----~~~~~~~~~~~~~l~~~~~~e~r~ 373 (759)
T KOG0211|consen 301 VSLLDLLDDDD-DVVKSLTESLVQAVEDGS--WRVSYMVADKFSELSSAVGP----SATRTQLVPPVSNLLKDEEWEVRY 373 (759)
T ss_pred HHHHHhcCCch-hhhhhhhHHHHHHhcChh--HHHHHHHhhhhhhHHHHhcc----ccCcccchhhHHHHhcchhhhhhH
Confidence 77765443221 334456777777777544 44444444444444222111 124455688899999999999999
Q ss_pred HHHHHHHHhhccc--cccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCC
Q 000133 1546 LAAELLSHLLLEE--QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPS 1622 (2100)
Q Consensus 1546 ~a~~aL~~l~~~~--~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~ 1622 (2100)
+++.-...+.... +....+.....++.+..+..+.++.+|.+.+.-...++..-+. .-+.+ ..+.++..+.+.++.
T Consensus 374 a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~-llp~~~~~l~de~~~ 452 (759)
T KOG0211|consen 374 AIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISE-LLPLLIGNLKDEDPI 452 (759)
T ss_pred HhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccc-cChhhhhhcchhhHH
Confidence 9999988886632 2334455556678888888999999999998888887644332 11111 244555555555544
Q ss_pred chHHHHHHHHHHHHhhhcccch----hhhcccHHHHHHHhhcCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHH
Q 000133 1623 LPHALWESAASVLSSILQFSSE----FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLE 1698 (2100)
Q Consensus 1623 ~~~~l~e~a~~~L~~i~~~~~~----~~~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~ 1698 (2100)
++..+. ..++.+-...+. ...+.-+|.++.+.....+.++.+.+..+-.++.... ..+.... ...|+.
T Consensus 453 V~lnli----~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~-~~~l~~ 524 (759)
T KOG0211|consen 453 VRLNLI----DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK-LAELLR 524 (759)
T ss_pred HHHhhH----HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH-HHHHHH
Confidence 443332 233332221111 1222346666666666666777777766655543332 1111111 222222
Q ss_pred -HHhc--cCcHHHHHHHHHHHhc---CchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcchhhhhhHHHhhhh
Q 000133 1699 -LLRS--HQCEETAARLLEVLLN---NGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADA 1772 (2100)
Q Consensus 1699 -lL~s--~~~~~~a~~lL~~L~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~~~~~~~l~~~~~~ 1772 (2100)
.+.+ ..+++.+++-+..|+. ..-.+. ..+..+.....++....+++-+.++..++..--++ ++ .
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~----~ 594 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-IT----C 594 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HH----H
Confidence 2222 1367777666666654 111111 11222222222222333333223333333222222 22 1
Q ss_pred hchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHH
Q 000133 1773 VSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKL 1843 (2100)
Q Consensus 1773 ~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~ 1843 (2100)
.-.++++..+..+. ...+|-+++..|..+... -.....+.-+.+.+..+..+.+.+.+..|-.+...
T Consensus 595 ~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 595 EDLLPVFLDLVKDP-VANVRINVAKHLPKILKL---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred HHHhHHHHHhccCC-chhhhhhHHHHHHHHHhh---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 12366677766664 899999999999999832 22356666778888888887777777655555444
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=72.46 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=110.7
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 400 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 400 g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
+.+..|+.-.+ ..+.+.++....-|+|.+.+ +.++..+.+..++..+++-+..++..+.+.+.+.|||+|. ++.+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 34455655444 56889999999999999998 7889999999999999999999999999999999999995 788999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 536 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 536 (2100)
.|.+++|+|.++..+.++...+.-.++.++..|+...-..|..+.. |+.++.++
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 9999999999999999999999999999999998765566666544 55555544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=78.32 Aligned_cols=91 Identities=29% Similarity=0.507 Sum_probs=74.2
Q ss_pred CceeeeeccchhhhhhC--CCcceEEEecCCC--CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-C
Q 000133 1980 TLVVIIKRGNNMKQSVG--NPSVYCKLTLGNT--PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-K 2054 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2054 (2100)
+|.|+|+...++...-. ....++++..+.. ..++|+++.++.+|.|++.|.|.+..+. ++.+.|+|+++..+| .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCC
Confidence 36788888887766543 4678889998766 5899999999999999999999887444 999999999988886 6
Q ss_pred cccceEEEEEeeEEeec
Q 000133 2055 SSFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2055 ~~~~~~~~~~~~~~~~~ 2071 (2100)
..+|.+.|.++++..+.
T Consensus 80 ~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 80 DFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ceeEEEEEEHHHcccCc
Confidence 67799999988875543
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.018 Score=65.96 Aligned_cols=279 Identities=15% Similarity=0.149 Sum_probs=165.4
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc----hhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVS----VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
.|.|-.-|..++..++.-+|+.+.++..+... ....+++.+..+.++..+...++ ++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd-eVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD-EVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHh-cHHH
Confidence 44555556678899999999999888855442 23344688999999999998664 799999999999987 5666
Q ss_pred HHHHHhCCChHHHHHh-hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 263 RREIAGSNGIPAMINA-TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~l-l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
-.+|.+..-.+.+-.. +. -.++.-.+......+..+..
T Consensus 162 leaiFeSellDdlhlrnla--------akcndiaRvRVleLIieifS--------------------------------- 200 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLA--------AKCNDIARVRVLELIIEIFS--------------------------------- 200 (524)
T ss_pred HHHhcccccCChHHHhHHH--------hhhhhHHHHHHHHHHHHHHh---------------------------------
Confidence 5566555444332111 00 00111111111122222221
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc--CCCHHHHHH
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--MATNEVQEE 419 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~ 419 (2100)
-+.+...-+..++....|..-++.+.+..|+..+.+-.-.|+...+.+.++.+.|.+..+-..+. +.+|--...
T Consensus 201 ----iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr 276 (524)
T KOG4413|consen 201 ----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR 276 (524)
T ss_pred ----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH
Confidence 11111111233455666666666666777777777777778777788899999998888877775 345544555
Q ss_pred HHHHHHHhhccCccc---hHHHHhC--CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCC--hHHHH-H
Q 000133 420 LVRALLKLCNNEGSL---WRALQGR--EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGG--IPPLV-Q 491 (2100)
Q Consensus 420 A~~aL~~L~~~~~~~---~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~--i~~Lv-~ 491 (2100)
+......+..+..-+ -+++.+. -+|....+.+++.+++.++.|..+++.+.+ +.+..+.+...|- ...++ +
T Consensus 277 almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllar 355 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLAR 355 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHH
Confidence 555555444331111 1222221 134455667788999999999999999986 6666666655542 22222 2
Q ss_pred hccCCCHHHHHHHHHHHHHHhc
Q 000133 492 ILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 492 lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
........-++.+..+|.+++.
T Consensus 356 afdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 356 AFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HhcccccchHHHHHHHHHHhhc
Confidence 2222223345566677777764
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.001 Score=74.55 Aligned_cols=258 Identities=18% Similarity=0.186 Sum_probs=172.1
Q ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHH
Q 000133 1233 VSQLVAVLRLGGR--GARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310 (2100)
Q Consensus 1233 l~~Li~~L~~~~~--~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~ 1310 (2100)
++.+..+|-+.+. ..|+.| |++| ..+...+.|..+...+.+.+.-.++..++.|++..
T Consensus 5 i~~i~~~L~~~s~~l~~r~rA---Lf~L-------r~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~---------- 64 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRA---LFNL-------RNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQ---------- 64 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHH---HHhh-------hccCChHHHHHHHHhcccchhhhccchhhhhhhhc----------
Confidence 4455555555432 345555 4443 12334445777777777776666777888888877
Q ss_pred HhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccH
Q 000133 1311 ADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDE 1389 (2100)
Q Consensus 1311 ~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~ 1389 (2100)
...+++.|...|.+. ...-++.++..+|+.+. . +...+.+-+..+++...+++.+..++.++-+..
T Consensus 65 ---~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 65 ---DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ---cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 456788888888765 33456778888887765 2 224455555566777777887777777665211
Q ss_pred HHHH----HH---------HhcCCHHHHHHhhcCCCh--hHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCC
Q 000133 1390 QLAE----LV---------AAHGAVIPLVGLLYGRNY--MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAP 1454 (2100)
Q Consensus 1390 ~~~~----~~---------~~~g~i~~L~~lL~~~~~--~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~ 1454 (2100)
.... .. ...+-+..|-..|.+.+. --|..|.-.|.+++... .|..+++-+..++
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~~~S 200 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLADDS 200 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcccch
Confidence 1000 00 011224445444443332 34667777888887775 7888999999888
Q ss_pred hhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhh
Q 000133 1455 DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIP 1534 (2100)
Q Consensus 1455 ~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~ 1534 (2100)
.-.+++++-.++.|- ... .++.|...|.+..+.+-+++.|.++|+.+ .....++.|..
T Consensus 201 alfrhEvAfVfGQl~---s~~-------ai~~L~k~L~d~~E~pMVRhEaAeALGaI------------a~e~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQ---SPA-------AIPSLIKVLLDETEHPMVRHEAAEALGAI------------ADEDCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhcc---chh-------hhHHHHHHHHhhhcchHHHHHHHHHHHhh------------cCHHHHHHHHH
Confidence 888999886654433 222 47888888887667799999999999984 77788999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhc
Q 000133 1535 LLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1535 ~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
++.++.+.|++.+.-+|.-+.-
T Consensus 259 ~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.7e-05 Score=80.79 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=64.4
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEec---C-CCCCccccccccCC-CccccccceeccccCCCCC-eEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTL---G-NTPPRQTKIVSTGP-NPEWEESFAWSFEIPPKGQ-KLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~---~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 2049 (2100)
+|.|||+|++..|++.. .+...-+.++.+ | .-..|+|+|++.+. +|.|||.|.|++.. +.-+ .|.|+|+++
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc-hhheeEEEEEEEeC
Confidence 68899999999999874 122234554433 2 22467899999885 69999999998874 3334 889999999
Q ss_pred CccCCcc-cceEEEEEee
Q 000133 2050 SKMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~ 2066 (2100)
+.+|++- +|+|.+-++.
T Consensus 92 ~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 92 SSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCcCCceEEEEEECCcc
Confidence 8886654 6999887764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.016 Score=75.91 Aligned_cols=238 Identities=19% Similarity=0.194 Sum_probs=155.7
Q ss_pred ccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchh---hhHHHhcCcHHHHHHHHhcCCc--c-hHHHH---HHHHHH
Q 000133 1145 KAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSN---KIVMVEAGALEALTKYLSLGPQ--D-ATEEA---ATDLLG 1215 (2100)
Q Consensus 1145 ~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~---r~~i~e~G~i~~L~~~L~s~~~--~-~~~~~---~~~ll~ 1215 (2100)
..+...+.+|+...|.+ +..++-+++.+.+.++.+ +..+.++=+.+.|-++|+++.. + .+..+ +-.++.
T Consensus 5 ~~l~~c~~lL~~~~D~~--rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTE--RFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhccCCcHH--HHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45667788888765544 588999999999887743 4457788888999999998521 1 12223 333555
Q ss_pred HhhcCHHHHhhhcccCcHHHHHHHHhcCCH-HHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHH
Q 000133 1216 ILFSSAEIRRHESAFAAVSQLVAVLRLGGR-GARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIA 1294 (2100)
Q Consensus 1216 ~l~~~~~~~~~~~~~~al~~Li~~L~~~~~-~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~ 1294 (2100)
.+..+++......-.+.||.|+.++...++ ..-..+...|..++..++.+..+.+.|+++.|.+.+.. .......|+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 555778776655556789999999988877 77788888899999999999999999999999999987 4456677999
Q ss_pred HHHHhhcCCchhhHHHH-hhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH--HHHHhhcChHHHHHHH----
Q 000133 1295 ALVRLLSENPSRALAVA-DVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIR--STVAAARCVEPLVSLL---- 1367 (2100)
Q Consensus 1295 aL~~La~~~~~~~~~~~-~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r--~~~~~~~~i~~Lv~lL---- 1367 (2100)
.|.++..........-. .--..+++.+-+.+... ....+=+....|..+....+.. ...........+...+
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99888764331110000 00012445555555543 4456666677777776665321 2222334444444433
Q ss_pred hc-CCchHHHHHHHHHHHhc
Q 000133 1368 VT-EFSPAQHSVVRALDKLV 1386 (2100)
Q Consensus 1368 ~~-~~~~~~~~A~~aL~~L~ 1386 (2100)
++ ..+..|..|+.....+.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 33 44566666665555544
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.6e-05 Score=79.86 Aligned_cols=83 Identities=14% Similarity=0.321 Sum_probs=62.1
Q ss_pred eeccchhh--hhhCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCC---CCCeEEEEeecCCccCC
Q 000133 1985 IKRGNNMK--QSVGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1985 ~~r~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 2054 (2100)
+++..++. ..+|.+.-++++.+++. ..++|+|++++.+|+|+ .|.+..+... .+++|.|+|++++.||+
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 34566664 33555667777776543 25789999999999999 6776544322 26799999999999987
Q ss_pred -cccceEEEEEeeEE
Q 000133 2055 -SSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2055 -~~~~~~~~~~~~~~ 2068 (2100)
+.+|+++++++++.
T Consensus 85 d~~iG~~~~~l~~l~ 99 (110)
T cd04047 85 HDLIGEFETTLDELL 99 (110)
T ss_pred CcEEEEEEEEHHHHh
Confidence 55699999999998
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-05 Score=80.13 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=76.8
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEe-ecCCcc---
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC-KNKSKM--- 2052 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 2052 (2100)
+--+|.|.|.-..++-- -...+|.+++|...-=.|+|++++.||.|+|.|.|..- || =..+.|.+ |..+++
T Consensus 9 ~~~sL~v~V~EAk~Lp~---~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~-~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 9 TENSLKLWIIEAKGLPP---KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNL-PP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEEccCCCC---cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCC-Cc-ccEEEEEEEEccCccccc
Confidence 33456777776666532 24689999997654337999999999999999999533 33 46688888 444444
Q ss_pred -CCcccceEEEEEeeEEeecccccceeecCCCCC
Q 000133 2053 -GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKS 2085 (2100)
Q Consensus 2053 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2085 (2100)
|..-+|+|+|++++|.......+-|.|.+.+++
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~ 117 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN 117 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence 446779999999999987778888999888433
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.015 Score=74.87 Aligned_cols=472 Identities=15% Similarity=0.116 Sum_probs=284.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
.+-++..+...|-+.++.+-.-+.|-+...+.. ..+++..+++=.+++++.+|..|.+.++.+.- +.....
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey-- 121 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEY-- 121 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHH--
Confidence 455677777888888888877888888776653 12566777777778899999877777766642 222222
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-- 559 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-- 559 (2100)
...+|.+.+++.++.+|..++....++-.. ....+.+.|.++.|-+++.+.++.+...|..+|..+.....+
T Consensus 122 ---~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 122 ---LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred ---HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 567899999999999999999999888754 344566799999999999999999999999999998765431
Q ss_pred ------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 560 ------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 560 ------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
..+..++..+.....--+.. .|..++.-.+.++ + .....+..+...|.+.+..+.-.+...+.++.
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p~d~--~---ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVPKDS--R---EAEDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCCCCc--h---hHHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 22333444443332222333 3333333332222 0 01123666777888888888888888888888
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh--CC-CCHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA--GS-PVLEVAEQA 710 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll--~~-~~~evr~~a 710 (2100)
..-++ .........-++|+.++...+ +++.-+.+-+.-+..+.++..+. -+..+ +. ...-++..-
T Consensus 268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~----------~~~~Ff~kynDPiYvK~eK 335 (734)
T KOG1061|consen 268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKV----------EIKVFFCKYNDPIYVKLEK 335 (734)
T ss_pred HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHh----------HhHeeeeecCCchhhHHHH
Confidence 76444 333444578899999998877 77777776666554444322111 11111 11 222256666
Q ss_pred HHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccc
Q 000133 711 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASG 790 (2100)
Q Consensus 711 a~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~ 790 (2100)
...+..++.+....+ ++.-|..+...-+.+..+.+.+|+.++..-... ..+++..++++++...+
T Consensus 336 leil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e~---------~~~cv~~lLell~~~~~ 400 (734)
T KOG1061|consen 336 LEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ---------SNDCVSILLELLETKVD 400 (734)
T ss_pred HHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh---------hhhhHHHHHHHHhhccc
Confidence 666666654433222 444444444445556788999999988743332 26678888888887666
Q ss_pred ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhccccccc
Q 000133 791 SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASG 870 (2100)
Q Consensus 791 ~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~ 870 (2100)
-++ .++...+..+.+..++ ....+-...+..++ .-.+|..+..-.+++.++... |..
T Consensus 401 yvv-qE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~------sl~epeak~amiWilg~y~~~--------i~~--- 457 (734)
T KOG1061|consen 401 YVV-QEAIVVIRDILRKYPN-----KYESVVAILCENLD------SLQEPEAKAALIWILGEYAER--------IEN--- 457 (734)
T ss_pred cee-eehhHHHHhhhhcCCC-----chhhhhhhhccccc------ccCChHHHHHHHHHHhhhhhc--------cCc---
Confidence 666 7788888888766554 11122233333333 224688888888899888321 111
Q ss_pred chHHHHHHHhhcCCcceecchhhHHHHHhhhchhhHHhhhhc-cccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHh
Q 000133 871 CISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNH-SNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIY 949 (2100)
Q Consensus 871 ~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l 949 (2100)
...+++-|++---.+. +.-|+-.+... +...-. .+.+...+..+... .-.+ +.++|.+..++.--
T Consensus 458 -a~elL~~f~en~~dE~---~~Vql~LLta~-----ik~Fl~~p~~tq~~l~~vL~~---~~~d--~~~~dlrDr~l~Y~ 523 (734)
T KOG1061|consen 458 -ALELLESFLENFKDET---AEVQLELLTAA-----IKLFLKKPTETQELLQGVLPL---ATAD--TDNPDLRDRGLIYW 523 (734)
T ss_pred -HHHHHHHHHhhcccch---HHHHHHHHHHH-----HHHHhcCCccHHHHHHHHHhh---hhcc--ccChhhhhhHHHHH
Confidence 2234555544432222 22233333333 221111 11223333333222 2211 24678888888888
Q ss_pred hhhcccccCCC
Q 000133 950 RYTSEEARNGG 960 (2100)
Q Consensus 950 ~~l~~~~~~~~ 960 (2100)
+.|++-.+.+.
T Consensus 524 RlLs~~~~~a~ 534 (734)
T KOG1061|consen 524 RLLSEDPLIAK 534 (734)
T ss_pred HHhhcCHHHHH
Confidence 88775444333
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.4e-05 Score=74.58 Aligned_cols=94 Identities=23% Similarity=0.404 Sum_probs=75.4
Q ss_pred ceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC-Cccc
Q 000133 1981 LVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG-KSSF 2057 (2100)
Q Consensus 1981 ~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 2057 (2100)
|.|.|++..++.. ..+..+.++.+.+.+....+|++...+.+|.|++.|.|.+.. +.++.++|++++++.++ ...+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~-~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD-PESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccC-CCCCEEEEEEEecCCCCCCcee
Confidence 4678888888765 333467889999987677889999999999999999998884 37889999999999887 6667
Q ss_pred ceEEEEEeeEE-eeccccc
Q 000133 2058 GKVTIQIDRVV-MLGAVAG 2075 (2100)
Q Consensus 2058 ~~~~~~~~~~~-~~~~~~~ 2075 (2100)
|++.+++..+. ..+....
T Consensus 80 g~~~~~l~~l~~~~~~~~~ 98 (102)
T cd00030 80 GEVEIPLSELLDSGKEGEL 98 (102)
T ss_pred EEEEEeHHHhhhcCCcCcc
Confidence 99999999887 3333333
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0013 Score=84.39 Aligned_cols=243 Identities=16% Similarity=0.097 Sum_probs=179.4
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHH-HHhcCC--CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN-HLIHKS--DTATISQLTALLTSDLPESKVYVLDALKSMLSVVS 592 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~-~L~~~~--~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~ 592 (2100)
...+...++.|+...|+.+...+.+..+-.+..+|. .+...+ ....++++..++..+..... -.++|-.+...++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~e--n~E~L~altnLas 571 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSYEVVKPLDSALHNDEKGLE--NFEALEALTNLAS 571 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHH--HHHHHHHhhcccC
Confidence 456677788999999999999999999999999987 443333 23667777777665553322 2344444554555
Q ss_pred chhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCCCHHHHHHHHHHH
Q 000133 593 FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVGSECILVEASRCL 671 (2100)
Q Consensus 593 ~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~aa~aL 671 (2100)
.++..+..+....+++.+-.++...++..|+.+...+.||.+++.-+...+.. ...++.+...+....+....++++++
T Consensus 572 ~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~ 651 (748)
T KOG4151|consen 572 ISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGAL 651 (748)
T ss_pred cchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccc
Confidence 44444444666777888888899999999999999999999984444444444 34788888888888888888999888
Q ss_pred HHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCcHHHHHHHHcCcHHHHHHHHccCChhHHHH
Q 000133 672 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILPATRVLCEGTISGKTL 750 (2100)
Q Consensus 672 ~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~-~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~ 750 (2100)
..++.-....+........+...++.++.+++.++++.......|+. .+.+.+..++....++.+.++-+-.-...++.
T Consensus 652 a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~ 731 (748)
T KOG4151|consen 652 AAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKRED 731 (748)
T ss_pred cchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhh
Confidence 86655433222213445678899999999999999999999999966 45778888888889988888777755567888
Q ss_pred HHHHHHHHHh
Q 000133 751 AAAAIARLLH 760 (2100)
Q Consensus 751 Aa~aL~~l~~ 760 (2100)
++.+|.....
T Consensus 732 ~~~~l~~a~~ 741 (748)
T KOG4151|consen 732 AAPCLSAAEE 741 (748)
T ss_pred hhhHHHHHHH
Confidence 8888876653
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00046 Score=85.43 Aligned_cols=242 Identities=15% Similarity=0.100 Sum_probs=155.2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH-HH----
Q 000133 1363 LVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL-EM---- 1437 (2100)
Q Consensus 1363 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~-~i---- 1437 (2100)
|..+..+.|..+|.+|+++|..|...-..- .-+....++.+.+.+..||.+|+..+.-.+.-.|--.+ ..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 556667788899999999988887411111 11356788999999999999999988877765421111 11
Q ss_pred HhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhh-----
Q 000133 1438 VKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNIL----- 1512 (2100)
Q Consensus 1438 ~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~----- 1512 (2100)
....+...+.+.+.+.+-.+|-.|+++|++..+.+... ..+.|=.-+.+..--+-..+...+.++.=.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~-------i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI-------IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH-------HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 22457778888888888888999999987776555422 111111111110000111111222222111
Q ss_pred ----cC----CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcc-ccccccccccCchHHHHHHhccCCHH
Q 000133 1513 ----EH----PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIRVLGSGIHI 1583 (2100)
Q Consensus 1513 ----~~----~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~-~~~~~~l~~~g~i~~Lv~lL~s~~~~ 1583 (2100)
.+ ..+.....+...|+-+.++.-|.++.-+||.+|+..+..|+.+ +.+. ..++..|+.|+++..++
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEV 425 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHH
Confidence 00 0111223357888899999999999999999999999999873 3332 25678999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCch
Q 000133 1584 LQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLP 1624 (2100)
Q Consensus 1584 vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~ 1624 (2100)
+|..|+.+|..|+..- -+++..++.+++.|.+....++
T Consensus 426 VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL---AIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998762 2333345566666665443333
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=69.95 Aligned_cols=255 Identities=18% Similarity=0.136 Sum_probs=170.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhh
Q 000133 1191 LEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA 1270 (2100)
Q Consensus 1191 i~~L~~~L~s~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~ 1270 (2100)
++++.+.|... ...+.....++.+ .. .+...+++..+.....+++..-+...|..|+. +..
T Consensus 5 i~~i~~~L~~~-s~~l~~r~rALf~----Lr----~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ----------~~~ 65 (289)
T KOG0567|consen 5 IETIGNILVNK-SQPLQNRFRALFN----LR----NLLGPAAIKAITKAFIDDSALLKHELAYVLGQ----------MQD 65 (289)
T ss_pred HHHHHHHHcCc-cHHHHHHHHHHHh----hh----ccCChHHHHHHHHhcccchhhhccchhhhhhh----------hcc
Confidence 45666666652 3333333333332 11 23345668888888888877778888888876 466
Q ss_pred cCChHHHHHhhccCCh--hhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCc
Q 000133 1271 RQAVQPLVEILNTGLE--REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1348 (2100)
Q Consensus 1271 ~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~ 1348 (2100)
..++|.|+..|.+.+. -+|+.|+.+|+++. ....++.|.++.++ +-..+++.+..++..+-+-.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-------------~~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-------------DPESLEILTKYIKD-PCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-------------chhhHHHHHHHhcC-CccccchHHHHHHHHHHHhh
Confidence 7789999999987654 45667999999988 23467777787744 44556655544444332211
Q ss_pred c----------hHHHH---HhhcChHHHHHHHhcCCc--hHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCCh
Q 000133 1349 R----------IRSTV---AAARCVEPLVSLLVTEFS--PAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNY 1413 (2100)
Q Consensus 1349 ~----------~r~~~---~~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 1413 (2100)
. ...+. ...+.+..|-..|.+.+. -.|+.|..+|.++..++ +|..|.+-+..++.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADDSA 201 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccchH
Confidence 1 00111 123346666666666543 45777888888876433 47788999998899
Q ss_pred hHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhcc--CChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHh
Q 000133 1414 MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE--APDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLL 1491 (2100)
Q Consensus 1414 ~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~--~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll 1491 (2100)
-.|..+.-+|++|-... +|+.+.+.|.+ +++-+|++++++|+-+++. .+++.|...+
T Consensus 202 lfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~ 260 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYL 260 (289)
T ss_pred HHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHc
Confidence 99999999999998775 89999999975 4667999999998544432 2577777777
Q ss_pred ccCCCCchhHhHHHHHHHHh
Q 000133 1492 TRSEFGPDGQHSALQVLVNI 1511 (2100)
Q Consensus 1492 ~~~~~~~~~~~~A~~~L~nL 1511 (2100)
.++. +.+.+.+.-+|-.+
T Consensus 261 ~D~~--~vv~esc~valdm~ 278 (289)
T KOG0567|consen 261 GDEE--RVVRESCEVALDML 278 (289)
T ss_pred CCcH--HHHHHHHHHHHHHH
Confidence 7655 66677766666554
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=1.4 Score=62.83 Aligned_cols=366 Identities=18% Similarity=0.132 Sum_probs=187.1
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHH-HHhhcCHHHHhhhcccCcHHHHHHHHh-cCCHHHHHHHHHHHH-Hhhcchhhhh
Q 000133 1190 ALEALTKYLSLGPQDATEEAATDLL-GILFSSAEIRRHESAFAAVSQLVAVLR-LGGRGARYSAAKALE-SLFSADHIRN 1266 (2100)
Q Consensus 1190 ~i~~L~~~L~s~~~~~~~~~~~~ll-~~l~~~~~~~~~~~~~~al~~Li~~L~-~~~~~~r~~Aa~aL~-~L~~~~~~~~ 1266 (2100)
-+...++.||.=+.+.....+...| .-+..++..+..+ +..-|.-.+..|. -.+...-..|+.+|. .|......|.
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af-~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~ 872 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREAF-DVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRH 872 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhc-CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhh
Confidence 4555667777765554444444333 3366777776553 4444555555554 333334444555554 3333333333
Q ss_pred hhhhcCChHHHHHhhcc-CChhhHHHHHHHH-HHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCCh-hhHHHHHHHHHH
Q 000133 1267 AESARQAVQPLVEILNT-GLEREQHAAIAAL-VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM-ELKGDAAELCGV 1343 (2100)
Q Consensus 1267 ~i~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL-~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~-~~~~~a~~~L~~ 1343 (2100)
.+ .+..+...+..|.. +.....+.|+.+| ..|..+..-+..+ ++..+...+.-|+.-++. ..+..+..+..-
T Consensus 873 aL-~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal----~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~r 947 (2710)
T PRK14707 873 TL-TAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKAL----SAHRVATALNALSKWPDIPVCATAASALAER 947 (2710)
T ss_pred cc-chHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhc----cHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Confidence 33 23445555555543 3344455555555 4455343333333 455555556666554444 455555566777
Q ss_pred HhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHH-hcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 000133 1344 LFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK-LVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRA 1422 (2100)
Q Consensus 1344 L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~-L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~a 1422 (2100)
|..+++.+..+......+.|-.+-+=++...-..|+.+|.. |..+...+..+-..|+-..|-.+=+=++...-+.|...
T Consensus 948 La~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~ 1027 (2710)
T PRK14707 948 LSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEA 1027 (2710)
T ss_pred hccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHH
Confidence 88888888777666655555555555666555555555544 44677777666555555555555443444444555555
Q ss_pred HHHhhcCCchhhHHHHhcCcHHHHHHHhcc-CChhHHHHHHHHH-HHHHhccCCcccccccCchHHHHHHhccCCCCchh
Q 000133 1423 LVKLGKDRPSCKLEMVKAGVIESVLDILHE-APDFLCSAFAELL-RILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDG 1500 (2100)
Q Consensus 1423 L~~La~~~~~~k~~i~~~~~i~~lv~~L~~-~~~~~~~~aa~lL-~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~ 1500 (2100)
|..--..++.....| +.-.+...+.-|+. ++.+.+..++..| ..|......+... ....+...+.-|.+=.+.++.
T Consensus 1028 LA~rLa~ep~L~~am-daQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al-~aQ~vAN~LNaLSKWP~~~~C 1105 (2710)
T PRK14707 1028 LAARLSNDPGLCKAL-SSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNAL-DSQGFGNALNALSKWPDSPVC 1105 (2710)
T ss_pred HHHHhccCHhhhhhc-chHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhh-chHHHHHHHHHHhcCCCcHHH
Confidence 554433334444333 22245566666664 2333444444443 2233333322111 222344444445433233444
Q ss_pred HhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC--CCCHHHHHHHHHHHHHhhccccccccccc
Q 000133 1501 QHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD--SPAPAVQQLAAELLSHLLLEEQLQKDPVT 1566 (2100)
Q Consensus 1501 ~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~--~~~~~vq~~a~~aL~~l~~~~~~~~~l~~ 1566 (2100)
+..+......|..+..-... .+.+.+..+++.|+ .+.+..+..+...=+++..+++.+..+..
T Consensus 1106 r~Aa~~LA~rL~~~~~l~~~---fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~ 1170 (2710)
T PRK14707 1106 AAAASALAKRLTDDAGLRHV---FDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSA 1170 (2710)
T ss_pred HHHHHHHHHHhccccchhcc---CCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCH
Confidence 44344444444333333333 23334555555554 55666777777777778777777766654
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00056 Score=68.29 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=105.0
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
-+.-|+.-+...++...|+.+..-|++.+-+|.+-..+.+.+++...+..+..++....+.+..+|.|+|.+ ..+.+.|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 344456666666776678888888999999999999999999999999999999999999999999999998 5668899
Q ss_pred HhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 439 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
++++|+|..+..+.++...+...|+.+|..|+-.....+..+..
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999999999999999998655555555543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=1 Score=60.59 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=129.9
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
+.+..|++.|++.+..+|-.||.-++.+.+-.+ .-+....+...+.++.-.+ ...=+-|+-||.+++..+.--
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl--- 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL--- 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc---
Confidence 456778888899999999999999999985444 1222244555566555433 445557788899998743300
Q ss_pred ccchhccCChHHHHHHhhcc-----CCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHH-----HhHccCCHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNG-----LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILV-----KLLTLGQSSTQ 202 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~-----~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv-----~lL~s~~~~v~ 202 (2100)
.-.-..++|.++.-|.-. ...+..|+..++..+|.++...+.. .+ .+.++.|. ..+=+++..+|
T Consensus 415 --ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~---~l-~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 415 --PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS---DL-KPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred --hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh---hh-hHHHHHHHHHHHHHHhcCchhhHh
Confidence 011245677777666432 2234458888999999987544322 11 11222222 23334666789
Q ss_pred HHHHHHHHHHhhcCcch-------------------------hhHHh-hhchHHHHHHHhcCC----CCHHHHHHHHHHH
Q 000133 203 AHVCFLLACMMEEDVSV-------------------------CSRVL-AADATKQLLKLLGSG----NEASVRAEAAGAL 252 (2100)
Q Consensus 203 ~~a~~~L~~L~~~~~~~-------------------------~~~i~-~~g~i~~Lv~lL~~~----~~~~v~~~Aa~aL 252 (2100)
+.|..+|..+....+.. +..+. -+|-...+++-+-.. =|..+|+.++++|
T Consensus 489 RAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 99998888777443211 00010 123344445444332 2578999999999
Q ss_pred HHhhcCChHhHHHHHhCCChHHHHHhhcCCC
Q 000133 253 KSLSDHCKDARREIAGSNGIPAMINATIAPS 283 (2100)
Q Consensus 253 ~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 283 (2100)
.+|+...++ ....+.+|+++....+++
T Consensus 569 ~~Ls~~~pk----~~a~~~L~~lld~~ls~~ 595 (1133)
T KOG1943|consen 569 HKLSLTEPK----YLADYVLPPLLDSTLSKD 595 (1133)
T ss_pred HHHHHhhHH----hhcccchhhhhhhhcCCC
Confidence 999875443 334567888888877665
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.038 Score=71.58 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHhhccCccchHHHH----hCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQ----GREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~----~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
-...+..+|.|+...+++....+. --|-.+.+..++.. .++.++.-|..++.-++. +.+....+...+.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 346789999999988885432221 12455777777765 467888888888888874 788889999999888888
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC---------C
Q 000133 491 QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT---------A 560 (2100)
Q Consensus 491 ~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~---------~ 560 (2100)
++|. +-+..|+.+..+|+.|+. +++.-+...+.|++..+.+++-. .++..+..++..|+.|..+.-. +
T Consensus 1820 ~lLH-S~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLH-SQPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHh-cChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 8885 467889999999999998 57777788889999988888765 5677888899999999765421 1
Q ss_pred cHHH-HHHHhhcC-------------Ccc------hHHHHHHHHHHHHhcc-----C-------chh-------------
Q 000133 561 TISQ-LTALLTSD-------------LPE------SKVYVLDALKSMLSVV-----S-------FSD------------- 595 (2100)
Q Consensus 561 ~i~~-L~~lL~~~-------------~~~------~~~~a~~aL~~l~~~~-----~-------~~~------------- 595 (2100)
.+|. ++..++|+ +|+ .+......+..+..-. . .++
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 1111 22223322 222 1111111122211100 0 000
Q ss_pred ----HHHHhhhc------------cchHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc
Q 000133 596 ----ILREGSAA------------NDAVETMIKILSSTKEE--TQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 596 ----~~~~~i~~------------~~~i~~Lv~lL~s~~~~--~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
..|.-+.. .+-+..+.++|...+++ +-.--..++..|.+..+...+.+---|-+|.++....
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 00000000 11233444455443332 2333344555666666777777777899999999997
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cHHHHHHHHcCcHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD--SEVSEKAIAEEIILP 735 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~~~~~~~v~~~~v~~ 735 (2100)
..+...-+.|.+.|-.|+.+. .+-.++..-..+.++++.|+... ..---|+.+|..++.+ .+...|....+.+|.
T Consensus 2058 ~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred hcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence 666566688899999886543 45555777788888888887533 3445899999999844 556778889999999
Q ss_pred HHHHHccCC
Q 000133 736 ATRVLCEGT 744 (2100)
Q Consensus 736 L~~ll~~~~ 744 (2100)
|.+++...+
T Consensus 2135 LL~LLd~~t 2143 (2235)
T KOG1789|consen 2135 LLQLLDSST 2143 (2235)
T ss_pred HHHHhcccc
Confidence 999998754
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.059 Score=69.60 Aligned_cols=179 Identities=18% Similarity=0.153 Sum_probs=115.4
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHH-HHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAAT-VLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 131 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 131 (2100)
.|.++.+-+-|.+....-|.++++ +++.+.-+.+ -.+-.|.+++.+...|.+.+.-+--=|.+-+.+.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D------vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~----- 80 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD------VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK----- 80 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc------hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccC-----
Confidence 456777777776665566666665 5555554433 1245677788888888888776655555555521
Q ss_pred cccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh-hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE-GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~-~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.....+++.. ++.+..+..+.++..| ++.+++-.. ..+. -...++.+.+++.++.+|..++.+.+
T Consensus 81 ---P~~a~~avnt---~~kD~~d~np~iR~lA---lrtm~~l~v~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~va 146 (734)
T KOG1061|consen 81 ---PDLAILAVNT---FLKDCEDPNPLIRALA---LRTMGCLRVDKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVA 146 (734)
T ss_pred ---chHHHhhhhh---hhccCCCCCHHHHHHH---hhceeeEeehHHHH-----HHHHHHHHhccCCChhHHHHHHHHHH
Confidence 1112233333 3444444556677655 444443322 2222 23668999999999999999998887
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 260 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~ 260 (2100)
++-..+. ..+.+.|.++.|-.++.+++ +.+..+|..+|..+...++
T Consensus 147 kl~~~~~---~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 147 KLFDIDP---DLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHP 192 (734)
T ss_pred HhhcCCh---hhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCC
Confidence 7765443 55667888999999998544 5799999999999886544
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.81 Score=56.77 Aligned_cols=273 Identities=12% Similarity=0.044 Sum_probs=141.6
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
|.|-.+++..- +.|+..++.+++.++..--..+.+. ..+..|-..|+++....|-.|.+.|..|+...+.. +.
T Consensus 267 pfL~~wls~k~-emV~lE~Ar~v~~~~~~nv~~~~~~--~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v~- 339 (898)
T COG5240 267 PFLNSWLSDKF-EMVFLEAARAVCALSEENVGSQFVD--QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---VS- 339 (898)
T ss_pred HHHHHHhcCcc-hhhhHHHHHHHHHHHHhccCHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---ee-
Confidence 44444444332 3467888888887742211111111 23555666778888889999999999999876552 11
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
-+=+-+-.++.+.+..+--.|...|..- +.++....++. .+..++.+-++.-+--+..++..||..-|.-+.
T Consensus 340 -vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 340 -VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred -ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 1112333445555555555444444432 23443333221 222223333344444455555555543333222
Q ss_pred HH--------HhCCcH---HHHHHHhhc---CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 521 CV--------ESADAV---PALLWLLKN---GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 521 ~i--------~~~g~i---~~Lv~lL~~---~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
.+ .++|+. ...++.+.+ ..|+.++.|...|+....+.+ .-.-+.+.|+.
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce-----------------y~~I~vrIL~i 474 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE-----------------YHQITVRILGI 474 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc-----------------hhHHHHHHHHH
Confidence 21 123332 122222221 234455555444444433222 22334555665
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 666 (2100)
|+...+... ....-+..+..-+--.+.-+|..|..||...+-+..+. +....+.-.|-+.+.+.+.+++..
T Consensus 475 LG~EgP~a~------~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 475 LGREGPRAK------TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred hcccCCCCC------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHH
Confidence 555433211 01112444444333456678999999998877653321 223345566778889999999999
Q ss_pred HHHHHHHH
Q 000133 667 ASRCLAAI 674 (2100)
Q Consensus 667 aa~aL~~L 674 (2100)
|+-.+.++
T Consensus 546 Asf~l~~~ 553 (898)
T COG5240 546 ASFLLRNM 553 (898)
T ss_pred HHHHHHhh
Confidence 99999988
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00027 Score=57.64 Aligned_cols=41 Identities=46% Similarity=0.687 Sum_probs=38.0
Q ss_pred CcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000133 473 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 513 (2100)
Q Consensus 473 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~ 513 (2100)
+++++..+++.|++|+|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.75 Score=57.02 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=170.6
Q ss_pred chhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh
Q 000133 1498 PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL 1577 (2100)
Q Consensus 1498 ~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL 1577 (2100)
..++..+.+.+..+....-... .-...+..|-.+|++.....|-.|.++|.++++....+..... +-+-.+.
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN----~evEsLI 349 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN----KEVESLI 349 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC----hhHHHHh
Confidence 5566666777766543321100 1123456677778888999999999999999986555443333 4455667
Q ss_pred ccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhhhcccHHHHH-
Q 000133 1578 GSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLV- 1655 (2100)
Q Consensus 1578 ~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~~~~~v~~Lv- 1655 (2100)
++.|..+-..|+-.|.+-++...- +++.. |+..+..+ .++.+.-..+ |...|++........ -+.-|.
T Consensus 350 sd~Nr~IstyAITtLLKTGt~e~idrLv~~--I~sfvhD~---SD~FKiI~id-a~rsLsl~Fp~k~~s----~l~FL~~ 419 (898)
T COG5240 350 SDENRTISTYAITTLLKTGTEETIDRLVNL--IPSFVHDM---SDGFKIIAID-ALRSLSLLFPSKKLS----YLDFLGS 419 (898)
T ss_pred hcccccchHHHHHHHHHcCchhhHHHHHHH--HHHHHHhh---ccCceEEeHH-HHHHHHhhCcHHHHH----HHHHHHH
Confidence 788888888888888877766422 23222 22222222 3345544444 677777665322211 122222
Q ss_pred HHhhcCCHHHHHHHHHHHHHhccCChhhHHHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhh
Q 000133 1656 RLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPL 1735 (2100)
Q Consensus 1656 ~ll~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L 1735 (2100)
.|++.++-+-+..+..++..+.+.++..++ .+++.|..|+++.+..+..++.|.-|..++.-... -...|..+
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~--P~~yvrhI 492 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILGREGPRAKT--PGKYVRHI 492 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC--cchHHHHH
Confidence 234555668899999999998888876654 46788999999977889999999999875522111 01222222
Q ss_pred -hhhc-cChhhHHHHHHHHHHHHhcchhhhh--hHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhhcCCcccH-
Q 000133 1736 -SQYL-LDPQTQAQQARLLATLALGDLFQNE--GLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNK- 1810 (2100)
Q Consensus 1736 -~~~l-~~~~~~~~~~~~~A~~~l~~~~~~~--~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~~~~~~~~- 1810 (2100)
.+++ .++.+ +. .|+.+++...-+. .+... +-...|..+|++. +.++|..|..+|.++-..+.-..
T Consensus 493 yNR~iLEN~iv--Rs---aAv~aLskf~ln~~d~~~~~----sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~da~~pl 562 (898)
T COG5240 493 YNRLILENNIV--RS---AAVQALSKFALNISDVVSPQ----SVENALKRCLNDQ-DDEVRDRASFLLRNMRLSDACEPL 562 (898)
T ss_pred HHHHHHhhhHH--HH---HHHHHHHHhccCccccccHH----HHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhhhhhhcc
Confidence 2222 22222 22 3444443222111 01100 1133566688776 99999999999888773333222
Q ss_pred HHHHhhCCHHHHHHHh
Q 000133 1811 RAVAEAGGVQVVLDLI 1826 (2100)
Q Consensus 1811 ~~~~~~g~i~~L~~lL 1826 (2100)
....+.|-+|.|..-|
T Consensus 563 ~~sd~~~dipsle~~l 578 (898)
T COG5240 563 FSSDELGDIPSLELEL 578 (898)
T ss_pred ccccccCCcchhHHhh
Confidence 3444556666665444
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0049 Score=76.75 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=164.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCC--CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC--chhHHHHhhhc
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKS--DTATISQLTALLTSDLPESKVYVLDALKSMLSVVS--FSDILREGSAA 603 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~--~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~--~~~~~~~~i~~ 603 (2100)
...|..+..+++.+++..|..+|..|.... ........+..+.|+...+|..|...+.-++..-+ .+..-.+.-..
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 333666666777777777777777665422 11345566777778888888887777766666442 11100111112
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh--------
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF-------- 675 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~-------- 675 (2100)
..+...+...+.+.+-.+|-.|+.+|+.+-..+++...+......+..|- -..+..+....+.+=.
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lR------Rkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLR------RKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhh------hhhhcccchHHHHhcCCcccCccc
Confidence 34577888889999999999999999999887777666655544443221 1122233333332211
Q ss_pred -cCCc----hhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHH
Q 000133 676 -LSVR----ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 676 -~~~~----~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~ 749 (2100)
.+.+ +.....++..|+--.++.-+.+.--|||..|+..++.|+.+ +..+ ...+..|+..+.++-..+|.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHH
Confidence 0000 12344578889999999999999999999999999999965 4444 46788999999999999999
Q ss_pred HHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccc
Q 000133 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVA 793 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~ 793 (2100)
.|..+|..+..+.... +.-+..+...|...+.++.
T Consensus 429 ~ai~aL~~Is~~l~i~---------eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 429 KAIFALTMISVHLAIR---------EEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHheec---------HHHHHHHHHHHHhcCHHHH
Confidence 9999999999886654 4456667777777666655
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=70.24 Aligned_cols=452 Identities=16% Similarity=0.141 Sum_probs=234.9
Q ss_pred HHHHHHHHHHhhcCchhhh-HHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhh--cCHHHHhhhcccCcHHHHHHHHh
Q 000133 1165 FLALGFLIQLAKDCPSNKI-VMVEAGALEALTKYLSLGPQDATEEAATDLLGILF--SSAEIRRHESAFAAVSQLVAVLR 1241 (2100)
Q Consensus 1165 ~~Al~~L~~la~~~~~~r~-~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll~~l~--~~~~~~~~~~~~~al~~Li~~L~ 1241 (2100)
...+|+|..+-.-.. .+. ...-.....+...+|+..+.-.|..+... +++.+ .|... ..+.+..|+.-|-
T Consensus 837 A~~VWLLs~vq~l~~-~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrG-lglVYelgd~~~-----k~~LV~sL~~tl~ 909 (1702)
T KOG0915|consen 837 AGCVWLLSLVQYLGQ-QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRG-LGLVYELGDSSL-----KKSLVDSLVNTLT 909 (1702)
T ss_pred HHHHHHHHHHHHhcc-CchhhhccHHHHHHHHHHhcccHHHHHHHHhcC-ceEEEecCCchh-----HHHHHHHHHHHHh
Confidence 678888887754332 111 11112344677777776544455554433 22221 11111 2234556665554
Q ss_pred cCCHH-------HHHHH---------------HHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhh-HHHHHHHHHH
Q 000133 1242 LGGRG-------ARYSA---------------AKALESLFSADHIRNAESARQAVQPLVEILNTGLERE-QHAAIAALVR 1298 (2100)
Q Consensus 1242 ~~~~~-------~r~~A---------------a~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~-~~~A~~aL~~ 1298 (2100)
.|... ...+. =+-|.+|++ .++++..|--.+++-++.-... ++-|++.++.
T Consensus 910 ~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~ 983 (1702)
T KOG0915|consen 910 GGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGA 983 (1702)
T ss_pred ccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHHhhhhchhhcccchhhchHH
Confidence 44321 11111 111334432 2455666666666666554333 3348888888
Q ss_pred hhcCCchh--hHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHH
Q 000133 1299 LLSENPSR--ALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQH 1376 (2100)
Q Consensus 1299 La~~~~~~--~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~ 1376 (2100)
++.....+ +++ ...+|.|+++=-+ |+..+......+|..|..++..-....-......|+.-|.+....+|+
T Consensus 984 i~~~a~~kl~p~l-----~kLIPrLyRY~yD-P~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVRe 1057 (1702)
T KOG0915|consen 984 IAKQAGEKLEPYL-----KKLIPRLYRYQYD-PDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVRE 1057 (1702)
T ss_pred HHHHHHHhhhhHH-----HHhhHHHhhhccC-CcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 87533222 222 2367888887555 688999999999999998876555555566777888888889999999
Q ss_pred HHHHHHHHhcc---cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC---CchhhHHHHhcCcHHHHHHHh
Q 000133 1377 SVVRALDKLVD---DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD---RPSCKLEMVKAGVIESVLDIL 1450 (2100)
Q Consensus 1377 ~A~~aL~~L~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~---~~~~k~~i~~~~~i~~lv~~L 1450 (2100)
.++-||..|.. .+...+.+ ..+-..+...++|=...||++|-.+...+++- --+...-.....++..++.+|
T Consensus 1058 asclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 99999999984 22222221 12233444445565667777655544433321 101100001122455555555
Q ss_pred c-----cCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhH-HHHHHHHhhcC--CCcccccc
Q 000133 1451 H-----EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHS-ALQVLVNILEH--PQCRADYS 1522 (2100)
Q Consensus 1451 ~-----~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~-A~~~L~nL~~~--~~~~~~~~ 1522 (2100)
- +.-.++|......+..|++...-.-.+..++.++.|+..+.... +.+.-. ++.+ .|+... +.-+....
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE--~~vLnYls~r~-~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE--PQVLNYLSLRL-INIETEALDTLRASAA 1212 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc--hHHHHHHHHhh-hhhHHHHHHHHHHhhh
Confidence 3 34556777788888888887765544557777888777776543 333221 2211 111000 00000000
Q ss_pred --cccCCC----------------hHhhhhccCCC-CHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHH
Q 000133 1523 --LTSHQA----------------IEPLIPLLDSP-APAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHI 1583 (2100)
Q Consensus 1523 --~~~~~~----------------l~~Lv~~L~~~-~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~ 1583 (2100)
..-... ++.+.++++++ .-..|..++..+.-+...-..--.......+..+.-.+++.|+.
T Consensus 1213 ksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNes 1292 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNES 1292 (1702)
T ss_pred cCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHH
Confidence 000111 23333333211 22234444444444433100000011112234455555789999
Q ss_pred HHHHHHHHHHHhhcCC-hhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchhh
Q 000133 1584 LQQRAVKALVSIALTW-PNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFY 1646 (2100)
Q Consensus 1584 vr~~Al~AL~~Ls~~~-~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~~ 1646 (2100)
+|++-..|.+.|.... ++.+.+- +..++..+.-.+++.. ..+++++++|++...+.+
T Consensus 1293 v~kafAsAmG~L~k~Ss~dq~qKL--ie~~l~~~l~k~es~~----siscatis~Ian~s~e~L 1350 (1702)
T KOG0915|consen 1293 VRKAFASAMGYLAKFSSPDQMQKL--IETLLADLLGKDESLK----SISCATISNIANYSQEML 1350 (1702)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHH--HHHHHHHHhccCCCcc----chhHHHHHHHHHhhHHHH
Confidence 9999999999999653 4443322 3444544443333333 236777777776665544
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0041 Score=74.29 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 536 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 536 (2100)
-++.+|..++.-+.-+.......+.-.++...+...+.++.-..|+.++|+++|++.. |.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA--------------------L~ 465 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA--------------------LI 465 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH--------------------HH
Confidence 3455566666666654334444455556667777778888889999999999999751 11
Q ss_pred cCChhHHHHHH----------HHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhH-HHHhhhcc
Q 000133 537 NGSANGKEIAA----------KTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDI-LREGSAAN 604 (2100)
Q Consensus 537 ~~~~~~~~~Aa----------~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~-~~~~i~~~ 604 (2100)
.+.|..+..++ +.+.+.|. .+...++.++.++||++..+.. ..+. .++.+ .
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~---------------Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~--~ 528 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKMLRSAIEAS---------------ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII--E 528 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhh---------------hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH--H
Confidence 11111111111 11112211 1334577777777777765432 1111 11111 1
Q ss_pred chHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 000133 605 DAVETMIK-ILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAI 674 (2100)
Q Consensus 605 ~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~aa~aL~~L 674 (2100)
+.+..+++ ..-...-.+|.+||.+++||+++..- .++.-....+.+.|..++.+ .+.+++..|+.+|..-
T Consensus 529 ~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 529 ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 22333333 23345678999999999999987432 33333444578888888854 5668999999988654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.54 Score=59.81 Aligned_cols=309 Identities=11% Similarity=0.105 Sum_probs=168.8
Q ss_pred HhhcCCCC-ChHHHHHHHHHHHHHhC-CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-chHHHHh
Q 000133 364 VNQFKPRL-PFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQG 440 (2100)
Q Consensus 364 v~lL~~~~-~~~vq~~aa~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~ 440 (2100)
-++|.+++ ...++..++-|+-.|+. +|+... ..+....++.+|++.+..+...+...+.-|+..+++ ++.++.
T Consensus 152 ~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~- 227 (938)
T KOG1077|consen 152 PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP- 227 (938)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-
Confidence 35555554 56789999999999954 454322 234567889999988888888888888888877665 333332
Q ss_pred CCcHHHHHHhhCCC-------------CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHH
Q 000133 441 REGIQLLISLLGLS-------------SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 507 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~a 507 (2100)
.++..|..+.... .|-++...+.+|.++-. . .++..|..-..+
T Consensus 228 -~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~-~----------------------~D~~~r~~l~ev 283 (938)
T KOG1077|consen 228 -LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT-P----------------------EDPSTRARLNEV 283 (938)
T ss_pred -HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC-C----------------------CCchHHHHHHHH
Confidence 2233333333222 23344444444444421 1 122222222222
Q ss_pred HHHH---hcCChhh---HHHHHhCCcHHHHHHHh--hcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHH
Q 000133 508 LRNL---CNHSEDI---RACVESADAVPALLWLL--KNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 508 L~~L---~~~~~~~---~~~i~~~g~i~~Lv~lL--~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
|..+ +...+.. +.......++=-.+.+. -+.+++....|+..|+.+..+.+ ..+|--
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE---------------~NiRYL 348 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE---------------TNIRYL 348 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc---------------ccchhh
Confidence 2222 2211111 11111111111112221 13456677777777777755443 466777
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
+.+.++.|+......+.++. . ...++..|+ ..+..+|+.|...|..+|.. ++... +|.-|++.|.+
T Consensus 349 aLEsm~~L~ss~~s~davK~----h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~elLqYL~t 415 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKK----H--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAELLQYLET 415 (938)
T ss_pred hHHHHHHHHhccchHHHHHH----H--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHHHHHHHhh
Confidence 88888877766433332222 1 667788887 77899999999999999965 23222 45567777777
Q ss_pred CCHHHHHHHHHHHHHHhcCC-chh-H---------HH--HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHH
Q 000133 659 GSECILVEASRCLAAIFLSV-REN-R---------EV--AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~-~~~-~---------~~--~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~ 725 (2100)
-+..++..-+.-++-|+..- ++- - +. .++..+.+-.++++.- .+++++..|+..+...++.+..++
T Consensus 416 Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE 494 (938)
T KOG1077|consen 416 ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHE 494 (938)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHH
Confidence 77666666555444443211 010 0 00 0222333333333332 467788888888887777766666
Q ss_pred HHHH
Q 000133 726 KAIA 729 (2100)
Q Consensus 726 ~~v~ 729 (2100)
.++.
T Consensus 495 ~mVK 498 (938)
T KOG1077|consen 495 NMVK 498 (938)
T ss_pred HHHH
Confidence 6654
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.068 Score=66.55 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=153.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 444 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 444 i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
.+.+..++-+++.+++..+..+++.+.. +.+....+.+.+.---++.-|... +..-|++|...+..+.......+.
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 3444444444559999999999999985 667777777776555555656543 566788999998888765222111
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
...|++..++.+.++.+++.+..|..+|+.++... |+ .+
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~------------------------------------P~----lv 143 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN------------------------------------PE----LV 143 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC------------------------------------HH----HH
Confidence 24567788888888877777777777777775522 11 45
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC-------CH--HHHHHHHHHHH
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-------SE--CILVEASRCLA 672 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~--~v~~~aa~aL~ 672 (2100)
...||++.|++.+-++..++.+..+.++..+... +..|..+...--+..+..-+.+. +. +....+..++.
T Consensus 144 ~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~ 222 (371)
T PF14664_consen 144 AECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIS 222 (371)
T ss_pred HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 5678999999988777767888889999998876 44444333322344444333222 22 34566677777
Q ss_pred HHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000133 673 AIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 717 (2100)
Q Consensus 673 ~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L 717 (2100)
.+..+=+..-....-+..+++.|+..+..|++++|......+..+
T Consensus 223 ~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 223 TLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 765543332212122236899999999999999999999999888
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=64.53 Aligned_cols=275 Identities=15% Similarity=0.098 Sum_probs=179.2
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHH-hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHH
Q 000133 1318 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVA-AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVA 1396 (2100)
Q Consensus 1318 l~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~-~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~ 1396 (2100)
+..+++++.+. +..++..|...+-.+... .++.-.. ....++.+.+++....+ ...|+.+|.|++.++..+..+.
T Consensus 5 l~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45677778774 668888888766666555 3333222 23467778888888777 6789999999999888888877
Q ss_pred hcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh-c----CcHHHHHHHhc-cCC--hhHHHHHHHHHHHH
Q 000133 1397 AHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK-A----GVIESVLDILH-EAP--DFLCSAFAELLRIL 1468 (2100)
Q Consensus 1397 ~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~-~----~~i~~lv~~L~-~~~--~~~~~~aa~lL~~L 1468 (2100)
.. ++..++.++.+.....-+..++.|.+++++++.....+.. . ..+..+++.+. .+- ...-+..+.++.+|
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 77 8888888888887888889999999999997666666543 2 34444444443 321 13345566677778
Q ss_pred HhccCCccccccc-CchHHHHHHhccCCCCchhHhH-HHHHHHHhhcCCCcccccccccCC-------------------
Q 000133 1469 TNNAGIAKGPSAA-KVVEPLFLLLTRSEFGPDGQHS-ALQVLVNILEHPQCRADYSLTSHQ------------------- 1527 (2100)
Q Consensus 1469 s~~~~~~~~~~~~-~~v~~Ll~ll~~~~~~~~~~~~-A~~~L~nL~~~~~~~~~~~~~~~~------------------- 1527 (2100)
+.....+...... .+....+.-++.++ ..+++. ...+|.|.+.+......+--...+
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~--s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSED--SQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccc--hhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 7766555333222 22333333334322 555543 566777755443322221001111
Q ss_pred --ChHhhhhccC-----CCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh--ccCCHHHHHHHHHHHHHhhcC
Q 000133 1528 --AIEPLIPLLD-----SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--GSGIHILQQRAVKALVSIALT 1598 (2100)
Q Consensus 1528 --~l~~Lv~~L~-----~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL--~s~~~~vr~~Al~AL~~Ls~~ 1598 (2100)
.+++=+++|. +++++++..-+++|-.+..+...|+.+.+.|+.+ +++-+ ...+++++++.-+....+-..
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp-ilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP-ILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH-HHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 1333235554 5789999999999999999999999999987754 45555 347888888888777777665
Q ss_pred Ch
Q 000133 1599 WP 1600 (2100)
Q Consensus 1599 ~~ 1600 (2100)
.+
T Consensus 317 e~ 318 (353)
T KOG2973|consen 317 EP 318 (353)
T ss_pred cc
Confidence 43
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=63.65 Aligned_cols=87 Identities=28% Similarity=0.330 Sum_probs=72.3
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHH
Q 000133 1233 VSQLVAVL-RLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVA 1311 (2100)
Q Consensus 1233 l~~Li~~L-~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~ 1311 (2100)
|+.|+..| ++++...|..|+++|+.+ +.+.+++.|+.++++++..++..|+.+|++++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 57899988 788899999999998854 44567999999999999999999999999986
Q ss_pred hhhcchhHHHHHHHhhcCChhhHHHHHHHHH
Q 000133 1312 DVEMNAVDVLCRILSSNCSMELKGDAAELCG 1342 (2100)
Q Consensus 1312 ~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~ 1342 (2100)
...+++.|.+.+.+.++..++..+...|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23578999999988766677888887764
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0009 Score=54.61 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=38.1
Q ss_pred ChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 515 SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 515 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+++++..+.+.|++|+|+++|+++++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=86.80 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=83.2
Q ss_pred CCCceeeeeccchhhhh----------------h----CCCcceEEEecCCCCCccccccccC-CCccccccceeccccC
Q 000133 1978 PGTLVVIIKRGNNMKQS----------------V----GNPSVYCKLTLGNTPPRQTKIVSTG-PNPEWEESFAWSFEIP 2036 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2036 (2100)
=|+|-||||..+++... + |.+..+.-+.+++.+-=+|+|+++. .||+|+|.|---..-+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 48889999988876531 1 1134555777777777789999886 4999999987554422
Q ss_pred CCCCeEEEEeecCCccCCcccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2037 PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
- ..+++.||+.+.||-.-+|++.|+.++++.-..+.|-|.+..+++
T Consensus 87 ~--~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~ 132 (808)
T PLN02270 87 A--SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDK 132 (808)
T ss_pred c--ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCC
Confidence 2 589999999999999999999999999999889999999977754
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.14 Score=61.76 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=173.7
Q ss_pred HHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccC
Q 000133 74 AATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 153 (2100)
Q Consensus 74 aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~ 153 (2100)
...-+..++.-|+...-++...+++.|+.+|.++|.++-.+.+..|..++..+.-.+ ..+| ...|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~e------s~eg-AevLid------ 170 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYE------SEEG-AEVLID------ 170 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhccccc------cccc-HHHHHH------
Confidence 444555667778888888899999999999999999998888888999987322111 0111 112222
Q ss_pred CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHH------HHHHHHHHHHHHhhcCcchhhHHhhhc
Q 000133 154 KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSS------TQAHVCFLLACMMEEDVSVCSRVLAAD 227 (2100)
Q Consensus 154 ~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~------v~~~a~~~L~~L~~~~~~~~~~i~~~g 227 (2100)
++++.+.++.|++-+..=|.. -..++..++-|+..-.+..+..+++.|
T Consensus 171 --------------------------aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ 224 (536)
T KOG2734|consen 171 --------------------------ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQG 224 (536)
T ss_pred --------------------------HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 244445555555554432222 234566677777777777888888999
Q ss_pred hHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 228 ATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 228 ~i~~Lv~lL~~~-~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
.+.+|++-+... .-..-+..|..+|.-+-..+.+++.....-.|+..+++-+.--.
T Consensus 225 ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk----------------------- 281 (536)
T KOG2734|consen 225 LLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYK----------------------- 281 (536)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhh-----------------------
Confidence 999999855432 22346778888888888877788888888899998887662110
Q ss_pred hCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 386 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L 386 (2100)
.++|. ....+.+-+....+|+.+
T Consensus 282 --------------~~dP~-------------------------------------------~~~E~EmmeNLFdcLCs~ 304 (536)
T KOG2734|consen 282 --------------RHDPA-------------------------------------------TVDEEEMMENLFDCLCSL 304 (536)
T ss_pred --------------ccCCC-------------------------------------------CcCHHHHHHHHHHHHHHH
Confidence 00110 011122345566788888
Q ss_pred hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcHHHHHHhh
Q 000133 387 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 387 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL 451 (2100)
...|.++.++...+++....-+++. ....+..+.++|-....+.+ .++..+++..|+..+..+.
T Consensus 305 lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 305 LMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8888999999998998887777765 33456677888888777655 5677788888887666643
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=63.11 Aligned_cols=86 Identities=30% Similarity=0.416 Sum_probs=71.0
Q ss_pred HHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccch
Q 000133 528 VPALLWLL-KNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDA 606 (2100)
Q Consensus 528 i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~ 606 (2100)
+|.|++.+ +++++.++..++.+|+++ .++..++.|..++.++++.+|..+..+|+.+. +..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GDPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHH
Confidence 57899999 788999999999999855 44678999999999999999999999999542 3446
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHH
Q 000133 607 VETMIKILSST-KEETQAKSASALA 630 (2100)
Q Consensus 607 i~~Lv~lL~s~-~~~~~~~Aa~aL~ 630 (2100)
++.|.+++.++ +..+|..|+.+|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 99999988765 5667999998875
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.063 Score=66.82 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=166.6
Q ss_pred ChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhc--CCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHh
Q 000133 1330 SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVT--EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGL 1407 (2100)
Q Consensus 1330 ~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~l 1407 (2100)
+.+++..+..+++.+..+++....+.....---++.-|.. .++..|++|++-+..+.+-..... ..-.|++..++..
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~-~~~~~vvralvai 116 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK-EIPRGVVRALVAI 116 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-cCCHHHHHHHHHH
Confidence 3789999999999999998877777766633344444543 346689999999988874211111 1256788999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHH
Q 000133 1408 LYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPL 1487 (2100)
Q Consensus 1408 L~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~L 1487 (2100)
.++.+...|..|++.|+.++-.+| +.+.+.|+++.+++.+.++..+..+.....+..+-+.+..+.....+--++.+
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l 193 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESL 193 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHH
Confidence 999999999999999999997764 45678999999999998865556666666777777888777655566667777
Q ss_pred HHHhccCC-----CCc--hhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000133 1488 FLLLTRSE-----FGP--DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1488 l~ll~~~~-----~~~--~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
+.-+++.+ +.. +-.+.+..++..+...=...-.+.+.+..+++.|+..|.-+.+++|......|-.+..
T Consensus 194 ~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 194 LAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 77777652 112 2334577788887766555555544445789999999999999999999999999866
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=2.9 Score=56.46 Aligned_cols=460 Identities=14% Similarity=0.068 Sum_probs=216.5
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc--------CCCHHHHHHHHHHHHHhhccCccc-
Q 000133 364 VNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--------MATNEVQEELVRALLKLCNNEGSL- 434 (2100)
Q Consensus 364 v~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--------~~~~~v~~~A~~aL~~L~~~~~~~- 434 (2100)
+.++.+..+...=..++-+|+.|+...-......+ ..+|.++..+. +....+|..||+.++.+++.....
T Consensus 385 id~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~ 463 (1133)
T KOG1943|consen 385 IDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD 463 (1133)
T ss_pred HHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh
Confidence 34444444444455788888888654332221111 23555554443 223568999999999998875432
Q ss_pred hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 000133 435 WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~ 514 (2100)
-+-+.+.=.--.|+..+=++.-.+|+.|..|+.......... -.|++ |+...+.-+...|.++-..++.--..
T Consensus 464 l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 464 LKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAE 536 (1133)
T ss_pred hhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHh
Confidence 011111011122333445677788999988888765321110 01333 33333333444444444444333322
Q ss_pred ChhhHHHHHhCCcHHHHHHH-hhcCChhHHHHHHHHHHHHhcCC----CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHh
Q 000133 515 SEDIRACVESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKS----DTATISQLTALLTSDLPESKVYVLDALKSMLS 589 (2100)
Q Consensus 515 ~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~aL~~L~~~~----~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~ 589 (2100)
.+..+..+ +..|+.- +...+..+++.++++|.+|+... .....|+++.-..+.+...+.....+.+.+..
T Consensus 537 ~~~y~~~~-----f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 537 FSGYREPV-----FNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhhHHHHH-----HHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 33333332 2222221 33456778888888888876533 12566777777666777666665555554432
Q ss_pred ----ccCc-hhHHHHhhhc-cchHHHHHH-HhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCH
Q 000133 590 ----VVSF-SDILREGSAA-NDAVETMIK-ILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSE 661 (2100)
Q Consensus 590 ----~~~~-~~~~~~~i~~-~~~i~~Lv~-lL~s~-~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~ 661 (2100)
+.+. ....+..+.. ...++.+.. .+.-+ ..-.+..-+..+.+++.............+.-..+.+.+.+.+
T Consensus 612 ~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n- 690 (1133)
T KOG1943|consen 612 ALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN- 690 (1133)
T ss_pred HhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-
Confidence 1100 0011111110 001222222 12112 2345555666666776654444444444444444455554444
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll 740 (2100)
.++..+-.+++.++...-..+.. .+...+...+..+..+ ++.+|.--..+++++-. +.......+.+........
T Consensus 691 ~i~~~av~av~~l~s~y~~~d~~--~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~--~~i~~~~q~~lc~~~l~~~ 766 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKADEG--EEAPLITRYLSRLTKCSEERIRRGLILALGVLPS--ELIHRHLQEKLCKLVLELL 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhcCch--hhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcH--HhhchHHHHHHHHHHhccC
Confidence 67777888888886432111100 0011223344444444 44455555555554420 1111111112233333333
Q ss_pred ccC-ChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc----ccc---cchHhHHHHHHHHHHcCCCCC
Q 000133 741 CEG-TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA----SGS---VATSEALDALAILSRSGGASG 812 (2100)
Q Consensus 741 ~~~-~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~----~~~---v~~~~al~~L~~L~~~~~~~~ 812 (2100)
-++ ....|.+...+|.++...... ....+ .-+..+..|++.+.+- ..+ -+++.||.++..+...-.+
T Consensus 767 p~d~~a~aR~~~V~al~~v~~~~~~-~~~~~--~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~-- 841 (1133)
T KOG1943|consen 767 PSDAWAEARQQNVKALAHVCKTVTS-LLFSE--SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS-- 841 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHH-hhccc--cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC--
Confidence 333 344677888888887764441 00111 1122333444444332 123 3458888888876422221
Q ss_pred CCCcccceeeccCCCchhhhhhhc----cCChhHHHHHHHHHHHH
Q 000133 813 HVKPAWQVLAEFPKSITPIVSSIA----DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 813 ~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~~~~~a~~~L~~L 853 (2100)
| ....+.++.+++.++. +.-..+|+-|..++.++
T Consensus 842 ---p----~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 842 ---P----KLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred ---c----ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 1 2233445555444222 22244566666666655
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.088 Score=60.77 Aligned_cols=260 Identities=15% Similarity=0.131 Sum_probs=156.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 445 QLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 445 ~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
-.+++++.+.++.++..|+.-+.+++.. ......-.+.-.++.+.+++....+ -+.|+.+|.|++.. +..|..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 4578899999999999999999999853 3333333344567889999887766 67799999999985 677777776
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------------CcHHHHHHHhhcCCcc---hHHHHHHHHHHHH
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------------ATISQLTALLTSDLPE---SKVYVLDALKSML 588 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------------~~i~~L~~lL~~~~~~---~~~~a~~aL~~l~ 588 (2100)
. .+..+++.+-+..+..-+..|..|.||+...+. ..+..+.....+.+.. .-.+.+-.+.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 777888888888788888999999999885532 2223333322222222 0111112222221
Q ss_pred hccCchhHHHHhhhccchH--HHHHHHhcCCCHHHHH-HHHHHHHHHhcCChhhHHHHHhcC--chHHH-----------
Q 000133 589 SVVSFSDILREGSAANDAV--ETMIKILSSTKEETQA-KSASALAGIFETRKDLRESSIAVK--TLWSV----------- 652 (2100)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~i--~~Lv~lL~s~~~~~~~-~Aa~aL~~L~~~~~~~~~~~~~~g--~v~~L----------- 652 (2100)
. .+. -|..+....-+ +.+..+ .+.+..+|+ ..+..|.|.|++. .+.+.+...+ .+|.+
T Consensus 161 ~---~~~-gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 161 Q---FEA-GRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred h---hhh-hhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 1 111 22222222211 122222 234455555 4677888888763 3444433322 22222
Q ss_pred ----------HHhh-----cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHHH
Q 000133 653 ----------MKLL-----DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALAN 716 (2100)
Q Consensus 653 ----------v~lL-----~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~~ 716 (2100)
+++| +++++.+++.-..+|.-||... ..|..+...|+-+.+-.+=+. ++++++ .++.-+.+
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--AGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--HhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence 3444 3456779999999999997643 566656777766666665444 455554 45555555
Q ss_pred Hh
Q 000133 717 LI 718 (2100)
Q Consensus 717 L~ 718 (2100)
+.
T Consensus 312 ~L 313 (353)
T KOG2973|consen 312 ML 313 (353)
T ss_pred HH
Confidence 54
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.035 Score=70.29 Aligned_cols=281 Identities=17% Similarity=0.149 Sum_probs=170.2
Q ss_pred HHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHH--hccCCcccHHHHHhcCChHHHHHhccC
Q 000133 419 ELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCL--LSNENDDSKWAITAAGGIPPLVQILES 495 (2100)
Q Consensus 419 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~n--Ls~~~~~~~~~i~~~g~i~~Lv~lL~~ 495 (2100)
.|..+|+-+-.+... +.+..|...|++. ++.++..++..|+- +.+.+.+ ....|-..|..
T Consensus 398 GalyAlGLIhA~hG~--------~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~ 460 (929)
T KOG2062|consen 398 GALYALGLIHANHGR--------GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYN 460 (929)
T ss_pred chhhhhhccccCcCc--------cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhc
Confidence 455565554444322 4567888888765 55666666655443 3332222 23445555655
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCc
Q 000133 496 GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP 574 (2100)
Q Consensus 496 ~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~ 574 (2100)
.+.-.-|.|..+.+-+...+ .+.+ ++.-++..-+. ...++++.-+.-+.-..+....++-+-+..++.+.+|
T Consensus 461 D~AvsGEAAgi~MGl~mlGt-~~~e------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdp 533 (929)
T KOG2062|consen 461 DSAVSGEAAGIAMGLLMLGT-ANQE------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDP 533 (929)
T ss_pred cchhhhhHHHHhhhhHhhCc-CcHH------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCch
Confidence 55555555555555444321 1211 23333333332 3345554444434333333333445556667777777
Q ss_pred chHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHH
Q 000133 575 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVM 653 (2100)
Q Consensus 575 ~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv 653 (2100)
-.|....-+++ ++++.+ .+.++|+.|+.. .++.++++|+.|..+|+-++..+++ .+|..+
T Consensus 534 ilR~~Gm~t~a-lAy~GT---------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V 594 (929)
T KOG2062|consen 534 ILRYGGMYTLA-LAYVGT---------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTV 594 (929)
T ss_pred hhhhhhHHHHH-HHHhcc---------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHH
Confidence 77766555554 333332 345668888886 6889999999999999998887664 467777
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cHHHHHHHHc
Q 000133 654 KLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD--SEVSEKAIAE 730 (2100)
Q Consensus 654 ~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~~~~~~~v~~ 730 (2100)
.+| .+.++.|+-.+|.+|+--|++.. .+ .++..|-.+++++..=||.-|+.+++-++.- +..+.+ -.
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG--~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~ 664 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTG--LK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VN 664 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCC--cH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HH
Confidence 777 56788999999999998887753 22 2466666777888888999999999988722 221211 24
Q ss_pred CcHHHHHHHHccCChh--HHHHHH
Q 000133 731 EIILPATRVLCEGTIS--GKTLAA 752 (2100)
Q Consensus 731 ~~v~~L~~ll~~~~~~--~~~~Aa 752 (2100)
+....+.+...+...+ ++.+|.
T Consensus 665 ~frk~l~kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDGMAKFGAI 688 (929)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5566677777666655 455654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.041 Score=72.09 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=157.5
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC---CHHHHHHHHHHHHHHhcCCh
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG---SAKAKEDSASILRNLCNHSE 516 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~vre~A~~aL~~L~~~~~ 516 (2100)
..|..|.++++|+++..+++-.-+.+=..+-.-++..+..+++.+|-.-.++.|..+ +++.|..|+.+|.-++..-+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 347789999999999999998888777777556788889999999999999998873 67999999999999998656
Q ss_pred hhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC--------CCcHHHHHHHhhcCCcchHHHHHHHHHHH
Q 000133 517 DIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD--------TATISQLTALLTSDLPESKVYVLDALKSM 587 (2100)
Q Consensus 517 ~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~--------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l 587 (2100)
-.+....+.+.+...+..|.++ .+-.++-.+-+|+.|..+-+ ..+-+.|..+|.+..+++|..|.-|||.+
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 6677777888888888888885 57789999999999987553 36788999999999999999999999999
Q ss_pred HhccC--chh---HHHHh-------hhccchHH----HHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 588 LSVVS--FSD---ILREG-------SAANDAVE----TMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 588 ~~~~~--~~~---~~~~~-------i~~~~~i~----~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
....+ .++ ...+. +...+.++ .++.+++++++-++..-+.+|..+..+...
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 88531 111 11111 11122233 677788899999999999999998877543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=1.9 Score=56.07 Aligned_cols=426 Identities=18% Similarity=0.126 Sum_probs=205.0
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHhcCc-chHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcC
Q 000133 1321 LCRILSSNCSMELKGDAAELCGVLFGNT-RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHG 1399 (2100)
Q Consensus 1321 L~~lL~~~~~~~~~~~a~~~L~~L~~~~-~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g 1399 (2100)
+.++..+. |..++...--..+.++.-. +. .-....|..-....++..|..|+++|.++-+......
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~isedv------iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~------ 135 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISEDV------IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQA------ 135 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccchhh------hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHH------
Confidence 44455543 5555555555555553321 11 0112233333455677889999999988874322111
Q ss_pred CHHHHHHhhcCCChhHHHHHHHHHHHhhcCCc-hhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccc
Q 000133 1400 AVIPLVGLLYGRNYMLHEAISRALVKLGKDRP-SCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGP 1478 (2100)
Q Consensus 1400 ~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~-~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~ 1478 (2100)
+-..+-..+-+.++.++..|+..=..+-..+. ..|... .-+.....+...-++-.+..+|+.+-.+.+..
T Consensus 136 iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~------neiqea~~s~~~m~QyHalglLyqirk~drla--- 206 (865)
T KOG1078|consen 136 IERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA------NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLA--- 206 (865)
T ss_pred HHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH------HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHH---
Confidence 11222233445666666665544333333221 111111 11111112222222333444555554444332
Q ss_pred cccCchHHHHHHhccCC-CCchh----HhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHH
Q 000133 1479 SAAKVVEPLFLLLTRSE-FGPDG----QHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1553 (2100)
Q Consensus 1479 ~~~~~v~~Ll~ll~~~~-~~~~~----~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~ 1553 (2100)
+..++..+.+.. .++-. .+.+.+.+.+ . .......++.+=++|.+....+..+++.++.+
T Consensus 207 -----~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~----~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~ 271 (865)
T KOG1078|consen 207 -----VSKLVQKFTRGSLKSPLAVCMLIRIASELLKE----N------QQADSPLFPFLESCLRHKSEMVIYEAARAIVS 271 (865)
T ss_pred -----HHHHHHHHccccccchhHHHHHHHHHHHHhhh----c------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhh
Confidence 344444444311 11211 1222223222 1 01333456666777888999999999999998
Q ss_pred hhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhcc-ChHHHH-------------HHhccc
Q 000133 1554 LLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEG-GVTELS-------------KIILQA 1619 (2100)
Q Consensus 1554 l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G-~i~~Ll-------------~lL~~~ 1619 (2100)
+... +-..+. .++..|.-++++....+|.+|.+.|.+++...|....... -+.+|+ -+|.++
T Consensus 272 l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG 347 (865)
T KOG1078|consen 272 LPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTG 347 (865)
T ss_pred cccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhc
Confidence 8652 111121 2778888888999999999999999999977665210000 011111 122223
Q ss_pred CCCchHHHHHHHHHHHHhhhcccchhh------------h--cccHHHHHHHhhc-CCHHHHHHHHHHHHHhccCChhhH
Q 000133 1620 DPSLPHALWESAASVLSSILQFSSEFY------------L--EVPVAVLVRLLRS-GSEGTVIGSLNALLVLESDDGTSA 1684 (2100)
Q Consensus 1620 ~~~~~~~l~e~a~~~L~~i~~~~~~~~------------~--~~~v~~Lv~ll~~-~~~~~~~~a~~aL~~L~~~~~~~~ 1684 (2100)
......++..+....++++...-.... . ..-+.-|-++|.. ++-+-+.....++..+....+...
T Consensus 348 ~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK 427 (865)
T KOG1078|consen 348 TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK 427 (865)
T ss_pred chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh
Confidence 333334444444444444432111000 0 0112233334433 223455555555555444333222
Q ss_pred HHHHHcccHHHHHHHHhccCcHHHHHHHHHHHhcCchhhhhhhchhhhhhhhhhccChhhHHHHHHHHHHHHhcchhh-h
Q 000133 1685 EAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQ-N 1763 (2100)
Q Consensus 1685 ~~i~~~g~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~~~~A~~~l~~~~~-~ 1763 (2100)
.-+...|..|+++.+....+.+.|.-|..++..-.. -.+.|..+- +--..+....++.|..+++.... .
T Consensus 428 -----e~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~--Pskyir~iy---NRviLEn~ivRaaAv~alaKfg~~~ 497 (865)
T KOG1078|consen 428 -----ERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN--PSKYIRFIY---NRVILENAIVRAAAVSALAKFGAQD 497 (865)
T ss_pred -----hHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC--cchhhHHHh---hhhhhhhhhhHHHHHHHHHHHhcCC
Confidence 246777888888866788888888888765422211 112222211 11111222223344444433321 1
Q ss_pred hhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 000133 1764 EGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLV 1803 (2100)
Q Consensus 1764 ~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~aL~~l~ 1803 (2100)
+.+.. +-...|..++.+. +.++|+.|-.+|..+.
T Consensus 498 ~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 498 VVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE 531 (865)
T ss_pred CCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence 11111 1123456677665 9999999999988877
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0075 Score=73.27 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG 496 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~ 496 (2100)
-.+++.+|..++..-.-.+.-+.+....++|+++|.+++..+...+...+||+.-.....+..+.+.|.|..|++++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34667778888877555666777788899999999998888888899999999877778889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcc
Q 000133 497 SAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPE 575 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~ 575 (2100)
+...|.+..|+|.++..... +.+-.+...-++..++++..++.+.++....+.|.|+.++.... ....+
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn----------Ekskd 555 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN----------EKSKD 555 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccc----------cccce
Confidence 99999999999999986543 34555667778899999999999999999999999998743210 00111
Q ss_pred hHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CchHHHHH
Q 000133 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMK 654 (2100)
Q Consensus 576 ~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~-g~v~~Lv~ 654 (2100)
+ +....+ ++.. .+.|++.+.+.+|-.-...+..|.+++..+++.++.+... ..+.....
T Consensus 556 v----------~~K~~p-----~~yl-----fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~e 615 (743)
T COG5369 556 V----------FIKATP-----RRYL-----FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFE 615 (743)
T ss_pred e----------EEecCh-----HHHH-----HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHH
Confidence 0 000000 1111 4556677777777666666777888777755544443322 22222222
Q ss_pred hh---------cCCC--HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--
Q 000133 655 LL---------DVGS--ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS-- 721 (2100)
Q Consensus 655 lL---------~~~~--~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~-- 721 (2100)
.+ ..++ ..+.-.-.-...++..+ .+..+............-+--..++.|.--.+.|...|+.+..
T Consensus 616 il~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~-~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~ 694 (743)
T COG5369 616 ILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN-SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDG 694 (743)
T ss_pred HHHHHcccCCCCCCCCcccccCccceeeeccccc-ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccC
Confidence 22 1111 11111111122222111 0100000000001110001112356667677777777776432
Q ss_pred --------HHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 722 --------EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 722 --------~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
+-+....+.|.-+.|.+.-..++..+|+.+-.||.++
T Consensus 695 ~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 695 SEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred CccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 2233334566666666666666667999988888764
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0031 Score=79.69 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=78.6
Q ss_pred CCceeeeeccchhhhhh-CC-CcceEEEecC--CCCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQSV-GN-PSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2053 (2100)
..|+|+|++..++.+.= ++ +.-++++.+. ...-+||||+++..||+|+|+|.|.+..- =.++.|++.+++-+.|+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 46899999999998765 33 5566666665 34788999999999999999999984433 23559999999999998
Q ss_pred Cccc-ceEEEEEeeEEeecccccceee
Q 000133 2054 KSSF-GKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2054 ~~~~-~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+..+ |.|.|.++.|--.+...--+.|
T Consensus 247 r~~~iGev~~~l~~~~~~~~~~~w~~l 273 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLLSTTLFWKDL 273 (421)
T ss_pred cccEEEEEEecCccccccccceeeecc
Confidence 8887 9999999888776653333444
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.23 Score=62.85 Aligned_cols=295 Identities=19% Similarity=0.154 Sum_probs=177.5
Q ss_pred hhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCc--hHHHHHHHHHHHhcc-cHHHHH
Q 000133 1317 AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS--PAQHSVVRALDKLVD-DEQLAE 1393 (2100)
Q Consensus 1317 al~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~-~~~~~~ 1393 (2100)
++..+..=|.+. ++...-.|+...+++..- +.+. .+-+.+-++|.+++. -++..|+-.|.+++. .+.
T Consensus 112 vin~iknDL~sr-n~~fv~LAL~~I~niG~r-e~~e-----a~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD--- 181 (938)
T KOG1077|consen 112 VINSIKNDLSSR-NPTFVCLALHCIANIGSR-EMAE-----AFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD--- 181 (938)
T ss_pred HHHHHHhhhhcC-CcHHHHHHHHHHHhhccH-hHHH-----HhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence 455555545443 445566666766666332 1111 122334467777653 567777777777774 221
Q ss_pred HHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCch-hhHHHHhcCcHHHHHHHhcc-----CCh---------hHH
Q 000133 1394 LVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS-CKLEMVKAGVIESVLDILHE-----APD---------FLC 1458 (2100)
Q Consensus 1394 ~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~-~k~~i~~~~~i~~lv~~L~~-----~~~---------~~~ 1458 (2100)
.+-..+-..+++.+|++.+..|.-++...+-.+++.+|+ .+. +++..+.-|.+ +.+ .-.
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~------~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT------CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh------hHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 111235578999999999999999999888888887654 333 23333222221 111 011
Q ss_pred HHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC---CCchhHhH-HHH----HHHHhhcCCCcccccccccCCChH
Q 000133 1459 SAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE---FGPDGQHS-ALQ----VLVNILEHPQCRADYSLTSHQAIE 1530 (2100)
Q Consensus 1459 ~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~---~~~~~~~~-A~~----~L~nL~~~~~~~~~~~~~~~~~l~ 1530 (2100)
-...++++.|...+.......-....+.+-.+|...+ ....+|+. |-. -..+|..+.++... .-...+.
T Consensus 256 WL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~---ll~~~~~ 332 (938)
T KOG1077|consen 256 WLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE---LLSRAVN 332 (938)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH---HHHHHHH
Confidence 2356677888887765544444444444545554444 23344443 322 22233333222222 1224567
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcCChhHHHhccCh
Q 000133 1531 PLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG-SGIHILQQRAVKALVSIALTWPNEIAKEGGV 1609 (2100)
Q Consensus 1531 ~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~-s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i 1609 (2100)
.|-++|.+....+|-.+++.+..|+..+.....+..+ .+..+..|+ ..+-.+|+.|+.-|..++... |+ .-+|
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Na---k~IV 406 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NA---KQIV 406 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hH---HHHH
Confidence 7788888999999999999999998876666555554 577788887 688999999999999888654 32 1135
Q ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHh
Q 000133 1610 TELSKIILQADPSLPHALWESAASVLSS 1637 (2100)
Q Consensus 1610 ~~Ll~lL~~~~~~~~~~l~e~a~~~L~~ 1637 (2100)
..|+..|.+.|.+.+..+.- -.++|+.
T Consensus 407 ~elLqYL~tAd~sireeivl-KvAILaE 433 (938)
T KOG1077|consen 407 AELLQYLETADYSIREEIVL-KVAILAE 433 (938)
T ss_pred HHHHHHHhhcchHHHHHHHH-HHHHHHH
Confidence 66888888888877777666 3344443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=6.4 Score=55.19 Aligned_cols=416 Identities=13% Similarity=0.113 Sum_probs=214.2
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChh---------------------
Q 000133 1229 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLER--------------------- 1287 (2100)
Q Consensus 1229 ~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~--------------------- 1287 (2100)
.......+..+|.+.++-.+..|++-|+-.-+. -+.-...+.+..|+.-|..+...
T Consensus 859 ~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel---gd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~ 935 (1702)
T KOG0915|consen 859 LKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL---GDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPD 935 (1702)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHhcCceEEEec---CCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCC
Confidence 344557888888888888888888766533221 11122244455566555433211
Q ss_pred -hHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHH
Q 000133 1288 -EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSL 1366 (2100)
Q Consensus 1288 -~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~l 1366 (2100)
..-....=|.+||++=. +...+-..|.+-.++..+.-+.-|+-=++.++.+..-.....-...||.|...
T Consensus 936 Gg~isTYKELc~LASdl~---------qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY 1006 (1702)
T KOG0915|consen 936 GGKISTYKELCNLASDLG---------QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY 1006 (1702)
T ss_pred CCcchHHHHHHHHHhhcC---------ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh
Confidence 11123333444442110 01123334444444333444455555555565554322222333455555555
Q ss_pred HhcCCchHHHHHHHHHHHhc-ccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCch--hhHHHHhcCcH
Q 000133 1367 LVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS--CKLEMVKAGVI 1443 (2100)
Q Consensus 1367 L~~~~~~~~~~A~~aL~~L~-~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~--~k~~i~~~~~i 1443 (2100)
=.+++..++ .|...+|+.. .+.......+-..+.+-|+.-+.+..-+||++++.||..+-..+|. .++.+ ....
T Consensus 1007 ~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw 1083 (1702)
T KOG0915|consen 1007 QYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELW 1083 (1702)
T ss_pred ccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHH
Confidence 556666554 4566666666 5656666666777888898889999999999999999999877532 22222 3456
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHhccC-Cc---ccccccCchHHHHHHhccCC---CCchhHhHHHHHHHHhhcCCC
Q 000133 1444 ESVLDILHEAPDFLCSAFAELLRILTNNAG-IA---KGPSAAKVVEPLFLLLTRSE---FGPDGQHSALQVLVNILEHPQ 1516 (2100)
Q Consensus 1444 ~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~-~~---~~~~~~~~v~~Ll~ll~~~~---~~~~~~~~A~~~L~nL~~~~~ 1516 (2100)
..+.+...+-.+.+|.++-.++..|++... .+ ........+..++..|-++. .-+.+++-++.++..|.+...
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 666666666677788877667666664321 11 11112233444444433222 236677778999998876655
Q ss_pred cccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000133 1517 CRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1596 (2100)
Q Consensus 1517 ~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls 1596 (2100)
.. ++..-...++-|++..++-.+.+-..-+.=+.+... .+++.+-.-...++|.. .++..+-
T Consensus 1164 ~~--lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~-----------ealDt~R~s~aksspmm-----eTi~~ci 1225 (1702)
T KOG0915|consen 1164 KE--LKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIET-----------EALDTLRASAAKSSPMM-----ETINKCI 1225 (1702)
T ss_pred hh--hcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHH-----------HHHHHHHHhhhcCCcHH-----HHHHHHH
Confidence 53 333445556666666665444443322211111111 11111111111111111 1222222
Q ss_pred cCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhh-cccchhh-hcc-cHHHHHHHhhcCCHHHHHHHHHHH
Q 000133 1597 LTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSIL-QFSSEFY-LEV-PVAVLVRLLRSGSEGTVIGSLNAL 1673 (2100)
Q Consensus 1597 ~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~-~~~~~~~-~~~-~v~~Lv~ll~~~~~~~~~~a~~aL 1673 (2100)
..-+..+..+ .+|.+.++++.+. +...... ++..++-++ +.+.++. ..| -+..++-.+++.++.++.....|.
T Consensus 1226 ~~iD~~vLee-lip~l~el~R~sV-gl~Tkvg--~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1226 NYIDISVLEE-LIPRLTELVRGSV-GLGTKVG--CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred HhhhHHHHHH-HHHHHHHHHhccC-CCCcchh--HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 2222223322 5788888887632 2222222 222333332 2222221 111 245556666777888888888888
Q ss_pred HHhccCCh
Q 000133 1674 LVLESDDG 1681 (2100)
Q Consensus 1674 ~~L~~~~~ 1681 (2100)
..|.+-..
T Consensus 1302 G~L~k~Ss 1309 (1702)
T KOG0915|consen 1302 GYLAKFSS 1309 (1702)
T ss_pred HHHHhcCC
Confidence 88876444
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=4 Score=53.34 Aligned_cols=138 Identities=16% Similarity=0.051 Sum_probs=92.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 607 VETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 607 i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
+..|..+|+ ++.-+.++....++..+...+++.++ -++..|+..+.+... ..-+.+.|.-+....+..
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a---- 461 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKA---- 461 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCC----
Confidence 666777665 46678888999999998887676544 467788888866532 233444444443322210
Q ss_pred HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 686 AVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
..-...+..+...+--.+..+|..|..||.++....+.-. ..+...|.+++.+.++++|..|.-+|..+.
T Consensus 462 ~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1123445555555555678899999999999984433222 466777888998899999999998888776
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.093 Score=68.98 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=155.8
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQL 565 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L 565 (2100)
+|..++.|-+ .-.|-+|...|..+-...+=.-..-..-|..|..++||++...+.|-.-+.+=..+
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKI------------ 539 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKI------------ 539 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHH------------
Confidence 4444554432 23456677777777654333333345678889999999987666553222221121
Q ss_pred HHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 566 TALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS---TKEETQAKSASALAGIFETRKDLRES 642 (2100)
Q Consensus 566 ~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s---~~~~~~~~Aa~aL~~L~~~~~~~~~~ 642 (2100)
.++.+ ..|.-..+.+|...++..|.. -+++-|.-|+..|+.+.++.+-.+++
T Consensus 540 ----------------------LAvD~---SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~a 594 (1387)
T KOG1517|consen 540 ----------------------LAVDP---SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKA 594 (1387)
T ss_pred ----------------------HhcCc---hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHH
Confidence 11111 012223334445555555544 24688889999999999998778888
Q ss_pred HHhcCchHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-
Q 000133 643 SIAVKTLWSVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD- 720 (2100)
Q Consensus 643 ~~~~g~v~~Lv~lL~~~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~- 720 (2100)
..+.+.+.+....+.++ .+-.+.-.+-+|+.|-.... ..|-.-.+.++.+.|+.++.++.+|||..|..||+.++.+
T Consensus 595 cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~-~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 595 CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD-EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc-hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 88889999999999885 56677789999999976553 4555566788999999999999999999999999999843
Q ss_pred ----cHHHHHH-----------HHcCcHH----HHHHHHccCChhHHHHHHHHHHHHHhcC
Q 000133 721 ----SEVSEKA-----------IAEEIIL----PATRVLCEGTISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 721 ----~~~~~~~-----------v~~~~v~----~L~~ll~~~~~~~~~~Aa~aL~~l~~~~ 762 (2100)
.+..... ..++.+. .++.++++.++-+|.+.+-+|.+.....
T Consensus 674 ~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 1111111 1223333 5666667777777777777777766443
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.019 Score=69.91 Aligned_cols=306 Identities=15% Similarity=0.152 Sum_probs=184.3
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC
Q 000133 162 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 241 (2100)
Q Consensus 162 ~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 241 (2100)
.++.+|..++.+-...|.-+.+...++.|+++|+.|+..+.--+...+.+.+....+-.+.+.+.|.+..|+.++.+. |
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-D 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-D 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-h
Confidence 456677888766666666678889999999999998777777788888888888887888899999999999999875 4
Q ss_pred HHHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhcccc
Q 000133 242 ASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 320 (2100)
Q Consensus 242 ~~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~ 320 (2100)
..+|....|+|+++..++.++ +-.....-|+..++.....++ -.+|+.....|+|+..+.... +.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc---------~~vq~q~lQilrNftc~~~kn-Ek---- 552 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC---------FKVQHQVLQILRNFTCDTSKN-EK---- 552 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc---------cccHHHHHHHHHhcccccccc-cc----
Confidence 589999999999999877654 335667788999999987764 678999999999987632110 00
Q ss_pred ccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCch-hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcc
Q 000133 321 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPL-IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS 399 (2100)
Q Consensus 321 ~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~-~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~ 399 (2100)
+-++.. ..+|- -....|.+-++...+-.+++..-.-+...+.+...+..+.+.
T Consensus 553 --skdv~~------------------------K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 553 --SKDVFI------------------------KATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred --cceeEE------------------------ecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 000000 01221 244455555666666555665444333335555544433332
Q ss_pred c-cHHHHHHhhc----C-------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh---CCCCHHHHHHHHH
Q 000133 400 E-AKRLLVGLIT----M-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL---GLSSEQQQECSVA 464 (2100)
Q Consensus 400 g-~i~~Lv~lL~----~-------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~v~~~A~~ 464 (2100)
. .+..+.+.|. . .+..+--.-.....++..+.+.+.+.+.-. |.+=..= ..++.+.-.+..|
T Consensus 607 ~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw 683 (743)
T COG5369 607 EDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIW 683 (743)
T ss_pred HHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCCCchhhhhccce
Confidence 1 2222222221 0 011121122223333333323332221100 2221111 1235566667777
Q ss_pred HHHHhccCCcc----------cHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 465 LLCLLSNENDD----------SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 465 aL~nLs~~~~~----------~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
...|+.. ..+ ..+.+.+.|.-+.|+.+-.++++.+|+.+-.+|.++-
T Consensus 684 ~~in~~w-~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 684 IIINLSW-KEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred EEEeccc-CccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 7777653 222 2333444444455555556678999999999998873
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0089 Score=77.21 Aligned_cols=117 Identities=21% Similarity=0.371 Sum_probs=80.6
Q ss_pred CCCceeeeeccchhh--------hhhCCCc-ceEEEecC---CCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMK--------QSVGNPS-VYCKLTLG---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~--------~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+..|+|+|+-+..+. ..|.... -+...-+| |...++||+|.+|-||+|++.|.|.+..|. =-.+.++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 356899998775542 2232222 33444555 567789999999999999999999888643 3478999
Q ss_pred eecCCccCCccc-ceEEEEEeeEEeecccccceeecCC-CCCCCCcceEEEEEec
Q 000133 2046 CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2046 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2098 (2100)
|++++.++++.| |..+|+++.... |-. ...|... ++.=++-+|.|+|.|.
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~-GyR--~VpL~~~~G~~l~~a~Llv~f~~~ 599 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRP-GIR--SVPLHDKKGEKLKNVRLLMRFIFV 599 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcC-Cce--eEeCcCCCCCCCCCEEEEEEEEeC
Confidence 999998877665 999999987654 322 4455322 3332334688888873
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.061 Score=63.12 Aligned_cols=151 Identities=18% Similarity=0.128 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+..+...+.+....+...|+.++..++..-....+ ......+|+|++.+.+.+..++..|..+|..++.+.+...+.
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~-~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-- 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE-PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-- 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH--
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH--
Confidence 45666677777788899999999999876443322 224468999999999999899999999999998765311111
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH---H--HHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 687 VARDALSPLVVLAGSPVLEVAEQATCALANLILDSE---V--SEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~---~--~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.++.+...+.+.++.+|..++..|..++...+ . .....-+.+++.+.+.+.+.++++|..|-.++..+...
T Consensus 132 ----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 132 ----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp ----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 16677788899999999999999999884322 1 11222367899999999999999999999999888765
Q ss_pred Ccc
Q 000133 762 RKI 764 (2100)
Q Consensus 762 ~~~ 764 (2100)
.+.
T Consensus 208 ~~~ 210 (228)
T PF12348_consen 208 FPE 210 (228)
T ss_dssp H-H
T ss_pred CCH
Confidence 443
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.17 Score=65.14 Aligned_cols=272 Identities=15% Similarity=0.125 Sum_probs=164.6
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhH----------ccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHH
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLL----------TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 234 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL----------~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 234 (2100)
.+|+-++.+..+ ...+....++..|.++- ...++.+...|.++|+|....++..+..+.+.|..+.+++
T Consensus 3 ~~LRiLsRd~~~-~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRDPTG-LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccCccc-chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 445555554432 33355555566666655 3467889999999999999999989999999999999999
Q ss_pred HhcCCC----CHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchh--------hhhhhHHHHHHHHH
Q 000133 235 LLGSGN----EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFM--------QGEYAQALQENAMC 301 (2100)
Q Consensus 235 lL~~~~----~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~--------~~~~~~~l~~~a~~ 301 (2100)
.|+... +.++..-....|.-++...++.+..+++. +|+..++..+...-+... ..+........+..
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK 161 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK 161 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence 998762 35788889999988887777777666654 888888777643321110 01234455666777
Q ss_pred HHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhc----CCCCChHHHH
Q 000133 302 ALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQF----KPRLPFLVQE 377 (2100)
Q Consensus 302 aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL----~~~~~~~vq~ 377 (2100)
.+.|+....+.... ......+..++.++ ..++ ...+......
T Consensus 162 llFNit~~~~~~~~---------------~~~~~~~~~l~~il-------------------~~~l~~~~~~~~l~~~~~ 207 (446)
T PF10165_consen 162 LLFNITLHYPKSVP---------------EEFSPSIPHLVSIL-------------------RRLLPPPPSSPPLDPPHS 207 (446)
T ss_pred HHHHhhhccCcccc---------------hhhhHHHHHHHHHH-------------------HHHhccCCCCCcchhhHH
Confidence 77777653221110 01122233333322 2221 1111223455
Q ss_pred HHHHHHHHH-hCCCcc-----------chhhhccccHHHHHHhhcC-----C---CHHHHHHHHHHHHHhhccCccchHH
Q 000133 378 RTIEALASL-YGNPLL-----------SIKLENSEAKRLLVGLITM-----A---TNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 378 ~aa~aL~~L-~~~~~~-----------~~~l~~~g~i~~Lv~lL~~-----~---~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.++.+|.++ ..+... ...-.....+..|+.+|+. . -.+.....+..|.+++..+...++.
T Consensus 208 ~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~ 287 (446)
T PF10165_consen 208 HAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKY 287 (446)
T ss_pred HHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHH
Confidence 556666555 111111 0111222345555555541 1 1244556677777777776665555
Q ss_pred HHh---------------CCcH-HHHHHhhCCCCHHHHHHHHHHHHHhcc
Q 000133 438 LQG---------------REGI-QLLISLLGLSSEQQQECSVALLCLLSN 471 (2100)
Q Consensus 438 i~~---------------~g~i-~~Lv~lL~s~~~~v~~~A~~aL~nLs~ 471 (2100)
+.. .+.+ ..|++++.++.+.++..++..|..||.
T Consensus 288 lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 288 LRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 543 2233 689999999889999999999999985
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0067 Score=53.19 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 704 LEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 704 ~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
+.+|..|+++|+++........+....++++.|..+++++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5799999999999887777667778899999999999999999999999999865
|
... |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.26 Score=62.92 Aligned_cols=183 Identities=13% Similarity=0.165 Sum_probs=121.0
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhC
Q 000133 363 LVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR 441 (2100)
Q Consensus 363 Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 441 (2100)
+++.-..+.-+.+++..+..++-. +... .++-+.+-+++.+.++-.|......++--..+..+ .
T Consensus 489 m~~Ya~ETQHeki~RGl~vGiaL~~ygrq--------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------n 553 (929)
T KOG2062|consen 489 MLTYAQETQHEKIIRGLAVGIALVVYGRQ--------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------N 553 (929)
T ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHhhhh--------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------h
Confidence 333333333445566666666544 3322 23444555678888998888877777654444333 3
Q ss_pred CcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhH
Q 000133 442 EGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 442 g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
++|..|++. ..+.+++|++.|+.+|+-++..+++ ..|..+++|..+ ++.+|..++.+|+-.|.. ...+
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-tG~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAG-TGLK 623 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC-CCcH
Confidence 778888887 7788999999999999999876666 578888888755 999999999999998874 3444
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCCcch
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDLPES 576 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~~~~ 576 (2100)
.++ ..|-.+..+...-+++.|+-++.-+..+..+ +...++..++.+.+.+.
T Consensus 624 eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 624 EAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 332 2222333355556899998888765443322 44555666676666654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.031 Score=65.67 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=113.7
Q ss_pred CCCCHHHHHHHHHHHHHhccCC--cccHHHHHhc--CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 452 GLSSEQQQECSVALLCLLSNEN--DDSKWAITAA--GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~--~~~~~~i~~~--g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
.+.+.+.+..+..-|..+..++ ......+.+. ..+..+...+.+....+...|+.++..++......-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5567788888888888887655 2222222111 355677777777777788889999999886422221111 2347
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--CCc-HHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhHHHHhhhc
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TAT-ISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSAA 603 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~--~~~-i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~ 603 (2100)
+|.|+..+.++..-+++.|..+|..++.+.. +.. .+.+...+.+.++.+|..+...+..+....+ ....+.....-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 7999999999888999999999999998766 444 4556667888889999999999888766554 11111111111
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
...++.+..++.++++++|+.|-.++..+....++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 23478888899999999999999999999765443
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.014 Score=57.41 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 459 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE--SGSAKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+...+.+|+||+..++..+..+.+.||+|.+++... +.+|-+||+|.+++.||+..+++++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999999999999999999999999999864 458999999999999999999999988765
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.62 Score=56.42 Aligned_cols=249 Identities=20% Similarity=0.182 Sum_probs=168.9
Q ss_pred HHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-----c----cHHHHHhcCChHHHHHhcc
Q 000133 424 LLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-----D----SKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 424 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-----~----~~~~i~~~g~i~~Lv~lL~ 494 (2100)
+..++.- |+....+++.++++.|+.+|.+.+.++....+..|..|+..+. + ...++++.+.++.|++-++
T Consensus 108 mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 108 MHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred HHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 3344443 6666778899999999999999999999999999999974221 1 2567788899999999886
Q ss_pred CCCHHHHH------HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCC-------
Q 000133 495 SGSAKAKE------DSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDT------- 559 (2100)
Q Consensus 495 ~~~~~vre------~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~aL~~L~~~~~~------- 559 (2100)
.-++.+++ .+...+.|+....++....+++.|.+..|+.-+... -..-+..|..+|.-+..+++.
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 55444444 567778888887788888888888888877754432 234577788888777665542
Q ss_pred -CcHHHHHHH---hhcCC------cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Q 000133 560 -ATISQLTAL---LTSDL------PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 629 (2100)
Q Consensus 560 -~~i~~L~~l---L~~~~------~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL 629 (2100)
.++..++.- -+..+ .+.-++...||+.+..... -+..+....|+....-+++. ....+..+..+|
T Consensus 267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~----nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL 341 (536)
T KOG2734|consen 267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA----NRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL 341 (536)
T ss_pred cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh----hhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence 233333221 11222 2344556677775544333 24456677888877777766 556777888999
Q ss_pred HHHhcCCh--hhHHHHHhcCchHHHHHhhc-CCCH---------HHHHHHHHHHHHHhcCC
Q 000133 630 AGIFETRK--DLRESSIAVKTLWSVMKLLD-VGSE---------CILVEASRCLAAIFLSV 678 (2100)
Q Consensus 630 ~~L~~~~~--~~~~~~~~~g~v~~Lv~lL~-~~~~---------~v~~~aa~aL~~L~~~~ 678 (2100)
-....+++ +++..+++.+++..+..++. .+++ ++-...+..|.++....
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888766 68888998888888777763 2221 24455666666665543
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.4 Score=53.81 Aligned_cols=189 Identities=19% Similarity=0.112 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHH
Q 000133 616 STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVARDALSP 694 (2100)
Q Consensus 616 s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~ 694 (2100)
+..+..+..+|.++.++....-..... .+.-..+.......++. .-++.+|.++++-+.-|..-.....++ ..+...
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn-~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv-~~aa~~ 437 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPN-DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV-ADAANA 437 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCC-cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH-HHHHHH
Confidence 345667778899998887532111000 00012333333333222 235566667776666665444444333 345666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHh----cC-cH---HHHHHHHcCcHHHHHH---HHccCChhHHHHHHHHHHHHHhcCc
Q 000133 695 LVVLAGSPVLEVAEQATCALANLI----LD-SE---VSEKAIAEEIILPATR---VLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 695 Lv~ll~~~~~evr~~aa~aL~~L~----~~-~~---~~~~~v~~~~v~~L~~---ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
....+.+..-..|+.++|+++||. .+ +. ....+. ...+..+.+ ....+..+++.+|.++|.+++.-..
T Consensus 438 il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq 516 (728)
T KOG4535|consen 438 ILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ 516 (728)
T ss_pred HHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH
Confidence 667777777789999999999995 22 22 222222 222333322 2333445589999999999885333
Q ss_pred cchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHc
Q 000133 764 IDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRS 807 (2100)
Q Consensus 764 ~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~ 807 (2100)
.-.+..-....++.+..++...-......++-++..++-||.++
T Consensus 517 ~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 517 PIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 11110000122333333333333333333448888888888443
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.31 Score=62.71 Aligned_cols=252 Identities=17% Similarity=0.140 Sum_probs=157.5
Q ss_pred HHHHHHhCCCccchhhhccccHHHHHHhh----------cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 381 EALASLYGNPLLSIKLENSEAKRLLVGLI----------TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 381 ~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL----------~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
++|.-+.+.+.....+....++..|..+- ...+..+...|.+||.|+...++..++.+.+.|+.+.++..
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 34444556666666666666666666554 34578999999999999999999999999999999999999
Q ss_pred hCCC-----CHHHHHHHHHHHHHhccCCcccHHHHHhc-CChHHHHHhccCC-----------------CHHHHHHHHHH
Q 000133 451 LGLS-----SEQQQECSVALLCLLSNENDDSKWAITAA-GGIPPLVQILESG-----------------SAKAKEDSASI 507 (2100)
Q Consensus 451 L~s~-----~~~v~~~A~~aL~nLs~~~~~~~~~i~~~-g~i~~Lv~lL~~~-----------------~~~vre~A~~a 507 (2100)
|+.. +.++.......|.-++....+.+..+++. +++..++..+... +...-..+...
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 78888889999888887666666555544 7887777755311 22334467888
Q ss_pred HHHHhcCChhhHHHHHhCCcHHHHHHHhhcC---------ChhHHHHHHHHHHHHhcC-------------------CCC
Q 000133 508 LRNLCNHSEDIRACVESADAVPALLWLLKNG---------SANGKEIAAKTLNHLIHK-------------------SDT 559 (2100)
Q Consensus 508 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~Aa~aL~~L~~~-------------------~~~ 559 (2100)
+.|++.+.+.... -...+.++.|+.++..- .......+..+|.|+-.. .+.
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 8899876544332 01244556666655421 223566777777776210 011
Q ss_pred CcHHHHHHHhhc----CC-c---chHHHHHHHHHHHHhccCchhHHHHh---------------hhccchH-HHHHHHhc
Q 000133 560 ATISQLTALLTS----DL-P---ESKVYVLDALKSMLSVVSFSDILREG---------------SAANDAV-ETMIKILS 615 (2100)
Q Consensus 560 ~~i~~L~~lL~~----~~-~---~~~~~a~~aL~~l~~~~~~~~~~~~~---------------i~~~~~i-~~Lv~lL~ 615 (2100)
..+..|+.+|.. .. . +.-.-....|..++... +..|.. ....+.+ ..|++++.
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 344555555432 11 0 11111222222222211 111111 1123334 47899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCC
Q 000133 616 STKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 616 s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+..+.++..++..|..||..+
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 988999999999999999653
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.6 Score=54.22 Aligned_cols=347 Identities=15% Similarity=0.156 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccch-----HHHHhCCcHHHHH
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLW-----RALQGREGIQLLI 448 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~-----~~i~~~g~i~~Lv 448 (2100)
-.++...+|+.++.++..-+.+.. ..+..+-...+ ..+.+.....+.+|.++...+.... ....+...++.+.
T Consensus 18 ~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~ 96 (415)
T PF12460_consen 18 NYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLF 96 (415)
T ss_pred HHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHH
Confidence 467778888888776665433322 12222222222 1255666777778877765543322 1222333677777
Q ss_pred HhhCCC-------CHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHHHHhcc----------CCC--HHHHHHHHHHH
Q 000133 449 SLLGLS-------SEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLVQILE----------SGS--AKAKEDSASIL 508 (2100)
Q Consensus 449 ~lL~s~-------~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~Lv~lL~----------~~~--~~vre~A~~aL 508 (2100)
++.-.. ++.+...+...+..+....+ +.++.+ +..+..++- ..+ .+.+......+
T Consensus 97 ~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (415)
T PF12460_consen 97 ELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILF 171 (415)
T ss_pred HHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCccccccccccccHHHHH
Confidence 765321 23444445555555544333 233333 223333332 111 11222222222
Q ss_pred HHH-hcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-CcHHHHHHH----h-hcCCcchHHHH
Q 000133 509 RNL-CNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-ATISQLTAL----L-TSDLPESKVYV 580 (2100)
Q Consensus 509 ~~L-~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~-~~i~~L~~l----L-~~~~~~~~~~a 580 (2100)
..+ +.-.++..-. .....+..++.+..+ .++..+..++..++.+...-.. ..+..++.. + .......+..+
T Consensus 172 ~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 250 (415)
T PF12460_consen 172 SAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQA 250 (415)
T ss_pred HHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHH
Confidence 222 2222222110 011256677777655 4577888899999988876322 223333332 2 23334455555
Q ss_pred HHHHHHHHh---ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-------------HHHHH
Q 000133 581 LDALKSMLS---VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-------------RESSI 644 (2100)
Q Consensus 581 ~~aL~~l~~---~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~-------------~~~~~ 644 (2100)
.+.+.-++. ..+++. ....+..|++++.+ +++...++.++.-+..+.++. ++.+.
T Consensus 251 ~~~~~Wi~KaLv~R~~~~-------~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 251 LEILIWITKALVMRGHPL-------ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred HHHHHHHHHHHHHcCCch-------HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 555544332 111111 11236667777766 788899999999998874432 22222
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
...+|.|++..+..+...+.....+|..+..+.+..--. ---...+|.|++-+..++++++..+..+|..++.+.+..
T Consensus 322 -~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 322 -TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred -HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 247999999998887778888899999998877642211 111457888889999999999999999999999765443
Q ss_pred HHHHHcCcHHHHHHH
Q 000133 725 EKAIAEEIILPATRV 739 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~l 739 (2100)
..-.-..+|+.|+++
T Consensus 400 i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333334666666553
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.017 Score=60.33 Aligned_cols=89 Identities=16% Similarity=0.295 Sum_probs=67.2
Q ss_pred ceeeeeccchhh--hh--hCC--Ccce-EEEecCC-CCCccccccccCCC--ccccccceeccccCCCC-----------
Q 000133 1981 LVVIIKRGNNMK--QS--VGN--PSVY-CKLTLGN-TPPRQTKIVSTGPN--PEWEESFAWSFEIPPKG----------- 2039 (2100)
Q Consensus 1981 ~~~~~~r~~~~~--~~--~~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------- 2039 (2100)
|.|+|++..++. .. .|. +-.| ...-.|+ ....+|.|--++.| |.||+.|.|.|+.||..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 689999998832 22 442 3334 4444454 56677999999999 99999999999998865
Q ss_pred -----------CeEEEEeecCCccCC-cccceEEEEEeeEEe
Q 000133 2040 -----------QKLHISCKNKSKMGK-SSFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2040 -----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2069 (2100)
.+|+|.++++..|++ +.+|.+++++...-.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 488999999999964 556999999886544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.024 Score=71.77 Aligned_cols=115 Identities=21% Similarity=0.426 Sum_probs=77.7
Q ss_pred CCCceeeeeccchh----hhhhC---CCcceEEEec-C---CCCCccccccccCCCccccccceeccccCCCCCeEEEEe
Q 000133 1978 PGTLVVIIKRGNNM----KQSVG---NPSVYCKLTL-G---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~----~~~~~---~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
+..|+|+|+-+..+ .+..| ...-+..+.+ | |...++|+|.+++-||.|+|+|+|.+..| .=-.|.++|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEEE
Confidence 45699999988653 22222 2223444443 3 44445788999999999999999999754 445789999
Q ss_pred ecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCC---CCcceEEEEEec
Q 000133 2047 KNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSG---PSRNLEIEFLWS 2098 (2100)
Q Consensus 2047 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2098 (2100)
++++.++++.| |..+|+++-+.. |--++.--+++| ++-+|=+.|+|+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~-----GyR~VpL~~~~g~~l~~~~Ll~~f~~~ 537 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIE-----GIRAVPLYDERGKACSSTMLLTRFKWS 537 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcC-----CceeEeccCCCcCCCCCceEEEEEEeC
Confidence 99999887766 999999886542 222221113333 345688889886
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.018 Score=46.83 Aligned_cols=39 Identities=38% Similarity=0.626 Sum_probs=35.9
Q ss_pred cccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 474 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 474 ~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
++++..+.+.|+++.|++++.++++++++.++|+|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788999999999999999989999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.027 Score=55.35 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh--CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcC
Q 000133 417 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLL--GLSSEQQQECSVALLCLLSNENDDSKWAITAAG 484 (2100)
Q Consensus 417 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g 484 (2100)
+...++.|+|+|..+...+..+++.||||.++... +..+|-+++.|.+++.||+.++++++..|.+-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 55678899999999999999999999999999965 467899999999999999999999888776543
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.39 Score=64.69 Aligned_cols=313 Identities=15% Similarity=0.090 Sum_probs=185.8
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc---ch
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS---LW 435 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~ 435 (2100)
+++++...++.-....-+..|.+-|..|+..-+.-..+.. .+|.++.++.++..+||..|+.+|..+-..-.+ .-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 4555555544333323477788888877554443334433 588899999999999999999998876543211 11
Q ss_pred HHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccC---CcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHH
Q 000133 436 RALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 511 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L 511 (2100)
..|.-.=..|.|-.++.+ ....++..-+..|..|+.. .-+..+.+..+| ++++.+.+.. .+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g-------~~n~~nset~-------~~- 565 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG-------MLNDPNSETA-------PE- 565 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc-------cccCcccccc-------cc-
Confidence 112222345788888877 4555666666777777631 011111111111 1222222100 00
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc-----CCCCCcHHHHHHHhhcCCcchHHHHHHHHHH
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH-----KSDTATISQLTALLTSDLPESKVYVLDALKS 586 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~-----~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 586 (2100)
... +.....+ ..++-...+.++.++.+-+|+.-...+.-||. .+++-.++.|+..|++.++..|..-.+.+..
T Consensus 566 ~~~-~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 566 QNY-NTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred ccc-chHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 000 1111111 12233455566666677777776777777774 3455678899999999999998887777766
Q ss_pred HHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHH
Q 000133 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666 (2100)
Q Consensus 587 l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 666 (2100)
++...... ..+...+|.|.+.|.++.+.+-..|..+|.-|+.. ...++..-..++.-..-+|..++.=+++.
T Consensus 644 vsi~VG~r------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 644 VSIFVGWR------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred eEEEEeee------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHH
Confidence 55432211 01233488888999999999999999999999975 33333333345555566678888889999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC
Q 000133 667 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP 702 (2100)
Q Consensus 667 aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~ 702 (2100)
++..|..+....... =+.+...|.+-..+..+
T Consensus 716 ~~~iI~~~~~~ls~a----dvyc~l~P~irpfl~~~ 747 (1431)
T KOG1240|consen 716 VLGIIAAIARQLSAA----DVYCKLMPLIRPFLERP 747 (1431)
T ss_pred HHHHHHHHHhhhhhh----hheEEeehhhHHhhhcc
Confidence 999998886543211 12244555555555543
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=95.49 E-value=6 Score=50.89 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=187.0
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccH-
Q 000133 403 RLLVGLITMATN---EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK- 477 (2100)
Q Consensus 403 ~~Lv~lL~~~~~---~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~- 477 (2100)
|.++..|.+.+. ...+....+|..+|....- .+.+.- ..+..|-...+.. +.+.....+.+|.++.....+..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i-~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQI-LETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhH-HHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 455666665433 5677889999999988432 222221 2333333333322 44455556666666643322222
Q ss_pred ----HHHHhcCChHHHHHhccCC-----C--HHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhh---------
Q 000133 478 ----WAITAAGGIPPLVQILESG-----S--AKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLK--------- 536 (2100)
Q Consensus 478 ----~~i~~~g~i~~Lv~lL~~~-----~--~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~--------- 536 (2100)
....+...+|.+.++.-.. + +.+-+.+...+..+....+ +.+..+ +..+..++-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCC
Confidence 2233444777777765322 2 4555555555555554433 333332 333444333
Q ss_pred -cCC------hhHHHHHHHHHHHHhcCCC----CCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 537 -NGS------ANGKEIAAKTLNHLIHKSD----TATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 537 -~~~------~~~~~~Aa~aL~~L~~~~~----~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
..+ .+..--...++..+-.... ...+..++.+.. ..++..+..+.++++.+..--...+....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~----- 229 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDE----- 229 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHH-----
Confidence 111 1111122233333322111 123445555533 34466777777877766554222221111
Q ss_pred chHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh--
Q 000133 605 DAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN-- 681 (2100)
Q Consensus 605 ~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~-- 681 (2100)
.+..+..-. ....+..+..+...+..+.+. --.|........+..|+.++.+ +++...++.+++-+....++.
T Consensus 230 -~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~ 305 (415)
T PF12460_consen 230 -FLDSLLQSISSSEDSELRPQALEILIWITKA-LVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN 305 (415)
T ss_pred -HHHHHHhhhcccCCcchhHHHHHHHHHHHHH-HHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC
Confidence 133333333 233444555555555444432 0011111222357778888877 567889999999887763321
Q ss_pred -----HHHHHHh----CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHH
Q 000133 682 -----REVAAVA----RDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 682 -----~~~~~~~----~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
+-..+.. ...+|.|++..+..+.+.|..-..||.+++.+ |......--+.++|.|++.+..++..++..+
T Consensus 306 ~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~ 385 (415)
T PF12460_consen 306 KENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSS 385 (415)
T ss_pred ccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 0000111 23577777777888888999999999999966 4433333357899999999999999999999
Q ss_pred HHHHHHHHhcCc
Q 000133 752 AAAIARLLHSRK 763 (2100)
Q Consensus 752 a~aL~~l~~~~~ 763 (2100)
...|..++...+
T Consensus 386 L~tL~~~l~~~~ 397 (415)
T PF12460_consen 386 LETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHcCH
Confidence 999999887653
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.02 Score=50.17 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 511 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L 511 (2100)
+.+|..|+++|++++...++ .........++.|+.+|.++++.+|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999854443 34446667899999999999999999999999875
|
... |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.036 Score=45.05 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=36.1
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
++.+..+.+.|++++|+++++++++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3577888899999999999999999999999999999963
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.0056 Score=72.05 Aligned_cols=100 Identities=28% Similarity=0.440 Sum_probs=70.3
Q ss_pred Cceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeec-CCcc
Q 000133 1980 TLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKN-KSKM 2052 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 2052 (2100)
.|+|+|.-..|+--- -|-+.-+.++++= |.....||-++.+.||+|||+|+|.+.--.+.-.|.|++|+ .-|.
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 478888777666422 2223333344332 33334599999999999999999999955566699999999 6677
Q ss_pred CCcccceEEEEEeeEEeecccccceeec
Q 000133 2053 GKSSFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+++-+|-...-|..+..++ .+|-|+|+
T Consensus 261 RNDFMGslSFgisEl~K~p-~~GWyKlL 287 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKAP-VDGWYKLL 287 (683)
T ss_pred cccccceecccHHHHhhcc-hhhHHHHh
Confidence 7888888888887765443 46666664
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.021 Score=72.37 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=62.6
Q ss_pred CCCceeeeeccchhhh-hhCCCc-ceEEEecCCCC----CccccccccCCCccccccceeccccCCCCC-eEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ-SVGNPS-VYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2050 (2100)
-|-|+|.|+...|++. ..|..+ -|.+.++=.+. .++|.+.++..||.|+|.|.|.+...-..+ .+.|.+++++
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d 376 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHD 376 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcc
Confidence 4789999999999984 444433 44443333333 345669999999999999999554223333 7899999999
Q ss_pred ccCCcc-cceEEEEE
Q 000133 2051 KMGKSS-FGKVTIQI 2064 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~ 2064 (2100)
++|+.. +|++.+-.
T Consensus 377 ~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 377 TLGSNDLIGRCILGS 391 (421)
T ss_pred cccccceeeEEEecC
Confidence 999886 58776543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.045 Score=70.71 Aligned_cols=116 Identities=20% Similarity=0.344 Sum_probs=75.7
Q ss_pred CCceeeeeccchh--------hhhhCCCcceEEEec-C---CCCCccccccccCCCccccccceeccccCCCCCeEEEEe
Q 000133 1979 GTLVVIIKRGNNM--------KQSVGNPSVYCKLTL-G---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~--------~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
..|+|+|+-+..+ ..+|....-+..+.+ | |...++||+|.+|-||.|+|.|+|.+.. |.=-.|.+.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~-PeLAllRf~V 530 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTV-PELALLRLEV 530 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEc-CceeEEEEEE
Confidence 4688999877542 222333333443333 3 5667899999999999999999999885 4446899999
Q ss_pred ecCCccCCcc-cceEEEEEeeEEeecccccceeecCC-CCCCCCcceEEEEEec
Q 000133 2047 KNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPE-SKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2047 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2098 (2100)
++++.++++. +|..+|+++.... | |. .-.|... +..=+.-+|=++|+|.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~-G-yR-~V~L~~~~g~~l~~a~Lfv~~~~~ 581 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQ-G-IR-AFPLHSRKGEKYKSVKLLVKVEFV 581 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhC-c-cc-eEEccCCCcCCCCCeeEEEEEEeC
Confidence 9998877655 4999999987543 2 11 1123222 2221234677888873
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.4 Score=54.71 Aligned_cols=317 Identities=16% Similarity=0.118 Sum_probs=183.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
.+|.+...|.+.+.-||++|.-|+..+....... +. ++=..+-++ ....++...++|-..|...- ++.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~L---~p--DapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~Er--- 203 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL---IP--DAPELIESFLLTEQDPSCKRNAFLMLFTTD---PER--- 203 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh---cC--ChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHH---
Confidence 3566677888999999999999999988763221 11 222223333 45668888888877666543 332
Q ss_pred HHhcCChHHHHHhcc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 480 ITAAGGIPPLVQILE---SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~---~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
++.-|..... +-++..+.-.+..+...|..++.-+.. -++.+..+|.+.++.++-.|+.+|..|+..
T Consensus 204 -----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 204 -----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred -----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 2333332222 224666777777788877755555433 467888999988889999999988888654
Q ss_pred CCC--CcHHHHHHHhhc-CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 557 SDT--ATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 557 ~~~--~~i~~L~~lL~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
... .+...++.++.+ .+..++.-...=|..+. ..+..+.+. -+--++.+|.+++-+++..+......|.
T Consensus 274 p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~------l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 274 PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQG------LIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHH------HHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 321 233445555443 33344444333333332 122222222 2445667888999999999999888888
Q ss_pred cCChhhHHHHHhcCchHHHHHhh-------cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLL-------DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL-------~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~ev 706 (2100)
.... .+. ++..|-+-+ .+.+...+..-..++...+...++ .....++.|+..+.+.++..
T Consensus 346 ssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~------~aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 346 SSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE------VAATVVSLLLDFISDSNEAA 412 (948)
T ss_pred hhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH------HHHHHHHHHHHHhccCCHHH
Confidence 7532 221 122222222 112233455556666665554443 23457899999999988865
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc-CChhHHHHHHHHHHHHHhcCc
Q 000133 707 AEQATCALANLILDSEVSEKAIAEEIILPATRVLCE-GTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 707 r~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~-~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
......-+...+..-+.- ...+++.|...+.. ...++-++|+|.+..-.....
T Consensus 413 as~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 333333333333222211 23455555554443 344577889999887765444
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.8 Score=53.04 Aligned_cols=393 Identities=14% Similarity=0.118 Sum_probs=190.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHH----HhhccCChhhHHHHHHHHHHhhcCCc----h
Q 000133 1234 SQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLV----EILNTGLEREQHAAIAALVRLLSENP----S 1305 (2100)
Q Consensus 1234 ~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv----~lL~~~~~~~~~~A~~aL~~La~~~~----~ 1305 (2100)
..+..-|+.+++.+|..|.+-+..+ +.+..-+|.|+ ...-+......+--+..-..+..-.. .
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~---------mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl 93 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIAL---------MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKL 93 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH---------HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCccc
Confidence 4566778899999998886543332 33333444433 33223322333333444445543211 1
Q ss_pred hhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHh
Q 000133 1306 RALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL 1385 (2100)
Q Consensus 1306 ~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 1385 (2100)
...++. +-+++-+=|.+ |++-+|...+..|+.|= .++ --...+|.+...|.+...-+|..|+-++..+
T Consensus 94 ~~EMIL-----vcna~RkDLQH-PNEyiRG~TLRFLckLk-E~E-----Llepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 94 LHEMIL-----VCNAYRKDLQH-PNEYIRGSTLRFLCKLK-EPE-----LLEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred HHHHHH-----HHHHHhhhccC-chHhhcchhhhhhhhcC-cHH-----HhhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 121111 22333333444 57778888877777652 222 2234677778888899999999999888887
Q ss_pred cccHHHHHHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHH
Q 000133 1386 VDDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAEL 1464 (2100)
Q Consensus 1386 ~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~l 1464 (2100)
.....+ + -.++=+.+-..| ...|+..+|+|...|......+ ... .+...+..+.+=.+.....+.++
T Consensus 162 yk~~~~---L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er---Al~-----Yl~~~idqi~~~~~~LqlViVE~ 229 (948)
T KOG1058|consen 162 YKNFEH---L-IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPER---ALN-----YLLSNIDQIPSFNDSLQLVIVEL 229 (948)
T ss_pred Hhhhhh---h-cCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHH---HHH-----HHHhhHhhccCccHHHHHHHHHH
Confidence 743111 1 122222333333 4788889999887776654332 100 11122222222223444444555
Q ss_pred HHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccC-CCCHHH
Q 000133 1465 LRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD-SPAPAV 1543 (2100)
Q Consensus 1465 L~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~-~~~~~v 1543 (2100)
++.-..... ...++-+.++..+|.+.+ +.+.-.|..+|.+++.+++.... ....+++++. ..+-.+
T Consensus 230 Irkv~~~~p----~~~~~~i~~i~~lL~sts--saV~fEaa~tlv~lS~~p~alk~-------Aa~~~i~l~~kesdnnv 296 (948)
T KOG1058|consen 230 IRKVCLANP----AEKARYIRCIYNLLSSTS--SAVIFEAAGTLVTLSNDPTALKA-------AASTYIDLLVKESDNNV 296 (948)
T ss_pred HHHHHhcCH----HHhhHHHHHHHHHHhcCC--chhhhhhcceEEEccCCHHHHHH-------HHHHHHHHHHhccCcch
Confidence 544443111 112345667777776654 55555555555554433222111 1112222221 122223
Q ss_pred HHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChh-HHHhccChHHHHHHhcccCCC
Q 000133 1544 QQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-EIAKEGGVTELSKIILQADPS 1622 (2100)
Q Consensus 1544 q~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n-~l~~~G~i~~Ll~lL~~~~~~ 1622 (2100)
+.-...-|..+. ..+...+ .|.+--.++.|++.+.++|..++.-...|..++.- .+. .-|-+-+...++.
T Consensus 297 klIvldrl~~l~--~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv-----~~Lkke~~kT~~~ 367 (948)
T KOG1058|consen 297 KLIVLDRLSELK--ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV-----QFLKKEVMKTHNE 367 (948)
T ss_pred hhhhHHHHHHHh--hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHhcccc
Confidence 333333333332 1111111 14445567788999999999999998888877632 221 2222223221111
Q ss_pred ---chHHHHHHHHHHHHhhhcccchhh--hcccHHHHHHHhhcCCHHHHHHHHHHHHHhccCChhhH
Q 000133 1623 ---LPHALWESAASVLSSILQFSSEFY--LEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSA 1684 (2100)
Q Consensus 1623 ---~~~~l~e~a~~~L~~i~~~~~~~~--~~~~v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~~~~~~ 1684 (2100)
--...+.....++.--+ ..|. ....|+.++..+++.++..-...+..+.......+..|
T Consensus 368 e~d~~~~yRqlLiktih~ca---v~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr 431 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACA---VKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR 431 (948)
T ss_pred ccccchHHHHHHHHHHHHHh---hcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH
Confidence 11111221222221111 0111 12368889999988887655555555543333333333
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.75 E-value=12 Score=50.25 Aligned_cols=277 Identities=15% Similarity=0.089 Sum_probs=160.6
Q ss_pred hccCChhhHHHHHH-HHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcC
Q 000133 1281 LNTGLEREQHAAIA-ALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1281 L~~~~~~~~~~A~~-aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
|.+.++..+..|+. .+.++..+++-. -..+.+++.+.. .|.++++..--=|........ . -..-+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms---------sLf~dViK~~~t-rd~ElKrL~ylYl~~yak~~P---~-~~lLa 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS---------SLFPDVIKNVAT-RDVELKRLLYLYLERYAKLKP---E-LALLA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH---------HHHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCH---H-HHHHH
Confidence 55666666777665 566677666511 234555665553 466777766555554443321 0 11235
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~ 1439 (2100)
++.+..=+.++++..|..|++.+..+-..+- -..+++++.+.++++++.||+.|+-|+.++=+-+ +....+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~el------~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKEL------LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHE 164 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---Hhhhhc
Confidence 6777777889999999999999988854332 2346899999999999999999999999986443 345556
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC----C--CchhHhHHHHHHHHhhc
Q 000133 1440 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE----F--GPDGQHSALQVLVNILE 1513 (2100)
Q Consensus 1440 ~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~----~--~~~~~~~A~~~L~nL~~ 1513 (2100)
.|.+..+..++.+.++.+...|.-.|.++-... . .+-.......+.+.+ . ..+.+..-.+.|..-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~--a-----~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPEL--A-----HGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchhh--h-----hhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 778888888888887777776655555544330 1 001111122222111 0 02333333344433211
Q ss_pred CCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHH
Q 000133 1514 HPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1514 ~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
.... ....+...+...+...++.+-..++..+-.+....+...... -..++|+.++..+ +......+.=+.
T Consensus 238 ~~~~------s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~--~~~~~l~~Ll~~~-~~~~~~vl~~~~ 308 (757)
T COG5096 238 TTPD------SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFL--ISSPPLVTLLAKP-ESLIQYVLRRNI 308 (757)
T ss_pred CCCC------cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHH--hhccHHHHHHcCC-HHHHHHHHHHhh
Confidence 1111 112234445555667788888888888777765433333221 2236777777655 555555544444
Q ss_pred Hhh
Q 000133 1594 SIA 1596 (2100)
Q Consensus 1594 ~Ls 1596 (2100)
.+.
T Consensus 309 ~~~ 311 (757)
T COG5096 309 QID 311 (757)
T ss_pred HHH
Confidence 433
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.045 Score=73.32 Aligned_cols=114 Identities=19% Similarity=0.301 Sum_probs=84.8
Q ss_pred CCceeeeeccchhhhhhCC-Cc---ceEEEe-cCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQSVGN-PS---VYCKLT-LGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
|++-|+|.+.+.++.+-+. .. -+--++ ++-+.+ .|||+++..||+|||.|-=-+. -.+|+|.|+|+|++.|.
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~g-kT~v~~nt~nPvwNEt~Yi~ln--s~~d~L~LslyD~n~~~ 512 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIG-KTRVKKNTLNPVWNETFYILLN--SFTDPLNLSLYDFNSFK 512 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCC-ccceeeccCCccccceEEEEec--ccCCceeEEEEeccccC
Confidence 9999999999999998844 22 222333 333333 8999999999999999977666 67899999999999997
Q ss_pred Cccc-ceEEEEEeeEEeeccccc-ceeecCCCCCCCCcceEEEEEe
Q 000133 2054 KSSF-GKVTIQIDRVVMLGAVAG-EYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2054 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
++.. |+..|.+......+.... .|.+.-++|. .-| |.-++.|
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~-vGr-L~yDl~f 556 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKN-VGR-LTYDLRF 556 (1227)
T ss_pred CcceeeeEEechHHhhhccccccceeeeeccCcc-ceE-EEEeeee
Confidence 7766 999999888887666655 7777655542 112 4455555
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.8 Score=60.82 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=108.2
Q ss_pred hCCCCHHHHHHH-HHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHH
Q 000133 451 LGLSSEQQQECS-VALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVP 529 (2100)
Q Consensus 451 L~s~~~~v~~~A-~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~ 529 (2100)
+.+.+...+..| -.++..++.+.+ . .. -.+.+++...+.+.+++.-.-.-|.+.+...|+-. +. ++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-m-ss-----Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-M-SS-----LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-h-HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHH
Confidence 344444444333 356677765433 1 11 24556666666677777766666666665444221 11 344
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHH
Q 000133 530 ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVET 609 (2100)
Q Consensus 530 ~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~ 609 (2100)
.+.+=++++++.+|-.|.++|+.+- .+++. ...+++
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~--------------------------------------~~el~------~~~~~~ 131 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR--------------------------------------VKELL------GNIIDP 131 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC--------------------------------------hHHHH------HHHHHH
Confidence 5555555556666655555554441 01101 123888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 610 MIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 610 Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
+.+++.++++.+|+.|+.|+.++.+-+++. ..+.|.+..+..++.+.++.+...|..++..+.
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999876665 556788999999999999999999999998883
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.07 Score=68.91 Aligned_cols=119 Identities=22% Similarity=0.378 Sum_probs=88.3
Q ss_pred cCCCceeeeeccchhhhhhCCC--------cceEEEecC---CCCCcccc-ccccCCCccccccceeccccCCCCCeEEE
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNP--------SVYCKLTLG---NTPPRQTK-IVSTGPNPEWEESFAWSFEIPPKGQKLHI 2044 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2100)
.| +|.|.|+-+...-..++.+ -++.. .+| |.--.+|| |-.++-+|.|+|+|+|-+. -|.=-.+.+
T Consensus 615 ~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~Ve-I~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~-vPELAliRF 691 (746)
T KOG0169|consen 615 KK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVE-IAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLS-VPELALIRF 691 (746)
T ss_pred Cc-eeEEEEEecCcccCCCCCCcccccCCCCEEEE-EcccccchhhhhceeeccCCcCcccCCeEEEEEe-ccceeEEEE
Confidence 45 6889999888554444333 23333 556 67778899 5567789999999999999 455569999
Q ss_pred EeecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEecCC
Q 000133 2045 SCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLWSNK 2100 (2100)
Q Consensus 2045 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2100 (2100)
+|++.+.-|++.| |..||++..... -|.--+=++-+++.=++-+|=++|.|.++
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~--GyRhVpL~~~~G~~~~~asLfv~i~~~~~ 746 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQ--GYRHVPLLSREGEALSSASLFVRIAIVER 746 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhC--ceeeeeecCCCCccccceeEEEEEEEecC
Confidence 9999999997777 999999987654 24444444444556677889999999875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.93 Score=61.30 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=178.0
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhcc---CCcccHH
Q 000133 403 RLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN---ENDDSKW 478 (2100)
Q Consensus 403 ~~Lv~lL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~---~~~~~~~ 478 (2100)
..+...++. .....+..|++.|..++..-.+- ... ...+|.++.++.++..+||..|..+|+.+.. ..+..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334344432 35677889999999988753331 111 2678999999999999999999988887643 2233333
Q ss_pred HHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh-----HHHHHHHHHHH
Q 000133 479 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN-----GKEIAAKTLNH 552 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----~~~~Aa~aL~~ 552 (2100)
.|.-.-..|.|-.++.+. ...+|-.-+..|..|+.- ..|- .+.+---....++.+.+.+ -...-..+|..
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~rF--le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AYRF--LELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HHHH--HHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 444555889999998884 555666566677777642 2221 1111000111112221111 01111222221
Q ss_pred HhcCCCCCcHHH-HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000133 553 LIHKSDTATISQ-LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631 (2100)
Q Consensus 553 L~~~~~~~~i~~-L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~ 631 (2100)
.+.+ ...++.+..+-||..-.+.++-|+.-.... -.+.-.++.|+.+|++.++.+|-.=...+..
T Consensus 578 --------~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~------ksND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 578 --------TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE------KSNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred --------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc------ccccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 2333 334556666678888888888776643311 1122348899999999999998877776665
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQAT 711 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa 711 (2100)
++..-. ..-+....+|.|.+.|.++.+.|...|++++..|+... -..+... .+.++....+|-+|+.=+|..++
T Consensus 644 vsi~VG---~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 644 VSIFVG---WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAV--KDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred eEEEEe---eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHH--HHHHHhhhhheeCchHHHHHHHH
Confidence 554311 11245578999999999999999999999999986532 1222212 23345555678889999999988
Q ss_pred HHHHHHh
Q 000133 712 CALANLI 718 (2100)
Q Consensus 712 ~aL~~L~ 718 (2100)
..+..+.
T Consensus 718 ~iI~~~~ 724 (1431)
T KOG1240|consen 718 GIIAAIA 724 (1431)
T ss_pred HHHHHHH
Confidence 8887765
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.4 Score=51.21 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=148.8
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcC-ChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDDSKWAITAAG-GIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVES-AD 526 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g-~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~-~g 526 (2100)
+++-++-.+.-|+.+|.++.. .++.+..+-..+ .-..++.++++. ..++|.+...+++-++-. +.+...+-+ ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 333344467778999999984 677776665544 345677777764 578899999999999874 555543333 34
Q ss_pred cHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC-chhHHHHhhhcc
Q 000133 527 AVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSAAN 604 (2100)
Q Consensus 527 ~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~ 604 (2100)
.+.-|+++.+.. ..++-+.++..+.|++..+..+.|..++- +.+ +..|...+....- .+++.. -
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~--------~~k~vq~L~erkysDEel~~-d---- 301 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LND--------ISKCVQVLLERKYSDEELVI-D---- 301 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcc--------hHHHHHHHHhcCCChHHHHH-H----
Confidence 567777877763 45677888889999987554444433221 111 2222222222211 111100 0
Q ss_pred chHHHHHHHhcCCCHHHHH---HHHHH-HHHHhcCChh--------hHHHHHhc--CchHHHHHhhcCCCHH-HHHHHHH
Q 000133 605 DAVETMIKILSSTKEETQA---KSASA-LAGIFETRKD--------LRESSIAV--KTLWSVMKLLDVGSEC-ILVEASR 669 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~---~Aa~a-L~~L~~~~~~--------~~~~~~~~--g~v~~Lv~lL~~~~~~-v~~~aa~ 669 (2100)
+..+-+-|.....++.. .-+.. =+.+++.+++ +.+.+.+. .++..|..+++...+. ...-||.
T Consensus 302 --i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~ 379 (432)
T COG5231 302 --IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACS 379 (432)
T ss_pred --HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHh
Confidence 22222222211111100 00010 1122333221 33333333 3788899999777665 3445777
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
-+..+.+..|+.+.. +...|+-..++.++.+++++||.+|..|+..++
T Consensus 380 Di~~~Vr~~PE~~~v-l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 380 DIFQLVRASPEINAV-LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHhCchHHHH-HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 888888887766666 888999999999999999999999999998765
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.36 E-value=15 Score=47.71 Aligned_cols=204 Identities=16% Similarity=0.097 Sum_probs=130.1
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
+.+..+++-..+++..||..++..|.-+.. .......-+-.+....+..-+.+..+.+|-+|+.+|..+-....+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 566777888889999999999999999884 3333333344455666777777888999999999999997431111
Q ss_pred HHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH-HHHHHHHhccCchhHHHH
Q 000133 522 VESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL-DALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~-~aL~~l~~~~~~~~~~~~ 599 (2100)
+..++..+..++++ +++++++.+ |.+++- ++.+.|.+++--+|-+..+|.-+. ++|-.+ + .+.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaa---LsnI~v--dnsTlp~IveRarDV~~anRrlvY~r~lpki-------d-~r~ 225 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAA---LSNISV--DNSTLPCIVERARDVSGANRRLVYERCLPKI-------D-LRS 225 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHH---HHhhcc--CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-------h-hhh
Confidence 23467788888885 677888754 445543 456788888776665554443322 222211 1 011
Q ss_pred hhhccchHHHHHHHhcCCCHHHHHHHHHHHHH-HhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSSTKEETQAKSASALAG-IFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAI 674 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~-L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L 674 (2100)
... ..-+..+-+-|.+.+..++.++..+|.. .-+ . ..|-++-|++-+ -+.+.++...+..++-..
T Consensus 226 lsi-~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~--------~-~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSI-DKRVLLLEWGLNDREFSVKGALVDAILSGWLR--------F-SDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh--------h-ccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 100 0124555566777888888888887764 111 1 124455555555 556668999999988875
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.3 Score=54.02 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc---
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE--- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~--- 84 (2100)
..++.++|+.+.+.+ .+.|+.++..+..+-...=....+-......+..+.+.++.|..+-+..|+++++-+|-.
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 356888999887754 678899999988777554211111111234577888889888877778888888888733
Q ss_pred chhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHh--hccCC------
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQL--KNGLK------ 154 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL--~~~~~------ 154 (2100)
.+....+.. ...|+|...+.+++ ...|..|+.||.-++.-+-.+. .........+..+|... +....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~--~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE--EETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 122333322 45788888887654 4556677778887666211111 00000001122122221 11111
Q ss_pred -CcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHh
Q 000133 155 -SGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 213 (2100)
Q Consensus 155 -~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~ 213 (2100)
.++.+...++.+-.-|...-+...-.-.-...+|.|..+|.+++.++|..|..+|+-+.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11234444444433343333332111112345999999999999999999999986553
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.064 Score=69.43 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=77.7
Q ss_pred CCCceeeeeccchhh--------hhhCCCc-ceEEEecC---CCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMK--------QSVGNPS-VYCKLTLG---NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~--------~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
+.+|.|+|+-+..+- ..|+... .+..--+| |...++|||++++-||.|+|+|.|.+.. |.=-.|.++
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~v-PELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAV-PELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEc-CceeEEEEE
Confidence 567999999887642 2233323 33344455 4455889999999999999999999885 555689999
Q ss_pred eecCCccCCccc-ceEEEEEeeEEeecccccceeecCCCCCC---CCcceEEEEEe
Q 000133 2046 CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSG---PSRNLEIEFLW 2097 (2100)
Q Consensus 2046 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 2097 (2100)
|++++.++++.| |..+|+++.+.. |-.++.--+++| ++-+|=+.|.|
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~-----GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQ-----GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhC-----ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999998877765 999999987643 222221113333 23457777776
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.22 Score=49.15 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=54.5
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1427 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La 1427 (2100)
...+++++..+.+.+..+|+.|+++|++++..........-..+.+.|+.++.+.++.||..| ..|-++-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 456788899999999999999999999999533333333446778999999999999998887 4454443
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.056 Score=65.54 Aligned_cols=101 Identities=21% Similarity=0.444 Sum_probs=76.7
Q ss_pred CCCceeeeeccchhhhh--hCC-CcceEEEecCCCCCccccccccCCCcccccc-ceeccccCCCC-CeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGN-PSVYCKLTLGNTPPRQTKIVSTGPNPEWEES-FAWSFEIPPKG-QKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 2052 (2100)
||-|-|.|.-..++--. -+. +.+|.-+++|| .|-+|.|.-++.||+|+.. |.|-+|....- +.|.|.+.+|.|+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 88888988877665322 222 55888899986 4678999999999999964 66666655544 4999999999999
Q ss_pred -CCcccceEEEEEeeEEeec----------ccccceee
Q 000133 2053 -GKSSFGKVTIQIDRVVMLG----------AVAGEYTL 2079 (2100)
Q Consensus 2053 -~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 2079 (2100)
-++-+|||.|.||-+..+. .+||-|-+
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi 118 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI 118 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence 5677899999999876542 35676666
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.095 Score=69.14 Aligned_cols=99 Identities=22% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCceeeeeccchhhhhhCC-------CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGN-------PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
=|+|-+|||-.+-+++.+.. ...+.-+.+++.+-=.| +++.||+|+|.|---.. -+..-.+++.||+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~a-h~~~~~~~f~vk~-- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCA-HPLDSTITITLKT-- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEee-eecCCcEEEEEec--
Confidence 48999999988756555441 13455666665444444 77889999999976554 2222368999999
Q ss_pred ccCCcccceEEEEEeeEEeecc-cccceeecCCCC
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGA-VAGEYTLLPESK 2084 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2084 (2100)
|-.-+|++.|+.++++.-+. +.|-|.+..+++
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~ 115 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENG 115 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence 56668999999999988656 999999977754
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.28 Score=48.42 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccC
Q 000133 664 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEG 743 (2100)
Q Consensus 664 ~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~ 743 (2100)
++.+..+|...+.+.+.. ..-.-...+++++..+.+++..||..|+.+|.|++.......-..-+++.+.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455666666666555332 222334578999999999999999999999999983322111113478999999999999
Q ss_pred ChhHHHHHHHHHHHHHh
Q 000133 744 TISGKTLAAAAIARLLH 760 (2100)
Q Consensus 744 ~~~~~~~Aa~aL~~l~~ 760 (2100)
++.+|..| .-|-++++
T Consensus 81 d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLLK 96 (97)
T ss_pred chhHHHHH-HHHHHHhc
Confidence 98887765 67777664
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.59 Score=57.79 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=103.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
+-+++.+.++-.|.+.+.+++.-..+..+ .|.+..|+.. ..+.+++++++|+.+|+-+|..+++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------
Confidence 44566777777777777666654444322 3678888886 7788999999999999999875544
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--- 559 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--- 559 (2100)
.++..+++|..+ ++.+|...+.+|+-.|..... +. ++..|-.++.+...-+++.|+.+++-+..+..+
T Consensus 586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-KV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-HH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 677788887654 899999999999988875322 21 345555667777888999999998877655544
Q ss_pred ----CcHHHHHHHhhcCCcc
Q 000133 560 ----ATISQLTALLTSDLPE 575 (2100)
Q Consensus 560 ----~~i~~L~~lL~~~~~~ 575 (2100)
+.+..+..++.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 658 PNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhHHHHHHHHHHHHhhhhHh
Confidence 3344455555544443
|
|
| >PRK09169 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.86 E-value=58 Score=48.74 Aligned_cols=219 Identities=21% Similarity=0.130 Sum_probs=101.4
Q ss_pred cccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHH-HHHHhhcC
Q 000133 1142 TSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATD-LLGILFSS 1220 (2100)
Q Consensus 1142 ~~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~-ll~~l~~~ 1220 (2100)
.....+..+++-+++-|+.......+..+-.+++. ++..+.. ++.-.+..+++.|+.-+....+..... +-.-|-.+
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~-~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~ 237 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLAS-DSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADE 237 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc-CHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 44566778888887666655444445544445544 4433333 345567778888887666554444433 44446566
Q ss_pred HHHHhhhcccCcHHHHHHHHh-cCCHHHHHHHHHHHHH-hhcchhhhhhhhhcCChHHHHHhhccCC-hhhHHHHHHHH-
Q 000133 1221 AEIRRHESAFAAVSQLVAVLR-LGGRGARYSAAKALES-LFSADHIRNAESARQAVQPLVEILNTGL-EREQHAAIAAL- 1296 (2100)
Q Consensus 1221 ~~~~~~~~~~~al~~Li~~L~-~~~~~~r~~Aa~aL~~-L~~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL- 1296 (2100)
+..+..+ +..-+.-+++.|. -.+...-..|+..|.. |+....-+. -.+++.|...+..|..-+ .+..+.|+..|
T Consensus 238 ~~l~~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~-~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA 315 (2316)
T PRK09169 238 PGLLQSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRL-ALDPQGVANALNALSKWPDTEACRQAAEALA 315 (2316)
T ss_pred hHHHHhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhh-hcCHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6665432 3445556666664 2222222334444433 332223222 244556666666664422 22233333333
Q ss_pred HHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChh-hHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh
Q 000133 1297 VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSME-LKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV 1368 (2100)
Q Consensus 1297 ~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~-~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~ 1368 (2100)
..|.........+ +...+.-.+.-|+.-++.+ .+..+..+...|..++..+..+.....-+.|-.+=+
T Consensus 316 ~rL~~~~~l~~~~----~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSK 384 (2316)
T PRK09169 316 ERLAQERGLLQAM----NAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSK 384 (2316)
T ss_pred HHHHhChhhhhhC----CHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHc
Confidence 3343322221111 2222322223333323333 333344445556556655544444443334433333
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.66 Score=62.71 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=138.3
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh
Q 000133 607 VETMIKILS----STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 607 i~~Lv~lL~----s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
.|.+++..+ .++|++|.+|.-||+.+..-+.++++ ..+|.|...+. ++++.++-.+.-+++-++...+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp-- 993 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-- 993 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc--
Confidence 567777774 45899999999999999877666655 35788999995 8888888888888888876543
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhc
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~ 761 (2100)
+- -..+-+.|..-++++++.+|+.|...|.+|+...-... -|.+..+..++.+++..++.-|-.-..+|..-
T Consensus 994 nl----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 994 NL----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred cc----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 22 24588889999999999999999999999986554433 58899999999999999888877777777755
Q ss_pred CccchhHhhhhhccCcHHHHHHhhhhcc--cccchHhHHHHHHHHHHcCC
Q 000133 762 RKIDYTITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGG 809 (2100)
Q Consensus 762 ~~~~~~~~~~~~~~g~l~~li~~l~s~~--~~v~~~~al~~L~~L~~~~~ 809 (2100)
..+- +..+|.++..|+..+ .+.. ...+..|+.+.+..+
T Consensus 1066 ~n~i---------ynlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1066 GNTI---------YNLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred ccch---------hhhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 4433 667888998888775 4445 677777887765553
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.70 E-value=47 Score=47.23 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=101.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
.+..++..+..+...+|..|.+||..+....+.. +.....-..+..-+.+....||+.|+..++.....+++.....
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 4566778888888999999999999998775442 1111222333344556778999999999987655566655544
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---CChhHHHHHHHHHHHHhcCC
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++ .+..-..+....||.++...++.+|...|+.-. .+...++++.. ....+++.+..++.+++...
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 43 466666677889999999999999987666432 23444555553 33348999999999999976
Q ss_pred CC
Q 000133 558 DT 559 (2100)
Q Consensus 558 ~~ 559 (2100)
-+
T Consensus 963 ~~ 964 (1692)
T KOG1020|consen 963 VP 964 (1692)
T ss_pred CC
Confidence 54
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=93.49 E-value=1 Score=48.24 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=97.9
Q ss_pred hHHHHhCCcHHHHHHhhCCCCH------HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHH
Q 000133 435 WRALQGREGIQLLISLLGLSSE------QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSAS 506 (2100)
Q Consensus 435 ~~~i~~~g~i~~Lv~lL~s~~~------~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~ 506 (2100)
...++..+|+..|+++++++.. +....+..++.+|-. +.-..+.......|...+...... +..+.+.|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe-Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME-HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh-cCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3466788999999999998763 566678888888874 455556677777888888888755 5889999999
Q ss_pred HHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
.|.++...++.....+.++=-++.|+..|+.+++.++..+...+-.|-...
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 999999987777777777778899999999999999998888776665443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.48 E-value=1 Score=55.83 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 565 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESS 643 (2100)
Q Consensus 565 L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~ 643 (2100)
+.+++.+.++-.|-+..-+++ ++.+.. .+.+.+..|+.+ .+++++++|++|..+|+-+|..+.
T Consensus 521 I~ell~d~ds~lRy~G~fs~a-lAy~GT---------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLA-LAYVGT---------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHH-HHHhcC---------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 445566666666655444444 333322 234557888886 788999999999999999997754
Q ss_pred HhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--C
Q 000133 644 IAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--D 720 (2100)
Q Consensus 644 ~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~ 720 (2100)
..++..+++| .+.+..++-..+-+|+--|++..+ ..++..|-.|+++++.=||..|+.+++.+.. +
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 3455556666 677888898999999888776532 2357778889999999999999999999873 3
Q ss_pred cHHHHHHHHcCcHHHHHHHHccCChh
Q 000133 721 SEVSEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 721 ~~~~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
++...+ -.++++.+.++..+...+
T Consensus 654 ~~Lnp~--v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 654 PELNPN--VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cccChh--HHHHHHHHHHHHhhhhHh
Confidence 332222 246677777777665554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=93.05 E-value=3.5 Score=50.37 Aligned_cols=186 Identities=22% Similarity=0.247 Sum_probs=116.5
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC----CC
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS----DT 559 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~----~~ 559 (2100)
+...+..+.+.+...|+.+...|.++..+.. ....+.+ ...+..+.+.++.++.+-+..|+.++.-++-+- +.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3445556666778899999998888875422 1222221 345678888888888777777888888777651 11
Q ss_pred -----CcHHHHHHHhhcCCcc--hHHHHHHHHHHHHhccCch-hHHHHhhhccchHHHHH--HHhcC----------CCH
Q 000133 560 -----ATISQLTALLTSDLPE--SKVYVLDALKSMLSVVSFS-DILREGSAANDAVETMI--KILSS----------TKE 619 (2100)
Q Consensus 560 -----~~i~~L~~lL~~~~~~--~~~~a~~aL~~l~~~~~~~-~~~~~~i~~~~~i~~Lv--~lL~s----------~~~ 619 (2100)
...|.|...+.++... .|..+..||+.++.+.... +-+...+. .+..+. ...+. +++
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 4567788888876554 5567788999877754422 22221111 122111 11221 135
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 620 ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 620 ~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+...|..+-+-|...-+...-.-.....+|.|..+|.+.+.+++..|..+|+-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67777776666666544442111222357999999999999999999999997764
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.2 Score=48.37 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=147.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCC-cHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHHHHHh-c
Q 000133 408 LITMATNEVQEELVRALLKLCNNEGSLWRALQGRE-GIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITA-A 483 (2100)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g-~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~~i~~-~ 483 (2100)
+++.-++-++.-|+.|+.++... ++.+..+...+ .-..++.++++. ...+|.....++..++- ++...+.+-. -
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 34444566788899999998887 45555554333 346788888764 56889999999988874 5554433221 2
Q ss_pred CChHHHHHhccCC-CHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhhcC---ChhHHHHHHHHHHHHhcCCC
Q 000133 484 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
.-+.-|+++.+.. ...+-+-++.++.|++...+ ..-....-.|-+.+-++.|..+ +.+.+..--..=..|-....
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 2455666666654 56667778999999987432 1112222344455556666553 33333222211111111000
Q ss_pred C-CcHHHHHH-----HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHH-HHHHHHHHHHH
Q 000133 559 T-ATISQLTA-----LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEE-TQAKSASALAG 631 (2100)
Q Consensus 559 ~-~~i~~L~~-----lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~-~~~~Aa~aL~~ 631 (2100)
. ..-...+. .+..+.+..+..- -..+.+ +-.-.+...++.|.+++++..+. .-.-||.=+..
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dF---------Ws~N~d--~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~ 383 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDF---------WSTNLD--MLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQ 383 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCc---------hhhhHH--HHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHH
Confidence 0 00000000 0111111000000 000000 00112234578888999877666 33457888888
Q ss_pred HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 632 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 632 L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
+.+..|+.+.-+...|+=..++.++.+++++++-.|.+++-.+
T Consensus 384 ~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 384 LVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 8888899999999999999999999999999999999998765
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.16 Score=49.85 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=55.0
Q ss_pred eeeeeccchhhh---hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccc
Q 000133 1982 VVIIKRGNNMKQ---SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1982 ~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2100)
+|+=.|--++++ ..+.+--|..+..|+.---.||+ ++||.|+|.|.+.+| ++-.+.|.++||..----..|
T Consensus 4 ~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~Pi~ 77 (109)
T cd08689 4 TITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPVPVG 77 (109)
T ss_pred EEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeeccee
Confidence 334455566666 33445678899999886666776 599999999988886 688999999998543333334
Q ss_pred eEEEEEeeE
Q 000133 2059 KVTIQIDRV 2067 (2100)
Q Consensus 2059 ~~~~~~~~~ 2067 (2100)
-.=|.|.++
T Consensus 78 llW~~~sdi 86 (109)
T cd08689 78 LLWLRLSDI 86 (109)
T ss_pred eehhhHHHH
Confidence 444444433
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.5 Score=57.59 Aligned_cols=238 Identities=14% Similarity=0.071 Sum_probs=155.4
Q ss_pred chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH-HhccCCcccHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHH
Q 000133 434 LWRALQGREGIQLLISLLGLSSEQQQECSVALLC-LLSNENDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNL 511 (2100)
Q Consensus 434 ~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~-nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L 511 (2100)
.+...++-|+...|..+.....+..+.....+|. .+. .+..+ ....++++.+.+.... .--.-.+..++.||
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 3445567789999999888777888877777777 332 12111 1124555655554332 12223588899999
Q ss_pred hcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 512 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
+..++..|..+.++-+++.+-.++-..++..+..+...+.||..++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~---------------------------------- 615 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP---------------------------------- 615 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH----------------------------------
Confidence 9998888888888888877777777777888888888888885522
Q ss_pred CchhHHHHhhhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcCchHHHHHhhcCCCHHHHHHHHH
Q 000133 592 SFSDILREGSAA-NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE-SSIAVKTLWSVMKLLDVGSECILVEASR 669 (2100)
Q Consensus 592 ~~~~~~~~~i~~-~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~-~~~~~g~v~~Lv~lL~~~~~~v~~~aa~ 669 (2100)
.++.+.+.+ ..+++....++....+....+++.++..|+......+. ..........++.++.+.+..++.....
T Consensus 616 ---~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 616 ---LLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred ---HHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 112222222 55677777777778888999999999888877666665 4444567888899999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
.+.++..... .--..+.+...++.+...-+-.....++.++.+|.
T Consensus 693 ~~ln~~~~~~-ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 693 IILNLFEALF-EIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hhhhHHHHHH-HHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 9999643321 11111334444444443322233344555554444
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.68 E-value=67 Score=43.91 Aligned_cols=609 Identities=13% Similarity=0.080 Sum_probs=295.4
Q ss_pred CCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhccCCCCc--cccc-------
Q 000133 66 GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDY--VGSK------- 134 (2100)
Q Consensus 66 ~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~~~~~~--~~~~------- 134 (2100)
.++..|..|-.-|..+-|.+ |-++.++..+.+++ ..+|.+|+.=|+|.-.-.-+++ .|++
T Consensus 16 ~d~~~R~~AE~~L~q~~K~p---------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d 86 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQP---------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED 86 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence 34667666666677665444 66777777776554 3458888888888665222222 1211
Q ss_pred -chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhc-cCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHH
Q 000133 135 -IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 212 (2100)
Q Consensus 135 -~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~-~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L 212 (2100)
..+.+. +++.+-. .+..++.....+|.++- .+.++.|. |.++....+|++++......+.-+|..|
T Consensus 87 k~~iren----Il~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp-----~l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 87 KAVIREN----ILETIVQ---VPELIRVQLTACLNTIIKADYPEQWP-----GLLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred HHHHHHH----HHHHHHh---CchHHHHHHHHHHHHHHhcCCcccch-----hHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 122222 3333322 13345655666665543 45567777 5577899999999999999999999988
Q ss_pred hhcCc----chh---hHHhhhchHHHHH----HHhcCCCC--HHHHHHHHHHHHHhhcCChHhHHHHHhCCChHH----H
Q 000133 213 MEEDV----SVC---SRVLAADATKQLL----KLLGSGNE--ASVRAEAAGALKSLSDHCKDARREIAGSNGIPA----M 275 (2100)
Q Consensus 213 ~~~~~----~~~---~~i~~~g~i~~Lv----~lL~~~~~--~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~----L 275 (2100)
+...+ +.+ ..++ ....|.+. +++..++. .++....+.+.+.++.. +.-..+.+.+-+.. .
T Consensus 155 ~k~ye~k~~eeR~~l~~~v-~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~~~~~f~~W~~l~ 231 (1010)
T KOG1991|consen 155 FKTYEWKKDEERQPLGEAV-EELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELSAPETFTSWMELF 231 (1010)
T ss_pred HHHHhhccccccccHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhhCchhHHHHHHHH
Confidence 84322 111 1222 22334433 34444432 46777777777776653 22233333343332 2
Q ss_pred HHhhcCCCc-chh-------hhhhhHHHHHHHHHHHHHhhC--CCcchhhhccccccCCCChhhhhh--hhhhhHHHHHH
Q 000133 276 INATIAPSK-EFM-------QGEYAQALQENAMCALANISG--GLSNVISSLGQSLESCSSPAQVAD--TLGALASALMI 343 (2100)
Q Consensus 276 v~ll~~~~~-e~~-------~~~~~~~l~~~a~~aL~nl~~--~~~~~i~~l~~~~~~~~~~~~~~~--~~gal~~ll~~ 343 (2100)
+..+..+-. |.+ +.-..-+...||...|..+.. |...... -++..+...... ..|.++-.+..
T Consensus 232 l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~-----~~y~~Fa~~f~~n~~~~ile~~lk~ 306 (1010)
T KOG1991|consen 232 LSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVV-----PEYKEFAQMFLKNFAQGILEVFLKI 306 (1010)
T ss_pred HHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccc-----hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 111 111223466777777665544 2111111 001111111111 12333333333
Q ss_pred hccccCCCCCCCchhhHHHHHhh-------------cCCCC--------------------------ChHHHHH------
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQ-------------FKPRL--------------------------PFLVQER------ 378 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~l-------------L~~~~--------------------------~~~vq~~------ 378 (2100)
++.... ..+-+..++-.+... ++++- .+.+|+.
T Consensus 307 l~~~~~--~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 307 LEQWRQ--QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHh--cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 321000 111111222222211 11111 1111110
Q ss_pred -------HHHHHHHHhCCCccchhhhccccHHHHHHhhc------C--CCHHHHHHHHHHHHHhhcc---CccchHHHHh
Q 000133 379 -------TIEALASLYGNPLLSIKLENSEAKRLLVGLIT------M--ATNEVQEELVRALLKLCNN---EGSLWRALQG 440 (2100)
Q Consensus 379 -------aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~------~--~~~~v~~~A~~aL~~L~~~---~~~~~~~i~~ 440 (2100)
+...+-.+. ...-+.. =.+.++.++..+. . .++.-...|.+.+++|+.- ...++ ...+
T Consensus 385 ~~sp~~Aa~~~l~~~~-~KR~ke~--l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE 460 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLV-SKRGKET--LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQME 460 (1010)
T ss_pred cCCCcHHHHHHHHHHH-Hhcchhh--hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHH
Confidence 000000000 0000000 1134555666665 1 3566778888888888842 11121 2222
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
.=.++.+...++++..-+|..|||.+..++... -...-.-..+.....+.|. +.+-.+|-.|+-||..+-.+.+...
T Consensus 461 ~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~ 538 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQAD 538 (1010)
T ss_pred HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhh
Confidence 234567777788888899999999999998321 1111122235566667776 6688899999999999988665554
Q ss_pred HHHHh--CCcHHHHHHHhhcCChhHHHHHH-HHHHHHhcCCCC-------CcHHHHHHHhhc---CCcchHHHHHHHHHH
Q 000133 520 ACVES--ADAVPALLWLLKNGSANGKEIAA-KTLNHLIHKSDT-------ATISQLTALLTS---DLPESKVYVLDALKS 586 (2100)
Q Consensus 520 ~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa-~aL~~L~~~~~~-------~~i~~L~~lL~~---~~~~~~~~a~~aL~~ 586 (2100)
..+.. -+.+..|+.+.+.-..+...... ..++..+..-.| ........++.+ +++.....+..|.|.
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 44432 12333444444432211111111 111111111001 112233344442 233333333334333
Q ss_pred HHh-------ccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC
Q 000133 587 MLS-------VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 659 (2100)
Q Consensus 587 l~~-------~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 659 (2100)
|-. +.+.+++.+.. ..-.+|.+-..|++.-.+.-+.+...+.++....++.--. .=|..+.+.+.+.+.
T Consensus 619 L~Ti~Til~s~e~~p~vl~~l--e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~ 694 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQL--EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDD 694 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhh
Confidence 222 34556544432 1222555555677777777777777777666554433221 225677777777777
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHH----HHhCC--CCHHHHHHHHHHHHHHh
Q 000133 660 SECILVEASRCLAAIFLSVRENREVAAVARDALSPLV----VLAGS--PVLEVAEQATCALANLI 718 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv----~ll~~--~~~evr~~aa~aL~~L~ 718 (2100)
....-....-++-|.....+. ...-.......+. +.+.+ ...+-.+.|+..+..++
T Consensus 695 ~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 695 GIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred hHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 777778888888877554322 1011122233333 34444 23333466777777776
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.27 Score=63.62 Aligned_cols=90 Identities=19% Similarity=0.348 Sum_probs=65.3
Q ss_pred CCCceeeeeccchh-----hhh---hCCCcceEEE-ecC---CCCCccccccccCCCccc-cccceeccccCCCCCeEEE
Q 000133 1978 PGTLVVIIKRGNNM-----KQS---VGNPSVYCKL-TLG---NTPPRQTKIVSTGPNPEW-EESFAWSFEIPPKGQKLHI 2044 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~-----~~~---~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2044 (2100)
+..|+|+|+-+..+ ... +....-+..+ -+| +...++||+++++-+|.| ++.|+|.+..|. =-.|.+
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEE
Confidence 45789999988654 111 2222222222 234 555578999999999999 999999988644 348999
Q ss_pred EeecCCccCCccc-ceEEEEEeeEE
Q 000133 2045 SCKNKSKMGKSSF-GKVTIQIDRVV 2068 (2100)
Q Consensus 2045 ~~~~~~~~~~~~~-~~~~~~~~~~~ 2068 (2100)
.|++.+.++++.| |..+|+++...
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr 533 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELK 533 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhh
Confidence 9999988887777 99999999873
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.3 Score=47.97 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=102.0
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC----ChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC----SMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+|++.+.|..+ +++.+.-.|+.+|.... -+.+|-....+++.+... .++....-.+..+|.-+.
T Consensus 70 aLaLlQ~vAshpetr~~F---l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 70 ALALLQCVASHPETRMPF---LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHH-TTTHHHH---HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHH---HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 777777889999999888 57888888888886542 245777888888888874 455556677889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHHHh--------cCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~--------~g~i~~L~-~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.++.+++-.+.-|...++++..++....-+.. ..++..++ .+.+++++++-+..+.|...|+.+ +..++.
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~a 225 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREA 225 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHH
Confidence 99999999999999999998854433322211 11233333 344588999999999999999988 577776
Q ss_pred HHh
Q 000133 1437 MVK 1439 (2100)
Q Consensus 1437 i~~ 1439 (2100)
+..
T Consensus 226 L~~ 228 (262)
T PF04078_consen 226 LRQ 228 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.39 E-value=89 Score=44.74 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=94.5
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-h-hHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-L-RVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~-~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.+++..++..|+++...+|..|.++|..+..-++ . ...-++.|.. .-+.+.+..+|++|+..++..-
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~DssasVREAaldLvGrfv------- 883 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSSASVREAALDLVGRFV------- 883 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----HhhccchhHHHHHHHHHHhhhh-------
Confidence 5788899999998888999999999999885444 1 2222233323 2334567788998888777432
Q ss_pred ccccchhccCChHHHHHHhhcc-CCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCH-HHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNG-LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQS-STQAHVC 206 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~-~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~-~v~~~a~ 206 (2100)
+.....++...+++..+ .+.+-.|+..+...++.+|...+.... + +....++++. +.+ .++.-++
T Consensus 884 -----l~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i-----~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 884 -----LSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-I-----VDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred -----hccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-H-----HHHHHHHHHHhccchhHHHHHHH
Confidence 22334566777777554 333444899999999999987776544 2 3456666653 223 3788888
Q ss_pred HHHHHHhhc
Q 000133 207 FLLACMMEE 215 (2100)
Q Consensus 207 ~~L~~L~~~ 215 (2100)
.++.++-..
T Consensus 953 etf~klWF~ 961 (1692)
T KOG1020|consen 953 ETFLKLWFT 961 (1692)
T ss_pred HHHHHHhcc
Confidence 888777644
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=6.3 Score=44.11 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH-HHHHH
Q 000133 455 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAV-PALLW 533 (2100)
Q Consensus 455 ~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i-~~Lv~ 533 (2100)
++.+|..++.+++.|+...+.... .-+|.+...|.++++.+|..|..+|..|... +-.+ -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHH
Confidence 467899999999999876654322 2478899999999999999999999999864 2222 12333 77888
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 534 LLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 534 lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
++.+.++.++..|...+..+.....+
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999876333
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.51 E-value=93 Score=43.45 Aligned_cols=515 Identities=14% Similarity=0.125 Sum_probs=237.8
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhc--ccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCC-chh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR-PSC 1433 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~-~~~ 1433 (2100)
+.+++.++.+|.+++...+..++.-+.... +.+. ...++..++.|.++.+.++|++...|-..+--.. +.+
T Consensus 540 s~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~g------ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~ 613 (1251)
T KOG0414|consen 540 SEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDG------AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNS 613 (1251)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCc------HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCc
Confidence 446677777777777777777766554332 2111 1225889999999999999998888887764432 122
Q ss_pred hHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC-CCchhH-hHHHHHHHHh
Q 000133 1434 KLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE-FGPDGQ-HSALQVLVNI 1511 (2100)
Q Consensus 1434 k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~-~~~~~~-~~A~~~L~nL 1511 (2100)
+.. .....++.+.+++...+..-....-+++++|.....+. ..++..|....+..- ..+..| +.++..|+.+
T Consensus 614 ~~~-e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id-----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~ 687 (1251)
T KOG0414|consen 614 KAS-EASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYID-----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMA 687 (1251)
T ss_pred hhh-HHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCcc-----HHHHHHHHHHHHHHhccCchhhhccceeehhhh
Confidence 211 11334556666665544333444445555565533222 223444444431111 123333 3455555544
Q ss_pred hcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccc----cc-cc--cc-cCchHHHHHHhc-----
Q 000133 1512 LEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQL----QK-DP--VT-QQVIGPLIRVLG----- 1578 (2100)
Q Consensus 1512 ~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~----~~-~l--~~-~g~i~~Lv~lL~----- 1578 (2100)
+...... ....++.|++. .-+.+.....++..+++++...-. +. .+ -. +-..+.|-.++.
T Consensus 688 s~s~~~I------v~~~~~~lv~i-glg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~ 760 (1251)
T KOG0414|consen 688 SRSKPSI------VLANLDLLVQI-GLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMK 760 (1251)
T ss_pred hccChhh------hhhhhHHHHHh-ccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCC
Confidence 3221111 01112222221 234466667777777777652111 11 11 11 112244444442
Q ss_pred c--CCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcc--------cCCCchHHHHHHHHHHHHh-hhcccchhhh
Q 000133 1579 S--GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ--------ADPSLPHALWESAASVLSS-ILQFSSEFYL 1647 (2100)
Q Consensus 1579 s--~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~--------~~~~~~~~l~e~a~~~L~~-i~~~~~~~~~ 1647 (2100)
. .-..+.+.|+.++..++..|+- +..-++..+.+..+. ..+.........=..++.. +. -+..
T Consensus 761 ~d~~~~~~~e~ais~Iy~is~~Pe~--la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~li----f~vg 834 (1251)
T KOG0414|consen 761 ADDDWFGVAEVAISAIYSISMLPEV--LATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLI----FIVG 834 (1251)
T ss_pred cchHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHH----HHHH
Confidence 1 2346889999999999998754 222222333333222 0111111100000111111 00 0111
Q ss_pred cccHHHHHHHhhcCCHH-HHHHHHHHHHHhccCChhhHH--HHHHcc-cHHHHHHHHhccCcHHHHHHHHHHHhcCchhh
Q 000133 1648 EVPVAVLVRLLRSGSEG-TVIGSLNALLVLESDDGTSAE--AMAESG-AIEALLELLRSHQCEETAARLLEVLLNNGKIR 1723 (2100)
Q Consensus 1648 ~~~v~~Lv~ll~~~~~~-~~~~a~~aL~~L~~~~~~~~~--~i~~~g-~i~~Li~lL~s~~~~~~a~~lL~~L~~~~~~~ 1723 (2100)
+-++..++.+=..-.-. .|......+- +..+..... ..++.+ +...=..+..+. .+..-..++..++..+=+-
T Consensus 835 ~vAikqlvyiE~~i~~~~kRr~~~~~~~--e~k~~N~~e~~s~t~~~~~~~~e~dlig~t-seDd~~d~i~~icE~eLl~ 911 (1251)
T KOG0414|consen 835 DVAIKQLVYIEVCISKEFKRRKIKTELE--EKKDKNQRENLSNTQRETQFTVELDLIGGT-SEDDLADLISGICEKELLY 911 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCchhhhccccccccCCccccccCCC-cchhHHHHHHHHHHHHHhc
Confidence 12344443332221111 1222222221 111111110 011111 111111122111 2333344555555433111
Q ss_pred h-hhhchhhhhhh-hhhccC----hhhHHHHHHHHHHHHhcchhhhhhHHHhhhhhchHHHHHHhhhcCCCHHHHHHHHH
Q 000133 1724 E-SKATKSAILPL-SQYLLD----PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1797 (2100)
Q Consensus 1724 ~-~~~~~~~i~~L-~~~l~~----~~~~~~~~~~~A~~~l~~~~~~~~l~~~~~~~~a~~~Lv~lL~~~~~~~~~~~A~~ 1797 (2100)
+ .-+-..+. |+ +.+-.+ ++...+.++.+|++.+--+. ..+. .+.++.|++.|+-.+++.+|-+++-
T Consensus 912 gek~lLg~f~-piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fc-----es~l~llftimeksp~p~IRsN~Vv 983 (1251)
T KOG0414|consen 912 GEKSLLGRFA-PIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFC-----ESHLPLLFTIMEKSPSPRIRSNLVV 983 (1251)
T ss_pred ChHHHHHHHH-HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHH-----HHHHHHHHHHHhcCCCceeeecchh
Confidence 1 10111111 22 222211 12344555445544433222 1122 2458899999997779999999999
Q ss_pred HHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCCccchHHHHHHHHHHhcccch--hhhcchhhHHHH-------HHHHhh
Q 000133 1798 ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTI--QEYASSETVRAI-------TAAIEK 1868 (2100)
Q Consensus 1798 aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~~~~~~~aa~~l~~L~s~~~~--~~~~~~~~~~~~-------~~l~~~ 1868 (2100)
++..|+..-++-... ..+.|...|+..++.++..|-..|.+|..|.-+ +++++. ..+-+ .++...
T Consensus 984 algDlav~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e-MA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 984 ALGDLAVRFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE-MALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred eccchhhhcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH-HHHHhcCCcHHHHHHHHH
Confidence 999999544443322 244566677888888999999999999877754 666632 21111 111111
Q ss_pred ccccCCCCcHHHHHHHhhhhccCCCccccCCCccC--hHHHHHhhccC
Q 000133 1869 ELWATGTVNEEYLKALNALFNNFPRLRATEPATLS--IPHLVTALKTG 1914 (2100)
Q Consensus 1869 ~~~~~~~~~~~~c~~l~~~~~~~h~g~cs~~~tfc--i~~Lv~~L~~~ 1914 (2100)
-|--........-.=|=.|.+.+..| --++.+|| -+.|++.++..
T Consensus 1058 FF~Els~k~n~iynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1058 FFKELSSKGNTIYNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred HHHHhhhcccchhhhchHHHHhhccC-cccchhhHHHHHHHHHHhccc
Confidence 11001000011111124556666666 33677888 77888888765
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=9.1 Score=47.45 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCC--HHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhcc
Q 000133 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG--RGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1283 (2100)
Q Consensus 1206 ~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~--~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 1283 (2100)
|...+..++..+..+..+- ...+++..|..++..++ .|.++++- .+-.+++.|.+
T Consensus 284 ~~~~v~~~l~~~~g~e~a~---~~k~alsel~~m~~e~sfsvWeq~f~~--------------------iL~~l~EvL~d 340 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERAS---ERKEALSELPKMLCEGSFSVWEQHFAE--------------------ILLLLLEVLSD 340 (516)
T ss_pred hhHHHHHHHHhccCccchh---HHHHHHHHHHHHHHccchhHHHHHHHH--------------------HHHHHHHHHcc
Confidence 4445555555554432221 14578888888888774 46666662 24556678877
Q ss_pred -CChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc--CChhhHHHH-HHHHHHHhcCcchHHHHHhhcC
Q 000133 1284 -GLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN--CSMELKGDA-AELCGVLFGNTRIRSTVAAARC 1359 (2100)
Q Consensus 1284 -~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~--~~~~~~~~a-~~~L~~L~~~~~~r~~~~~~~~ 1359 (2100)
.++..++.|+..|..++.....+- ...+--++.+.|... +++++...| ..++..+++.. ...+
T Consensus 341 ~~~~~~k~laLrvL~~ml~~Q~~~l------~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-------P~~~ 407 (516)
T KOG2956|consen 341 SEDEIIKKLALRVLREMLTNQPARL------FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-------PLQC 407 (516)
T ss_pred chhhHHHHHHHHHHHHHHHhchHhh------hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-------chhH
Confidence 555566669999999996554442 122333344444332 234444444 45555554433 2335
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhccc---HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLVDD---EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
|..+..++...|+..-..++..+.+++.. +..-. .-.++.|.+++..++.+..||+.|+-||..+..-
T Consensus 408 I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~--ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 408 IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN--LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH--hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 55666667677777667777788888842 22211 2357889999999999999999999999887644
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=90.30 E-value=6.8 Score=42.20 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHhHccCC------HHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHH
Q 000133 179 AATVQAGGIDILVKLLTLGQ------SSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGA 251 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s~~------~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~a 251 (2100)
.+.+..||++.|++++.++. .+....+..++..|+.. +-..-...+...+...+..+.... |..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45778899999999999877 36778888888888764 334556677778888888888655 67899999999
Q ss_pred HHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH
Q 000133 252 LKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 304 (2100)
Q Consensus 252 L~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~ 304 (2100)
|.++...++..-..+.+.=-++.|+..|+.++ +.+|.++..-+-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~---------~~iq~naiaLin 127 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSN---------QEIQTNAIALIN 127 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC---------HHHHHHHHHHHH
Confidence 99999977666666767777899999998765 677777765443
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.22 E-value=5.4 Score=51.47 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=77.4
Q ss_pred chhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHH
Q 000133 1316 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELV 1395 (2100)
Q Consensus 1316 gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~ 1395 (2100)
|....|++-..+ ++..++-.+..++..+..+..-+.+..-.+....+...+.+..+.+|..|+-+|.++-+++..-
T Consensus 85 ~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 444455554444 5778999999999999886554455556667788888899999999999999999998422111
Q ss_pred HhcCCHHHHHHhhc-CCChhHHHHHHHHHH
Q 000133 1396 AAHGAVIPLVGLLY-GRNYMLHEAISRALV 1424 (2100)
Q Consensus 1396 ~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~ 1424 (2100)
+..++..+..+++ +++++||++|+..+.
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 2446778888887 899999999875543
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.58 Score=63.29 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCCceeeeeccchhhhhh--CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEE
Q 000133 1968 EKAEFLLQCLPGTLVVIIKRGNNMKQSV--GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045 (2100)
Q Consensus 1968 ~~a~~~le~i~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2045 (2100)
=....|++.- |-|++.+.-+.++.-.= |-+.-|+.|-+-+-.-+.|||++++.||.|+|+|+=-+. ....+-+.|-
T Consensus 1030 l~~~emv~ns-G~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~-~r~~D~~~i~ 1107 (1227)
T COG5038 1030 LPPVEMVENS-GYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVL-NRVKDVLTIN 1107 (1227)
T ss_pred cCcceeeccc-CcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeee-ccccceEEEE
Confidence 3556778877 99999999998886542 224578888886666999999999999999999987666 4677788888
Q ss_pred eecCCcc-CCcccceEEEEEeeEEeecccccceee
Q 000133 2046 CKNKSKM-GKSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2046 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
|++-+.- .++.+|.+.|.+.++--+|.|+-.--|
T Consensus 1108 v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l 1142 (1227)
T COG5038 1108 VNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL 1142 (1227)
T ss_pred EeecccCCCccccccccccHhhcCcCCccceeeec
Confidence 8885544 556679999999999989988766555
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.39 Score=36.40 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhcC
Q 000133 1401 VIPLVGLLYGRNYMLHEAISRALVKLGKD 1429 (2100)
Q Consensus 1401 i~~L~~lL~~~~~~vr~~A~~aL~~La~~ 1429 (2100)
+|.++++++|++++||..|+.+|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999764
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=89.43 E-value=18 Score=40.54 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC----CCcHHHHHHHhhcC
Q 000133 497 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD----TATISQLTALLTSD 572 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~----~~~i~~L~~lL~~~ 572 (2100)
++.+|.++..+++.|+..-+..- +..+|.+...|+++++.+|+.|..+|.+|...+- +..+..++.++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 47889999999999997533322 3467899999999999999999999999987552 22336777889999
Q ss_pred CcchHHHHHHHHHHHHhc
Q 000133 573 LPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 573 ~~~~~~~a~~aL~~l~~~ 590 (2100)
+++++..|..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999998877654
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.31 Score=62.03 Aligned_cols=82 Identities=22% Similarity=0.382 Sum_probs=60.8
Q ss_pred ceEEEecCCCCC----ccccccccCCCccccccceeccccC------------CCCCeE--EEEeec-CCcc-CCcccce
Q 000133 2000 VYCKLTLGNTPP----RQTKIVSTGPNPEWEESFAWSFEIP------------PKGQKL--HISCKN-KSKM-GKSSFGK 2059 (2100)
Q Consensus 2000 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~~-~~~~-~~~~~~~ 2059 (2100)
.|+..+.+ |+. ++||+.+++.+|+|+|-|.|....+ -.++|+ -+..|+ -+.+ ++.-+|.
T Consensus 153 p~~~v~~~-g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGe 231 (800)
T KOG2059|consen 153 PFARVTLC-GPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGE 231 (800)
T ss_pred cceEEeec-ccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhcee
Confidence 44544443 344 5999999999999999998877733 122454 455666 4444 4556699
Q ss_pred EEEEEeeEEeecccccceeecCC
Q 000133 2060 VTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2060 ~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
|.+..++......+.+-|.|.|+
T Consensus 232 vrv~v~~~~~~s~p~~W~~Lqp~ 254 (800)
T KOG2059|consen 232 VRVPVDVLRQKSSPAAWYYLQPR 254 (800)
T ss_pred EEeehhhhhhccCccceEEEecC
Confidence 99999999888899999999987
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=35 Score=42.97 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=85.5
Q ss_pred cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHH-hhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS-LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 410 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
.+++..++..|+++|.|.+...++....... ..+..++. +....+.+|+.++..+|.-+........-..+=-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 3567789999999999999886553322221 12333444 455567899999998888776321111111111224456
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHh--CCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 489 LVQILESGSAKAKEDSASILRNLCNHS-EDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 489 Lv~lL~~~~~~vre~A~~aL~~L~~~~-~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
+..++.+.+++.|..|...++.|+... ...+..+.+ .+...+|+-.+++.++.+- .||+.....|+
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 778889999999999888777776421 234444443 2223444555566555543 45555555554
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.78 E-value=6 Score=49.30 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=89.2
Q ss_pred hccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHH-HHHhhcC
Q 000133 1281 LNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS-TVAAARC 1359 (2100)
Q Consensus 1281 L~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~-~~~~~~~ 1359 (2100)
.++++...+..|+..|++.+.+.+.+..-. ..-.++.++.-|-+..+.++.-++...|..+.....+.. ...-...
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th---~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH---KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHh---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhH
Confidence 345666677779999999998866554331 345788888888777677888888887777654332211 1111223
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHhc---c---cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 000133 1360 VEPLVSLLVTEFSPAQHSVVRALDKLV---D---DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1427 (2100)
Q Consensus 1360 i~~Lv~lL~~~~~~~~~~A~~aL~~L~---~---~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La 1427 (2100)
.-.+..+..+.+++.|..|......|. + .+...+.+ . +-..+|+.-++++++.+-++.-..+....
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~-k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-K-KRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-H-hccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 346777888999999999877766666 2 22222222 1 22345666677888887665554444433
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=88.73 E-value=16 Score=45.07 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=149.0
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHh--cCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-----RESSIA--VKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~-----~~~~~~--~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
+...+.+..|+..|..-+-+.|+.++....++.+...+. .+.+.. ..++..|+..-..+ ++...+-..|+.
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccchHHHHHHH
Confidence 334566889999999999999999999999998764332 222322 23555555555543 455666666666
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHH---cCcHHHHHHHHccCChhHHH
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIA---EEIILPATRVLCEGTISGKT 749 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~ 749 (2100)
...+ ....+. +.....+..+.+.+..++-++...|..++..+... ++...+++. +..+.....++.+++--+++
T Consensus 150 c~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 150 CIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 5444 334454 67788888899999999999999999999998844 556666664 46667788888888877999
Q ss_pred HHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcC
Q 000133 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 750 ~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
++.+-|++++-...+...+..|+....-+.-++.+|++.+..+. .+|..++=-+..++
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq-~eAFhvFKvFVANp 285 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ-FEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH-HHHHHHHHHHHH-S
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh-HHHHHHHHHHHhCC
Confidence 99999999999999988889998889999999999999888888 89988887765444
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.1 Score=45.56 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=59.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 401 AKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 401 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
.++.|+.+|. +.++.+..-||.=|+.++...+.-+..+.+.|+-..++.++.+++++++.+|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4777889984 558888899999999999998888888878889999999999999999999999888764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=88.27 E-value=34 Score=45.98 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=140.3
Q ss_pred cCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhh-cCCChhHHHHHHHHHHHhhcCCchhhHHHH--hcCcHHH
Q 000133 1369 TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMV--KAGVIES 1445 (2100)
Q Consensus 1369 ~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~vr~~A~~aL~~La~~~~~~k~~i~--~~~~i~~ 1445 (2100)
++.|.-...|..++.+++........+. .-.....+..+ .+..+.+|-.|+.+++..++.. .+. ..+.++-
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-----vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK-----VLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCce-----eccccchHHHHH
Confidence 4556555677777777663210000010 11133334444 3777889999999998888442 121 2556777
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCccccccccc
Q 000133 1446 VLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTS 1525 (2100)
Q Consensus 1446 lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~ 1525 (2100)
+..+....++++.....++|................++.+.++.++..+.++|.+...+-.++..|++...|... ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~---m~ 611 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP---MQ 611 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc---hH
Confidence 777777777777777777765555544433334466677777888877777787777777777776653333322 23
Q ss_pred CCChHhhhhccCCCC----HHHHHHHHHHHHHhhcc--ccccccccccCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcC
Q 000133 1526 HQAIEPLIPLLDSPA----PAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVL-GSGIHILQQRAVKALVSIALT 1598 (2100)
Q Consensus 1526 ~~~l~~Lv~~L~~~~----~~vq~~a~~aL~~l~~~--~~~~~~l~~~g~i~~Lv~lL-~s~~~~vr~~Al~AL~~Ls~~ 1598 (2100)
.-.++.|++.|..+. ......++..|.-+... ++.-..+. +-+.+++.+.. .+++.+.-+.+-.||..+-..
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 346888999998665 67777788888866542 33333333 24567777755 678888888999999988776
Q ss_pred Chh
Q 000133 1599 WPN 1601 (2100)
Q Consensus 1599 ~~n 1601 (2100)
..-
T Consensus 691 ~~e 693 (1005)
T KOG2274|consen 691 TLE 693 (1005)
T ss_pred CHH
Confidence 544
|
|
| >PRK09169 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.9e+02 Score=43.81 Aligned_cols=229 Identities=20% Similarity=0.137 Sum_probs=108.0
Q ss_pred cccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHHHH-HHhhcCHH
Q 000133 1144 RKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLL-GILFSSAE 1222 (2100)
Q Consensus 1144 ~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll-~~l~~~~~ 1222 (2100)
...+..|.+.+.++++.. .+...+..|+..-......-.+.-.+..+++.++.=+....+......+ ..|..++.
T Consensus 122 ~~~~a~l~n~lsK~~d~~----aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~ 197 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRP----ACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSR 197 (2316)
T ss_pred HHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHH
Confidence 344456667777766644 2333333333311111112223456777888888765555555544444 34666676
Q ss_pred HHhhhcccCcHHHHHHHHhc-C-CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccC-ChhhHHHHHHHH-HH
Q 000133 1223 IRRHESAFAAVSQLVAVLRL-G-GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTG-LEREQHAAIAAL-VR 1298 (2100)
Q Consensus 1223 ~~~~~~~~~al~~Li~~L~~-~-~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~A~~aL-~~ 1298 (2100)
.... .+...+..++..|.. . +...+..+...-..|......+ .......+..++..|+.= ..+..+.|+.+| ..
T Consensus 198 l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~-~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~r 275 (2316)
T PRK09169 198 LLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLL-QSLRAQEVALLLNALSKWPDDEACRQAAEALAAR 275 (2316)
T ss_pred HHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH-HhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6644 345566666666642 2 3334444433333333322222 233456677777777542 223344444444 33
Q ss_pred hhcCCchhhHHHHhhhcchhHHHHHHHhhcCC-hhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHH
Q 000133 1299 LLSENPSRALAVADVEMNAVDVLCRILSSNCS-MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHS 1377 (2100)
Q Consensus 1299 La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~-~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~ 1377 (2100)
|+....-+..+ +...+...+.-|+.-++ +..+..+..+-..|...+..+..+...+.-+.|-.+-+-++.+.-..
T Consensus 276 la~~~~lr~~~----~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~ 351 (2316)
T PRK09169 276 LAREPGLRLAL----DPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRA 351 (2316)
T ss_pred HhcChhhhhhc----CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHH
Confidence 44332222211 33333333333433333 34444555555666666665545444444444444444444433333
Q ss_pred HHHHH
Q 000133 1378 VVRAL 1382 (2100)
Q Consensus 1378 A~~aL 1382 (2100)
|+.+|
T Consensus 352 Aa~~L 356 (2316)
T PRK09169 352 AAEAL 356 (2316)
T ss_pred HHHHH
Confidence 33333
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=87.94 E-value=32 Score=42.50 Aligned_cols=210 Identities=11% Similarity=0.121 Sum_probs=138.4
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+...+.+..|+..|..-+.+.++.++....++......+...+.+..+...-+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~p--------------------------- 124 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRP--------------------------- 124 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--T---------------------------
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCH---------------------------
Confidence 34567899999999999999999999999998775433222111222111111
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
..+..|+..-. ++++--.+...|....+. +.....+.....+..+.+....++-++...|..++..+.......
T Consensus 125 ---eil~~L~~gy~--~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~ 198 (335)
T PF08569_consen 125 ---EILDILLRGYE--NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKL 198 (335)
T ss_dssp ---HHHHHHHHGGG--STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHH
T ss_pred ---HHHHHHHHHhc--CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHH
Confidence 11333333322 444444566666666665 556666777778888999999999999999999999876654432
Q ss_pred HHHHHHhC---CChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHH---HHH-HcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 682 REVAAVAR---DALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE---KAI-AEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 682 ~~~~~~~~---~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~---~~v-~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
... +... .++.....++.+++==+|.++..-|+.|+.+..... .++ +.+-+..++.++++.+..++.+|-..
T Consensus 199 ~a~-fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv 277 (335)
T PF08569_consen 199 VAE-FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV 277 (335)
T ss_dssp HHH-HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 111 2222 356677789999999999999999999997765443 344 67889999999999999999999887
Q ss_pred HHHHHhcCccc
Q 000133 755 IARLLHSRKID 765 (2100)
Q Consensus 755 L~~l~~~~~~~ 765 (2100)
+--....+.-.
T Consensus 278 FKvFVANp~K~ 288 (335)
T PF08569_consen 278 FKVFVANPNKP 288 (335)
T ss_dssp HHHHHH-SS-B
T ss_pred HHHHHhCCCCC
Confidence 76555554444
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=87.67 E-value=19 Score=48.11 Aligned_cols=200 Identities=18% Similarity=0.123 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHH
Q 000133 65 SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV 144 (2100)
Q Consensus 65 ~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~ 144 (2100)
+..+.+|+.+.+++...|+-+.... .+.+.+..|..+....+.++--.-..+|..+..- |. ......++-+.|.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~---dp-ef~as~~skI~P~ 575 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL---DP-EFAASMESKICPL 575 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc---Ch-hhhhhhhcchhHH
Confidence 4566799999999999984333211 1224455666666666667666666777766652 11 1222334445555
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCC----HHHHHHHHHHHHHHhhcCcchh
Q 000133 145 LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ----SSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 145 L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~----~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
.+.+. ....+||++...+--++..++...+.+.. + ....+|.+++.|..++ +....-+..+|.......++..
T Consensus 576 ~i~lF-~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 576 TINLF-LKYSEDPQVASLAQDLFEELLQIAANYGP-M-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHH-HHhcCCchHHHHHHHHHHHHHHHHHhhcc-h-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 55544 44557788877777777777643222211 2 3357999999999876 5667778888877777777677
Q ss_pred hHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChH
Q 000133 221 SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIP 273 (2100)
Q Consensus 221 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~ 273 (2100)
....-.-+.|++.+..-++.|.++-..+-.+|+.+-....+.-..-...+|..
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 77777888999999988877778999999999998875544333333344443
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=21 Score=40.79 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=105.8
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc----CChhhHHHHHHHHHHHhcCcc--hHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN----CSMELKGDAAELCGVLFGNTR--IRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~----~~~~~~~~a~~~L~~L~~~~~--~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+++..+.|..+ +++.+--.|..+|... +.+-+|-.++.+++.|..+.+ +....-.++.+|..++
T Consensus 99 aL~LlQcvASHpdTr~~F---L~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAF---LRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHhcCcchHHHH---HHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 777777888899999888 5677777788887543 556788889999999988754 4445566889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHH-------HhcC-CHH-HHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELV-------AAHG-AVI-PLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~-------~~~g-~i~-~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.+..+++..+.-|..++.++..++..-+.+ ...+ .+. .+..+.+.++.++-+.++.+...++.+ |..+..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~a 254 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA 254 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999999999999999988544332222 1111 223 333555678999999999999999876 566655
Q ss_pred H
Q 000133 1437 M 1437 (2100)
Q Consensus 1437 i 1437 (2100)
+
T Consensus 255 L 255 (293)
T KOG3036|consen 255 L 255 (293)
T ss_pred H
Confidence 4
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=87.21 E-value=1 Score=34.18 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
+|.+++++.++++++|..|+.+|.+++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999853
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=86.82 E-value=3.8 Score=47.86 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~ 494 (2100)
....|.+.|..+|--++..+..+.+..++..|+++|. ...+.++..+..+|..+..+++.+...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4556789999999988888888989999999999995 457888988888888877789999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHHHhc
Q 000133 495 SG--SAKAKEDSASILRNLCN 513 (2100)
Q Consensus 495 ~~--~~~vre~A~~aL~~L~~ 513 (2100)
+. +.++|-.+...|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 67788877777665554
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=86.77 E-value=4 Score=52.92 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccch-hhH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRV 89 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~-~~~ 89 (2100)
+...-..+...+.+..+|+-|...+..+.+.-....+ .++..++.++.+++..+|.+|.+.|-.+|+++. .-.
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 3344444445556778888888888888877554433 478899999999999999999999999998754 334
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHH
Q 000133 90 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTG 165 (2100)
Q Consensus 90 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~ 165 (2100)
++ ...|+.+|.++++......-.+|..+-.. | ..+.+..++..+......+..+++.+..
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~---d--------~k~tL~~lf~~i~~~~~~de~~Re~~lk 155 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ---D--------PKGTLTGLFSQIESSKSGDEQVRERALK 155 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH---HS-HHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc---C--------cHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 44 56789999999888777777788777661 1 2345556666665322344445554433
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.6e+02 Score=41.36 Aligned_cols=215 Identities=13% Similarity=0.078 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHhhcchhhhhhhhh--cCChHHHHHhhccCChhhHHHHHHHHHHhhcC--CchhhHHHHhhhcchhH
Q 000133 1244 GRGARYSAAKALESLFSADHIRNAESA--RQAVQPLVEILNTGLEREQHAAIAALVRLLSE--NPSRALAVADVEMNAVD 1319 (2100)
Q Consensus 1244 ~~~~r~~Aa~aL~~L~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~--~~~~~~~~~~v~~gal~ 1319 (2100)
+...+..+=+.|..+...+.......+ ......|.+.+++.+...+..++.+|..|-.. ++....+. . .++
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~----k-~I~ 741 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP----K-LIP 741 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH----H-HHH
Confidence 456666776778887766333332222 23345566666666666666666555555432 23333331 1 233
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHH---hhcChHHHHHHHhcC----CchHHHHHHHHHHHhcc-cHHH
Q 000133 1320 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVA---AARCVEPLVSLLVTE----FSPAQHSVVRALDKLVD-DEQL 1391 (2100)
Q Consensus 1320 ~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~---~~~~i~~Lv~lL~~~----~~~~~~~A~~aL~~L~~-~~~~ 1391 (2100)
.++=.+.. .+...++.+..+|..+.. .......+ ....++..+..+.-+ ....+...+-++..+.. ....
T Consensus 742 EvIL~~Ke-~n~~aR~~Af~lL~~i~~-i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKE-VNVKARRNAFALLVFIGA-IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhccc-ccHHHHhhHHHHHHHHHH-HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 33323333 366777777777777662 00001111 122455555555443 33333332444444441 1112
Q ss_pred HHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHH
Q 000133 1392 AELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1465 (2100)
Q Consensus 1392 ~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL 1465 (2100)
-....-.+++..++.+|.+.++++++.|+..+..++..-|+....--....++.+..++.+..-.++..+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22223345678888889999999999999999999887655443333344677777776666555555555444
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.60 E-value=13 Score=49.32 Aligned_cols=186 Identities=15% Similarity=0.097 Sum_probs=119.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 135 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~ 135 (2100)
....+..+.++...+|-.+...|.++.++.+-...+...+.+...+..|++.|+-+-..|...+.-|+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce----------- 797 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE----------- 797 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-----------
Confidence 445666677788889999999999999765555556667889999999999999887777777777776
Q ss_pred hhccCChHHHHHH-hhccCCCcchHHHHHHHHHHHhccCCh----hhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 136 FSTEGVVPVLWEQ-LKNGLKSGNVVDNLLTGALRNLSTSTE----GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 136 ~~~~g~vp~L~~l-L~~~~~~~~~v~~~a~~aL~nL~~~~~----~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
+-.+.++|-|.+. ....+...+.-+-.+-.++.++...-. .++. -.+...++..++++...|..++..|+
T Consensus 798 vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 798 VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANLG 872 (982)
T ss_pred hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHH
Confidence 2345678888874 333332212211112233333332111 2222 23455666667777788999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~ 258 (2100)
.++....-.... .-..+..-++.+.+.+...-+|+.|+..+..+-.+
T Consensus 873 ~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 873 QLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 888432211111 12234555666666666678999999999988764
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=86.44 E-value=4.1 Score=44.48 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=89.5
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCch
Q 000133 572 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAGIFETRKDLRESSI-AVKTL 649 (2100)
Q Consensus 572 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~-~~g~v 649 (2100)
..+++|..+.-++..+.. ...+..+.. +...+. ++..++.+-...+..++..+....++....+. ..|.+
T Consensus 17 ~~~~~r~~a~v~l~k~l~--~~~~~~~~~------~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLD--AAREEFKEK------ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp TSCCHHHHHHHHHHHHHH--HHHHHHHHH------HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred CCHhHHHHHHHHHHHHHH--HhHHHHHHH------HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 556677777777666631 111111111 333333 44444455777899999999999888777665 56788
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHH-HHHHHHHHHHH
Q 000133 650 WSVMKLLD--VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLE-VAEQATCALAN 716 (2100)
Q Consensus 650 ~~Lv~lL~--~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~e-vr~~aa~aL~~ 716 (2100)
+.+..+.. ..+..++..++.+|..=|.. ..+..++...+++.|.++.+. +++. +|..|+-.|+.
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 88888888 77888888888888665433 334446777899999999964 4455 78888888764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=86.06 E-value=15 Score=45.02 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=107.6
Q ss_pred cHHHHH-HHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH---
Q 000133 527 AVPALL-WLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE--- 599 (2100)
Q Consensus 527 ~i~~Lv-~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--- 599 (2100)
.+..|+ ..+++.++.+++.|..+|+-.|--+.. ..++.+...+..++++++..+..++..+...-+....-..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 344444 566778899999999999988765543 3455666677777888999999999887765432211000
Q ss_pred --hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCC---CHHHHHHHHHHHHH
Q 000133 600 --GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVG---SECILVEASRCLAA 673 (2100)
Q Consensus 600 --~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~---~~~v~~~aa~aL~~ 673 (2100)
.......+..+.+++.+.++++|..|+.++++|.-.+. +.. ..++..|+.+.-++ +..-.+++....-.
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11223456778888999999999999999999887632 111 23444555444221 21234455444444
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCCCC
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGSPV 703 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~ 703 (2100)
...+....++. .+...+++.+..+.+.+.
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 43333333333 566778888888877644
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.9 Score=54.10 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHH
Q 000133 659 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 738 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ 738 (2100)
++...++-|++-|.....+.++.... ++..++.|..+.+..||.+|...|..++.+.+... ..++..|+.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v----~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV----SKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH----hHHHHHHHH
Confidence 46788999999999999988865554 78999999999999999999999999996643322 478889999
Q ss_pred HHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhh--cccccchHhHHHHHHHH
Q 000133 739 VLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES--ASGSVATSEALDALAIL 804 (2100)
Q Consensus 739 ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s--~~~~v~~~~al~~L~~L 804 (2100)
+|.+++.......-++|..++...+ .+++..+.+.+.+ +.++..++.++..|..-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~-----------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDP-----------KGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-H-----------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 9999998888888889999987655 4566677777663 22444558888877644
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.9 Score=43.93 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=62.2
Q ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 604 NDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 604 ~~~i~~Lv~lL-~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
...+..|+.+| .+.++.+...||.=|+.+++..|..+..+-+.|+=..+++++.+++++++.+|+.|+..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34588999999 55688888899999999999988888888888999999999999999999999999988754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=85.46 E-value=6.2 Score=48.28 Aligned_cols=164 Identities=18% Similarity=0.154 Sum_probs=105.2
Q ss_pred HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHH--
Q 000133 567 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DLRESS-- 643 (2100)
Q Consensus 567 ~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-~~~~~~-- 643 (2100)
..+++.++.+|..+.+|||-.+-..... . ...++.+...+..+++.++..|..++..+..... +..+..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~--a------~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKEL--A------KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHH--H------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4567788899999999999665554311 1 1237778888877899999999999998765422 221111
Q ss_pred -----HhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCC----HHHHHHHHHH
Q 000133 644 -----IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPV----LEVAEQATCA 713 (2100)
Q Consensus 644 -----~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~----~evr~~aa~a 713 (2100)
.....+..+...+.+.+++++..++..++.|..+.. +.. ...+..|+-+-.++. ..+|..-..-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 223577788888888899999999999999976542 122 345555555544432 3333332223
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccCC
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
+-..+......+..+....++.+..+.+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3333355555666666666676666665544
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=85.42 E-value=9.2 Score=44.79 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhc
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATI 280 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~ 280 (2100)
....|..+|.-++.-|++.+..+.....+..|+.+|...++..++..+..+|-.+--+++.+.+.+-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45667888888888899899999999999999999976666789999999998888889999999999999999999998
Q ss_pred CCC
Q 000133 281 APS 283 (2100)
Q Consensus 281 ~~~ 283 (2100)
+.+
T Consensus 187 ~~~ 189 (257)
T PF08045_consen 187 SKS 189 (257)
T ss_pred ccc
Confidence 764
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.09 E-value=0.35 Score=61.13 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=59.5
Q ss_pred EEecCCCCCccccccccCCCccccccceecccc-CCC--CCeEEEEeecCCccCCccc-ceEEEEEeeEEeecccccc
Q 000133 2003 KLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEI-PPK--GQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGE 2076 (2100)
Q Consensus 2003 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 2076 (2100)
++.+--.|.-+|||+++..||++||.|.|++.- |+. +-++|..|+||+-..-+-| |..-+.+-+|-..++|+|+
T Consensus 979 ~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpGva~~~~s 1056 (1103)
T KOG1328|consen 979 KFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPGVAATGGS 1056 (1103)
T ss_pred ccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCCCcccCCCc
Confidence 444556788899999999999999999998752 333 5599999999988766555 8888888888888888765
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.46 E-value=35 Score=39.05 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=95.1
Q ss_pred HHhCCCccchhhhccccHHHHHHhhc----C-CCHHHHHHHHHHHHHhhccCcc-chHHHHhCCcHHHHHHhhCCCCHHH
Q 000133 385 SLYGNPLLSIKLENSEAKRLLVGLIT----M-ATNEVQEELVRALLKLCNNEGS-LWRALQGREGIQLLISLLGLSSEQQ 458 (2100)
Q Consensus 385 ~L~~~~~~~~~l~~~g~i~~Lv~lL~----~-~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~v 458 (2100)
.+++.|+.+..+.++...-.+-..|. + +.+-.|..+...++.|..+++. ....+...+.||..++.++.+++.-
T Consensus 105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 34888999888777765555555554 2 3456788899999999887654 4455667889999999999999999
Q ss_pred HHHHHHHHHHhccCCcccHHHHHh----c----CChH-HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 459 QECSVALLCLLSNENDDSKWAITA----A----GGIP-PLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~~~i~~----~----g~i~-~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i 522 (2100)
+.-|..++..+-.+ +..-.-+.. - ..+. .+.++.+.+++..-.++..+..+|+. ++..|...
T Consensus 185 KtvA~fIlqKIlld-D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 185 KTVATFILQKILLD-DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred HHHHHHHHHHHhhc-cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 99999999988753 332111110 0 1122 23445567789999999999999987 47666554
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.66 E-value=1.7 Score=55.80 Aligned_cols=99 Identities=25% Similarity=0.391 Sum_probs=82.2
Q ss_pred CceeeeeccchhhhhhCC---CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcc
Q 000133 1980 TLVVIIKRGNNMKQSVGN---PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSS 2056 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2056 (2100)
.|-|.|--..|+--+ |. .--+|-+.+.+-+-=.|.+|-++..|-|-|+|. |+.|+-=+.|.++++|++ |+++.
T Consensus 6 sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~--~~iP~~F~~l~fYv~D~d-~~~D~ 81 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFY--FEIPRTFRYLSFYVWDRD-LKRDD 81 (800)
T ss_pred ceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceE--EecCcceeeEEEEEeccc-ccccc
Confidence 355666666666433 44 338999999888888899999999999999886 577999999999999999 98887
Q ss_pred c-ceEEEEEeeEEeecccccceeecCC
Q 000133 2057 F-GKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2057 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
. |||-|+=+++-+-.-..+-|+|.|-
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~V 108 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPV 108 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceecccc
Confidence 6 9999999999887778888999765
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=83.55 E-value=1e+02 Score=42.60 Aligned_cols=243 Identities=18% Similarity=0.116 Sum_probs=134.5
Q ss_pred CCchHHHHHHHhcCC-----HHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc----CCC----HHHHHHHHHHH
Q 000133 53 SQAVPVLVSLLRSGS-----LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK----SSS----AEGQIAAAKTI 119 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~-----~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----s~~----~~~~~~A~~aL 119 (2100)
-|++..++.++.+-. .+.-......|...|+-..+|..++..|+++.|++.|. .++ .+.-+.-...+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 577888888887532 24445567777778899999999999999999999995 323 33333333333
Q ss_pred HHHhccCCCCc-ccccchhccC--------ChHHHHHHhhccC-CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHH
Q 000133 120 YAVSQGGAKDY-VGSKIFSTEG--------VVPVLWEQLKNGL-KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDI 189 (2100)
Q Consensus 120 ~~Ls~~~~~~~-~~~~~~~~~g--------~vp~L~~lL~~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~ 189 (2100)
..+......+. .+...+.... -+..|++.+.+.. ...+.+....++.|-+|+..+++....+++. ..+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence 33332111111 1111111111 2666777776542 2234466778899999998887766655432 222
Q ss_pred HHHhHccC---CHHHHHHHHHHHHHHhhcC------cchhhHHhhhchHHHHHHHhcCCCC-------HH--------HH
Q 000133 190 LVKLLTLG---QSSTQAHVCFLLACMMEED------VSVCSRVLAADATKQLLKLLGSGNE-------AS--------VR 245 (2100)
Q Consensus 190 Lv~lL~s~---~~~v~~~a~~~L~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~--------v~ 245 (2100)
.+++=+-+ .++- .....++..++..- ..-+..+++.|.+...++.|....+ ++ ..
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 22211111 1111 12234444444222 1246777888999888887753221 11 23
Q ss_pred HHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHH
Q 000133 246 AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 304 (2100)
Q Consensus 246 ~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~ 304 (2100)
..+...|.-|+.++...+.. ...++| +++..|...+.+ ..-..+.|+.+.+|.
T Consensus 353 p~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LEqvss~----~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLEQVSSE----EHIGSLAENLLEALA 405 (802)
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhhcCCCc----cchHHHHHHHHHHHh
Confidence 44667888888877666555 455667 444445433211 122456666666665
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.53 E-value=45 Score=41.77 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 534 (2100)
.+-+..|..-|..+.+......+.=.-...+..+++.|++ .++..++.|...|..++...+. |-.=-.+-++..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHH
Confidence 3444555554555544444444443333466778888888 5888899999999999985332 1110113356666777
Q ss_pred hhcCChhHHHHHH-HHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH
Q 000133 535 LKNGSANGKEIAA-KTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI 613 (2100)
Q Consensus 535 L~~~~~~~~~~Aa-~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l 613 (2100)
-++..+.+...|. .++.-++.+.....|..+..++...+...-..++..+-.+....+.+++. ..+ .+..|.+++.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~-~ll--~diaP~~iqa 456 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELL-NLL--PDIAPCVIQA 456 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHH-Hhh--hhhhhHHHHH
Confidence 7777776655555 44555666655556666666665555554455555666555555544422 222 3458899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhc
Q 000133 614 LSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 614 L~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
..+.+..+|+.|..||-.+..
T Consensus 457 y~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hcCchHHhhhhHHHhHHHHHH
Confidence 999999999999999987764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.46 E-value=28 Score=46.05 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHhhccCccchHHHHhCC----cHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChH
Q 000133 413 TNEVQEELVRALLKLCNNEGSLWRALQGRE----GIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 487 (2100)
Q Consensus 413 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g----~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~ 487 (2100)
+++++..|+.+|.|+.+..+.+|...+..- +-+.. .+. .+.....++.. ...+.++...+||.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l----------~~mw~~Vr~ndGIk 742 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVL----------RQMWEAVRGNDGIK 742 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHH----------HHHHHHHhcCccHH
Confidence 789999999999999988777766554211 00100 111 11122222222 23455666678999
Q ss_pred HHHHhccCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 488 PLVQILESG-----SAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 488 ~Lv~lL~~~-----~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
.|++||+-. -..+|..|+.+|.-|+.+ +..|..+.+-..
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLpL 786 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCcc
Confidence 999999754 357899999999999985 777777665433
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=82.85 E-value=1.1e+02 Score=42.09 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=110.0
Q ss_pred HHhCCcHHHHHHhhCCC-----CHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc----CCC----HHHHHHH
Q 000133 438 LQGREGIQLLISLLGLS-----SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----SGS----AKAKEDS 504 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~s~-----~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~vre~A 504 (2100)
+.+.||+..|+.++.+- ...........|..++. .+.+++.+.+.|+++.|+..+. ..+ +++-+.-
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 33569999999988752 33444556666776764 7899999999999999998774 333 6677777
Q ss_pred HHHHHHHhcCChhhHHHH----HhCC--------cHHHHHHHhhcC----ChhHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 000133 505 ASILRNLCNHSEDIRACV----ESAD--------AVPALLWLLKNG----SANGKEIAAKTLNHLIHKSDTATISQLTAL 568 (2100)
Q Consensus 505 ~~aL~~L~~~~~~~~~~i----~~~g--------~i~~Lv~lL~~~----~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l 568 (2100)
..++..+........... .... -+..|++.+.+. ++.+.+..+++|-+|++..+ ..+..|+.-
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~-e~m~~Lv~~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE-EKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH-HHHHHHHHH
Confidence 777777764311111000 1111 256666666653 57788888999999998543 345555554
Q ss_pred hhc---------CCcchHHHHHHHHHHHHhccCch---hHHHHhhhccchHHHHHHHhcCCCHH
Q 000133 569 LTS---------DLPESKVYVLDALKSMLSVVSFS---DILREGSAANDAVETMIKILSSTKEE 620 (2100)
Q Consensus 569 L~~---------~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~i~~~~~i~~Lv~lL~s~~~~ 620 (2100)
.+. ....--..-+++++.++.-.+.+ +.++..+.+.|.+...+++|...-|.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 332 11111123466777766643322 24555666666677677766544433
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.54 E-value=45 Score=44.71 Aligned_cols=218 Identities=14% Similarity=0.102 Sum_probs=131.8
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH-hh
Q 000133 492 ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL-LT 570 (2100)
Q Consensus 492 lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l-L~ 570 (2100)
.+.++...+|.++...|..+...- +....+..++++...++.+++.++-+--.|...+..||..-+...+|.+.+- ..
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLS 813 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 344556677888888888888742 4455566788999999999998888877888877777766556677777663 22
Q ss_pred c---CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 000133 571 S---DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK 647 (2100)
Q Consensus 571 ~---~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g 647 (2100)
. ..++.+..+.+++..+...-+ ++..... +..+.......++++...|..++..++++|.-..-.... .-..
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~G--el~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~e 888 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALG--ELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHE 888 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhc--cHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHH
Confidence 1 113556667788877654322 1111111 112444555566777788999999999998642211011 1112
Q ss_pred chHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHH----HHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 000133 648 TLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVA----AVARDALSPLVVLAGSP-VLEVAEQATCALANL 717 (2100)
Q Consensus 648 ~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~----~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L 717 (2100)
++.-++.+. .+++.-+++.|+..+..+..+... +.. ....+....+.++.++. +..++..+..++..+
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~--dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE--DLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 344444444 466778999999999888766532 111 11234444555555543 333556666555544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.42 E-value=1.3e+02 Score=40.51 Aligned_cols=161 Identities=14% Similarity=0.196 Sum_probs=96.7
Q ss_pred HHHHhCCcHHHHHHhhCCC--------CHHHHHHHHHHHHHhccCCcccHHHHHhc--------CChHHHHHhccCC---
Q 000133 436 RALQGREGIQLLISLLGLS--------SEQQQECSVALLCLLSNENDDSKWAITAA--------GGIPPLVQILESG--- 496 (2100)
Q Consensus 436 ~~i~~~g~i~~Lv~lL~s~--------~~~v~~~A~~aL~nLs~~~~~~~~~i~~~--------g~i~~Lv~lL~~~--- 496 (2100)
+.+.+.+++..++.+...+ ..++...|..+|+-+.+ .|..+.++... .||..++..-...
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 3455667777777776532 34566678888888875 67777766532 3666655543322
Q ss_pred -CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc--CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCC
Q 000133 497 -SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDL 573 (2100)
Q Consensus 497 -~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~ 573 (2100)
+++++..|..+|-|+.+..|++|.... .-..+ ++++..- -.......+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i---------~~v~S~~g~~r~~l---------~~~~ks~~l----------- 724 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTI---------VAVGSQSGDRRIFL---------GAGTKSAKL----------- 724 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhh---------hhccccCCCccccc---------cCCCchHHH-----------
Confidence 799999999999999887667664431 11122 2222110 000000000
Q ss_pred cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 574 PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-----KEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-----~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
++ .|. .....+...+||..|+++|.-. -+.+|.-||.+|..|+++ +..++.+.
T Consensus 725 ----e~---~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIlt 782 (1516)
T KOG1832|consen 725 ----EQ---VLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILT 782 (1516)
T ss_pred ----HH---HHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHH
Confidence 01 011 1234567788999999998643 356888999999999997 45555443
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=82.36 E-value=21 Score=48.00 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=106.4
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 604 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 604 ~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
.+.+|.|++......-..+..-..+|.++-.+-|...-..-.....|.|++.|.-+|..++..+..++--+....+....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 45689999988766666677777888887765554333333445788899999988988888888888766543322221
Q ss_pred HHHHhCCChHHHHHHhCCCC---HHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 684 VAAVARDALSPLVVLAGSPV---LEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 684 ~~~~~~~~l~~Lv~ll~~~~---~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
. .-.-.+|.++.+-.+++ -.||+.|...|..|... |........++++.+|.+.|.+.-.-+|.+|+.+
T Consensus 946 ~--~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 E--HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred H--HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1 11345677777766655 45889999999998863 5555556678999999999988888899998865
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.14 E-value=40 Score=42.79 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=111.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhccCCCC
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA----EGQIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~~~~~A~~aL~~Ls~~~~~~ 129 (2100)
.....+..++.+++...|..+...|.+++.+..--..+....++..|.++..+++. +....+..|+..+-..+.
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce--
Confidence 34567889999999999999999999999888877788888889999999988765 445556666666655222
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
...+ .+....|-....+.+. ...+..+-..++..|-++....+.....+.+.--++.|+..++.++..++..|...+
T Consensus 161 -vsW~-~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 -VSWE-SVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred -eeee-ecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 1122 2223334444444422 233344555677888888877776777788889999999999999999998877777
Q ss_pred HHHhh
Q 000133 210 ACMME 214 (2100)
Q Consensus 210 ~~L~~ 214 (2100)
-.+..
T Consensus 238 nal~~ 242 (713)
T KOG2999|consen 238 NALFR 242 (713)
T ss_pred HHHHh
Confidence 55543
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=80.61 E-value=1.3e+02 Score=35.83 Aligned_cols=166 Identities=13% Similarity=0.178 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHhcCCh-------hhHHHHHhCCcHHHHHHHhhcCC----hhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000133 497 SAKAKEDSASILRNLCNHSE-------DIRACVESADAVPALLWLLKNGS----ANGKEIAAKTLNHLIHKSDTATISQL 565 (2100)
Q Consensus 497 ~~~vre~A~~aL~~L~~~~~-------~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~Aa~aL~~L~~~~~~~~i~~L 565 (2100)
+....+.+...|..|..... +.|-.+.=-+.+|.++.-+.+++ ......+|..|..+|.......+..+
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~i 154 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARI 154 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHH
Confidence 44556777888888876421 12333333445688888887776 23455777889889865444445554
Q ss_pred HHHh-hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 566 TALL-TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 566 ~~lL-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
+... +....+.......+...+.... .++ .....+-.|..+|.++.+.+|......|..+....+ .+. ..
T Consensus 155 l~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-~~~-~~ 225 (262)
T PF14225_consen 155 LSSYAKGRFRDKDDFLSQVVSYLREAF-FPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-MRS-PH 225 (262)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHh-Cch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc-CCC-Cc
Confidence 4443 3333333333333333332211 111 012336778889999999999999999999987643 322 24
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
.+..+.+|.++++++.- .+|...+-+.
T Consensus 226 ~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 226 GADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred chHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 55689999999987663 4555555444
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=80.31 E-value=29 Score=47.52 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhC-CcHHHHHHh-hCCCCHHHHHHHHHHHHHhccCCcccHHHHHh
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITA 482 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~l-L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~ 482 (2100)
+-.-+.+.+..-|..|+..+........ ....... +-+..++.. +.+.+..+...++.+|..++...... ..-+.
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 3344557788888899988888777644 1111111 223344443 44667777888888888887644433 34445
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--- 559 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--- 559 (2100)
.+..|.|+.-+.+....+++.+..++..++....- ....+.+...+++++|..+..+...+...-...++
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 56789999999999999998877777776652221 23568888999999999998887777655443321
Q ss_pred ------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhc
Q 000133 560 ------ATISQLTALLTSDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 560 ------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..+|.++....|.+.++|..+.++++.+..+
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 4567777778899999999999999866543
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=80.29 E-value=43 Score=42.12 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=60.5
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHHHH-HHhhccCccchHHHH
Q 000133 362 TLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRAL-LKLCNNEGSLWRALQ 439 (2100)
Q Consensus 362 ~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL-~~L~~~~~~~~~~i~ 439 (2100)
.+..=++++.+..+|+.++..|+.-..++..+..+...|..+.++..+.. ++..+...++-++ .-++.+ ......+.
T Consensus 25 ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~~~~l~~ 103 (361)
T PF07814_consen 25 YLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GLNMHLLL 103 (361)
T ss_pred HHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Ccchhhhh
Confidence 34444456666678999988888888899999999999999999999853 3332444443444 444444 33333444
Q ss_pred hCCcHHHHHHhhC
Q 000133 440 GREGIQLLISLLG 452 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~ 452 (2100)
+.+....++.+++
T Consensus 104 ~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 104 DRDSLRLLLKLLK 116 (361)
T ss_pred chhHHHHHHHHhc
Confidence 5556677788877
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=80.05 E-value=62 Score=40.75 Aligned_cols=93 Identities=22% Similarity=0.161 Sum_probs=57.5
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
+..+++-+.+. ....++..+.--|..-|. ++.+++.++++|.+..+.+.+.. ++..+...++.++..+...+....
T Consensus 23 v~ylld~l~~~--~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESS--SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcccC--CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 45566656522 223366556556666664 55888889999999999999954 444354444444444555444343
Q ss_pred hHHhhhchHHHHHHHhc
Q 000133 221 SRVLAADATKQLLKLLG 237 (2100)
Q Consensus 221 ~~i~~~g~i~~Lv~lL~ 237 (2100)
..+.+.+....+++++.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 44445666777788877
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 244 bits (623), Expect = 3e-67
Identities = 122/791 (15%), Positives = 250/791 (31%), Gaps = 55/791 (6%)
Query: 7 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG 66
T V Q ++ ++ + ++ + L+ L +E + + + + SL +
Sbjct: 4 TSTKVKQMMDLTFDLATPIDKRRAAANNLVVL--AKEQTGAELLYKDHCIAKVASLTKVE 61
Query: 67 S-LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAA-----KTIY 120
+ + ++ +LC+ + R K +L P + E ++ A +
Sbjct: 62 KDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILN 121
Query: 121 AVSQGGAKDYVGSKIFSTE-------GVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS 173
A+S K ++ L + + SG D ++ RN+ +
Sbjct: 122 ALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT 181
Query: 174 TEGFWAATVQAGGIDILVKLLTLGQ-----------SSTQAHVCFLLACMMEEDVSVCSR 222
+ V+ G+ L+ + + + S+ LA + E ++
Sbjct: 182 ALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK 241
Query: 223 VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAP 282
D + +K + + A+ +L + D ++ GI MI A
Sbjct: 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT 301
Query: 283 SKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342
E Q + L A + + + L + + L + L L
Sbjct: 302 DDELQQRVACECL--IAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGS 359
Query: 343 IYDSKAESTKPSD---PLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL-EN 398
A D + E KP ++ + LA L + KL E+
Sbjct: 360 YGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIED 419
Query: 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQ 458
+ L+ L +V + LCN + +E + +I L + +
Sbjct: 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAY-------EKQEMLPEMIELAKFAKQHI 472
Query: 459 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 518
E N+ + G L + ++ S ++E A +L +C +++
Sbjct: 473 PEEHELDDVDFINKR---ITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKEL 528
Query: 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD----------TATISQLTAL 568
R V V ALL + G+ GK A + L + + I L L
Sbjct: 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588
Query: 569 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628
L D + + ++L ++ ++ S ++ +R+ V + L +A
Sbjct: 589 LQQD--CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646
Query: 629 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688
L + + ++ + + L + E + LA I + E
Sbjct: 647 LCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706
Query: 689 RDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGK 748
L L L +P V + + N+I E K + E I+ L + +
Sbjct: 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766
Query: 749 TLAAAAIARLL 759
A + L
Sbjct: 767 AKAREVATQCL 777
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-37
Identities = 100/762 (13%), Positives = 238/762 (31%), Gaps = 89/762 (11%)
Query: 1272 QAVQPLVEILNTGLERE-QHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCS 1330
+ + + +++ + + L + R V + V R+L
Sbjct: 49 HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGV--LTELGVPWFMRVLDQKHE 106
Query: 1331 MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQ 1390
+ + + L T + +++ L + D
Sbjct: 107 -----NCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRT 161
Query: 1391 LAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEM--------VKAGV 1442
++ R+ ++ E I+R + + +E+ V + +
Sbjct: 162 ISG---------------AARDGVI-ELITRNVHYTALEWAERLVEIRGLCRLLDVCSEL 205
Query: 1443 IESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQH 1502
+ + + + + L + N + + ++ + +
Sbjct: 206 EDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKV 265
Query: 1503 SALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQK 1562
+ +L P + + ++ ++ + + Q++A E L ++ +
Sbjct: 266 RVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KA 324
Query: 1563 DPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE----IAKEGGVTELSKII-- 1616
+ +Q + L R+ S ++ RA+ L + + +G +L++
Sbjct: 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384
Query: 1617 LQADPSLPHALWESAASVLS--SILQFSSEFYLEVPVAV--LVRLLRSGSEGTVIGSLNA 1672
P + AA L+ ++ E +E ++ L+ L R G++ + G +
Sbjct: 385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444
Query: 1673 LL------------------------------VLESDDGTSA--EAMAESGAIEALLELL 1700
+ L+ D + +A G AL L
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504
Query: 1701 R--SHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALG 1758
+ SH +E AR+L + ++R + + L + L+ + ++ A +G
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 1759 DLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGG 1818
E ++ R L+N+L++ T ++ AL NL + S ++ + + G
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQG 624
Query: 1819 VQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYA--SSETVRAITAAIEKELWATGTV 1876
V + + + AA + L + + + +++ V+ + E E
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE---DEET 681
Query: 1877 NEEYLKALNALFNNFPRLRATEPATLSIPHLVTAL-KTGSEATQEAALDALFLLRQAWSA 1935
AL + + + A S ++ L S A Q + + +
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM------ 735
Query: 1936 CPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCL 1977
A A+ + D + LL L Q + E QCL
Sbjct: 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 2e-20
Identities = 87/658 (13%), Positives = 192/658 (29%), Gaps = 59/658 (8%)
Query: 220 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINAT 279
+ ++ L + + + +L ++ + + + G+P +
Sbjct: 42 AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVL 101
Query: 280 IAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALAS 339
+ + + + + N GL N S + ++ L L
Sbjct: 102 DQKHENCVST------AQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVY 155
Query: 340 ALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS 399
++ + S D +I L+ + ER +E L + S
Sbjct: 156 SI---TDRTISGAARDGVI---ELITRNVHYTALEWAERLVEI------RGLCRLLDVCS 203
Query: 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS--LLGLSSEQ 457
E + T L ++ N + + I I LL E
Sbjct: 204 ELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMES 263
Query: 458 QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517
+ +VA+ LL+ D + G + ++ + + + + L + +
Sbjct: 264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323
Query: 518 IRACVESADAVPALLWLLKNGSANGKEIAAKTL---------NHLIHKSDTATISQLTAL 568
+A E V L L + + + A L + I +L
Sbjct: 324 AKALCEQG--VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381
Query: 569 LTSDL------PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQ 622
L + + + D L + + L E ++ ++ + +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK---ASIHALMDLARGGNQSCL 438
Query: 623 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 682
+ + + +E + L K + R
Sbjct: 439 YGVVTTFVNL-CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVD----------FINKR 487
Query: 683 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE 742
+ L LA + E L + E+ K + E + R+ E
Sbjct: 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE 547
Query: 743 GTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALA 802
GT GK A A+AR+ + + + + + + L++ L+ ++ E+L AL
Sbjct: 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDV-IRPLLNLLQQDCTALENFESLMALT 606
Query: 803 ILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAV 860
L AS + +++ E + ++ I + + L A + L L + +
Sbjct: 607 NL-----ASMNESVRQRIIKE--QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 2e-13
Identities = 99/825 (12%), Positives = 221/825 (26%), Gaps = 61/825 (7%)
Query: 607 VETMIKILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDVGSECILV 665
V+ M+ + + A+A + ++ E + V L V + +
Sbjct: 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIY 67
Query: 666 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725
L A R + + + + IL++
Sbjct: 68 VNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCV-STAQFCLQTILNALSGL 126
Query: 726 KAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFL 785
K + LC + + R I D V L +
Sbjct: 127 KNKPDSKPDKE---LCTRNNREIDTLLTCLVYSITDRTISGAARDGV----IELITRNVH 179
Query: 786 ESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDK 845
+A + L L L + S D T
Sbjct: 180 YTALEWAERLVEIRGLCRL----------------LDVCSELEDYKYESAMDITGSSSTI 223
Query: 846 AIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQR 905
A L+R+ + I ++++ + + K+ +
Sbjct: 224 ASVCLARIYENMYYDEAKAR-FTDQIDEYIKDKLLA-PDMESKVRVTVAITALLNGPLDV 281
Query: 906 IVEDLNHSNSCAPLIQSLVTMLSVVE---ASPLRNQGNDDKEAISIYRYTSEEARNGGES 962
+ + ++ T + + L + +A ++ + + S
Sbjct: 282 GNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS 341
Query: 963 ESSTAVIFGENLAIWLLCVLACH-DEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKED 1021
++ + A+ LC L + + I GA L + L + D
Sbjct: 342 KNDGIRV----RALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK-PGKDKDIR 396
Query: 1022 SSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSR 1081
L + + ++ + +I L +L + + Y +L +
Sbjct: 397 RWAADGLAYLTLDAECKEKLIEDK--ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454
Query: 1082 GTLLSVANSGAAGGLISLLGCADADVQDLLD------------------LSEEFALVRYP 1123
+L A + + D D ++ E +
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514
Query: 1124 DQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKI 1183
L + ++++R + AL+ + ++ I + + +
Sbjct: 515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574
Query: 1184 VMVEAGALEALTKYLSLGP-QDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRL 1242
+ L L E+ L + + +R+ VS++ L
Sbjct: 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME 634
Query: 1243 GGRGARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLS 1301
+AA+ L +L + D I+ E V+ L + E A AL + S
Sbjct: 635 DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694
Query: 1302 ENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCV 1360
+ + + + +D+L ++++ S ++ + ++ I + +
Sbjct: 695 VSVKCCEKILAIA-SWLDILHTLIANP-SPAVQHRGIVIILNMINAGEEIAKKLFETDIM 752
Query: 1361 EPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLV 1405
E L L + A L E+ + + A IP V
Sbjct: 753 ELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDV 797
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 9e-11
Identities = 84/720 (11%), Positives = 203/720 (28%), Gaps = 79/720 (10%)
Query: 454 SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSA-SILRNLC 512
+ ++ + L +L+ E ++ + I + + + + + ++ LC
Sbjct: 20 TPIDKRRAAANNLVVLAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 513 NHSEDIRACVESADAVPALLWLLKNGS---ANGKEIAAKTLNHLIHKSDTATISQLTALL 569
+S + V + VP + +L + + +T+ + + S+ L
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 570 TSDLPESKVYVLDALKSMLSVVSFSDILREG-------------------SAANDAVETM 610
+ +L L ++ + S R+G + +
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198
Query: 611 IKILSSTKE-----------ETQAKSASALAGIFE-TRKDLRESSIAVKTLWSVMKLLDV 658
+ + S ++ + ++ LA I+E D ++ + + L
Sbjct: 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA 258
Query: 659 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718
V + + A+ + L ++ +A + A L
Sbjct: 259 PDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAAS 318
Query: 719 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTV 778
+ ++ A+ E+ + R+ + A + +L D I + A
Sbjct: 319 SKKDKAK-ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377
Query: 779 LA--LVSFLESASGSVATSE-ALDALAILSRSGGAS---GHVKPAWQVLAEFPKSITP-- 830
LA FL A D LA L+ K + L + +
Sbjct: 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSC 437
Query: 831 ----------IVSSIADATPLLQDKAIEILSRLCRDQPAVLGDE--------VTGASGCI 872
+ ++ L + + ++ + L D V G
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497
Query: 873 SSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEA 932
+++ + ++ ++ L + V + +
Sbjct: 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557
Query: 933 SPLRNQGNDDKEAISIYRYTSEEA----RNGGESESSTAVIFGENLAIWLLCVLACHDEK 988
L G +S S + N + + + F ++ L LA +E
Sbjct: 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF---ESLMALTNLASMNES 614
Query: 989 CKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMK 1048
+ I++ + + + M+ + L ++ + I
Sbjct: 615 VRQRIIKEQGVSKIEYYL---------MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+ LA L + E+ A A+A + + +A + L +L+ VQ
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 8e-54
Identities = 108/590 (18%), Positives = 188/590 (31%), Gaps = 100/590 (16%)
Query: 35 LLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLL- 93
++ LI+ +++A A A+P L LL V +AA ++ L K+ R ++
Sbjct: 2 VVNLINYQDDAELATR----AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 94 GGCIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 152
+ ++ +++++ E A T++ +S G G +P L + L +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS----HHREGLLAIFKSGGIPALVKMLGSP 113
Query: 153 LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 212
+ S V L NL EG A AGG+ +V LL A L +
Sbjct: 114 VDS---VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170
Query: 213 MEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGI 272
+ +LA+ + L+ ++ + + + LK LS C + I + G+
Sbjct: 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGM 229
Query: 273 PAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVAD 332
A+ PS+ L +N + L N+S + +
Sbjct: 230 QALGLHLTDPSQR---------LVQNCLWTLRNLSDAATKQE--------------GMEG 266
Query: 333 TLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPL 391
LG L L D V L++L N
Sbjct: 267 LLGTLVQLLGSDDIN---------------------------VVTCAAGILSNLTCNNYK 299
Query: 392 LSIKLENSEAKRLLVGLITMATN--EVQEELVRALLKLC---NNEGSLWRALQGREGIQL 446
+ + LV + A + ++ E + AL L A++ G+ +
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Query: 447 LISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK----- 501
++ LL S + L + + G IP LVQ+L +
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419
Query: 502 -----------------EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKE 544
E L L R + + +P + LL + N +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQR 478
Query: 545 IAAKTLNHLIHKSDTAT-------ISQLTALLTSDLPESKVYVLDALKSM 587
+AA L L + A + LT LL S Y L M
Sbjct: 479 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 9e-44
Identities = 88/519 (16%), Positives = 172/519 (33%), Gaps = 43/519 (8%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE-QQQECSV 463
L L+ V + + +L E S ++ + + ++ + +++ + C+
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81
Query: 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 523
L LS + + AI +GGIP LV++L S + + L NL H E + V
Sbjct: 82 GTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 140
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPE 575
A + ++ LL + I L L + + + L ++ + E
Sbjct: 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 200
Query: 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635
+L +L V+S + ++ + L+ + L + +
Sbjct: 201 K---LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 636 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPL 695
+ TL ++LL ++ A+ L+ + + +N+ + + L
Sbjct: 258 ATKQEGMEGLLGTL---VQLLGSDDINVVTCAAGILSNLTCNNYKNK-MMVCQVGGIEAL 313
Query: 696 V--VLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE----GTISGKT 749
V VL ++ E A CAL +L + +E A + V+ + +
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373
Query: 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV----ATSEALDALAILS 805
A + R L + + G + LV L A +
Sbjct: 374 KATVGLIRNL---ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
Query: 806 RSGGASGHVKPAWQVLAEFPKS---------ITPIVSSIADATPLLQDKAIEILSRLCRD 856
R A +LA + I V + +Q A +L L +D
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
Query: 857 QPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALL 895
+ A E A G + + ++ N V AA+L
Sbjct: 491 KEAA---EAIEAEGATAPLT-ELLHSRNEGVATYAAAVL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 102/591 (17%), Positives = 200/591 (33%), Gaps = 75/591 (12%)
Query: 1254 ALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADV 1313
A+ +L ++ +AE A +A+ L ++LN + + A + +L + SR +
Sbjct: 1 AVVNL--INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-- 56
Query: 1314 EMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSP 1373
V + R + + +E A L + + + + LV +L +
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 1374 AQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1432
+ L L + E V G + +V LL N + L L
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 1433 CKLEMVKAGVIESVLDIL--HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLL 1490
KL ++ +G +++++I+ + L + + +L++L+ + A ++ L L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTT-SRVLKVLSVCSSNKPAIVEAGGMQALGLH 235
Query: 1491 LTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAEL 1550
LT + L L N+ + + + L+ LL S V AA +
Sbjct: 236 LTDPS--QRLVQNCLWTLRNLSDAATKQEGME----GLLGTLVQLLGSDDINVVTCAAGI 289
Query: 1551 LSHLLLEEQLQKDPVTQ-QVIGPLIRVL--GSGIHILQQRAVKALVSIALTWPNEIAKEG 1607
LS+L K V Q I L+R + + + A+ AL +
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----- 344
Query: 1608 GVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVI 1667
E+++ ++ LP V+V+LL S +I
Sbjct: 345 ---EMAQNAVRLHYGLP----------------------------VVVKLLHPPSHWPLI 373
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKA 1727
+ L+ + + + E GAI L++LL
Sbjct: 374 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA--------------------HQDT 413
Query: 1728 TKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQP 1787
+ + +Q + ++ T AL L ++ ++ V +L P
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS-P 472
Query: 1788 TEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAA 1838
E ++ VA L L + A+ G + +L+ S + + AA
Sbjct: 473 IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-37
Identities = 96/578 (16%), Positives = 186/578 (32%), Gaps = 58/578 (10%)
Query: 1028 ALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSV 1087
A++ I +QD + +AIP L LL E+ AA V L + + +
Sbjct: 1 AVVNLINYQDDAELAT----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI-M 55
Query: 1088 ANSGAAGGLISLLG-CADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKA 1146
+ ++ + D + L L + +
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETA-------RCTAG------TLHNLSHHREGLLAIFKSGG 102
Query: 1147 IPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDAT 1206
IPALV +L P F A+ L L K+ + AG L+ + L+
Sbjct: 103 IPALVKMLG-SPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 160
Query: 1207 EEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIR 1265
L + + + E + A LV ++R ++ ++ L+ L +
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220
Query: 1266 NAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRIL 1325
A +Q L L +R + L R LS+ ++ + + L ++L
Sbjct: 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTL-RNLSDAATKQEGME----GLLGTLVQLL 275
Query: 1326 SSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSPAQHSVVRAL 1382
S+ + + AA L + N + + V +E LV ++ + + AL
Sbjct: 276 GSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 1383 DKLV----DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMV 1438
L + E V H + +V LL+ ++ + L++ P+ +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 394
Query: 1439 KAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGP 1498
+ G I ++ +L A + G+
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM---------------------E 433
Query: 1499 DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEE 1558
+ L + R + I + LL SP +Q++AA +L L ++
Sbjct: 434 EIVEGCTGALHILARDVHNRI--VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491
Query: 1559 QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1596
+ + + PL +L S + A L ++
Sbjct: 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-35
Identities = 99/545 (18%), Positives = 168/545 (30%), Gaps = 49/545 (8%)
Query: 1438 VKAGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1496
+ I + +L E + A + ++ A + ++V + + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN- 72
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
+ L N+ H + ++ I L+ +L SP +V A L +LLL
Sbjct: 73 DVETARCTAGTLHNLSHHREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 1557 EEQLQKDPVTQ-QVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGGVTEL 1612
++ K V + ++ +L L +A I GG L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNA 1672
I+ VLS + L L S+ V L
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 1673 LLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVL-LNNGKIRESKATK 1729
L L SD T E M G + L++LL S AA +L L NN K +
Sbjct: 251 LRNL-SDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 1730 SAILPLSQYLLD----PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEE 1785
I L + +L L L + E + +V +L
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-EAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 1786 QPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLF 1845
+ + ++NL + +N + E G + ++ L+ + +T + +M
Sbjct: 367 PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 1846 SNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIP 1905
++ E V T A+ + A N ++ LN IP
Sbjct: 426 F---VEGVRMEEIVEGCTGALH--ILARDVHNRIVIRGLNT-----------------IP 463
Query: 1906 HLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPR 1965
V L + E Q A L L A E A+++ A A L L+ S
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCEL-----AQDKEA--AEAIEAEGATAPLTELLHSRNEG 516
Query: 1966 FQEKA 1970
A
Sbjct: 517 VATYA 521
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-34
Identities = 94/587 (16%), Positives = 191/587 (32%), Gaps = 90/587 (15%)
Query: 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310
A+ +L ++ DA + IP + + + A + +S
Sbjct: 1 AVVNLINYQDDA---ELATRAIPELTKLLNDEDQV---------VVNKAAVMVHQLSKKE 48
Query: 311 SNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370
++ + + +++ +V +
Sbjct: 49 ASRH--------------AIMRSPQMVSA-----------------------IVRTMQNT 71
Query: 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN 430
T L +L + + + S LV ++ + V + L L +
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 431 EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490
+ A++ G+Q +++LL ++ + + L +L+ N +SK I A+GG LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 491 QILESGSAKAKEDSAS-ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKT 549
I+ + + + + S +L+ L S + A VE A + AL L + S + T
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 550 LNHLIHKSDTAT-----ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604
L +L + + L LL SD L ++ + +
Sbjct: 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL---TCNNYKNKMMVCQV 307
Query: 605 DAVETMIKIL--SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW---SVMKLLDVG 659
+E +++ + + +E+ + AL + ++ + AV+ + V+KLL
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367
Query: 660 SECILVEASRCLAAIFLSVRENR---------------------EVAAVARDALSPLVVL 698
S L++A+ L N + + +
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427
Query: 699 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758
G + E+ E T AL L D I ++L + + +AA + L
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487
Query: 759 LHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILS 805
++ + + G L L S + VAT A L +S
Sbjct: 488 AQDKE----AAEAIEAEGATAPLTELLHSRNEGVAT-YAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 99/619 (15%), Positives = 190/619 (30%), Gaps = 107/619 (17%)
Query: 469 LSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAV 528
L N DD A A IP L ++L +A ++ L A + S V
Sbjct: 5 LINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 529 PALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTAT-------ISQLTALLTSDLPESKVYV 580
A++ ++N + A TL++L H + I L +L S + Y
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121
Query: 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 640
+ L ++L + + ++ M+ +L+ T + A + L + ++ +
Sbjct: 122 ITTLHNLLL---HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 641 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG 700
+A +++ ++ + L+ + + + N+ A V + L +
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLT 237
Query: 701 SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARLL 759
P + + L NL S+ + K E +L ++L I+ T AA ++ L
Sbjct: 238 DPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 760 HSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQ 819
+ +Y V + G + ALV + A
Sbjct: 295 CN---NYKNKMMVCQVGGIEALVRTVLRAGDR---------------------------- 323
Query: 820 VLAEFPKSITPIVSSIADATPLLQDKAIEILSRLC-RDQPAVLGDEVTGASGCISSIARR 878
+ + AI L L R Q A + + + +
Sbjct: 324 --------------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363
Query: 879 VISCTNPKVKIGGAALL--ICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLR 936
+ ++ + L+ + NH + E I LV +L R
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLRE--------QGAIPRLVQLLVRAHQDTQR 415
Query: 937 NQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEA 996
+ + EE G L +LA +IVI
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEG---------------CTGALHILARDVH-NRIVIRGL 459
Query: 997 GAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANL 1056
+ + + ++ + A +L L QD++ A A L L
Sbjct: 460 NTIPLFVQLLYSP----------IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509
Query: 1057 LKSEESANRYFAAQAVASL 1075
L S +AA + +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-31
Identities = 91/481 (18%), Positives = 166/481 (34%), Gaps = 42/481 (8%)
Query: 1528 AIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQ-QVIGPLIRVLGSGIHILQQ 1586
AI L LL+ V AA ++ L +E + + Q++ ++R + + +
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 1587 R-AVKALVSIALTWPN--EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSS 1643
R L +++ I K GG+ L K++ S+ A + L ++L
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV----LFYAITTLHNLLLHQE 133
Query: 1644 EFYLEVP----VAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLEL 1699
+ V + +V LL + + + + L +L + S + SG +AL+ +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
Query: 1700 LRSHQCE---ETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLA 1756
+R++ E T +R+L+VL + + + L +L DP + Q L
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 1757 LGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEA 1816
L D + LV +L + A L NL + NK V +
Sbjct: 254 LSDAATKQEGME-----GLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 1817 GGVQVVLDLIGSSDPETSVQ--AAMFVKLLFSNHTIQEYASSETVRAITAAIEKELWATG 1874
GG++ ++ + + + A ++ L S H E A + + +L
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367
Query: 1875 TVNEEYLKALNALFNNFPRLRATEPATLS---IPHLVTALKTGSEATQEAALDALFLLRQ 1931
+ + +KA L N A IP LV L + TQ +
Sbjct: 368 S-HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426
Query: 1932 AWSACPAEVSKA---------------QSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 1976
E+ + + + IPL L+ S Q A +L
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486
Query: 1977 L 1977
L
Sbjct: 487 L 487
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-23
Identities = 88/549 (16%), Positives = 169/549 (30%), Gaps = 62/549 (11%)
Query: 590 VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA---LAGIFETRKDLRESSIAV 646
VV+ + + A A+ + K+L+ + K+A L+ +R + S V
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 647 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706
+ V + + + L LS +A + LV + GSPV V
Sbjct: 62 SAI--VRTMQNTNDVETARCTAGTLHN--LSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 707 AEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARLLHSRKID 765
A L NL+L E ++ A+ L +L + + + + L + +
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG---N 174
Query: 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFP 825
+ +G ALV+ + + + L +LS + E
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-------SSNKPAIVEA- 226
Query: 826 KSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNP 885
+ + + D + L + L L + G G + ++ + ++ +
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-----TKQEGMEGLLGTLVQ-LLGSDDI 280
Query: 886 KVKIGGAALL--ICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE--ASPLRN--QG 939
V A +L + ++ +V + + + + E LR+
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 940 NDDKEAISIYRYTSEEARNGG--------ESESSTAVIFGENLAIWLLCVLACHDEKCKI 991
+ + E + + G S +I A L
Sbjct: 341 HQEAEMA-----QNAVRLHYGLPVVVKLLHPPSHWPLI----KATVGLIRNLALCPANHA 391
Query: 992 VIMEAGAMDVLTD-----------RISDSLSQFTQMDYKEDSSI-WICALLLAILFQDRD 1039
+ E GA+ L R S +Q ++ I C L IL +D
Sbjct: 392 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 451
Query: 1040 IIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISL 1099
+ IP+ LL S + AA + L + + ++ GA L L
Sbjct: 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTEL 509
Query: 1100 LGCADADVQ 1108
L + V
Sbjct: 510 LHSRNEGVA 518
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 6e-20
Identities = 60/311 (19%), Positives = 101/311 (32%), Gaps = 42/311 (13%)
Query: 21 SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 80
+ S + + L L L D G + LV LL S + V AA +L +
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEG----LLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 81 LCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQI--AAAKTIYAVSQGGAKDYVGSKIFS 137
L N + ++ V G I L+ + + I A + ++ + +
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352
Query: 138 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG 197
+PV+ + L S + G +RNL+ + G I LV+LL
Sbjct: 353 LHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRA 409
Query: 198 QSSTQAHVCFLLACM-------MEEDVSVCSRVLA--------------ADATKQLLKLL 236
TQ MEE V C+ L + ++LL
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 469
Query: 237 GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQ 296
S E +++ AAG L L+ K+A I + + ++ +
Sbjct: 470 YSPIE-NIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEG---------VA 518
Query: 297 ENAMCALANIS 307
A L +S
Sbjct: 519 TYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-13
Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 26/301 (8%)
Query: 1685 EAMAESGAIEALLELLRSHQCE--ETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDP 1742
+A + AI L +LL AA ++ L R + ++ +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 1743 QTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNL 1802
+ AR L +L + + ALV +L P + + AI L NL
Sbjct: 71 TNDVETARC-TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNL 128
Query: 1803 VMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAI 1862
+++ K AV AGG+Q ++ L+ ++ + +++L Y + E+ I
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-------AYGNQESKLII 181
Query: 1863 TA--AIEK--ELWATGTVNEEYLKALNALFN--NFPRLRATEPATLSIPHLVTALKTGSE 1916
A + + T T + L + + L L S+
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241
Query: 1917 ATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 1976
+ L L L ++ + Q + L L+ S A +L
Sbjct: 242 RLVQNCLWTLRNL--------SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292
Query: 1977 L 1977
L
Sbjct: 293 L 293
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSL 68
S+ +Q + + E L L N +P+ V LL S
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR--GLNTIPLFVQLLYSPIE 474
Query: 69 AVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVS 123
++ AA VL L ++ E + G PL LL S + AA ++ +S
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 200 bits (509), Expect = 7e-53
Identities = 109/611 (17%), Positives = 194/611 (31%), Gaps = 98/611 (16%)
Query: 15 IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQA 74
+ ++VQ + L + N ++A+P L LL V +A
Sbjct: 111 TQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKA 170
Query: 75 ATVLGSLCKENELRVKVLL-GGCIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVG 132
A ++ L K+ R ++ + ++ +++++ E + T++ +S G
Sbjct: 171 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS----HHREG 226
Query: 133 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVK 192
G +P L L + + S V L NL EG A AGG+ +V
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDS---VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283
Query: 193 LLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGAL 252
LL A L + + +LA+ + L+ ++ + + + L
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343
Query: 253 KSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 312
K LS C + I + G+ A+ PS+ L +N + L N+S +
Sbjct: 344 KVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQR---------LVQNCLWTLRNLSDAATK 393
Query: 313 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP 372
+ LG L L D
Sbjct: 394 QE--------------GMEGLLGTLVQLLGSDDIN------------------------- 414
Query: 373 FLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATN--EVQEELVRALLKLC- 428
V L++L N + + LV + A + ++ E + AL L
Sbjct: 415 --VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472
Query: 429 --NNEGSLWRALQGREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSKWAITAAGG 485
+ A++ G+ +++ LL S + +V L+ L+ + + G
Sbjct: 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGA 531
Query: 486 IPPLVQILESGSAKAK----------------------EDSASILRNLCNHSEDIRACVE 523
IP LVQ+L + E L L R +
Sbjct: 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIR 590
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-------ISQLTALLTSDLPES 576
+ +P + LL + N + +AA L L + A + LT LL S
Sbjct: 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 650
Query: 577 KVYVLDALKSM 587
Y L M
Sbjct: 651 ATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 9e-53
Identities = 124/763 (16%), Positives = 218/763 (28%), Gaps = 100/763 (13%)
Query: 1089 NSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIP 1148
+ G +VQ L + S+ A+ L +D AT +AIP
Sbjct: 103 DEGMQIPSTQFDSAHPTNVQRLAEPSQMLKH-------AVVNLINYQDDAELAT--RAIP 153
Query: 1149 ALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEE 1208
L LL + A + QL+K S +M + A+ + + T
Sbjct: 154 ELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 1209 AATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESL-FSADHIRNA 1267
+ L L E + LV +L + A L +L + + A
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSS 1327
+Q +V +LN + L L N L + + L I+ +
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII--LASGGPQALVNIMRT 329
Query: 1328 NCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD 1387
+L + + VL + + + A ++ L L + + L L D
Sbjct: 330 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389
Query: 1388 DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVL 1447
+ G + LV LL + + + L L + K+ + + G IE+++
Sbjct: 390 AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447
Query: 1448 DILHEAPDFL------CSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQ 1501
+ A D A L + + + LL P
Sbjct: 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL-I 506
Query: 1502 HSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ 1561
+ + ++ N+ P A L AI L+ LL Q+ + + E ++
Sbjct: 507 KATVGLIRNLALCPANHA--PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 564
Query: 1562 KDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN--EIAKEGGVTELSKIILQA 1619
+ + + AL +A N I +
Sbjct: 565 MEEI-------------------VEACTGALHILARDIHNRIVIRGLNTI---------- 595
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
+ V+LL S E + L L D
Sbjct: 596 --------------------------------PLFVQLLYSPIENIQRVAAGVLCELAQD 623
Query: 1680 DGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRESKATKSAILPLSQ 1737
+AEA+ GA L ELL S AA +L + + + K + L+
Sbjct: 624 KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED---KPQDYKKRLSVELTS 679
Query: 1738 YLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1797
L + L +G + G + + + + + + M +
Sbjct: 680 SLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMA 739
Query: 1798 ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMF 1840
Y + DLI P S Q A F
Sbjct: 740 GHHPGPDYPVDGLPDLGHTQ------DLIDGLPPGDSNQLAWF 776
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-52
Identities = 100/563 (17%), Positives = 187/563 (33%), Gaps = 80/563 (14%)
Query: 17 QLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAAT 76
+ Q+++ V+ + L L RE + S +P LV++L S +V A T
Sbjct: 199 RTMQNTNDVETARCTSGTLHNLSHHREGLLAIF--KSGGIPALVNMLGSPVDSVLFHAIT 256
Query: 77 VLGSLCKENE-LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA--KDYVGS 133
L +L E ++ V L G + ++ LL ++ + + ++ G K + +
Sbjct: 257 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 316
Query: 134 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKL 193
G L ++ + + + L+ LS + A V+AGG+ L
Sbjct: 317 -----SGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLH 368
Query: 194 LTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALK 253
LT + + L + + + L++LLGS + +V AAG L
Sbjct: 369 LTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILS 424
Query: 254 SLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV 313
+L+ + + + GI A++ + + + E A+CAL +++ +
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQD- 476
Query: 314 ISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPF 373
L +V P +
Sbjct: 477 ----------AEMAQNAVRLHYGL-----------------------PVVVKLLHPPSHW 503
Query: 374 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS 433
+ + T+ + +L P L A LV L+ A + Q
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT-------- 555
Query: 434 LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 493
+ G+ E+ E L +L+ + ++ I IP VQ+L
Sbjct: 556 ------------QQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLL 602
Query: 494 ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553
S + +A +L L E +E+ A L LL + + AA L +
Sbjct: 603 YSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661
Query: 554 IHKSDTATISQLTALLTSDLPES 576
+L+ LTS L +
Sbjct: 662 SEDKPQDYKKRLSVELTSSLFRT 684
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-47
Identities = 112/662 (16%), Positives = 221/662 (33%), Gaps = 79/662 (11%)
Query: 1251 AAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1310
A+ +L ++ +AE A +A+ L ++LN + + A + +L + SR +
Sbjct: 131 LKHAVVNL--INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188
Query: 1311 ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTE 1370
V + R + + +E + L + + + + LV++L +
Sbjct: 189 --RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP 246
Query: 1371 FSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1429
+ L L + E V G + +V LL N + L L
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306
Query: 1430 RPSCKLEMVKAGVIESVLDIL--HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPL 1487
KL ++ +G +++++I+ + L + + +L++L+ + A ++ L
Sbjct: 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTT-SRVLKVLSVCSSNKPAIVEAGGMQAL 365
Query: 1488 FLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLA 1547
L LT + L L N+ + + + L+ LL S V A
Sbjct: 366 GLHLTDPS--QRLVQNCLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCA 419
Query: 1548 AELLSHLLLEEQLQKDPVTQQ-VIGPLIRVL--GSGIHILQQRAVKALVSIALTWPNEIA 1604
A +LS+L K V Q I L+R + + + A+ AL + +
Sbjct: 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA-- 477
Query: 1605 KEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEG 1664
E+++ ++ LP V+V+LL S
Sbjct: 478 ------EMAQNAVRLHYGLP----------------------------VVVKLLHPPSHW 503
Query: 1665 TVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRE 1724
+I + L+ + + + E GAI L++LL + +
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA---------------HQDTQR 548
Query: 1725 SKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLE 1784
+ + + + L LA N + R + + V +L
Sbjct: 549 RTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNRIVIRGLNTI---PLFVQLLY 603
Query: 1785 EQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLL 1844
P E ++ VA L L + A+ G + +L+ S + + AA + +
Sbjct: 604 S-PIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661
Query: 1845 FSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSI 1904
S Q+Y +V ++ E T NE L+ P + +
Sbjct: 662 -SEDKPQDYKKRLSVELTSSLFRTE---PMTWNETGDLGLDIGAQGEPLGYRQDDPSYRS 717
Query: 1905 PH 1906
H
Sbjct: 718 FH 719
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-37
Identities = 100/603 (16%), Positives = 194/603 (32%), Gaps = 55/603 (9%)
Query: 1028 ALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSV 1087
L A++ A +AIP L LL E+ AA V L + + +
Sbjct: 130 MLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI-M 188
Query: 1088 ANSGAAGGLISLLG-CADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKA 1146
+ ++ + D + L L + +
Sbjct: 189 RSPQMVSAIVRTMQNTNDVETA-------RCTS------GTLHNLSHHREGLLAIFKSGG 235
Query: 1147 IPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDAT 1206
IPALV++L F A+ L L K+ + AG L+ + L+
Sbjct: 236 IPALVNMLG--SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293
Query: 1207 EEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIR 1265
L + + + E + A LV ++R ++ ++ L+ L +
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353
Query: 1266 NAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRIL 1325
A +Q L L +R + L R LS+ ++ + + L ++L
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTL-RNLSDAATKQEGME----GLLGTLVQLL 408
Query: 1326 SSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSPAQHSVVRAL 1382
S + + AA L + N + + V +E LV ++ + + AL
Sbjct: 409 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 1383 DKLV----DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMV 1438
L D E V H + +V LL+ ++ + L++ P+ +
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 527
Query: 1439 KAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGP 1498
+ G I ++ +L A + G+
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM---------------------E 566
Query: 1499 DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEE 1558
+ + L + R + I + LL SP +Q++AA +L L ++
Sbjct: 567 EIVEACTGALHILARDIHNRI--VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 624
Query: 1559 QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ 1618
+ + + PL +L S + A L ++ P + K+ EL+ + +
Sbjct: 625 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY-KKRLSVELTSSLFR 683
Query: 1619 ADP 1621
+P
Sbjct: 684 TEP 686
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 7e-37
Identities = 103/618 (16%), Positives = 182/618 (29%), Gaps = 60/618 (9%)
Query: 1374 AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSC 1433
AQ + +D+ A V L + ML A+ +
Sbjct: 90 AQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDD----- 144
Query: 1434 KLEMVKAGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492
+ I + +L E + A + ++ A + ++V + +
Sbjct: 145 --AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 202
Query: 1493 RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1552
+ + L N+ H + ++ I L+ +L SP +V A L
Sbjct: 203 NTN-DVETARCTSGTLHNLSHHREGLL--AIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259
Query: 1553 HLLLEEQLQKDPVTQ-QVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGG 1608
+LLL ++ K V + ++ +L L +A I GG
Sbjct: 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 319
Query: 1609 VTELSKIILQADPS--LPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTV 1666
L I+ L VLS + L L S+ V
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSR--VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 1667 IGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVL-LNNGKIR 1723
L L L + + G + L++LL S AA +L L NN K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434
Query: 1724 ESKATKSAILPLSQYLL----DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRAL 1779
I L + +L L L E + +
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-DAEMAQNAVRLHYGLPVV 493
Query: 1780 VNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAM 1839
V +L + + ++NL + +N + E G + ++ L+ + +T + +M
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552
Query: 1840 FVKLLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEP 1899
++ E V A T A+ + A N ++ LN
Sbjct: 553 GGTQQ---QFVEGVRMEEIVEACTGALH--ILARDIHNRIVIRGLNT------------- 594
Query: 1900 ATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLI 1959
IP V L + E Q A L + A+++ A A L L+
Sbjct: 595 ----IPLFVQLLYSPIENIQRVAAGVL-------CELAQDKEAAEAIEAEGATAPLTELL 643
Query: 1960 QSGPPRFQEKAEFLLQCL 1977
S A +L +
Sbjct: 644 HSRNEGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 9e-37
Identities = 94/626 (15%), Positives = 193/626 (30%), Gaps = 95/626 (15%)
Query: 246 AEAAGALKSLSDH-CKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 304
AE + LK + + IP + + + A +
Sbjct: 125 AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQV---------VVNKAAVMVH 175
Query: 305 NISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLV 364
+S ++ + + +++ +V
Sbjct: 176 QLSKKEASRH--------------AIMRSPQMVSA-----------------------IV 198
Query: 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRAL 424
+ T L +L + + + S LV ++ + V + L
Sbjct: 199 RTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258
Query: 425 LKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG 484
L ++ A++ G+Q +++LL ++ + + L +L+ N +SK I A+G
Sbjct: 259 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 318
Query: 485 GIPPLVQILESGSAKAKEDSAS-ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGK 543
G LV I+ + + + + S +L+ L S + A VE A + AL L + S
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 377
Query: 544 EIAAKTLNHLIHKSDTAT-----ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILR 598
+ TL +L + + L LL SD L ++ + +
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL---TCNNYKNK 434
Query: 599 EGSAANDAVETMIKIL--SSTKEETQAKSASALAGI---FETRKDLRESSIAVKTLWSVM 653
+E +++ + + +E+ + AL + + + + + L V+
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494
Query: 654 KLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713
KLL S L++A+ L N + A+ LV L + + +
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHA-PLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 714 LANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVN 773
V + I E A+ L I
Sbjct: 554 GTQQQFVEGVRMEEIVEA-------------------CTGALHILARDIHNRIVIRG--- 591
Query: 774 RAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 833
T+ V L S ++ A L L++ A+ ++ + P+
Sbjct: 592 -LNTIPLFVQLLYSPIENIQ-RVAAGVLCELAQDKEAAEAIEAE--------GATAPLTE 641
Query: 834 SIADATPLLQDKAIEILSRLCRDQPA 859
+ + A +L R+ D+P
Sbjct: 642 LLHSRNEGVATYAAAVLFRMSEDKPQ 667
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 1e-34
Identities = 103/608 (16%), Positives = 198/608 (32%), Gaps = 71/608 (11%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
A ++ L+ + ++ + + + ++ + + + L L
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---------NDVETARCTSGTLHNL 220
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
R+ + A IP L N+L S + + A + +L G ++V +G
Sbjct: 221 SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQ 279
Query: 1095 GLISLLGCADADVQDLLDLSEEFALVRYPDQVALERL-FRVEDIRVGATSRKAIPALVDL 1153
+++LL + L+ L + ++ ++ + ALV++
Sbjct: 280 KMVALLNKTNVKFL-------AITT------DCLQILAYGNQESKLIILASGGPQALVNI 326
Query: 1154 LKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
++ + L L+ C SNK +VEAG ++AL +L+ Q + L
Sbjct: 327 MRT-YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
Query: 1214 LGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQA 1273
+ S + E + LV +L AA L +L + ++ +N Q
Sbjct: 385 RNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQV 440
Query: 1274 --VQPLVEILNTGLERE--QHAAIAALVRLLSENPSRALA-VADVEMNAVDVLCRILSSN 1328
++ LV + +RE AI AL L S + +A A + V+ ++L
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500
Query: 1329 CSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQ------------- 1375
L L L + + + LV LLV Q
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560
Query: 1376 ---------HSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKL 1426
+ AL L D ++ + V LLY + + L +L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620
Query: 1427 GKDRPSCKLEMVKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVE 1485
+D + G + ++LH A A L R+ + K ++
Sbjct: 621 AQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK----KRLSV 675
Query: 1486 PLFLLLTRSEFGPDGQHSAL--------QVLVNILEHPQCRADYSLTSHQAIEPLIPLLD 1537
L L R+E + L + L + P R+ +S Q + P+++
Sbjct: 676 ELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMME 735
Query: 1538 SPAPAVQQ 1545
Sbjct: 736 HEMAGHHP 743
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-26
Identities = 61/415 (14%), Positives = 123/415 (29%), Gaps = 44/415 (10%)
Query: 53 SQAVPVLVSLLRSGSLA-VKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEG 111
S LV+++R+ + + + VL L + + ++ G + L L S
Sbjct: 317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 376
Query: 112 QIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS 171
T+ +S +K EG++ L + L + NVV G L NL+
Sbjct: 377 VQNCLWTLRNLSDAA------TKQEGMEGLLGTLVQLLGSD--DINVVTCA-AGILSNLT 427
Query: 172 TSTEGFWAATVQAGGIDILVKLLTLGQSS--TQAHVCFLLACM---MEEDVSVCSRVLAA 226
+ Q GGI+ LV+ + L + ++ + V
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487
Query: 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEF 286
++KLL + + G +++L+ C + IP ++ + ++
Sbjct: 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD- 545
Query: 287 MQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346
Q +E V GAL +
Sbjct: 546 --------TQRRTSMGGTQQQ------------FVEGVRMEEIVEACTGALHILARDIHN 585
Query: 347 KAESTKPSD-PLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLL 405
+ + PL V+ +Q L L + + +E A L
Sbjct: 586 RIVIRGLNTIPLFVQLLYSPIEN------IQRVAAGVLCELAQDKEAAEAIEAEGATAPL 639
Query: 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQE 460
L+ V L ++ ++ ++ E L ++ + +
Sbjct: 640 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGD 694
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Query: 9 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSL 68
S+ +Q + + E L L N G + +P+ V LL S
Sbjct: 550 TSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN--TIPLFVQLLYSPIE 607
Query: 69 AVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAK 128
++ AA VL L ++ E + G PL LL S + AA ++ +S+ +
Sbjct: 608 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667
Query: 129 DY 130
DY
Sbjct: 668 DY 669
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 2e-52
Identities = 99/557 (17%), Positives = 193/557 (34%), Gaps = 65/557 (11%)
Query: 17 QLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAAT 76
+ Q+++ V+ + L L RE + S +P LV +L S +V A T
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIF--KSGGIPALVKMLGSPVDSVLFYAIT 120
Query: 77 VLGSLCKENE-LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA--KDYVGS 133
L +L E ++ V L G + ++ LL ++ + + ++ G K + +
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 134 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKL 193
G L ++ + + + L+ LS + A V+AGG+ L
Sbjct: 181 -----SGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLH 232
Query: 194 LTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALK 253
LT + + L + + + L++LLGS + +V AAG L
Sbjct: 233 LTDPSQRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDI-NVVTCAAGILS 288
Query: 254 SLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG---- 309
+L+ + + + GI A++ + + + E A+CAL +++
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR-------EDITEPAICALRHLTSRHQEA 341
Query: 310 --------LSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQ 361
L + + + L S + T+G + + + + A
Sbjct: 342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP------------ 389
Query: 362 TLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 421
L ++ I L L + S + + E+ E
Sbjct: 390 ------------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT 437
Query: 422 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481
AL L + + ++G I L + LL E Q + +LC L+ ++ ++ AI
Sbjct: 438 GALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIE 495
Query: 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN 541
A G PL ++L S + +A++L + S + +L +
Sbjct: 496 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF---RTEPMA 552
Query: 542 GKEIAAKTLNHLIHKSD 558
E A L+
Sbjct: 553 WNETADLGLDIGAQGEP 569
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-52
Identities = 116/630 (18%), Positives = 201/630 (31%), Gaps = 108/630 (17%)
Query: 38 LIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLL-GGC 96
LI+ +++A A A+P L LL V +AA ++ L K+ R ++
Sbjct: 2 LINYQDDAELATR----AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57
Query: 97 IPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS 155
+ ++ +++++ E A T++ +S G G +P L + L + + S
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLS----HHREGLLAIFKSGGIPALVKMLGSPVDS 113
Query: 156 GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEE 215
V L NL EG A AGG+ +V LL A L +
Sbjct: 114 ---VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 216 DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAM 275
+ +LA+ + L+ ++ + + + LK LS C + I + G+ A+
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQAL 229
Query: 276 INATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLG 335
PS+ L +N + L N+S + G LG
Sbjct: 230 GLHLTDPSQR---------LVQNCLWTLRNLSDAATKQEGMEG--------------LLG 266
Query: 336 ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSI 394
L L D V L++L N +
Sbjct: 267 TLVQLLGSDDIN---------------------------VVTCAAGILSNLTCNNYKNKM 299
Query: 395 KLENSEAKRLLVGLITMATN--EVQEELVRALLKLC---NNEGSLWRALQGREGIQLLIS 449
+ LV + A + ++ E + AL L A++ G+ +++
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 450 LLGLSS-EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK------- 501
LL S + +V L+ L+ + + G IP LVQ+L +
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418
Query: 502 ---------------EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIA 546
E L L R + + +P + LL + N + +A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477
Query: 547 AKTLNHLIHKSDTAT-------ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599
A L L + A + LT LL S Y L +S D +
Sbjct: 478 AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR-MSEDKPQDYKKR 536
Query: 600 GSAANDAVETMIKILSSTKEETQAKSASAL 629
S VE + + + L
Sbjct: 537 LS-----VELTSSLFRTEPMAWNETADLGL 561
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 5e-49
Identities = 106/654 (16%), Positives = 213/654 (32%), Gaps = 81/654 (12%)
Query: 1261 ADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDV 1320
++ +AE A +A+ L ++LN + + A + +L + SR + V
Sbjct: 3 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR--SPQMVSA 60
Query: 1321 LCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVR 1380
+ R + + +E A L + + + + LV +L + +
Sbjct: 61 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 120
Query: 1381 ALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
L L + E V G + +V LL N + L L KL ++
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 1440 AGVIESVLDIL--HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFG 1497
+G +++++I+ + L + + +L++L+ + A ++ L L LT
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTT-SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-- 237
Query: 1498 PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE 1557
+ L L N+ + + + L+ LL S V AA +LS+L
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293
Query: 1558 EQLQKDPVTQ-QVIGPLIRVL--GSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSK 1614
K V Q I L+R + + + A+ AL + E+++
Sbjct: 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--------EMAQ 345
Query: 1615 IILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALL 1674
++ LP +V+LL S +I + L+
Sbjct: 346 NAVRLHYGLPV----------------------------VVKLLHPPSHWPLIKATVGLI 377
Query: 1675 VLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILP 1734
+ + + E GAI L++LL + + +
Sbjct: 378 RNLALCPANHAPLREQGAIPRLVQLLVRA---------------HQDTQRRTSMGGTQQQ 422
Query: 1735 LSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVV 1794
+ + + L LA N + R + + V +L P E ++ V
Sbjct: 423 FVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTI---PLFVQLLYS-PIENIQRV 476
Query: 1795 AICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYA 1854
A L L + A+ G + +L+ S + + AA + + +
Sbjct: 477 AAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK------ 529
Query: 1855 SSETVRAITAAIEKELWATGT--VNEEYLKALNALFNNFPRLRATEPATLSIPH 1906
+ + ++ + L+ T NE L+ P + + H
Sbjct: 530 PQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFH 583
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 2e-44
Identities = 93/553 (16%), Positives = 183/553 (33%), Gaps = 48/553 (8%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE-QQQECSV 463
L L+ V + + +L E S ++ + + ++ + +++ + C+
Sbjct: 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78
Query: 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 523
L LS + + AI +GGIP LV++L S + + L NL H E + V
Sbjct: 79 GTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPE 575
A + ++ LL + I L L + + + L ++ + E
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197
Query: 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635
+L +L V+S + ++ + L+ + L + +
Sbjct: 198 K---LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 636 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPL 695
+ TL ++LL ++ A+ L+ + + +N+ + L
Sbjct: 255 ATKQEGMEGLLGTL---VQLLGSDDINVVTCAAGILSNLTCNNYKNKM-MVCQVGGIEAL 310
Query: 696 VVL--AGSPVLEVAEQATCALANLILDSEVSEK---AIAEEIILPA-TRVLCEGTISGKT 749
V ++ E A CAL +L + +E A+ LP ++L +
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370
Query: 750 LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 809
A + R L + + G + LV L A ++ G
Sbjct: 371 KATVGLIRNL---ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427
Query: 810 ASGHVKP----AWQVLAEFPKS---------ITPIVSSIADATPLLQDKAIEILSRLCRD 856
+ A +LA + I V + +Q A +L L +D
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Query: 857 QPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSC 916
+ A E A G + + ++ N V AA+L ++ Q + L+
Sbjct: 488 KEAA---EAIEAEGATAPLT-ELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS----- 538
Query: 917 APLIQSLVTMLSV 929
L SL +
Sbjct: 539 VELTSSLFRTEPM 551
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 6e-41
Identities = 98/567 (17%), Positives = 174/567 (30%), Gaps = 43/567 (7%)
Query: 1146 AIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA 1205
AIP L LL + A + QL+K S +M + A+ + +
Sbjct: 15 AIPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 72
Query: 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESL-FSADHI 1264
T L L E + LV +L + A L +L +
Sbjct: 73 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132
Query: 1265 RNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRI 1324
+ A +Q +V +LN + L L N L + + L I
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII--LASGGPQALVNI 190
Query: 1325 LSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK 1384
+ + +L + + VL + + + A ++ L L + + L
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250
Query: 1385 LVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444
L D + G + LV LL + + + L L + K+ + + G IE
Sbjct: 251 LSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 1445 SVLDILHEAPDFL------CSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGP 1498
+++ + A D A L + + LL P
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 1499 DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEE 1558
+ + ++ N+ P A L AI L+ LL Q+ + + E
Sbjct: 369 L-IKATVGLIRNLALCPANHAP--LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 1559 QLQKDPVTQQVIGPL---IRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKI 1615
++ + + + G L R + + I I + V + L P E + L +
Sbjct: 426 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL-LYSPIENIQRVAAGVLCE- 483
Query: 1616 ILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLV 1675
L D A+ A A L LL S +EG + L
Sbjct: 484 -LAQDKEAAEAIEAEGA------------------TAPLTELLHSRNEGVATYAAAVLFR 524
Query: 1676 LESDDGTSAEAMAESGAIEALLELLRS 1702
+ D + + ++E L R+
Sbjct: 525 MSED---KPQDYKKRLSVELTSSLFRT 548
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-40
Identities = 104/627 (16%), Positives = 199/627 (31%), Gaps = 60/627 (9%)
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
+QD + +AIP L LL E+ AA V L + + + +
Sbjct: 5 YQDDAELAT----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI-MRSPQMVS 59
Query: 1095 GLISLLG-CADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDL 1153
++ + D + L L + + IPALV +
Sbjct: 60 AIVRTMQNTNDVETA-------RCTAG------TLHNLSHHREGLLAIFKSGGIPALVKM 106
Query: 1154 LKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
L F A+ L L K+ + AG L+ + L+ L
Sbjct: 107 LGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164
Query: 1214 LGILFSSAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIRNAESARQ 1272
+ + + E + A LV ++R ++ ++ L+ L + A
Sbjct: 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 224
Query: 1273 AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSME 1332
+Q L L +R + L R LS+ ++ + + L ++L S+
Sbjct: 225 GMQALGLHLTDPSQRLVQNCLWTL-RNLSDAATKQEGME----GLLGTLVQLLGSDDINV 279
Query: 1333 LKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSPAQHSVVRALDKLV---- 1386
+ A L + N + + V +E LV ++ + + AL L
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339
Query: 1387 DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESV 1446
+ E V H + +V LL+ ++ + L++ P+ + + G I +
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399
Query: 1447 LDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQ 1506
+ +L A + G+ +
Sbjct: 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRM---------------------EEIVEGCTG 438
Query: 1507 VLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVT 1566
L + R + I + LL SP +Q++AA +L L +++ +
Sbjct: 439 ALHILARDVHNRI--VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 1567 QQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHA 1626
+ PL +L S + A L ++ P + K V EL+ + + +P A
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-ELTSSLFRTEPM---A 552
Query: 1627 LWESAASVLSSILQFSSEFYLEVPVAV 1653
E+A L Q Y + +
Sbjct: 553 WNETADLGLDIGAQGEPLGYRQDDPSY 579
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 1e-36
Identities = 97/555 (17%), Positives = 172/555 (30%), Gaps = 53/555 (9%)
Query: 1437 MVKAGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE 1495
+ I + +L E + A + ++ A + ++V + + +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 1496 FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL 1555
+ L N+ H + + I L+ +L SP +V A L +LL
Sbjct: 70 -DVETARCTAGTLHNLSHHREGLLA--IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126
Query: 1556 LEEQLQKDPVTQ-QVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGGVTE 1611
L ++ K V + ++ +L L +A I GG
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186
Query: 1612 LSKIILQADPSLPHALWESAA--SVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGS 1669
L I+ + LW ++ VLS + L L S+ V
Sbjct: 187 LVNIM--RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244
Query: 1670 LNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVL-LNNGKIRESK 1726
L L L SD T + G + L++LL S AA +L L NN K +
Sbjct: 245 LWTLRNL-SDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301
Query: 1727 ATKSAILPLSQYLLD----PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNV 1782
I L + +L L L + E + +V +
Sbjct: 302 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ-EAEMAQNAVRLHYGLPVVVKL 360
Query: 1783 LEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVK 1842
L + + ++NL + +N + E G + ++ L+ + +T + +M
Sbjct: 361 LHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM--- 416
Query: 1843 LLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATL 1902
++ E V T A+ + A N ++ LN
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALH--ILARDVHNRIVIRGLNT---------------- 458
Query: 1903 SIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSG 1962
IP V L + E Q A L + A+++ A A L L+ S
Sbjct: 459 -IPLFVQLLYSPIENIQRVAAGVL-------CELAQDKEAAEAIEAEGATAPLTELLHSR 510
Query: 1963 PPRFQEKAEFLLQCL 1977
A +L +
Sbjct: 511 NEGVATYAAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 6e-36
Identities = 86/510 (16%), Positives = 170/510 (33%), Gaps = 48/510 (9%)
Query: 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 420
+V + T L +L + + + S LV ++ + V
Sbjct: 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 118
Query: 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480
+ L L ++ A++ G+Q +++LL ++ + + L +L+ N +SK I
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 481 TAAGGIPPLVQILESGSAKAKEDSAS-ILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
A+GG LV I+ + + + + S +L+ L S + A VE A + AL L + S
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPS 237
Query: 540 ANGKEIAAKTLNHLIHKSDTAT-----ISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 594
+ TL +L + + L LL SD L ++ +
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL---TCNN 294
Query: 595 DILREGSAANDAVETMIKIL--SSTKEETQAKSASALAGI---FETRKDLRESSIAVKTL 649
+ +E +++ + + +E+ + AL + + + + + L
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354
Query: 650 WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQ 709
V+KLL S L++A+ L N + A+ LV L + +
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA-PLREQGAIPRLVQLLVRAHQDTQRR 413
Query: 710 ATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTIT 769
+ V + I E A+ L I
Sbjct: 414 TSMGGTQQQFVEGVRMEEIVEG-------------------CTGALHILARDVHNRIVIR 454
Query: 770 DCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSIT 829
T+ V L S ++ A L L++ A+ ++ +
Sbjct: 455 G----LNTIPLFVQLLYSPIENIQ-RVAAGVLCELAQDKEAAEAIEAE--------GATA 501
Query: 830 PIVSSIADATPLLQDKAIEILSRLCRDQPA 859
P+ + + A +L R+ D+P
Sbjct: 502 PLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-28
Identities = 84/531 (15%), Positives = 165/531 (31%), Gaps = 74/531 (13%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
A ++ L+ + ++ + + + ++ T A L L
Sbjct: 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA---------RCTAGTLHNL 84
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
R+ + A IP L +L S + ++A + +L G ++V +G
Sbjct: 85 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQ 143
Query: 1095 GLISLLGCADAD----------------------------VQDLLDL--SEEFALVRYPD 1124
+++LL + Q L+++ + + + +
Sbjct: 144 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203
Query: 1125 QVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIV 1184
L+ L + + AL L L L L+
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDA---ATKQ 258
Query: 1185 MVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG 1244
G L L + L + AA L + ++ + + + LV + G
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318
Query: 1245 --RGARYSAAKALESLFS----ADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVR 1298
A AL L S A+ +NA + +V++L+ A L+R
Sbjct: 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 378
Query: 1299 LLSENPSRALAVADVEMNAVDVLCRILSSNC---------------------SMELKGDA 1337
L+ P+ + E A+ L ++L E+
Sbjct: 379 NLALCPANHAPL--REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436
Query: 1338 AELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAA 1397
+L + R + + V LL + Q L +L D++ AE + A
Sbjct: 437 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 1398 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448
GA PL LL+ RN + + L ++ +D+P + + + S+
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 8e-26
Identities = 106/648 (16%), Positives = 192/648 (29%), Gaps = 71/648 (10%)
Query: 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLC 741
++ A +A A+ L L V +A + L + ++ A
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 742 EGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDAL 801
+ T +T A S + ++G + ALV L S SV A+ L
Sbjct: 66 QNTNDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTL 122
Query: 802 AILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVL 861
L H + A + + +V+ + + L L
Sbjct: 123 HNLLL------HQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES- 174
Query: 862 GDEVTGASGCISSIARRVISCTNPKVKIGGAALL--ICAAKVNHQRIVEDLNHSNSCAPL 919
+ ASG ++ + + T K+ + +L + N IVE A
Sbjct: 175 -KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE--------AGG 225
Query: 920 IQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARN-----GG--------ESESST 966
+Q+L L+ ++N + R S+ A G S+
Sbjct: 226 MQALGLHLTDPSQRLVQN-------CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 278
Query: 967 AVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWI 1026
V A +L L C++ K K+++ + G ++ L + L + D E +I
Sbjct: 279 VVTC----AAGILSNLTCNNYKNKMMVCQVGGIEAL---VRTVLRAGDREDITE-PAICA 330
Query: 1027 CALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLS 1086
L + + A +P++ LL A +
Sbjct: 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPANHAP 389
Query: 1087 VANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQV---------ALERLFRVEDI 1137
+ GA L+ LL A D Q + ++ AL L R
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 449
Query: 1138 RVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKY 1197
R+ IP V LL +A G L +LA+D + GA LT+
Sbjct: 450 RIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTEL 506
Query: 1198 LSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALES 1257
L + AA L + + + +V ++ R +A L+
Sbjct: 507 LHSRNEGVATYAAAVLFRMSEDKPQDYK---KRLSVELTSSLFRTEPMAWNETADLGLDI 563
Query: 1258 LFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS 1305
+ + P ++G + + ++
Sbjct: 564 GAQGE-----PLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEMGGHH 606
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 6e-14
Identities = 48/302 (15%), Positives = 95/302 (31%), Gaps = 28/302 (9%)
Query: 1685 EAMAESGAIEALLELLRSH---QCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLD 1741
+A + AI L +LL + A + ++ + + + + + +
Sbjct: 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67
Query: 1742 PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQN 1801
L +L + + ALV +L P + + AI L N
Sbjct: 68 TNDVETARC--TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHN 124
Query: 1802 LVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRA 1861
L+++ K AV AGG+Q ++ L+ ++ + +++L Y + E+
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-------AYGNQESKLI 177
Query: 1862 ITA--AIEK--ELWATGTVNEEYLKALNALFN--NFPRLRATEPATLSIPHLVTALKTGS 1915
I A + + T T + L + + L L S
Sbjct: 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 1916 EATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQ 1975
+ + L L L ++ + Q + L L+ S A +L
Sbjct: 238 QRLVQNCLWTLRNL--------SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILS 288
Query: 1976 CL 1977
L
Sbjct: 289 NL 290
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 5e-33
Identities = 67/483 (13%), Positives = 153/483 (31%), Gaps = 54/483 (11%)
Query: 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAH-VCFLLACMMEEDVSVCSRV 223
G + + ++ +VK + +Q + E +
Sbjct: 37 GTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96
Query: 224 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS 283
+ A + + LG + + ++ E+A AL +++ + + + IPA I+ +P
Sbjct: 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 156
Query: 284 KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343
+ E A+ AL NI+G + + L + L +
Sbjct: 157 AH---------ISEQAVWALGNIAGDG-----------SAFRDLVIKHGAIDPLLALLAV 196
Query: 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR 403
D + + TL N + + P + + L
Sbjct: 197 PDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL-------------------P 235
Query: 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSV 463
LV L+ EV + A+ L + + + + L+ LLG + ++
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Query: 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 523
+ + D+ + AG + +L + ++++ + N+ +D V
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQ---------LTALLTSDLP 574
+ VP L+ +L ++ AA + + I L LL++
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 575 ESKVYVLDALKSMLSV---VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 631
+ +LDA+ ++ + ++ L ++ + + E S + +
Sbjct: 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475
Query: 632 IFE 634
F
Sbjct: 476 YFS 478
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 4e-30
Identities = 76/428 (17%), Positives = 160/428 (37%), Gaps = 18/428 (4%)
Query: 442 EGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL-ESGSAK 499
++ ++ + ++ E Q + + A LLS E I AG IP V L ++ +
Sbjct: 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 116
Query: 500 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559
+ +SA L N+ + + + V A+PA + LL + A+ E A L ++
Sbjct: 117 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176
Query: 560 AT--------ISQLTALLTS-DLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVET 609
I L ALL DL L L LS + + A + T
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 610 MIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASR 669
++++L E A S A++ + + + E + + ++KLL I+ A R
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIA 729
+ I E + + AL+ L +P + ++AT ++N+ + + +
Sbjct: 297 AIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 730 EEIILPATRVLCE-GTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA 788
++P + + AA AI ++ + + G + L++ L +
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY--LVHCGIIEPLMNLLSAK 413
Query: 789 SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIE 848
+ LDA++ + ++ G + ++ E + I + + ++
Sbjct: 414 DTKIIQ-VILDAISNIFQAAEKLGETEKLSIMIEEC-GGLDKIEALQRHENESVYKASLN 471
Query: 849 ILSRLCRD 856
++ +
Sbjct: 472 LIEKYFSV 479
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 9e-26
Identities = 57/353 (16%), Positives = 120/353 (33%), Gaps = 16/353 (4%)
Query: 383 LASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRE 442
L S P + + + + L + +Q E AL + + +A+
Sbjct: 84 LLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 143
Query: 443 GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502
I ISLL E +V L ++ + + + G I PL+ +L
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 503 DS-----ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557
L NLC + +P L+ LL + + +++L
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 558 DTAT--------ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVET 609
+ + QL LL + L A+ + +V+ +D + A+
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN---IVTGTDEQTQKVIDAGALAV 320
Query: 610 MIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASR 669
+L++ K Q ++ ++ I R+D + + + ++ +L EA+
Sbjct: 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 380
Query: 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722
+ + V V + PL+ L + ++ + A++N+ +E
Sbjct: 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-24
Identities = 80/482 (16%), Positives = 159/482 (32%), Gaps = 55/482 (11%)
Query: 1248 RYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRA 1307
+ AD N + +V+ +V+ +N+ Q A A +LLS
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 1308 LAVADVEMNAVDVLCRILSSNCSMELKGDAA-ELCGVLFGNTRIRSTVAAARCVEPLVSL 1366
+ + + L ++ ++A L + G + V + +SL
Sbjct: 93 IDNI-IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 151
Query: 1367 LVTEFSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNY-----MLHEAIS 1420
L + + V AL + D +LV HGA+ PL+ LL + ++
Sbjct: 152 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211
Query: 1421 RALVKLGKDRPSCKLEMVKAGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAGIAKGPS 1479
L L +++ ++ +++ +L H P+ L + + + +
Sbjct: 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 271
Query: 1480 AAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSP 1539
VV L LL +E AL+ + NI+ + + A+ LL +P
Sbjct: 272 KKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNP 328
Query: 1540 APAVQQLAAELLSHLLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALT 1598
+Q+ A +S++ Q Q V ++ L+ VL Q+ A A+ +
Sbjct: 329 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388
Query: 1599 WPNE----IAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVL 1654
E + G + L ++ D + + +S+I Q
Sbjct: 389 GTVEQIVYLVHCGIIEPLMNLLSAKDTK----IIQVILDAISNIFQA------------- 431
Query: 1655 VRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARL 1712
+G L + + E G ++ + L R + + L
Sbjct: 432 ---------AEKLGETEKL----------SIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 1713 LE 1714
+E
Sbjct: 473 IE 474
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 8e-24
Identities = 68/439 (15%), Positives = 139/439 (31%), Gaps = 28/439 (6%)
Query: 1556 LEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN----EIAKEGGVTE 1611
+ + + +++ + S Q +A +A + I + G + +
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 104
Query: 1612 LSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEV----PVAVLVRLLRSGSEGTVI 1667
+ + D S + +A L++I +SE V + + LL S
Sbjct: 105 FVSFLGKTDCS---PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLL--------NN 1719
++ AL + D + + + GAI+ LL LL A L L N
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 1720 GKIRESKATKSAILPLSQYLL--DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACR 1777
A + + L + L DP+ A ++ L G + E + +
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK----GVVP 277
Query: 1778 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQA 1837
LV +L + A+ A+ N+V + + V +AG + V L+ + +A
Sbjct: 278 QLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 1838 AMFVKLLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKAL-NALFNNFPRLRA 1896
+ + + Q + + A +E A+ N
Sbjct: 337 TWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV 395
Query: 1897 TEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQ 1956
I L+ L + LDA+ + QA + + + ++
Sbjct: 396 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 455
Query: 1957 YLIQSGPPRFQEKAEFLLQ 1975
L + + + L++
Sbjct: 456 ALQRHENESVYKASLNLIE 474
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 62/481 (12%), Positives = 154/481 (32%), Gaps = 61/481 (12%)
Query: 84 ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVP 143
+ + + + ++ + S++ E Q+ A + + + + G++P
Sbjct: 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI--DNIIRAGLIP 103
Query: 144 VLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQA 203
L + + AL N+++ T A V G I + LL +
Sbjct: 104 KFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 204 HVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE----ASVRAEAAGALKSLSDHC 259
+ L + + + V+ A LL LL + L +L +
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 260 KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQ 319
A A +P ++ E + ++ A++ ++ G + I + +
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPE---------VLADSCWAISYLTDGPNERIEMVVK 272
Query: 320 SLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERT 379
G + + + + ++ IV L R
Sbjct: 273 K--------------GVVPQLVKLLGA-------TELPIVTPAL--------------RA 297
Query: 380 IEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 439
I + + G + K+ ++ A + L+T +Q+E + + + +
Sbjct: 298 IGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355
Query: 440 GREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA 498
+ L+ +L + + Q+E + A+ S + + G I PL+ +L +
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415
Query: 499 KAKEDSASILRNLCN------HSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH 552
K + + N+ +E + +E + + L ++ + + + + +
Sbjct: 416 KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475
Query: 553 L 553
Sbjct: 476 Y 476
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 77/529 (14%), Positives = 172/529 (32%), Gaps = 70/529 (13%)
Query: 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR 64
L +++ + Q + + + S G+ + +V +V +
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67
Query: 65 SGSLAVKIQAATVLGSL--CKENELRVKVLLGGCIPPLLGLL-KSSSAEGQIAAAKTIYA 121
S +L ++QA L ++ ++ G IP + L K+ + Q +A +
Sbjct: 68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127
Query: 122 VSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAAT 181
++ G +K G +P L + ++ + + AL N++ F
Sbjct: 128 IASG---TSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVW-ALGNIAGDGSAFRDLV 181
Query: 182 VQAGGIDILVKLLTLGQSSTQ-----AHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 236
++ G ID L+ LL + ST ++ + L+ + L++LL
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 237 GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQ 296
+ V A++ A+ L+D + + +P ++ A +
Sbjct: 242 HHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---------LPIV 291
Query: 297 ENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356
A+ A+ NI G + A L S L + K +
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVID-----------AGALAVFPSLL-------TNPKTN-- 331
Query: 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK-LENSEAKRLLVGLITMATNE 415
+Q+ ++++ I+ + N LVG+++ A +
Sbjct: 332 ------------------IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 416 VQEELVRALLKLC-NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN--- 471
Q+E A+ L I+ L++LL + + + + +
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Query: 472 ---ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 517
E + I GG+ + + + + S +++ + E+
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 3e-19
Identities = 69/443 (15%), Positives = 150/443 (33%), Gaps = 36/443 (8%)
Query: 1436 EMVKAGVIES-VLDILHEAPDFLCSAFAELLRILTNNA-GIAKGPSAAKVVEPLFLLLTR 1493
+ +E V I + A ++L+ A ++ L +
Sbjct: 52 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 111
Query: 1494 SEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1553
++ Q + L NI + ++ AI I LL SP + + A L +
Sbjct: 112 TDC-SPIQFESAWALTNIASGTSEQTK-AVVDGGAIPAFISLLASPHAHISEQAVWALGN 169
Query: 1554 LLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALT--------WPNEIA 1604
+ + +D V + I PL+ +L ++ L+ P A
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229
Query: 1605 KEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVP----VAVLVRLLRS 1660
E + L +++ DP + + +S + +E V V LV+LL +
Sbjct: 230 VEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285
Query: 1661 GSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVLLN 1718
V +L A+ + + + + ++GA+ LL + + + A + +
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345
Query: 1719 NGKIRESKATKSAILPLSQYLL---DPQTQAQQARLLATLALGDLFQNEGLARSADAVSA 1775
+ + + ++P +L D +TQ + A + G + +
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII-- 403
Query: 1776 CRALVNVLEEQPTEEMKVVAICALQNLVMYSRS------NKRAVAEAGGVQVVLDLIGSS 1829
L+N+L + T+ + V + A+ N+ + + E GG+ + L
Sbjct: 404 -EPLMNLLSAKDTK-IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 461
Query: 1830 DPETSVQAAMFVKLLFSNHTIQE 1852
+ + ++ FS ++
Sbjct: 462 NESVYKASLNLIEKYFSVEEEED 484
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 6e-19
Identities = 59/425 (13%), Positives = 133/425 (31%), Gaps = 30/425 (7%)
Query: 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL-CNH 514
+ + D T + +V+ + S + +++ + R L
Sbjct: 29 QHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE 88
Query: 515 SEDIRACVESADAVPALLWLLKNGSANGK---------EIAAKTLNHLIHKSDTATISQL 565
+ + A +P + L + IA+ T D I
Sbjct: 89 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148
Query: 566 TALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKS 625
+LL S + AL ++ R+ + A++ ++ +L+ T A
Sbjct: 149 ISLLASPHAHISEQAVWALGNI---AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
Query: 626 ASA-----LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680
L+ + + + L ++++LL +L ++ ++ +
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL-TDGPN 264
Query: 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPA-TRV 739
R V + + LV L G+ L + A A+ N++ ++ + + + L +
Sbjct: 265 ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324
Query: 740 LCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALD 799
L + + A ++ + V G V LV L A EA
Sbjct: 325 LTNPKTNIQKEATWTMSNIT---AGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAW 380
Query: 800 ALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859
A+ SG L I P+++ ++ + ++ +S + +
Sbjct: 381 AITNY-----TSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434
Query: 860 VLGDE 864
+ E
Sbjct: 435 LGETE 439
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-14
Identities = 65/476 (13%), Positives = 147/476 (30%), Gaps = 37/476 (7%)
Query: 936 RNQGNDDKEAISIYRYTSEEARNGG--------ESESSTAVIFGENLAIWLLCVLACHDE 987
+ G DD + +++ N S + + + +L+ +
Sbjct: 34 PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQL---QATQAARKLLSREKQ 90
Query: 988 KCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATM 1047
I+ AG + + + Q + L I + +A
Sbjct: 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFE--------SAWALTNIASGTSEQTKAVVDG 142
Query: 1048 KAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADV 1107
AIP +LL S + A A+ ++ +GS L V GA L++LL D
Sbjct: 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL-VIKHGAIDPLLALLAVPDLST 201
Query: 1108 QDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLA 1167
+R + +P LV LL D P +
Sbjct: 202 LAC-------GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-HND-PEVLADS 252
Query: 1168 LGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHE 1227
+ L ++V+ G + L K L A + I+ + E +
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 1228 SAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLER 1287
A++ ++L + A + ++ + + + + P + + + +
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372
Query: 1288 EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDA------AELC 1341
+ A + + + V V ++ L +LS+ + ++ +
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 1342 GVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL--VDDEQLAELV 1395
L ++ + ++ + +L E + + ++K V++E+ +V
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 45/331 (13%), Positives = 106/331 (32%), Gaps = 25/331 (7%)
Query: 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF-----ETRKDLRESSIA 645
+ +DI N +VE ++K ++S E+Q ++ A + ++ + +
Sbjct: 43 KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL- 101
Query: 646 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE 705
+ V L I E++ L I E A V A+ + L SP
Sbjct: 102 IPKF--VSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGGAIPAFISLLASPHAH 158
Query: 706 VAEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIA--RLLHSR 762
++EQA AL N+ D + + + +L +S L +
Sbjct: 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218
Query: 763 KIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLA 822
+ + LV L V ++ A++ L+ +++
Sbjct: 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA-DSCWAISYLTD------GPNERIEMVV 271
Query: 823 EFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISC 882
+ + +V + + A+ + + + +G ++ +++
Sbjct: 272 KK-GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE--QTQKVIDAGALAVFP-SLLTN 327
Query: 883 TNPKVKIGGAALL--ICAAKVNHQRIVEDLN 911
++ + I A + + + V +
Sbjct: 328 PKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 33/253 (13%), Positives = 75/253 (29%), Gaps = 15/253 (5%)
Query: 1731 AILPLSQYLL--DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPT 1788
++ + + + + ++Q Q + L + A + V+ L +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK---FVSFLGKTDC 114
Query: 1789 EEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLL--FS 1846
++ + AL N+ + +AV + G + + L+ S S QA + +
Sbjct: 115 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174
Query: 1847 NHTIQEYASSETVRAITAAIEKELWATG--TVNEEYLKALNALFNNFPRLRATEPATLSI 1904
+ + + A + +T L+ L N + +
Sbjct: 175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234
Query: 1905 PHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPP 1964
P LV L + A+ L + + V +P L L+ +
Sbjct: 235 PTLVRLLHHNDPEVLADSCWAISYL------TDGPNERIEMVVKKGVVPQLVKLLGATEL 288
Query: 1965 RFQEKAEFLLQCL 1977
A + +
Sbjct: 289 PIVTPALRAIGNI 301
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 9e-31
Identities = 81/504 (16%), Positives = 144/504 (28%), Gaps = 98/504 (19%)
Query: 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIA 114
+P V L S + A + C ++ + +V G I L+ LL+S + Q A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 115 AAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 174
AA GALRNL +
Sbjct: 64 AA------------------------------------------------GALRNLVFRS 75
Query: 175 EGFWAATVQAGGIDILVKLLTLGQS-STQAHVCFLLACMMEEDVSVCSRVLAADATKQLL 233
T + GI V LL + Q + LL + D L ADA L
Sbjct: 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--ELKEELIADALPVLA 133
Query: 234 KLL---------------GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINA 278
+ + V A G L++LS R+ + +G+ + A
Sbjct: 134 DRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMA 192
Query: 279 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALA 338
+ EN MC L N+S L + + + LE + A +
Sbjct: 193 YVQNCVA--ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF 250
Query: 339 SALMIYDSKAESTKP---------SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN 389
S P + + + + ++ T+EA A N
Sbjct: 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310
Query: 390 ----------PLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 439
+ + + + L+ ++V L + + +
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVM 368
Query: 440 GREGIQLLISLLGLS------SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 493
G + + LL SE + + L ++ + ++ +
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428
Query: 494 ESG-SAKAKEDSASILRNLCNHSE 516
S S KA E + +L ++ + E
Sbjct: 429 RSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 70/429 (16%), Positives = 145/429 (33%), Gaps = 43/429 (10%)
Query: 164 TGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRV 223
+++ E Q GGI LV LL + Q L ++ +
Sbjct: 23 AYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82
Query: 224 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS 283
+ ++ + LL A ++ + G L +LS D +E ++ +P + + I P
Sbjct: 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPF 140
Query: 284 KEFMQGEYAQA-------LQENAMCALANISGGLSN---------VISSLGQSLESCSSP 327
+ G + + NA L N+S + +I SL +++C +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200
Query: 328 AQVAD-TLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFK---------PRLPFLVQE 377
++ D ++ L + ++ P+ +E N + + ++
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260
Query: 378 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNE-VQEELVRALLKLCNNEGSLWR 436
L NP S L +S+A R + L+ + + E AL L ++G +
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320
Query: 437 -----ALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ 491
+G+ + LL + +LL +S + P + +
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTR 378
Query: 492 ILESGSAKAKEDSASI------LRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKE 544
+L S + + +RNL + S+ + ++ L ++ S E
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438
Query: 545 IAAKTLNHL 553
A L+ +
Sbjct: 439 AARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 7e-18
Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 25/459 (5%)
Query: 444 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKED 503
I + L E+ Q + +++ +K + GGI LV +L S + ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 504 SASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHL--IHKSDTA 560
+A LRNL S + + + + LL + G+A ++ L +L +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 561 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEE 620
I+ +L + D +M V ++ + ++ LSS
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC-------LRNLSSADAG 176
Query: 621 TQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680
Q +G+ ++ ++ +A + L + R A + R+
Sbjct: 177 RQT--MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL--SYRLDAEVPTRYRQ 232
Query: 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740
A A S + + C L + + S + I ++
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292
Query: 741 CEGTISGKTLAAAAIARLL---HSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEA 797
+ A A + L + + + L+S + V S
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS-G 351
Query: 798 LDALAILSRSGG-ASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRD 856
L+ +SR + + S T S+ D A + L
Sbjct: 352 ASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI----LSSACYTVRNLMAS 407
Query: 857 QPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALL 895
QP + +S +++I S +PK LL
Sbjct: 408 QPQ--LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 86.0 bits (212), Expect = 3e-17
Identities = 59/444 (13%), Positives = 139/444 (31%), Gaps = 47/444 (10%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVA 464
V ++ + Q + C + S + + GI L+ LL ++ Q+ +
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 465 LLCLLSNENDDSKWAITAAGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRACVE 523
L L + +K GI V +L +G+A+ ++ +L NL + E +
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI- 125
Query: 524 SADAVPALLWLL----KNGSANGKEIAAKTLNHLIHKSDTATISQLTA------------ 567
ADA+P L + ++ + ++ + + T + L++
Sbjct: 126 -ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184
Query: 568 ----LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQA 623
L + + KS+ + + L A ++ T+
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244
Query: 624 KSASALAGIFETRK------DLRESSIAVKTLWSVMKLLDVGSECILVEASR-------- 669
S + + L E K + + + L+ S+
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304
Query: 670 CLAAIFLSVREN------REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEV 723
A L+ + ++ + L + L S +V L+N+
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL- 363
Query: 724 SEKAIAEEIILPATRVLCEGTISGKT---LAAAAIARLLHSRKIDYTITDCVNRAGTVLA 780
+ + ++ TR+L T + + ++A + + + + +
Sbjct: 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423
Query: 781 LVSFLESASGSVATSEALDALAIL 804
+++ S++ A A L+ +
Sbjct: 424 IINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 1e-14
Identities = 72/510 (14%), Positives = 148/510 (29%), Gaps = 76/510 (14%)
Query: 1147 IPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDAT 1206
IP V L + ++ S K + + G + L L Q+
Sbjct: 4 IPKAVQYLSS--QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 1207 EEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIR 1265
+ AA L ++F S + + + V++LR G + L +L S+
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTDEL 120
Query: 1266 NAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRIL 1325
E A+ L + + + N SR + +V NA L R L
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDG---------NSNMSREVVDPEVFFNATGCL-RNL 170
Query: 1326 SSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL 1385
SS R + ++ L++ +
Sbjct: 171 SSA-----------------DAGRQT-MRNYSGLIDSLMAYV------------------ 194
Query: 1386 VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIES 1445
+A +V + +L+ +Y L + +L + + E G +
Sbjct: 195 --QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 1446 VLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSAL 1505
+ + + + L N + + + L+ +S+ +
Sbjct: 253 K------SDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK-DATLEACA 305
Query: 1506 QVLVNILEHPQCRADYS----LTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ 1561
L N+ + + + + LL S V + A LLS++ L
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL- 364
Query: 1562 KDPVTQQVIGPLIRVLGSGIHI------LQQRAVKALVSIALTWP---NEIAKEGGVTEL 1612
+ QV + R+L S + A + ++ + P + + +
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFS 1642
+ + E+A +LS +
Sbjct: 425 INLCRSSA---SPKAAEAARLLLSDMWSSK 451
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 70/487 (14%), Positives = 142/487 (29%), Gaps = 58/487 (11%)
Query: 1360 VEPLVSLLVTEFSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEA 1418
+ V L ++ Q + DE + V G + LV LL N + +A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1419 ISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGP 1478
+ AL L + KLE + I + +L + AE+ + LT
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN------AEIQKQLTGL------- 110
Query: 1479 SAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS 1538
L+ L + E + AL VL + + P S +
Sbjct: 111 --------LWNLSSTDELKEELIADALPVLADRVIIP--------FSGWCDGNSNMSREV 154
Query: 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALT 1598
P V A L +L + ++ + + + K++ +
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214
Query: 1599 WPNEIAKEGGVTELSKIILQADPSLPHALWESAA--SVLSSILQFSSEFYLEVPVAVLVR 1656
N + L+ + + S S S + ++ +
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274
Query: 1657 LLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVL 1716
I + L+ +S + EA AL L S + L L
Sbjct: 275 GSGWLYHSDAIRTYLNLMG-KSKKDATLEA-----CAGALQNLTASKGLMSSGMSQLIGL 328
Query: 1717 LNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSAC 1776
G + +++ L + ++ L ++ ++ L
Sbjct: 329 KEKG-----------LPQIARLLQSGNSDVVRS---GASLLSNMSRHPLL-HRVMGNQVF 373
Query: 1777 RALVNVLEE-----QPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDP 1831
+ +L +E++ A ++NL+ + + + +++L SS
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433
Query: 1832 ETSVQAA 1838
+ +AA
Sbjct: 434 PKAAEAA 440
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 56/491 (11%), Positives = 133/491 (27%), Gaps = 99/491 (20%)
Query: 1529 IEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQR 1587
I + L S Q + A + H +++ K V Q I L+ +L S +QQ
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1588 AVKALVSIALTWPN---EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSS- 1643
A AL ++ E ++ G+ E ++ + + + +L ++
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ---KQLTGLLWNLSSTDEL 120
Query: 1644 -EFYLEVPVAVLVRLLRSGSEGTVIGSLN----------------ALLVLESDDGTSAEA 1686
E + + VL + G G+ N L L S D
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 1687 MAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQA 1746
SG I++L+ +++ ++ L + +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDK------------------SVENCMCVLHNLSYRL 222
Query: 1747 QQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYS 1806
L +N A + + + C + ++ + + +
Sbjct: 223 DAEVPTRYRQLEYNARN---AYTEKSSTGCFSN---KSDKMMNNNYDCPLPEEET----N 272
Query: 1807 RSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITAAI 1866
+ + ++ L+L+G S + +++A + + + +
Sbjct: 273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG 332
Query: 1867 EKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDAL 1926
+P + L++G+ + L
Sbjct: 333 -------------------------------------LPQIARLLQSGNSDVVRSGASLL 355
Query: 1927 FLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIK 1986
+ + V P + L+ S + L T+ ++
Sbjct: 356 SNM--------SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC-YTVRNLMA 406
Query: 1987 RGNNMKQSVGN 1997
+ + +
Sbjct: 407 SQPQLAKQYFS 417
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 70/542 (12%), Positives = 135/542 (24%), Gaps = 98/542 (18%)
Query: 692 LSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTL 750
+ V S + + + E +++ + + + +L + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 751 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGA 810
AA A+ L+ T R + VS L + + L LS +
Sbjct: 64 AAGALRNLVFR---STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-- 118
Query: 811 SGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASG 870
+K IADA P+L D+ I SG
Sbjct: 119 --ELKEEL----------------IADALPVLADRVII------------------PFSG 142
Query: 871 CISSIARRVISCTNPKVKIGGAALL--ICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLS 928
+ +P+V L + +A Q + + LI SL+ +
Sbjct: 143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-------YSGLIDSLMAYVQ 195
Query: 929 VVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEK 988
A+ + + + L +
Sbjct: 196 NCVAASRCD----------------------------DKSVENCMCVLHNLSYRLDAEVP 227
Query: 989 CKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMK 1048
+ +E A + T++ S ++ + + A
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGT-LLSVANSGAAGGLISLLGCADADV 1107
+ ++ K A Q + + S G L + LL ++DV
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347
Query: 1108 QDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLL----KPIPDRPGA 1163
L + R + + P + LL +
Sbjct: 348 V-------RSGAS------LLSNMSRHPLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDI 393
Query: 1164 PFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEI 1223
A + L P + L + EAA LL ++SS E+
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453
Query: 1224 RR 1225
+
Sbjct: 454 QG 455
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 2e-30
Identities = 100/512 (19%), Positives = 178/512 (34%), Gaps = 66/512 (12%)
Query: 21 SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 80
+ Q + SL L L R+ +P ++++L AVK AA L
Sbjct: 18 WAPLAQHERGSLASLDSL---RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQH 74
Query: 81 LCKENE-LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE 139
LC N+ ++ V IP L+GLL E + A + +S G +D
Sbjct: 75 LCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG--RDQDNKIAIKNC 132
Query: 140 GVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQS 199
VP L L+ + ++TG L NLS+ + + L + + S
Sbjct: 133 DGVPALVRLLRKARDMD--LTEVITGTLWNLSSHDS--IKMEIVDHALHALTDEVIIPHS 188
Query: 200 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 259
+ E SV + AG L+++S
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNT-------------------------AGCLRNVSSER 223
Query: 260 KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQ 319
+ARR++ +G+ + + Q + L EN +C L N+S + I +
Sbjct: 224 SEARRKLRECDGLVDALIFIVQAEIG--QKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281
Query: 320 SLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERT 379
E+ + A T A L+ V + ++ K + E +
Sbjct: 282 YQEAAPNVANNTGTSPARGYELLFQPE------------VVRIYISLLKESKTPAILEAS 329
Query: 380 IEALASL-----YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL 434
A+ +L + L +A + L+T V + AL L + +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN- 388
Query: 435 WRALQGREGIQLLISLL-----GLSSEQQQECSVALLCLLSN---ENDDSKWAITAAGGI 486
+ L G+ I L+ L S ++ +++L ++ EN ++ + GI
Sbjct: 389 -KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447
Query: 487 PPLVQILESG--SAKAKEDSASILRNLCNHSE 516
LV I +SG S K +A +L+ + + E
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 115 bits (287), Expect = 4e-26
Identities = 79/518 (15%), Positives = 159/518 (30%), Gaps = 72/518 (13%)
Query: 50 GSHSQAVPVLVSLLRSGSLAVKIQAATVLGSL--CKENELRVKVLLGGCIPPLLGLLKSS 107
GS + V + + L SL ++ +P ++ +L
Sbjct: 1 GSPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR 60
Query: 108 SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGAL 167
+ AA L
Sbjct: 61 LDAVKSNAA------------------------------------------------AYL 72
Query: 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM-MEEDVSVCSRVLAA 226
++L + + GI +LV LL + C L + D +
Sbjct: 73 QHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC 132
Query: 227 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK-- 284
D L++LL + + G L +LS H D+ + + + A+ + I P
Sbjct: 133 DGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHALHALTDEVIIPHSGW 190
Query: 285 EFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALA-SALMI 343
E E + L N +G L NV S ++ + D L + + +
Sbjct: 191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250
Query: 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK-LENSEAK 402
DS ++ + L+ + + QE + +P + L E
Sbjct: 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV 310
Query: 403 RLLVGLITMATN-EVQEELVRALLKLCNNEGSLWRALQG----REGIQLLISLLGLSSEQ 457
R+ + L+ + + E A+ LC + R ++ + + + LL E+
Sbjct: 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHER 370
Query: 458 QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDS--------ASILR 509
+ + L L+ + +K I IP LV+ L G + + + +
Sbjct: 371 VVKAASGALRNLA-VDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428
Query: 510 NLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAA 547
+ + + + + L+ + K+G+ + KE+ A
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA 466
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 87.3 bits (215), Expect = 2e-17
Identities = 64/415 (15%), Positives = 140/415 (33%), Gaps = 23/415 (5%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVA 464
++ ++ + V+ L LC + ++ +GI +L+ LL ++ +
Sbjct: 53 VIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACG 112
Query: 465 LLCLLS-NENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACV 522
L +S + D+K AI G+P LV++L E L NL +H V
Sbjct: 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172
Query: 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582
+ A ++ + + H+ +S + ++S+ E++ + +
Sbjct: 173 DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE 232
Query: 583 ALKSMLSVVSF-SDILREGSAANDAVETMIKIL-------------SSTKEETQAKSASA 628
+ +++ + + + + VE + +L + +E A+
Sbjct: 233 CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292
Query: 629 LAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAV 687
+L V+ S++K A + L A + A
Sbjct: 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352
Query: 688 ARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISG 747
ALS + L + V + A+ AL NL +D+ +++ I + I + L G +
Sbjct: 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNS 411
Query: 748 KT-----LAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEA 797
+ + + + + + LV +S + S A
Sbjct: 412 SWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA 466
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 81.2 bits (199), Expect = 2e-15
Identities = 78/483 (16%), Positives = 165/483 (34%), Gaps = 62/483 (12%)
Query: 1285 LEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVL 1344
L + + ++A+L L P + + +L AA L +
Sbjct: 21 LAQHERGSLASLDSLRKGGPPPPNWRQ----PELPEVIAMLGFRLDAVKSNAAAYLQHLC 76
Query: 1345 FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAHGAVI 1402
+ N ++++ V + + LV LL AL + D+ + V
Sbjct: 77 YRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP 136
Query: 1403 PLVGLLYGRNYM-LHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAF 1461
LV LL M L E I+ L L S K+E+V + +++ +
Sbjct: 137 ALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPN 195
Query: 1462 -------AELLRILTNNAGI------------AKGPSAAKVVEPLFLLL----TRSEFGP 1498
E +LTN AG K +V+ L ++ + +
Sbjct: 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS 255
Query: 1499 DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQL--AAELLSHLLL 1556
+ + +L N+ + +A + + +L E++ +
Sbjct: 256 KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYIS 315
Query: 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKII 1616
+ K P + I+ L +G + A + +E ++ ++ ++
Sbjct: 316 LLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA-----------LRQEKALSAIADLL 364
Query: 1617 LQADPSLPHALWESAASVLSSILQFSS--EFYLEVPVAVLVRLLRSG--------SEGTV 1666
+ ++A+ L ++ + E + + LV+ L G SE TV
Sbjct: 365 TNEHERV----VKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420
Query: 1667 IGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE----ETAARLLEVLLNNGKI 1722
I LN + + +++ +A+ + E+ IE L+ + +S AA +L+ + ++
Sbjct: 421 ISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480
Query: 1723 RES 1725
R+
Sbjct: 481 RKP 483
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 78.5 bits (192), Expect = 1e-14
Identities = 63/481 (13%), Positives = 137/481 (28%), Gaps = 57/481 (11%)
Query: 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 523
+L L S +P ++ +L K ++A+ L++LC ++ ++ V
Sbjct: 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR 87
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDA 583
+P L+ LL + A L ++ D + + A
Sbjct: 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC----------DGVPA 137
Query: 584 LKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 643
L +L D+ + + + + ++ A T + + S
Sbjct: 138 LVRLLRKARDMDLTEVITGT---------LWNLSSHDSIKMEIVDHALHALTDEVIIPHS 188
Query: 644 IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV 703
+ K + E +L + CL + E R + L+ + + +
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248
Query: 704 LE------VAEQATCALANL--ILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAI 755
+ + E C L NL + E+ + +E G L
Sbjct: 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYEL----- 303
Query: 756 ARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVK 815
+ + V +S L+ + + A+ L G
Sbjct: 304 ----------------LFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347
Query: 816 PAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSI 875
+ K+++ I + + + A L L D ++ I ++
Sbjct: 348 RSALRQE---KALSAIADLLTNEHERVVKAASGALRNLAVDAR----NKELIGKHAIPNL 400
Query: 876 ARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSC--APLIQSLVTMLSVVEAS 933
+ + +I ++ I E+L + I+ LV + S
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460
Query: 934 P 934
Sbjct: 461 E 461
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 75.0 bits (183), Expect = 1e-13
Identities = 74/487 (15%), Positives = 152/487 (31%), Gaps = 55/487 (11%)
Query: 1172 IQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFA 1231
+ L + L AA L + + + +++
Sbjct: 31 SLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90
Query: 1232 AVSQLVAVLRLGGRGARYSAAKALE--SLFSADHIRNAESARQAVQPLVEILNTGLEREQ 1289
+ LV +L + A AL+ S + A V LV +L + +
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 1290 HAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1349
I + LS + S + + D +A+ L + S + +
Sbjct: 151 TEVITGTLWNLSSHDSIKMEIVD---HALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207
Query: 1350 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLY 1409
+ + A C+ + S E +L G V L+ ++
Sbjct: 208 VLTNT--AGCLRNVSS--------------------ERSEARRKLRECDGLVDALIFIV- 244
Query: 1410 GRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILT 1469
+ + + LV + C L + V + +A + +A T
Sbjct: 245 -QAEIGQKDSDSKLV----ENCVCLLR----NLSYQVHREIPQAERYQEAAPNVANNTGT 295
Query: 1470 NNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADY---SLTSH 1526
+ A + +VV LL S+ P ++ + N+ Y +L
Sbjct: 296 SPARGYELLFQPEVVRIYISLLKESKT-PAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354
Query: 1527 QAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1586
+A+ + LL + V + A+ L +L ++ + K+ + + I L++ L G
Sbjct: 355 KALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSW 413
Query: 1587 RAVKALVSIALTWPNE-----------IAKEGGVTELSKIILQADPSLPHALWESAASVL 1635
+ V L NE + + G+ +L +++ + +AA VL
Sbjct: 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL--VLINKSGNRSEKEVRAAALVL 471
Query: 1636 SSILQFS 1642
+I +
Sbjct: 472 QTIWGYK 478
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 73.1 bits (178), Expect = 6e-13
Identities = 64/497 (12%), Positives = 150/497 (30%), Gaps = 96/497 (19%)
Query: 1359 CVEPLVSLLVTEFSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHE 1417
+ ++++L + + L L ++++ V + LVGLL +H
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108
Query: 1418 AISRALVKL-GKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAK 1476
AL + K+ + + +++ +L +A D +L +
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD------MDLTEV--------- 153
Query: 1477 GPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL 1536
+ L+ L + + AL L + + P +
Sbjct: 154 ------ITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC------KPR 201
Query: 1537 DSPAPAVQQLAAELLSHLL--LEEQLQKDPVTQQVIGPLIRVLGSGIHI------LQQRA 1588
+V A L ++ E +K ++ LI ++ + I L +
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261
Query: 1589 VKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLE 1648
V L +++ EI + E + + + P +E +
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYEL--------------LFQP 307
Query: 1649 VPVAVLVRLLRSGS-EGTVIGSLNALLVLESDDGTSAE----AMAESGAIEALLELLRSH 1703
V + + LL+ + S A+ L + T A+ + A+ A+ +LL +
Sbjct: 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367
Query: 1704 QCE--ETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLF 1761
+ A+ L L + + +E L+ A+ +L
Sbjct: 368 HERVVKAASGALRNLAVDARNKE--------------------------LIGKHAIPNL- 400
Query: 1762 QNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQV 1821
V +E+ + + + ++ + + + E G++
Sbjct: 401 -----------VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEK 449
Query: 1822 VLDLIGSSDPETSVQAA 1838
++ + S + A
Sbjct: 450 LVLINKSGNRSEKEVRA 466
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 70.4 bits (171), Expect = 4e-12
Identities = 81/530 (15%), Positives = 156/530 (29%), Gaps = 58/530 (10%)
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+P + +L A + AA + L C + V L+ LL +V
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHL-CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVH 107
Query: 1109 D-----LLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGA 1163
L ++S R +D ++ + +PALV LL+ D
Sbjct: 108 LGACGALKNIS----------------FGRDQDNKIAIKNCDGVPALVRLLRKARD-MDL 150
Query: 1164 PFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEI 1223
+ G L L+ S K+ +V+ L ALT + + E D +
Sbjct: 151 TEVITGTLWNLSS-HDSIKMEIVDHA-LHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208
Query: 1224 RRHESAFAAVSQLVAVLRLGGRGARYSAAKALESL------------FSADHIRNAESAR 1271
+ A + V+ R R +++L + + N
Sbjct: 209 LTN---TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265
Query: 1272 QAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM 1331
+ + V ER Q AA + + + V + +L + +
Sbjct: 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELL--FQPEVVRIYISLLKESKTP 323
Query: 1332 ELKGDAAEL-----CGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV 1386
+ +A G IRS + + + + LL E + AL L
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383
Query: 1387 DDEQLAELVAAHGAVIPLVGLLYGRNYMLHE--------AISRALVKLGKDRPSCKLEMV 1438
D + EL+ A+ LV L G +I + ++ + ++
Sbjct: 384 VDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR 442
Query: 1439 KAGVIESVLDILH--EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1496
+ IE ++ I + A A +L+ + + K + F + +
Sbjct: 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNAS 502
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQL 1546
HS + +++ Q + + S
Sbjct: 503 RSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSNTKSLDNNYSTP 552
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 4e-11
Identities = 59/516 (11%), Positives = 151/516 (29%), Gaps = 65/516 (12%)
Query: 569 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628
+ L + + L +L S+ R+ + +I +L + ++ +A+
Sbjct: 17 YWAPLAQHERGSLASLDSLRKGGPPPPNWRQP-----ELPEVIAMLGFRLDAVKSNAAAY 71
Query: 629 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688
L + ++ +K + ++ LLD + + + A L I ++ ++A
Sbjct: 72 LQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN 131
Query: 689 RDALSPLV-VLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISG 747
D + LV +L + +++ E T L NL + + + + V+ +
Sbjct: 132 CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWE 191
Query: 748 KTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRS 807
+ R + + C+ E+ +DAL + ++
Sbjct: 192 REPNEDCKPRHIEWESVLTNTAGCLRNV-----SSERSEARRKLRECDGLVDALIFIVQA 246
Query: 808 GGASGH-----VKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLG 862
V+ +L + + + A + R +
Sbjct: 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306
Query: 863 DEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQS 922
EV + + P + +A I + + + +
Sbjct: 307 PEV------VRIYISLLKESKTPAILEA-SAGAIQNLCAGRWTYGRYIRSALRQEKALSA 359
Query: 923 LVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVL 982
+ +L+ ++ A L L
Sbjct: 360 IADLLTNEHERVVKA-------------------------------------ASGALRNL 382
Query: 983 ACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIR 1042
A ++ + A+ L + + ++ ED+ I I + ++ ++ + +
Sbjct: 383 AVDARNKEL--IGKHAIPNLVKNLPGGQQN-SSWNFSEDTVISILNTINEVIAENLEAAK 439
Query: 1043 AHATMKAIPILANLLKSEESANRYFAAQAVASLVCN 1078
+ I L + KS + + +A A ++
Sbjct: 440 KLRETQGIEKLVLINKSGNRSEK--EVRAAALVLQT 473
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 5e-06
Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 17 QLRQSSSSVQEKEYS---LRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQ 73
L + S + E S ++ L T + +A+ + LL + V
Sbjct: 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374
Query: 74 AATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQI-----AAAKTIYAVSQGGAK 128
A+ L +L + + +++ IP L+ L + +++ A+
Sbjct: 375 ASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433
Query: 129 DYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 175
+ +K + L K+G +S V L+ + E
Sbjct: 434 NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRA-AALVLQTIWGYKE 479
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-29
Identities = 45/246 (18%), Positives = 103/246 (41%), Gaps = 11/246 (4%)
Query: 396 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSS 455
+ + + + Q R ++ ++ +A+ + L+ LL +
Sbjct: 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS 515
EQ + ++ L +++ ++ A+ AG +P LVQ+L S + + +++ L N+ +
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Query: 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL-IHKSDTAT-------ISQLTA 567
+ V A A+PAL+ LL + + + A L+++ ++ + L
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 568 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSAS 627
LL+S + L AL ++ S + ++ A+E + ++ S E+ Q ++
Sbjct: 188 LLSSPNEQILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244
Query: 628 ALAGIF 633
AL +
Sbjct: 245 ALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 50/257 (19%), Positives = 102/257 (39%), Gaps = 17/257 (6%)
Query: 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE-NELRVKVLLGGCIPPLLGLLKSSSAE 110
H +P + L S + ++ A + + NE V+ G +P L+ LL S + +
Sbjct: 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 111 GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170
A + ++ GG + + G +P L + L + + ++ AL N+
Sbjct: 70 ILQEALWALSNIASGGNEQ---IQAVIDAGALPALVQLLSSP--NEQILQE-ALWALSNI 123
Query: 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATK 230
++ A + AG + LV+LL+ + L+ + V+ A A
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183
Query: 231 QLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290
L++LL S NE + EA AL +++ + ++ + + + + +Q
Sbjct: 184 ALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ---------LQSH 233
Query: 291 YAQALQENAMCALANIS 307
+ +Q+ A AL +
Sbjct: 234 ENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 15/249 (6%)
Query: 15 IEQLRQ--SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKI 72
+ Q+ Q +S +QE+ + R+ +++ AV + A+P LV LL S + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQ 72
Query: 73 QAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA--KD 129
+A L ++ E V+ G +P L+ LL S + + A + ++ GG
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDI 189
V G +P L + L + + ++ AL N+++ A + AG +
Sbjct: 133 AVID-----AGALPALVQLLSSP--NEQILQEA-LWALSNIASGGNEQIQAVIDAGALPA 184
Query: 190 LVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 249
LV+LL+ + L+ + V A A ++L +L NE ++ EA
Sbjct: 185 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQKEAQ 243
Query: 250 GALKSLSDH 258
AL+ L H
Sbjct: 244 EALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 47/285 (16%), Positives = 113/285 (39%), Gaps = 49/285 (17%)
Query: 231 QLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290
Q+ + L S + + A + + + + + +PA++ +P+++
Sbjct: 16 QMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ----- 69
Query: 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAES 350
+ + A+ AL+NI+ G + Q GAL
Sbjct: 70 ----ILQEALWALSNIASGGNEQ--------------IQAVIDAGAL------------- 98
Query: 351 TKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLI 409
P +V+ L++ + + + + AL+++ G + ++ A LV L+
Sbjct: 99 -----PALVQ--LLSSPNEQ----ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 469
+ ++ +E + AL + + +A+ + L+ LL +EQ + ++ L +
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207
Query: 470 SNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514
++ ++ K A+ AG + L Q+ + K ++++ L L +H
Sbjct: 208 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 9e-22
Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 12/247 (4%)
Query: 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG 538
+P + Q L S + + + + + + V A A+PAL+ LL +
Sbjct: 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 539 SANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPESKVYVLDALKSMLSV 590
+ + A L+++ + + L LL+S + L AL ++ S
Sbjct: 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126
Query: 591 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW 650
+ + A+ ++++LSS E+ ++ AL+ I + ++ I L
Sbjct: 127 ---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183
Query: 651 SVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 710
++++LL +E IL EA L+ I E ++ A AL L L ++ ++A
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQSHENEKIQKEA 242
Query: 711 TCALANL 717
AL L
Sbjct: 243 QEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 7/243 (2%)
Query: 1146 AIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA 1205
+P + L D A Q+ D +++AGAL AL + LS +
Sbjct: 13 ELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESL-FSADHI 1264
+EA L I E + A+ LV +L A AL ++ +
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 1265 RNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRI 1324
A A+ LV++L++ E+ A+ AL + S + AV ++ A+ L ++
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV--IDAGALPALVQL 188
Query: 1325 LSSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALD 1383
LSS + ++ +A L + G + V A +E L L E Q AL+
Sbjct: 189 LSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
Query: 1384 KLV 1386
KL
Sbjct: 248 KLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 9/245 (3%)
Query: 1231 AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQA--VQPLVEILNTGLERE 1288
+ + Q+ L + SA + + +D ++ A + LV++L++ E+
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQI-LSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 1289 QHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLFGN 1347
A+ AL + S + AV ++ A+ L ++LSS + ++ +A L + G
Sbjct: 71 LQEALWALSNIASGGNEQIQAV--IDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 127
Query: 1348 TRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVG 1406
V A + LV LL + + AL + + + V GA+ LV
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 1407 LLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL-HEAPDFLCSAFAELL 1465
LL N + + AL + K + +AG +E + + HE A L
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
Query: 1466 RILTN 1470
++ ++
Sbjct: 248 KLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-16
Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 7/241 (2%)
Query: 1317 AVDVLCRILSSNCSMELKGDAA-ELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQ 1375
+ + + L+S+ M+ + A + +L V A + LV LL +
Sbjct: 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 1376 HSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434
+ AL + + + V GA+ LV LL N + + AL +
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 1435 LEMVKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTR 1493
++ AG + +++ +L L A L I + + A + L LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 1494 SEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1553
AL L NI + ++ A+E L L +Q+ A E L
Sbjct: 192 PN--EQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 1554 L 1554
L
Sbjct: 249 L 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 8/201 (3%)
Query: 1651 VAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH---QCEE 1707
+ LV+LL S +E + +L AL + S +A+ ++GA+ AL++LL S +E
Sbjct: 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115
Query: 1708 TAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLA 1767
L + + ++ A+ L Q L P Q Q A AL ++
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGGNEQ 172
Query: 1768 RSADAVS-ACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLI 1826
A + A ALV +L P E++ A+ AL N+ K+AV EAG ++ + L
Sbjct: 173 IQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231
Query: 1827 GSSDPETSVQAAMFVKLLFSN 1847
+ + +A ++ L S+
Sbjct: 232 SHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 6/250 (2%)
Query: 1180 SNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAV 1239
+ L +T+ L+ A IL E + A+ LV +
Sbjct: 3 GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62
Query: 1240 LRLGGRGARYSAAKALESLFSADHIRNAESARQ--AVQPLVEILNTGLEREQHAAIAALV 1297
L A AL ++ ++ ++ A+ LV++L++ E+ A+ AL
Sbjct: 63 LSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1298 RLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAA 1357
+ S + AV D A+ L ++LSS L+ L + G V A
Sbjct: 122 NIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179
Query: 1358 RCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRNYMLH 1416
+ LV LL + + AL + + + V GA+ L L N +
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 239
Query: 1417 EAISRALVKL 1426
+ AL KL
Sbjct: 240 KEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 49/268 (18%), Positives = 101/268 (37%), Gaps = 49/268 (18%)
Query: 164 TGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRV 223
T + + A + AG + LV+LL+ + L+ + V
Sbjct: 33 TRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92
Query: 224 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS 283
+ A A L++LL S NE + EA AL +++ + + + + +PA++ +P+
Sbjct: 93 IDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 284 KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343
++ + + A+ AL+NI+ G + I ++ A L AL L
Sbjct: 152 EQ---------ILQEALWALSNIASGGNEQIQAVID-----------AGALPALVQLLSS 191
Query: 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAK 402
+ + + + + AL+++ G ++ + A
Sbjct: 192 PNEQ---------------------------ILQEALWALSNIASGGNEQKQAVKEAGAL 224
Query: 403 RLLVGLITMATNEVQEELVRALLKLCNN 430
L L + ++Q+E AL KL ++
Sbjct: 225 EKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 19/254 (7%)
Query: 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECIL 664
+ M + L+S + Q + + I + ++ I L ++++LL +E IL
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 665 VEASRCLAAIFLSVRENREVAAVAR-DALSPLVVLAGSPVLEVAEQATCALANLILDSEV 723
EA L+ I + N ++ AV AL LV L SP ++ ++A AL+N+
Sbjct: 72 QEALWALSNI--ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 724 SEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARLL--HSRKIDYTITDCVNRAGTVLA 780
+A+ + LPA ++L A A++ + + +I I AG + A
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-----DAGALPA 184
Query: 781 LVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATP 840
LV L S + + EAL AL+ + ASG + V ++ + +
Sbjct: 185 LVQLLSSPNEQILQ-EALWALSNI-----ASGGNEQKQAVKEA--GALEKLEQLQSHENE 236
Query: 841 LLQDKAIEILSRLC 854
+Q +A E L +L
Sbjct: 237 KIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 1651 VAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ET 1708
+ + + L S + + + SD +A+ ++GA+ AL++LL S + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 1709 AAR-LLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLA 1767
A L + + ++ A+ L Q L P Q Q A AL ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIASGG--N 128
Query: 1768 RSADAVSAC---RALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLD 1824
AV ALV +L P E++ A+ AL N+ +AV +AG + ++
Sbjct: 129 EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 1825 LIGSSDPETSVQAA 1838
L+ S + + +A
Sbjct: 188 LLSSPNEQILQEAL 201
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 56/289 (19%), Positives = 97/289 (33%), Gaps = 52/289 (17%)
Query: 1438 VKAGVIES-VLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1496
+ + + SA + +IL++ + A + L LL+
Sbjct: 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN- 67
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
AL L NI + ++ A+ L+ LL SP + Q A LS++
Sbjct: 68 -EQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125
Query: 1557 EEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGGVTEL 1612
Q V + L+++L S + Q A+ AL +IA + G
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA---- 181
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNA 1672
+ LV+LL S +E + +L A
Sbjct: 182 --------------------------------------LPALVQLLSSPNEQILQEALWA 203
Query: 1673 LLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVLLNN 1719
L + S +A+ E+GA+E L +L + + A LE L ++
Sbjct: 204 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 56/297 (18%), Positives = 105/297 (35%), Gaps = 59/297 (19%)
Query: 1683 SAEAMAESGAIEALLELLRS---HQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
S + + + L S + + ++L + + ++ A+ L Q L
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 1740 LDPQTQAQQ--ARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1797
P Q Q L+ +A G + A A+ ALV +L P E++ A+
Sbjct: 64 SSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALP---ALVQLLSS-PNEQILQEALW 118
Query: 1798 ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSE 1857
AL N+ +AV +AG + ++ L+ S + + +A + + S +E
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------NE 171
Query: 1858 TVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEA 1917
++A+ A A +P LV L + +E
Sbjct: 172 QIQAVIDA-------------------GA-----------------LPALVQLLSSPNEQ 195
Query: 1918 TQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLL 1974
+ AL AL + + Q+V A A+ L+ L + Q++A+ L
Sbjct: 196 ILQEALWALSNI------ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 54/235 (22%), Positives = 85/235 (36%), Gaps = 17/235 (7%)
Query: 1027 CALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLS 1086
IL + I+A A+P L LL S A A++++ G+
Sbjct: 33 TRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA- 91
Query: 1087 VANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRV-EDIRVGATSRK 1145
V ++GA L+ LL + + +E AL + +
Sbjct: 92 VIDAGALPALVQLLSSPNEQIL------QEALW-------ALSNIASGGNEQIQAVIDAG 138
Query: 1146 AIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA 1205
A+PALV LL AL L +A +++AGAL AL + LS +
Sbjct: 139 ALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFS 1260
+EA L I E ++ A+ +L + + A +ALE L S
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 30/245 (12%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICAL--LLA 1032
A + + +++AGA+ L +S + I AL L
Sbjct: 32 ATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-----------NEQILQEALWALSN 80
Query: 1033 ILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGA 1092
I + I+A A+P L LL S A A++++ G + +V ++GA
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGA 139
Query: 1093 AGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGA-TSRKAIPALV 1151
L+ LL + + +E AL + + ++ A A+PALV
Sbjct: 140 LPALVQLLSSPNEQIL------QEALW-------ALSNIASGGNEQIQAVIDAGALPALV 186
Query: 1152 DLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAAT 1211
LL ++ AL L +A K + EAGALE L + S + +EA
Sbjct: 187 QLLSSPNEQILQE--ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244
Query: 1212 DLLGI 1216
L +
Sbjct: 245 ALEKL 249
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-28
Identities = 69/424 (16%), Positives = 155/424 (36%), Gaps = 26/424 (6%)
Query: 345 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQ-------ERTIEA------LASLYGNPL 391
D + + +Q +Q + LP + Q + + A + S P
Sbjct: 63 DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP 122
Query: 392 LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451
+ + ++ RL+ + +Q E AL + + + + + + + L I LL
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182
Query: 452 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 511
S + +E ++ L ++ ++ D + + + P++ + S + L NL
Sbjct: 183 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242
Query: 512 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS--------DTATIS 563
C + + A+P L L+ + A +++L D
Sbjct: 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302
Query: 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQA 623
+L LL+ + + L A+ ++ V+ +D+ + + + +LSS KE +
Sbjct: 303 RLVELLSHESTLVQTPALRAVGNI---VTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359
Query: 624 KSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 683
++ ++ I + ++ I + ++KLL+V EA ++ + +
Sbjct: 360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419
Query: 684 --VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLC 741
V++ + PL L + E AL N++ E ++A I A +
Sbjct: 420 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479
Query: 742 EGTI 745
G +
Sbjct: 480 AGGM 483
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 8e-28
Identities = 66/452 (14%), Positives = 147/452 (32%), Gaps = 38/452 (8%)
Query: 157 NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM-EE 215
+ + S+ + + + + + L Q ++ E
Sbjct: 59 IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118
Query: 216 DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAM 275
V+ A +L++ + ++ EAA AL +++ + + ++ +P
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178
Query: 276 INATIAPSKEFMQGEYAQALQENAMCALANISGG---------LSNVISSLGQSLESCSS 326
I S E ++E A+ AL N++G N + + S
Sbjct: 179 IQLLYTGSVE---------VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP 229
Query: 327 PAQ--VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA 384
TL L KP V + + + E ++A
Sbjct: 230 SLIRTATWTLSNLCR----------GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 385 SL----YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440
++ G + + + LV L++ + VQ +RA+ + + +
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339
Query: 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500
+ L LL E ++ + + ++ N + A+ A IPPLV++LE K
Sbjct: 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399
Query: 501 KEDSASILRNLC---NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557
K+++ + N DI + S + L LL+ E+ L +++
Sbjct: 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459
Query: 558 DTATISQLTALLTSDLPESKVYVLDALKSMLS 589
+ ++ + + K ++ + +
Sbjct: 460 EADKEARGLNINENADFIEKAGGMEKIFNCQQ 491
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 68/364 (18%), Positives = 136/364 (37%), Gaps = 32/364 (8%)
Query: 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAV 70
V + +E +R++ + + E + L + V AVP+ + LL +GS+ V
Sbjct: 132 VPRLVEFMRENQPEMLQLE-AAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGSVEV 189
Query: 71 KIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKD 129
K QA LG++ ++ + R VL + P+LGL S+ A T+ + +G
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDI 189
+P L + + + + + A+ LS + A +
Sbjct: 250 ---PDWSVVSQALPTLAKLIYSM--DTETLVDACW-AISYLSDGPQEAIQAVIDVRIPKR 303
Query: 190 LVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 249
LV+LL+ + Q + ++ + V+ A L LL S E +++ EA
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKKEAC 362
Query: 250 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG 309
+ +++ + + + +N IP ++ + ++ A A++N S G
Sbjct: 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK---------TKKEACWAISNASSG 413
Query: 310 LSN------------VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPL 357
I L LE + + TL AL + L + ++ E+ +
Sbjct: 414 GLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINE 472
Query: 358 IVEQ 361
+
Sbjct: 473 NADF 476
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 4e-22
Identities = 77/483 (15%), Positives = 165/483 (34%), Gaps = 72/483 (14%)
Query: 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSL--CKENELRVKVLLGGCIPPLLGLLKSSS-A 109
Q +P + L S + ++ A + + V+ G +P L+ ++ +
Sbjct: 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145
Query: 110 EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 169
Q+ AA + ++ G +K+ VP+ + L G V AL N
Sbjct: 146 MLQLEAAWALTNIASG---TSAQTKVVVDADAVPLFIQLLYTGSVE---VKEQAIWALGN 199
Query: 170 LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADAT 229
++ + + +Q ++ ++ L + S + L+ + + + A
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259
Query: 230 KQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQG 289
L KL+ S + +A A+ LSD ++A + + ++ +
Sbjct: 260 PTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE---------LLS 309
Query: 290 EYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE 349
+ +Q A+ A+ NI G QV G L + ++ S E
Sbjct: 310 HESTLVQTPALRAVGNIVTG--------------NDLQTQVVINAGVLPALRLLLSSPKE 355
Query: 350 STKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLY-GNPLLSIKLENSEAKRLLVGL 408
+ +++ ++++ GN + ++ LV L
Sbjct: 356 N------------------------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391
Query: 409 ITMATNEVQEELVRALLKLC---NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSV-A 464
+ +A + ++E A+ + R L + I+ L LL ++ + E ++ A
Sbjct: 392 LEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451
Query: 465 LLCLLSNENDDSKW----------AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514
L +L D + I AGG+ + ++ + K E + I+
Sbjct: 452 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511
Query: 515 SED 517
ED
Sbjct: 512 EED 514
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 2e-21
Identities = 82/455 (18%), Positives = 157/455 (34%), Gaps = 28/455 (6%)
Query: 1541 PAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWP 1600
P ++ + Q QQ + + + L S Q A I
Sbjct: 60 PPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREH 119
Query: 1601 NE----IAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEV----PVA 1652
+ + G V L + + + P L AA L++I +S V V
Sbjct: 120 RPPIDVVIQAGVVPRLVEFMRENQP---EMLQLEAAWALTNIASGTSAQTKVVVDADAVP 176
Query: 1653 VLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAA 1710
+ ++LL +GS ++ AL + D + + + A+E +L L S++ TA
Sbjct: 177 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236
Query: 1711 RLLEVLLNNGKIRESKATKSAILPLSQYLL---DPQTQAQQARLLATLALGDLFQNEGLA 1767
L L K + + S LP L+ D +T ++ L+ G E +
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP---QEAIQ 293
Query: 1768 RSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIG 1827
D + LV +L + ++ A+ A+ N+V + + V AG + + L+
Sbjct: 294 AVIDV-RIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351
Query: 1828 SSDPETSVQAAMFVKLLFSNHT--IQEYASSETVRAITAAIEKELWATGTVNEEYLKALN 1885
S +A + + + +T IQ + + + +E + T + +
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411
Query: 1886 ALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSAC-----PAEV 1940
+ P + + I L L+ E LDAL + + A
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471
Query: 1941 SKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQ 1975
A + A + + Q+ + EKA +++
Sbjct: 472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 7e-21
Identities = 70/471 (14%), Positives = 156/471 (33%), Gaps = 65/471 (13%)
Query: 1265 RNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRI 1324
+ +Q + + + LN+ +EQ +A ++LS + V ++ V L
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVV-IQAGVVPRLVEF 138
Query: 1325 LSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK 1384
+ N L+ + AA + + S
Sbjct: 139 MRENQPEMLQ-------------------LEAAWALTNIAS------------------- 160
Query: 1385 LVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444
++V AV + LLY + + E AL + D + +++ +E
Sbjct: 161 --GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 218
Query: 1445 SVLDIL-HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHS 1503
+L + P + +A L + ++ + L L+ + +
Sbjct: 219 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVD 276
Query: 1504 ALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKD 1563
A + + + PQ + + + L+ LL + VQ A + +++ LQ
Sbjct: 277 ACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 1564 PVTQ-QVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGGVTELSKIILQA 1619
V V+ L +L S +++ A + +I + + L K++ A
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 1620 DPSL-PHALW--ESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVL 1676
+ A W +A+S + + L LL + +L+AL +
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455
Query: 1677 -----------ESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLE 1714
+ +A+ + ++G +E + ++ + E A +++E
Sbjct: 456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 8e-21
Identities = 71/439 (16%), Positives = 153/439 (34%), Gaps = 32/439 (7%)
Query: 1434 KLEMVKAGVIESVLDILH-EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492
+ + + L+ + SA + +IL+ V P +
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 1493 RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1552
R Q A L NI + + A+ I LL + + V++ A L
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTK-VVVDADAVPLFIQLLYTGSVEVKEQAIWALG 198
Query: 1553 HLLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIAL---TWPNEIAKEGG 1608
++ + +D V Q + P++ + S L + A L ++ P+
Sbjct: 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258
Query: 1609 VTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEV----PVAVLVRLLRSGSEG 1664
+ L+K+I D A +S + E V LV LL S
Sbjct: 259 LPTLAKLIYSMDTETL----VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 314
Query: 1665 TVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVLLNNGKI 1722
+L A+ + + + + + +G + AL LL S + + A + +
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1723 RESKATKSAILPLSQYLL---DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRAL 1779
+ + ++P LL + +T+ + ++ + G L + + + + L
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ-GCIKPL 433
Query: 1780 VNVLEEQPTEEMKVVAICALQNLVMYSRSNKRA-----------VAEAGGVQVVLDLIGS 1828
++LE + V + AL+N++ ++K A + +AGG++ + + +
Sbjct: 434 CDLLEI-ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 492
Query: 1829 SDPETSVQAAMFVKLLFSN 1847
+ + +A ++ F
Sbjct: 493 ENDKIYEKAYKIIETYFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 3e-19
Identities = 62/392 (15%), Positives = 119/392 (30%), Gaps = 22/392 (5%)
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+P + L S++ + A ++ R + V +G L+ + ++
Sbjct: 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM- 146
Query: 1109 DLLDLSEEFALVRYPDQVALERLFRV-EDIRVGATSRKAIPALVDLLKPIPDRPGAPFLA 1167
++ AL + A+P + LL A
Sbjct: 147 -----------LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVK-EQA 193
Query: 1168 LGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHE 1227
+ L +A D + +++ A+E + + A L +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 1228 SAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQ-AVQPLVEILNTGLE 1286
A+ L ++ A A+ L + LVE+L+
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 1287 REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346
Q A+ A+ +++ N + V + + L +LSS K + + G
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVV--INAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV----DDEQLAELVAAHGAVI 1402
NT V A + PLV LL + A+ + + + G +
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 1403 PLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434
PL LL + + E AL + K + K
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADK 463
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 1e-15
Identities = 69/442 (15%), Positives = 143/442 (32%), Gaps = 39/442 (8%)
Query: 1006 ISDSLSQFTQMDYKEDSSIWICAL--LLAIL-FQDRDIIRAHATMKAIPILANLLKSEES 1062
+ L Q TQ +D + A IL + R I +P L ++ +
Sbjct: 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP 144
Query: 1063 ANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRY 1122
A + + +G+ V ++ A I LL +V+ E A+
Sbjct: 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK-------EQAI--- 194
Query: 1123 PDQVALERLFRV-EDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSN 1181
AL + D R A+ ++ L ++P A L L +
Sbjct: 195 ---WALGNVAGDSTDYRDYVLQCNAMEPILGLFN--SNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 1182 KIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLR 1241
V + AL L K + + +A + + E + +LV +L
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 1242 LGGRGARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLL 1300
+ A +A+ ++ + D + L +L++ E + A + +
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369
Query: 1301 SENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAE----LCGVLFGNTRIRSTVAA 1356
+ N + AV ++ N + L ++L + K +A I + +
Sbjct: 370 AGNTEQIQAV--IDANLIPPLVKLLEV-AEYKTKKEACWAISNASSGGLQRPDIIRYLVS 426
Query: 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLV------------DDEQLAELVAAHGAVIPL 1404
C++PL LL + + AL+ ++ + + A+ + G + +
Sbjct: 427 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 486
Query: 1405 VGLLYGRNYMLHEAISRALVKL 1426
N ++E + +
Sbjct: 487 FNCQQNENDKIYEKAYKIIETY 508
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 1e-12
Identities = 62/340 (18%), Positives = 114/340 (33%), Gaps = 30/340 (8%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
A W L +A V+++A A+ + + ++ KE +IW +
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-----SVEVKE-QAIWALGNVAGDS 204
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
RD + A+ + L S + + A +++L C G + S A
Sbjct: 205 TDYRDYVLQCN---AMEPILGLFNSNKPSLIRTATWTLSNL-CRGKKPQPDWSVVSQALP 260
Query: 1095 GLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSR-KAIPALVDL 1153
L L+ D + + A+ L + A + LV+L
Sbjct: 261 TLAKLIYSMDTETL------VDACW-------AISYLSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 1154 LKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
L P AL + + V++ AG L AL LS ++ +EA +
Sbjct: 308 LSHESTLVQTP--ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 1214 LGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADH----IRNAES 1269
I + E + + LV +L + + A A+ + S I
Sbjct: 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425
Query: 1270 ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALA 1309
++ ++PL ++L R + AL +L + A
Sbjct: 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 465
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 4e-12
Identities = 68/437 (15%), Positives = 135/437 (30%), Gaps = 70/437 (16%)
Query: 677 SVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILP 735
SV +++ + + L + S ++ AT ++ + + + ++P
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 736 ATRVL--CEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVA 793
+ AA A+ + T V A V + L + S V
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIA---SGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 794 TSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 853
+A+ AL ++ VL ++ PI+ P L A LS L
Sbjct: 191 -EQAIWALGNVAGDS-----TDYRDYVLQCN--AMEPILGLFNSNKPSLIRTATWTLSNL 242
Query: 854 CRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHS 913
CR + V S + ++A ++I + + + + + + I ++
Sbjct: 243 CRGKKPQPDWSV--VSQALPTLA-KLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-- 297
Query: 914 NSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGEN 973
+ + LV +LS
Sbjct: 298 ---VRIPKRLVELLSHESTLVQTP------------------------------------ 318
Query: 974 LAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAI 1033
A+ + + ++ V++ AG + L +S KE+ C + I
Sbjct: 319 -ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP---------KENIKKEACWTISNI 368
Query: 1034 LFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGS--RGTLLSVANSG 1091
+ + I+A IP L LL+ E + A A+++ G + + + G
Sbjct: 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 1092 AAGGLISLLGCADADVQ 1108
L LL AD +
Sbjct: 429 CIKPLCDLLEIADNRII 445
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 6e-11
Identities = 51/318 (16%), Positives = 103/318 (32%), Gaps = 21/318 (6%)
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH---QCEETAARLLEVLLNNGKIRE 1724
G+ + S + + + L S + + ++L +
Sbjct: 64 GADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPI 123
Query: 1725 SKATKSAILPLSQYLL----DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALV 1780
++ ++P + Q + A L +A G Q + + + A +
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD----AVPLFI 179
Query: 1781 NVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMF 1840
+L + E+K AI AL N+ S + V + ++ +L L S+ P A
Sbjct: 180 QLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238
Query: 1841 VKLLFSNHTIQEYASSETVRAITAAIEKELWATGT-VNEEYLKALNALFNNFPRLRATEP 1899
+ L Q V + K +++ T + A++ L +
Sbjct: 239 LSNLCRGKKPQ--PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
Query: 1900 ATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLI 1959
LV L S Q AL A+ + + Q V A +P L+ L+
Sbjct: 297 DVRIPKRLVELLSHESTLVQTPALRAVGNI------VTGNDLQTQVVINAGVLPALRLLL 350
Query: 1960 QSGPPRFQEKAEFLLQCL 1977
S +++A + + +
Sbjct: 351 SSPKENIKKEACWTISNI 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-10
Identities = 46/314 (14%), Positives = 91/314 (28%), Gaps = 29/314 (9%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
AIW L +A + +++ AM+ + + + + L +
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR---------TATWTLSNLC 243
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
+ +A+P LA L+ S ++ A A++ L + +
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPK 302
Query: 1095 GLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVED-IRVGATSRKAIPALVDL 1153
L+ LL VQ P A+ + D + +PAL L
Sbjct: 303 RLVELLSHESTLVQ-------------TPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Query: 1154 LKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
L + A + + +++A + L K L + +EA +
Sbjct: 350 LS--SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407
Query: 1214 LGILFSS---AEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA 1270
+I R+ + + L +L + ALE++
Sbjct: 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG 467
Query: 1271 RQAVQPLVEILNTG 1284
+ I G
Sbjct: 468 LNINENADFIEKAG 481
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 8e-10
Identities = 51/358 (14%), Positives = 115/358 (32%), Gaps = 30/358 (8%)
Query: 975 AIWLLCVLACHDEKCKI-VIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAI 1033
A + + + I V+++AG + L + + ++ + Q++ + W + +
Sbjct: 107 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE-----AAWALTNIASG 161
Query: 1034 LFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAA 1093
++ A+P+ LL + + A A+ ++ + + V A
Sbjct: 162 TSAQTKVV---VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-VLQCNAM 217
Query: 1094 GGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFR-VEDIRVGATSRKAIPALVD 1152
++ L + A L L R + + +A+P L
Sbjct: 218 EPILGLFNSNKPSLI-------RTAT------WTLSNLCRGKKPQPDWSVVSQALPTLAK 264
Query: 1153 LLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATD 1212
L+ D A + L+ +++ + L + LS A
Sbjct: 265 LIYS-MD-TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322
Query: 1213 LLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQ 1272
+ I+ + + + L +L + A + S +A + ++
Sbjct: 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI-SNITAGNTEQIQAVID 381
Query: 1273 A--VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVAD-VEMNAVDVLCRILSS 1327
A + PLV++L + + A A+ S R + V + LC +L
Sbjct: 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 7e-28
Identities = 59/420 (14%), Positives = 135/420 (32%), Gaps = 60/420 (14%)
Query: 184 AGGIDILVKLLTLGQSSTQ---AHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
+++++ Q L E + + + + ++ L
Sbjct: 19 GVITSDMIEMIFSKSPEQQLSATQKFRKLLSK-EPNPPIDEVISTPGVVARFVEFLKRKE 77
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+++ E+A L +++ R + + +P I + ++ +QE A+
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED---------VQEQAV 128
Query: 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360
AL NI+G + L
Sbjct: 129 WALGNIAGD--------------STMCRDYVLDCNIL----------------------- 151
Query: 361 QTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEE 419
L+ F + + + AL++L G + S +L L+ ++ +V +
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211
Query: 420 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479
AL L + +A+ + L+ LL + + ++ + + +D
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
I + L+ +L S K+++ + N+ + V A+ PAL+ +L+
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331
Query: 540 ANGKEIAAKTLNHLIHKSDTA---------TISQLTALLTSDLPESKVYVLDALKSMLSV 590
++ AA + + I L LLT + L+ L+++L +
Sbjct: 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 4e-27
Identities = 75/395 (18%), Positives = 146/395 (36%), Gaps = 18/395 (4%)
Query: 1259 FSADHIRNAESARQA--VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMN 1316
F I N E A ++E++ + +Q +A +LLS+ P+ +
Sbjct: 5 FHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 64
Query: 1317 AVDVLCRILSSNCSMELKGDAAELCGVLF-GNTRIRSTVAAARCVEPLVSLLVTEFSPAQ 1375
V L + L+ ++A + + GN+ V A V + LL +EF Q
Sbjct: 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQ 124
Query: 1376 HSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYM-LHEAISRALVKLGKDRPSC 1433
V AL + D + V + PL+ L +N + + AL L + +
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184
Query: 1434 KLEMVKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492
+ + + +L + D L A L + + A V L LL
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244
Query: 1493 RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1552
++ AL+ + NI+ + + + A++ L+ LL SP ++++ A +S
Sbjct: 245 HND--YKVVSPALRAVGNIVTGDDIQTQ-VILNCSALQSLLHLLSSPKESIKKEACWTIS 301
Query: 1553 HLLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE----IAKEG 1607
++ + Q V + LI +L + ++ A A+ + E + + G
Sbjct: 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361
Query: 1608 GVTELSKIILQADPSLPHALWESAASVLSSILQFS 1642
+ L ++ D + A + L +IL+
Sbjct: 362 CIKPLCDLLTVMDSKIVQV----ALNGLENILRLG 392
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-27
Identities = 76/481 (15%), Positives = 157/481 (32%), Gaps = 61/481 (12%)
Query: 84 ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVP 143
+ G ++ ++ S S E Q++A + + + I ST GVV
Sbjct: 9 QINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-STPGVVA 67
Query: 144 VLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQA 203
E LK + L N+++ +QAG + I ++LL+ Q
Sbjct: 68 RFVEFLKRK--ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125
Query: 204 HVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263
+ L + + VL + LL+L N ++ A AL +L
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185
Query: 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLES 323
S + + + + +A AL+ +S G ++ I ++
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTD---------VLADACWALSYLSDGPNDKIQAVID---- 232
Query: 324 CSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEAL 383
A L L +D +V L R + +
Sbjct: 233 -------AGVCRRLVELL----------MHNDYKVVSPAL--------------RAVGNI 261
Query: 384 ASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREG 443
+ G+ + + + N A + L+ L++ +++E + + + + +
Sbjct: 262 VT--GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 444 IQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502
LIS+L ++E + A+ S + + + G I PL +L +K +
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 503 DSASILRNLCNHSEDIRAC-----------VESADAVPALLWLLKNGSANGKEIAAKTLN 551
+ + L N+ E +E A + + +L + + + A +
Sbjct: 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439
Query: 552 H 552
H
Sbjct: 440 H 440
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 72/363 (19%), Positives = 126/363 (34%), Gaps = 31/363 (8%)
Query: 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAV 70
VA+ +E L + + + S L + V AVP+ + LL S V
Sbjct: 66 VARFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG-AVPIFIELLSSEFEDV 123
Query: 71 KIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQGGAK 128
+ QA LG++ ++ R VL +PPLL L + A + + +G +
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 129 DYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGID 188
+ + VL L +V+ + AL LS A + AG
Sbjct: 184 P---PEFAKVSPCLNVLSWLLFVS--DTDVLADAC-WALSYLSDGPNDKIQAVIDAGVCR 237
Query: 189 ILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 248
LV+LL + + ++ D +L A + LL LL S E S++ EA
Sbjct: 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE-SIKKEA 296
Query: 249 AGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISG 308
+ +++ + + + +N PA+I+ ++ A A+ N +
Sbjct: 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFR---------TRKEAAWAITNATS 347
Query: 309 GLS----------NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 358
G S I L L + V L L + L + + +A+
Sbjct: 348 GGSAEQIKYLVELGCIKPLCDLL-TVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406
Query: 359 VEQ 361
Sbjct: 407 CAL 409
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 66/455 (14%), Positives = 146/455 (32%), Gaps = 60/455 (13%)
Query: 1288 EQHAAIAALVRLL-SENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346
+ ++ ++ S++P + +++A ++LS
Sbjct: 17 PGGVITSDMIEMIFSKSP-------EQQLSATQKFRKLLSKEP----------------- 52
Query: 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPA-QHSVVRALDKLV-DDEQLAELVAAHGAVIPL 1404
N I ++ V V L + + Q L + + +V GAV
Sbjct: 53 NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112
Query: 1405 VGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPD--FLCSAFA 1462
+ LL + E AL + D C+ ++ ++ +L + + +A
Sbjct: 113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172
Query: 1463 ELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYS 1522
L + + + + + L LL D A L + + P +
Sbjct: 173 ALSNLCRGKSPPPEFAKVSPCLNVLSWLL--FVSDTDVLADACWALSYLSDGPNDKIQAV 230
Query: 1523 LTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQ-VIGPLIRVLGSGI 1581
+ + L+ LL V A + +++ + +Q + + L+ +L S
Sbjct: 231 IDAG-VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK 289
Query: 1582 HILQQRAVKALVSIALTWPN---EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSI 1638
+++ A + +I + L I+ A+ + AA +++
Sbjct: 290 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR----KEAAWAITNA 345
Query: 1639 LQFSSEFYLEV-----PVAVLVRLLRSGSEGTVIGSLNALLVL-----------ESDDGT 1682
S ++ + L LL V +LN L + +
Sbjct: 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP 405
Query: 1683 SAEAMAESGAIEALLELLRSHQCEE---TAARLLE 1714
+ E+ ++ +E L+SH+ +E A L+E
Sbjct: 406 YCALIEEAYGLDK-IEFLQSHENQEIYQKAFDLIE 439
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 5e-21
Identities = 73/427 (17%), Positives = 148/427 (34%), Gaps = 38/427 (8%)
Query: 1440 AGVIES-VLDILHEAPDFLCSAFAELLRILTN--NAGIAKGPSAAKVVEPLFLLLTRSEF 1496
+ + I ++P+ SA + ++L+ N I + S VV L R E
Sbjct: 19 GVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKEN 78
Query: 1497 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
Q + VL NI + + A+ I LL S VQ+ A L ++
Sbjct: 79 -CTLQFESAWVLTNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136
Query: 1557 EEQLQKDPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAK----EGGVTE 1611
+ + +D V ++ PL+++ + R +S + + +
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 1612 LSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEV----PVAVLVRLLRSGSEGTVI 1667
LS ++ +D + A LS + ++ V LV LL V
Sbjct: 197 LSWLLFVSDTDVL----ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQ---CEETAARLLEVLLNNGKIRE 1724
+L A+ + + D + + A+++LL LL S + +E + + N +
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312
Query: 1725 SKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSA--CRALVNV 1782
+ + L L + + ++ A A+ + + V + L ++
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKE---AAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369
Query: 1783 LEEQPTEEMKVVAICALQNLVMYSRSNKRA-----------VAEAGGVQVVLDLIGSSDP 1831
L ++ VA+ L+N++ + + EA G+ + L +
Sbjct: 370 LTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQ 428
Query: 1832 ETSVQAA 1838
E +A
Sbjct: 429 EIYQKAF 435
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 9e-20
Identities = 71/473 (15%), Positives = 149/473 (31%), Gaps = 70/473 (14%)
Query: 55 AVPVLVSLLRSGSLAVKIQAATVLGSLC---KENELRVKVLLGGCIPPLLGLLKSSS-AE 110
++ ++ S S ++ A L + + G + + LK
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 111 GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170
Q +A + ++ G + + ++I G VP+ E L + + V AL N+
Sbjct: 81 LQFESAWVLTNIASG---NSLQTRIVIQAGAVPIFIELLSSEFED---VQEQAVWALGNI 134
Query: 171 STSTEGFWAATVQAGGIDILVKLLTLGQS-STQAHVCFLLACMMEEDVSVCSRVLAADAT 229
+ + + + L++L + + + + L+ + +
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194
Query: 230 KQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQG 289
L LL + V A+A AL LSD D + + + ++ + +
Sbjct: 195 NVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK---- 249
Query: 290 EYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAE 349
+ A+ A+ NI G QV AL S L + S
Sbjct: 250 -----VVSPALRAVGNIVTGDDIQT--------------QVILNCSALQSLLHLLSS--- 287
Query: 350 STKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI 409
I ++ TI + + GN + ++ L+ ++
Sbjct: 288 ----PKESIKKEAC--------------WTISNITA--GNRAQIQTVIDANIFPALISIL 327
Query: 410 TMATNEVQEELVRALLKLC-NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSV-ALLC 467
A ++E A+ + L I+ L LL + + + ++ L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
Query: 468 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIR 519
+L + A GI P ++E + + L +H +++I
Sbjct: 388 ILRLGEQE---AKRNGTGINPYCALIE------EAYGLDKIEFLQSHENQEIY 431
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 1e-18
Identities = 56/311 (18%), Positives = 119/311 (38%), Gaps = 24/311 (7%)
Query: 15 IEQLRQSSSSVQEK-EYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL-RSGSLAVKI 72
IE + S Q R+LL V S V V L R + ++
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKLLS--KEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 73 QAATVLGSLCKENELRVKVLL-GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA--KD 129
++A VL ++ N L+ ++++ G +P + LL S + Q A + ++ +D
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDI 189
YV ++P L + + N AL NL + +++
Sbjct: 144 YVLD-----CNILPPLLQLFSKQ-NRLTMTRN-AVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 190 LVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 249
L LL + + A C+ L+ + + V+ A ++L++LL + V + A
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPAL 255
Query: 250 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG 309
A+ ++ + I + + ++++ +P + +++ A ++NI+ G
Sbjct: 256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKES---------IKKEACWTISNITAG 306
Query: 310 LSNVISSLGQS 320
I ++ +
Sbjct: 307 NRAQIQTVIDA 317
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 7e-18
Identities = 63/455 (13%), Positives = 137/455 (30%), Gaps = 54/455 (11%)
Query: 470 SNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED--IRACVESADA 527
++ +++++ S S + + + R L + + I + +
Sbjct: 6 HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65
Query: 528 VPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKS 586
V + LK + +A L + S V+ A
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVL----------------TNIASGNSLQTRIVIQA--- 106
Query: 587 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646
AV I++LSS E+ Q ++ AL I R+ +
Sbjct: 107 ------------------GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC 148
Query: 647 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 706
L +++L + + + + + A L+ L L +V
Sbjct: 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDV 208
Query: 707 AEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARLLHSRKID 765
A AL+ L +A+ + + +L + A A+ ++ D
Sbjct: 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG---D 265
Query: 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFP 825
T + + +L+ L S S+ EA ++ + +G+ V+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSSPKESIKK-EACWTISNI-----TAGNRAQIQTVIDA-- 317
Query: 826 KSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNP 885
++S + A + +A ++ A + GCI + +++ +
Sbjct: 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL-VELGCIKPLC-DLLTVMDS 375
Query: 886 KVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLI 920
K+ L ++ Q + N LI
Sbjct: 376 KIVQVALNGLENILRLGEQEAKRNGTGINPYCALI 410
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 1e-17
Identities = 77/446 (17%), Positives = 143/446 (32%), Gaps = 30/446 (6%)
Query: 1551 LSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE-----IAK 1605
+ + + + +I ++ S Q A + + PN I+
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 1606 EGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEV----PVAVLVRLLRSG 1661
G V + + + + L +A VL++I +S V V + + LL S
Sbjct: 63 PGVVARFVEFLKRKENC---TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE 119
Query: 1662 SEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEE---TAARLLEVLLN 1718
E ++ AL + D + + + + LL+L A L L
Sbjct: 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179
Query: 1719 NGKIRESKATKSAILPLSQYLL---DPQTQAQQARLLATLALGDLFQNEGLARSADAVSA 1775
A S L + +LL D A L+ L+ G N+ + DA
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP---NDKIQAVIDA-GV 235
Query: 1776 CRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSV 1835
CR LV +L ++ A+ A+ N+V + + +Q +L L+ S
Sbjct: 236 CRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1836 QAAMFVKLLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKAL-NALFNNFPRL 1894
+A + + + + Q + A I A +E A+ NA
Sbjct: 295 EACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353
Query: 1895 RATEPATLSIPHLVTALKTGSEATQEAALDALFLL-----RQAWSACPAEVSKAQSVAAA 1949
I L L + AL+ L + ++A + A
Sbjct: 354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413
Query: 1950 DAIPLLQYLIQSGPPRFQEKAEFLLQ 1975
+ +++L +KA L++
Sbjct: 414 YGLDKIEFLQSHENQEIYQKAFDLIE 439
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 62/425 (14%), Positives = 137/425 (32%), Gaps = 29/425 (6%)
Query: 1036 QDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTL-LSVANSGAAG 1094
+ ++ + ++ S+ + A Q L+ + ++ G
Sbjct: 11 NNMEMAPGGV---ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 1095 GLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLL 1154
+ L + + + +F +A + + A+P ++LL
Sbjct: 68 RFVEFLKRKE-------NCTLQFESAWVLTNIASGNSLQTRIVI----QAGAVPIFIELL 116
Query: 1155 KPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLL 1214
+ A+ L +A D + +++ L L + S + A L
Sbjct: 117 S--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174
Query: 1215 GILFSSAEIRRHESAFA-AVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQA 1273
L + + ++ L +L + A AL L S ++ A
Sbjct: 175 SNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDA 233
Query: 1274 --VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM 1331
+ LVE+L + A+ A+ +++ + + + + +A+ L +LSS
Sbjct: 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI--LNCSALQSLLHLLSS-PKE 290
Query: 1332 ELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DD 1388
+K +A + + GN TV A L+S+L T + A+
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 1389 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448
+ + + G + PL LL + + + L + + + I
Sbjct: 351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL--GEQEAKRNGTGINPYCA 408
Query: 1449 ILHEA 1453
++ EA
Sbjct: 409 LIEEA 413
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-14
Identities = 51/334 (15%), Positives = 116/334 (34%), Gaps = 23/334 (6%)
Query: 1654 LVRLLRSGSEGTVIGSLNAL--LVLESDDGTSAEAMAESGAIEALLELLRSHQCEET--- 1708
++ ++ S S + + L+ + + E ++ G + +E L+ +
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 1709 AARLLEVLLNNGKIRESKATKSAILPLSQYLL---DPQTQAQQARLLATLALGDLFQNEG 1765
+A +L + + ++ ++ +P+ LL Q Q L +A GD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA-GDSTMCRD 143
Query: 1766 LARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDL 1825
+ + L+ + +Q M A+ AL NL + + V+ L
Sbjct: 144 YVLDCNIL---PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 1826 IGSSDPETSVQAAMFVKLL--FSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKA 1883
+ SD + A + L N IQ + R + + V L+A
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRA 257
Query: 1884 LNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKA 1943
+ + ++ L+ L + E+ ++ A + + ++
Sbjct: 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI------SNITAGNRAQI 311
Query: 1944 QSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCL 1977
Q+V A+ P L ++Q+ R +++A + +
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-11
Identities = 61/359 (16%), Positives = 110/359 (30%), Gaps = 30/359 (8%)
Query: 975 AIWLLCVLACHDEKCKI--VIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLA 1032
A L + I VI G + + + + Q + +L
Sbjct: 40 ATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE--------SAWVLTN 91
Query: 1033 ILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGA 1092
I + R A+PI LL SE + A A+ ++ + + V +
Sbjct: 92 IASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY-VLDCNI 150
Query: 1093 AGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVG-ATSRKAIPALV 1151
L+ L Q+ L ++ AL L R + A + L
Sbjct: 151 LPPLLQLF-----SKQNRLTMTRNAVW-------ALSNLCRGKSPPPEFAKVSPCLNVLS 198
Query: 1152 DLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAAT 1211
LL A L L+ +++AG L + L A
Sbjct: 199 WLLFV--SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 1212 DLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESAR 1271
+ I+ + +A+ L+ +L + A + ++ +A + ++
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI-TAGNRAQIQTVI 315
Query: 1272 QA--VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN 1328
A L+ IL T R + A A+ S S VE+ + LC +L+
Sbjct: 316 DANIFPALISILQTAEFRTRKEAAWAITNATS-GGSAEQIKYLVELGCIKPLCDLLTVM 373
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 9e-09
Identities = 65/425 (15%), Positives = 139/425 (32%), Gaps = 57/425 (13%)
Query: 675 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE--KAIAEEI 732
F + N A S ++ + S E AT L+ + I+
Sbjct: 5 FHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 64
Query: 733 ILPA-TRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGS 791
++ L +A + + S T V +AG V + L S
Sbjct: 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT--RIVIQAGAVPIFIELLSSEFED 122
Query: 792 VATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPL-LQDKAIEIL 850
V +A+ AL ++ G + + + P++ + L + A+ L
Sbjct: 123 VQ-EQAVWALGNIA------GDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWAL 174
Query: 851 SRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGA-ALLICAAKVNH------ 903
S LCR + E S C++ ++ ++ ++ V AL + N
Sbjct: 175 SNLCRGKSPPP--EFAKVSPCLNVLSW-LLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 904 -----QRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAI----SIYRYTSE 954
+R+VE L H++ + +L + ++V ++ Q + A+ + E
Sbjct: 232 DAGVCRRLVELLMHNDYKV-VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290
Query: 955 EARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFT 1014
+ A W + + + +++A L + Q
Sbjct: 291 SIKK---------------EACWTISNITAGNRAQIQTVIDANIFPALIS-----ILQTA 330
Query: 1015 QMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVAS 1074
+ +++++ A+ A + I+ + I L +LL +S A + +
Sbjct: 331 EFRTRKEAA---WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
Query: 1075 LVCNG 1079
++ G
Sbjct: 388 ILRLG 392
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 9e-27
Identities = 75/528 (14%), Positives = 151/528 (28%), Gaps = 106/528 (20%)
Query: 39 IDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIP 98
+ R + V ++ SLL K + L ++ + + + GC+P
Sbjct: 14 LVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLP 73
Query: 99 PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV 158
L+ LL + + + ++ A
Sbjct: 74 LLIQLLHGNDKDSVLLGNSRGSKEARARA------------------------------- 102
Query: 159 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS 218
+ AL N+ S + + +L ++ ++ C+ E +
Sbjct: 103 -----SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCET------CWEWQEAHEPGMD 151
Query: 219 VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMIN- 277
+ A A L LS ++ R + G+ A+
Sbjct: 152 QDKNPMPAPVEH-------------QICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAEL 197
Query: 278 -ATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 336
Y+ L+ A AL N++ G + A + G
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-------------NKATLCSMKGC 244
Query: 337 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL--YGNPLLSI 394
+ + LV Q K +Q+ L +L +
Sbjct: 245 M-----------------------RALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKK 280
Query: 395 KLENSEAKRLLVGLITMATNE-VQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLG 452
L + + L+ E + ++ AL L + + +G + L+ L
Sbjct: 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340
Query: 453 LSSEQQ----QECSVALLCLLSN---ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSA 505
S+ E +L +S+ N+D + + + L+Q L+S S ++
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400
Query: 506 SILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553
L NL + + + AV L L+ + +A L +L
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 69/390 (17%), Positives = 142/390 (36%), Gaps = 38/390 (9%)
Query: 371 LPFLVQ---ERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEE-LVRALLK 426
LP L+Q +++ + S A ++ +E ++ L +
Sbjct: 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQ 131
Query: 427 LCNNEGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGG 485
+ + W + E G+ + + E Q +V +L LS +++ + A+ GG
Sbjct: 132 IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGG 190
Query: 486 IPPLVQILESG-----------SAKAKEDSASILRNLCNHSEDIRACV-ESADAVPALLW 533
+ + ++L+ S + + L NL +A + + AL+
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250
Query: 534 LLKNGSANGKEIAAKTLNHLIHKSDTA---------TISQLTALL-TSDLPESKVYVLDA 583
LK+ S + +++ A L +L ++D ++ L + VL A
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 310
Query: 584 LKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE-------TR 636
L + LS ++ + A + A+ ++ L+ + + GI T
Sbjct: 311 LWN-LSAHC-TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV 696
+D R+ L ++++ L S I+ A L + +++E A A+S L
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE-ALWDMGAVSMLK 427
Query: 697 VLAGSPVLEVAEQATCALANLILDSEVSEK 726
L S +A + AL NL+ + K
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 10/265 (3%)
Query: 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS 67
L V + L S+ + Y+ L L + + S + LV+ L+S S
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256
Query: 68 LAVKIQAATVLGSLC--KENELRVKVLLGGCIPPLLGLLKSSSAEG-QIAAAKTIYAVSQ 124
++ A+VL +L + + + G + L+ E + ++ +S
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316
Query: 125 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV-VDNLLTGALRNLSTSTEGFW---AA 180
++ I + +G + L L ++ + + G LRN+S+
Sbjct: 317 HCTENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
+ + L++ L + ++ C L + + + A L L+ S +
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 434
Query: 241 EASVRAEAAGALKSLSDHCKDARRE 265
+ + +A AL++L + ++
Sbjct: 435 K-MIAMGSAAALRNLMANRPAKYKD 458
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 1e-18
Identities = 60/407 (14%), Positives = 127/407 (31%), Gaps = 46/407 (11%)
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+P+L LL + + + + L ++ +S ++
Sbjct: 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLE 130
Query: 1109 DLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLAL 1168
+ E + + +++ V A+ L+ L
Sbjct: 131 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF------------- 177
Query: 1169 GFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDAT-----------EEAATDLLGIL 1217
++ M E G L+A+ + L + + A L +
Sbjct: 178 ---------DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228
Query: 1218 FSSAEIRRHESAFA-AVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQ--AV 1274
F + + + LVA L+ + A L +L + + ++ R+ +V
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288
Query: 1275 QPLVEIL-NTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMEL 1333
+ L+E E + ++AL L + + V+ A+ L L+
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD-GALAFLVGTLTYRSQTNT 347
Query: 1334 KGDAAELCGVLF-------GNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV 1386
G+L N R + C++ L+ L + + L L
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 1387 -DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1432
+ + E + GAV L L++ ++ M+ + AL L +RP+
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 4e-17
Identities = 46/296 (15%), Positives = 96/296 (32%), Gaps = 30/296 (10%)
Query: 32 LRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKV 91
L L ++ E + +H + + + + A VL L + E R +
Sbjct: 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAM 185
Query: 92 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA---------KDYVGSKIFSTEGVV 142
G + + LL+ + + + + + S +G +
Sbjct: 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245
Query: 143 PVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQS-S 200
L QLK+ S ++ + LRNLS + + G + L++ + S
Sbjct: 246 RALVAQLKSE--SEDLQQV-IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 201 TQAHVCFLLACMMEEDVSVCSR-VLAADATKQLLKLLGSGNEAS---VRAEAAGALKSLS 256
T V L + + A L+ L ++ + + G L+++S
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 257 DHC---KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG 309
+D R+ + +N + ++ + S + NA L N+S
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLT---------IVSNACGTLWNLSAR 409
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 5e-17
Identities = 72/496 (14%), Positives = 158/496 (31%), Gaps = 73/496 (14%)
Query: 1375 QHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434
H + + + L V L+ +L + + +SR L+ + + SC
Sbjct: 8 HHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMSRTLLAMSSSQDSC- 63
Query: 1435 LEMVKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTR 1493
+ M ++G + ++ +LH D + + + A L ++
Sbjct: 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA-----------SAALHNIIHS 112
Query: 1494 SEFGPDGQHSA--LQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELL 1551
G+ L +L I + + ++ ++ + +P A +L
Sbjct: 113 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL 172
Query: 1552 SHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTE 1611
L +E+ + + + +L + +++
Sbjct: 173 MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR--------------- 217
Query: 1612 LSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVP-----VAVLVRLLRSGSEGTV 1666
A L+++ + + LV L+S SE
Sbjct: 218 -----------------RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260
Query: 1667 IGSLNALLVLESD-DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLN-----NG 1720
+ L L D S + + E G+++AL+E + E T +L L N
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320
Query: 1721 KIRESKATKSAILPLSQYLLDP-QTQAQQARLLATLALGDLFQ-------NEGLARSADA 1772
+ A A+ L L QT L ++ + + R +
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380
Query: 1773 VSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPE 1832
+ + L+ L+ + + A L NL + ++ A+ + G V ++ +LI S
Sbjct: 381 L---QTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436
Query: 1833 TSVQAAMFVKLLFSNH 1848
++ +A ++ L +N
Sbjct: 437 IAMGSAAALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 6e-16
Identities = 60/453 (13%), Positives = 141/453 (31%), Gaps = 57/453 (12%)
Query: 1205 ATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHI 1264
++ G++ + +R V + ++L + G + ++ L ++ S+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDS 62
Query: 1265 RNAESARQAVQPLVEILN------------TGLEREQHAAIAALVRLLSENPSRALAVAD 1312
+ + L+++L+ G + + A AAL ++ P +
Sbjct: 63 CISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE 122
Query: 1313 VEM----------------------NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRI 1350
+ + +D + + A + L +
Sbjct: 123 IRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAP-VEHQICPAVCVLMKLSFDEEH 181
Query: 1351 RSTVAAARCVEPLVSLLVTEFSPA-----------QHSVVRALDKLV--DDEQLAELVAA 1397
R + ++ + LL + + AL L D A L +
Sbjct: 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 241
Query: 1398 HGAVIPLVGLLYGRNYMLHEAISRALVKL-GKDRPSCKLEMVKAGVIESVLDILHEAPD- 1455
G + LV L + L + I+ L L + + K + + G ++++++ E
Sbjct: 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301
Query: 1456 FLCSAFAELLRILTNNAGIAKGP--SAAKVVEPLFLLLTR--SEFGPDGQHSALQVLVNI 1511
+ L L+ + K + + L LT S +L N+
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 1512 LEHPQCRADY--SLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQ- 1568
D+ L + ++ L+ L S + + A L +L ++ +
Sbjct: 362 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 1569 VIGPLIRVLGSGIHILQQRAVKALVSIALTWPN 1601
+ L ++ S ++ + AL ++ P
Sbjct: 422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 3e-15
Identities = 79/481 (16%), Positives = 148/481 (30%), Gaps = 95/481 (19%)
Query: 1529 IEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL----------- 1577
+E + LL + + L + + + LI++L
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLG 90
Query: 1578 -GSGIHILQQRAVKALVSIALTWPNE--IAKEGGVTELSKIILQADPSLPHALWESAASV 1634
G + RA AL +I + P++ +E V L + I + WE +
Sbjct: 91 NSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR----AYCETCWEWQEAH 146
Query: 1635 LSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIE 1694
+ Q + + E + ++ L+ L S D AM E G ++
Sbjct: 147 EPGMDQD-------------KNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQ 192
Query: 1695 ALLELLRSHQCE-------------ETAARLLEVL-LNNGKIRES-KATKSAILPLSQYL 1739
A+ ELL+ A L L + + + + K + L L
Sbjct: 193 AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252
Query: 1740 LDPQTQAQQ--ARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1797
QQ A +L L+ ++ R +V +AL+ E E +
Sbjct: 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV---KALMECALEVKKESTLKSVLS 309
Query: 1798 ALQNLVMYSRSNKRA-VAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856
AL NL + NK A G + ++ + ++ +
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII--------------ESGG 355
Query: 1857 ETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSE 1916
+R +++ I AT + + L+ N + L+ LK+ S
Sbjct: 356 GILRNVSSLI-----ATNEDHRQILRENNC-----------------LQTLLQHLKSHSL 393
Query: 1917 ATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQC 1976
A L W+ +++ A+ +L+ LI S + L+
Sbjct: 394 TIVSNACGTL------WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
Query: 1977 L 1977
L
Sbjct: 448 L 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 2e-14
Identities = 60/372 (16%), Positives = 115/372 (30%), Gaps = 58/372 (15%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALL---- 1030
A L + K E + +L + + + + E +
Sbjct: 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPV 161
Query: 1031 ----------LAILFQDRDIIRAHATMKAIPILANLLKSEESAN-----------RYFAA 1069
L L D + A + + +A LL+ + R +A
Sbjct: 162 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221
Query: 1070 QAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALE 1129
A+ +L + G L++ L D+Q QV
Sbjct: 222 MALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ----------------QVIAS 265
Query: 1130 RLFRV-----EDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIV 1184
L + + + ++ AL++ + L L L+ C NK
Sbjct: 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKK-ESTLKSVLSALWNLSAHCTENKAD 324
Query: 1185 MV-EAGALEALTKYLSLGPQDATEEAATDLLGILF-------SSAEIRRHESAFAAVSQL 1236
+ GAL L L+ Q T GIL ++ + R+ + L
Sbjct: 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 384
Query: 1237 VAVLRLGGRGARYSAAKALESLFSADHIRNAESARQ--AVQPLVEILNTGLEREQHAAIA 1294
+ L+ +A L +L SA + ++ E+ AV L ++++ + + A
Sbjct: 385 LQHLKSHSLTIVSNACGTLWNL-SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 443
Query: 1295 ALVRLLSENPSR 1306
AL L++ P++
Sbjct: 444 ALRNLMANRPAK 455
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-12
Identities = 53/383 (13%), Positives = 112/383 (29%), Gaps = 23/383 (6%)
Query: 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEI 545
+ L+ +L + K+D + L + S+D + + +P L+ LL + +
Sbjct: 34 VYSLLSMLGT---HDKDDMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLL 89
Query: 546 AAKTLNHLIHKSDTATISQLTALLTSD-LPESKVYVLDALKSMLSVVSFSDILREGSAAN 604
+ +A + + D ++ VL L+ + + A
Sbjct: 90 GNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCET--CWEWQEAHE 147
Query: 605 DAVETMIKILSSTKEETQAKSASALAGI---FETRKDLRES-------SIAVKTLWSVMK 654
++ + + E + L + E R + E +
Sbjct: 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 207
Query: 655 LLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCAL 714
D S + A L + N+ + + LV S ++ + L
Sbjct: 208 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267
Query: 715 ANLILDSEVSEK-AIAEEIILPA-TRVLCEGTISG-KTLAAAAIARLLHSRKIDYTITDC 771
NL ++V+ K + E + A E +A+ L S D
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL--SAHCTENKADI 325
Query: 772 VNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPI 831
G + LV L S + + IL R+ + + + + +
Sbjct: 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQILRENNCLQTL 384
Query: 832 VSSIADATPLLQDKAIEILSRLC 854
+ + + + A L L
Sbjct: 385 LQHLKSHSLTIVSNACGTLWNLS 407
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 57/408 (13%), Positives = 128/408 (31%), Gaps = 38/408 (9%)
Query: 869 SGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLS 928
SGC+ + + ++ + + G + A+ + ++ HS + + +L
Sbjct: 69 SGCLPLLIQ-LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127
Query: 929 VVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEK 988
++E +R E + ++ +N + + A+ +L L+ +E
Sbjct: 128 LLEQ--IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC----PAVCVLMKLSFDEE- 180
Query: 989 CKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICAL--LLAILFQDRDIIRAHAT 1046
+ + E G + + + + + + ++ A L + F D +
Sbjct: 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240
Query: 1047 MK-AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLL-GCAD 1104
MK + L LKSE + A + +L + ++ G+ L+
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300
Query: 1105 ADVQD-----LLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPD 1159
L +LS E+ A+ LV L
Sbjct: 301 ESTLKSVLSALWNLSAHCT----------------ENKADICAVDGALAFLVGTLTYRSQ 344
Query: 1160 RPGAPFL-----ALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLL 1214
+ L + L ++ ++ E L+ L ++L A L
Sbjct: 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404
Query: 1215 GILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSAD 1262
+ + + + AVS L ++ + +A AL +L +
Sbjct: 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 9e-04
Identities = 65/476 (13%), Positives = 122/476 (25%), Gaps = 98/476 (20%)
Query: 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 665
+ +I++L +++ S +++ +S A+ + + D +
Sbjct: 71 CLPLLIQLLHGNDKDSVLLGNSR-----GSKEARARASAALHNI--IHSQPDDKRGRREI 123
Query: 666 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 725
L I E + +PV A C L L D E
Sbjct: 124 RVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH-R 182
Query: 726 KAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFL 785
A+ E L AIA LL Y +T+
Sbjct: 183 HAMNELGGLQ------------------AIAELLQVDCEMYGLTNDHYSITLR------- 217
Query: 786 ESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDK 845
A AL L+ L + +V+ + + LQ
Sbjct: 218 ---------RYAGMALTNLTF------GDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262
Query: 846 AIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGA-ALLICAAKV--N 902
+L L + G + ++ + AL +A N
Sbjct: 263 IASVLRNLSWRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
Query: 903 HQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGES 962
I + LV L+
Sbjct: 322 KADICAV-------DGALAFLVGTLT------------------------------YRSQ 344
Query: 963 ESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDS 1022
++ A+I + + L +E + ++ E + L +
Sbjct: 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---------SLTI 395
Query: 1023 SIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCN 1078
C L + ++ A M A+ +L NL+ S+ +A A+ +L+ N
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 5e-25
Identities = 54/366 (14%), Positives = 109/366 (29%), Gaps = 52/366 (14%)
Query: 222 RVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMIN--AT 279
+ Q + + E A L LS ++ R + G+ A+
Sbjct: 27 QEAHEPGMDQDKNPMPAPVE-HQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQV 84
Query: 280 IAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALAS 339
Y+ L+ A AL N++ G + + ++ + + AL +
Sbjct: 85 DCEMYGLTNDHYSITLRRYAGMALTNLTFG----------DVANKATLCSMKGCMRALVA 134
Query: 340 ALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL--YGNPLLSIKLE 397
L +S +Q+ L +L + L
Sbjct: 135 QL-------KSESED--------------------LQQVIASVLRNLSWRADVNSKKTLR 167
Query: 398 NSEAKRLLVGLITMATNE-VQEELVRALLKLCNNEGSLWRALQGREG-----IQLLISLL 451
+ + L+ E + ++ AL L + + +G + L
Sbjct: 168 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227
Query: 452 GLSSEQQQECSVALLCLLSN---ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASIL 508
++ E +L +S+ N+D + + + L+Q L+S S ++ L
Sbjct: 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287
Query: 509 RNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL 568
NL + + + AV L L+ + +A L +L+
Sbjct: 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMS 347
Query: 569 LTSDLP 574
S LP
Sbjct: 348 PGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 60/380 (15%), Positives = 129/380 (33%), Gaps = 60/380 (15%)
Query: 420 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479
L+ + C A + G+ + + E Q +V +L LS +++ + A
Sbjct: 12 LLEQIRAYCETCWEWQEAHEP--GMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHA 68
Query: 480 ITAAGGIPPLVQILESG-----------SAKAKEDSASILRNLCNHSEDIRACV-ESADA 527
+ GG+ + ++L+ S + + L NL +A +
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSM 587
+ AL+ LK+ S + +++ A L +L ++D SK + +
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRAD---------------VNSKKTLREV---- 169
Query: 588 LSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASAL----AGIFETRKDLRES 642
+V+ +++ KE T SAL A E + D+
Sbjct: 170 -----------------GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 643 SIAVKTLWSVMK-LLDVGSECILVEASRCLAAI--FLSVRENREVAAVARDALSPLVVLA 699
A+ L + + I+ L + ++ E+ + L L+
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272
Query: 700 GSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARL 758
S L + A L NL + ++A+ + + ++ +AAA+ L
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
Query: 759 LHSRKIDYTITDCVNRAGTV 778
+ +R Y + ++ ++
Sbjct: 333 MANRPAKYKDANIMSPGSSL 352
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-23
Identities = 66/371 (17%), Positives = 120/371 (32%), Gaps = 56/371 (15%)
Query: 387 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQL 446
Y + + + V L+KL +E A+ G+Q
Sbjct: 19 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQA 77
Query: 447 LISLLGLSSEQQ-----------QECSVALLCLLSNENDDSKWAITA-AGGIPPLVQILE 494
+ LL + E + + L L+ + +K + + G + LV L+
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 137
Query: 495 SGSAKAKEDSASILRNLC-NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 553
S S ++ AS+LRNL + + + +V AL+ +
Sbjct: 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV------ 191
Query: 554 IHKSDTATISQLTAL--LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 611
L+AL L++ E+K DI A V T+
Sbjct: 192 -----------LSALWNLSAHCTENKA----------------DICAVDGALAFLVGTLT 224
Query: 612 KILSSTKEETQAKSASAL---AGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEAS 668
+ L + + T +D R+ L ++++ L S I+ A
Sbjct: 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284
Query: 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA- 727
L + +++E A A+S L L S +A + AL NL+ + K
Sbjct: 285 GTLWNLSARNPKDQE-ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343
Query: 728 --IAEEIILPA 736
++ LP+
Sbjct: 344 NIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 13/277 (4%)
Query: 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS 67
L V + L S+ + Y+ L L + + S + LV+ L+S S
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140
Query: 68 LAVKIQAATVLGSLC--KENELRVKVLLGGCIPPLLGLLKSSSAEG-QIAAAKTIYAVSQ 124
++ A+VL +L + + + G + L+ E + ++ +S
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 125 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV-VDNLLTGALRNLSTSTEGFWAAT-- 181
++ I + +G + L L ++ + + G LRN+S+
Sbjct: 201 HCTENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258
Query: 182 -VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
+ + L++ L + ++ C L + + + A L L+ S +
Sbjct: 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 318
Query: 241 EASVRAEAAGALKSLSDH---CKDARREIAGSNGIPA 274
+ + +A AL++L + ++ + +P+
Sbjct: 319 K-MIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-20
Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 30/302 (9%)
Query: 26 QEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN 85
+ L L ++ E + +H + + + + A VL L +
Sbjct: 4 HHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE 63
Query: 86 ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA---------KDYVGSKIF 136
E R + G + + LL+ + + + + +
Sbjct: 64 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123
Query: 137 STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLT 195
S +G + L QLK+ S ++ + LRNLS + + G + L++
Sbjct: 124 SMKGCMRALVAQLKSE--SEDLQQV-IASVLRNLSWRADVNSKKTLREVGSVKALMECAL 180
Query: 196 LGQS-STQAHVCFLLACMMEEDVSVCSR-VLAADATKQLLKLLGSGNEAS---VRAEAAG 250
+ ST V L + + A L+ L ++ + + G
Sbjct: 181 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240
Query: 251 ALKSLSDHC---KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANIS 307
L+++S +D R+ + +N + ++ + S + NA L N+S
Sbjct: 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT---------IVSNACGTLWNLS 291
Query: 308 GG 309
Sbjct: 292 AR 293
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 4e-20
Identities = 55/367 (14%), Positives = 116/367 (31%), Gaps = 43/367 (11%)
Query: 1501 QHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQL 1560
H L +L I + + ++ ++ + +P A +L L +E+
Sbjct: 6 HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65
Query: 1561 QKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQAD 1620
+ + + +L + +++ + L+ +
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL---------RRYAGMALTNLTFGDV 116
Query: 1621 PSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVL-ESD 1679
+ + LV L+S SE + L L
Sbjct: 117 ANKATLCSMKGC------------------MRALVAQLKSESEDLQQVIASVLRNLSWRA 158
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLN-----NGKIRESKATKSAILP 1734
D S + + E G+++AL+E + E T +L L N + A A+
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 218
Query: 1735 LSQYLLDP-QTQAQQARLLATLALGDLFQNEGLARSADAVS------ACRALVNVLEEQP 1787
L L QT L ++ +A + D + L+ L+
Sbjct: 219 LVGTLTYRSQTNTLAIIESGGGILRNVSSL--IATNEDHRQILRENNCLQTLLQHLKS-H 275
Query: 1788 TEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSN 1847
+ + A L NL + ++ A+ + G V ++ +LI S ++ +A ++ L +N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
Query: 1848 HTIQEYA 1854
+
Sbjct: 336 RPAKYKD 342
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 6e-20
Identities = 52/295 (17%), Positives = 93/295 (31%), Gaps = 35/295 (11%)
Query: 55 AVPVLVSLLRSG-----------SLAVKIQAATVLGSLCKENELRVKVL--LGGCIPPLL 101
+ + LL+ S+ ++ A L +L + L + GC+ L+
Sbjct: 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133
Query: 102 GLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDN 161
LKS S + Q A + +S D K G V L E K +
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWR--ADVNSKKTLREVGSVKALMECALEVKKESTLKS- 190
Query: 162 LLTGALRNLSTSTEGFWAATVQA-GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVC 220
+ AL NLS A G + LV LT + + ++ S+
Sbjct: 191 -VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 221 SR-------VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIP 273
+ + + + LL+ L S + ++ + A G L +LS + + +
Sbjct: 250 ATNEDHRQILRENNCLQTLLQHLKSHSL-TIVSNACGTLWNLSARNPKDQEALWDMGAVS 308
Query: 274 AMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPA 328
+ N + K + + AL N+ S P+
Sbjct: 309 MLKNLIHSKHKM---------IAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 7e-18
Identities = 54/311 (17%), Positives = 111/311 (35%), Gaps = 29/311 (9%)
Query: 1146 AIPALVDLLK-PIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQD 1204
+ + + P+ + A+ L++L+ D ++ M E G L+A+ + L + +
Sbjct: 33 GMDQDKNPMPAPVEHQICP---AVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEM 88
Query: 1205 AT-----------EEAATDLLGILFSSAEIRRHESAFA-AVSQLVAVLRLGGRGARYSAA 1252
A L + F + + + LVA L+ + A
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148
Query: 1253 KALESLFSADHIRNAESARQ--AVQPLVEIL-NTGLEREQHAAIAALVRLLSENPSRALA 1309
L +L + + ++ R+ +V+ L+E E + ++AL L +
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208
Query: 1310 VADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLF-------GNTRIRSTVAAARCVEP 1362
+ V+ A+ L L+ G+L N R + C++
Sbjct: 209 ICAVD-GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267
Query: 1363 LVSLLVTEFSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISR 1421
L+ L + + L L + + E + GAV L L++ ++ M+ +
Sbjct: 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327
Query: 1422 ALVKLGKDRPS 1432
AL L +RP+
Sbjct: 328 ALRNLMANRPA 338
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 63/364 (17%), Positives = 113/364 (31%), Gaps = 64/364 (17%)
Query: 1654 LVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE------- 1706
+ + E + ++ L+ L S D AM E G ++A+ ELL+
Sbjct: 37 DKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 95
Query: 1707 ------ETAARLLEVL-LNNGKIRES-KATKSAILPLSQYLLDPQTQAQQ--ARLLATLA 1756
A L L + + + + K + L L QQ A +L L+
Sbjct: 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155
Query: 1757 LGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRA-VAE 1815
++ R +V +AL+ E E + AL NL + NK A
Sbjct: 156 WRADVNSKKTLREVGSV---KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 1816 AGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITAAIEKELWATGT 1875
G + ++ + ++ + +R +++ I AT
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAII--------------ESGGGILRNVSSLI-----ATNE 253
Query: 1876 VNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSA 1935
+ + L+ N + L+ LK+ S A L+ L
Sbjct: 254 DHRQILRENNC-----------------LQTLLQHLKSHSLTIVSNACGTLWNL------ 290
Query: 1936 CPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSV 1995
+++ A+ +L+ LI S + L+ L K N M
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGS 350
Query: 1996 GNPS 1999
PS
Sbjct: 351 SLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-14
Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 44/292 (15%)
Query: 1049 AIPILANLLKSEESAN-----------RYFAAQAVASLVCNGSRGTLLSVANSGAAGGLI 1097
+ +A LL+ + R +A A+ +L + G L+
Sbjct: 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133
Query: 1098 SLLGCADADVQD-----LLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVD 1152
+ L D+Q L +LS + + ++ AL++
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWR----------------ADVNSKKTLREVGSVKALME 177
Query: 1153 LLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMV-EAGALEALTKYLSLGPQDATEEAAT 1211
+ L L L+ C NK + GAL L L+ Q T
Sbjct: 178 CALEVKK-ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 1212 DLLGILFS-SAEIRRHESAFAAVSQ------LVAVLRLGGRGARYSAAKALESLFSADHI 1264
GIL + S+ I +E + + L+ L+ +A L +L SA +
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-SARNP 295
Query: 1265 RNAESARQ--AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVE 1314
++ E+ AV L ++++ + + AAL L++ P++ +
Sbjct: 296 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMS 347
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 53/301 (17%), Positives = 106/301 (35%), Gaps = 26/301 (8%)
Query: 1127 ALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAP---------FLALGFLIQLAKD 1177
L +L E+ R + A+ +LL+ + G A L L
Sbjct: 55 VLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 114
Query: 1178 CPSNK-IVMVEAGALEALTKYLSLGPQDATEEAATDLLGILF-SSAEIRRHESAFAAVSQ 1235
+NK + G + AL L +D + A+ L + + + ++ +V
Sbjct: 115 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 174
Query: 1236 LVAVLRLGGR-GARYSAAKALESL--FSADHIRNAESARQAVQPLVEILNTGLEREQHAA 1292
L+ + S AL +L ++ + + A+ LV L + A
Sbjct: 175 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 234
Query: 1293 IAALVRLLSENPSRALAVAD------VEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLF 1345
I + +L N S +A + E N + L + L S+ S+ + +A L +
Sbjct: 235 IESGGGILR-NVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSA 292
Query: 1346 GNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD---EQLAELVAAHGAVI 1402
N + + + V L +L+ ++ AL L+ + + + + G+ +
Sbjct: 293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352
Query: 1403 P 1403
P
Sbjct: 353 P 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 47/320 (14%), Positives = 97/320 (30%), Gaps = 33/320 (10%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICAL--LLA 1032
A+ +L L+ +E + + E G + + + + + + ++ A L
Sbjct: 52 AVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 110
Query: 1033 ILFQDRDIIRAHATMK-AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSG 1091
+ F D +MK + L LKSE + A + +L + ++ G
Sbjct: 111 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 170
Query: 1092 AAGGLISLL-GCADADVQD-----LLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRK 1145
+ L+ L +LS A + + V
Sbjct: 171 SVKALMECALEVKKESTLKSVLSALWNLS------------AHCTENKADICAVDG---- 214
Query: 1146 AIPALVDLLKPIPDRPGAPFL-----ALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSL 1200
A+ LV L + L + L ++ ++ E L+ L ++L
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 1201 GPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFS 1260
A L + + + + AVS L ++ + +A AL +L
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL-- 332
Query: 1261 ADHIRNAESARQAVQPLVEI 1280
+ + P +
Sbjct: 333 MANRPAKYKDANIMSPGSSL 352
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 50/321 (15%), Positives = 98/321 (30%), Gaps = 32/321 (9%)
Query: 1345 FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPL 1404
+ T A ++ + + V L KL DE+ + G + +
Sbjct: 19 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 78
Query: 1405 VGLLY-----------GRNYMLHEAISRALVKLGKDRPSCKLEMV-KAGVIESVLDIL-H 1451
LL + L AL L + K + G + +++ L
Sbjct: 79 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 138
Query: 1452 EAPDFLCSAFAELLRILT--NNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV 1509
E+ D A +LR L+ + K V+ L + S L L
Sbjct: 139 ESEDLQQVI-ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALW 196
Query: 1510 NILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAEL-------LSHLLLEEQLQK 1562
N+ H A+ L+ L + E +S L+ + +
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256
Query: 1563 DPVTQQ-VIGPLIRVLGSGIHILQQRAVKALVSIALTWPN---EIAKEGGVTELSKIILQ 1618
+ + + L++ L S + A L +++ P + G V+ L +I
Sbjct: 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316
Query: 1619 ADPSLPHALWESAASVLSSIL 1639
+ +A+ L +++
Sbjct: 317 KHKMIA----MGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 40/320 (12%), Positives = 92/320 (28%), Gaps = 37/320 (11%)
Query: 562 ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKE-- 619
+ Q + + + + L + SF + R ++ + ++L E
Sbjct: 34 MDQDKNPMPAPVEHQICPAVCVLMKL----SFDEEHRHAMNELGGLQAIAELLQVDCEMY 89
Query: 620 ---------ETQAKSASALAGI----FETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 666
+ + AL + + L ++ L + L SE +
Sbjct: 90 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL---VAQLKSESEDLQQV 146
Query: 667 ASRCLAAIFLSVRENREVAAVARDALSPLVVLA-GSPVLEVAEQATCALANLILDSEVSE 725
+ L + N + ++ L+ A + AL NL ++
Sbjct: 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206
Query: 726 KAIAEE------IILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVL 779
I ++ T T++ + + + + +
Sbjct: 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 266
Query: 780 ALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 839
L+ L+S S ++ S A L LS Q +++ + + I
Sbjct: 267 TLLQHLKSHSLTI-VSNACGTLWNLSARNPKD-------QEALWDMGAVSMLKNLIHSKH 318
Query: 840 PLLQDKAIEILSRLCRDQPA 859
++ + L L ++PA
Sbjct: 319 KMIAMGSAAALRNLMANRPA 338
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 60/413 (14%), Positives = 106/413 (25%), Gaps = 91/413 (22%)
Query: 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAI 728
L I E + +PV A C L L D E A+
Sbjct: 11 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAM 69
Query: 729 AEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA 788
E L AIA LL Y +T+
Sbjct: 70 NELGGLQ------------------AIAELLQVDCEMYGLTNDHYSITLR---------- 101
Query: 789 SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIE 848
A AL L+ A+ L + +V+ + + LQ
Sbjct: 102 ------RYAGMALTNLTFGDVAN------KATLCSMKGCMRALVAQLKSESEDLQQVIAS 149
Query: 849 ILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGA-ALLICAAKV--NHQR 905
+L L + G + ++ + AL +A N
Sbjct: 150 VLRNLSWRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208
Query: 906 IVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESS 965
I + LV L+ ++
Sbjct: 209 ICAV-------DGALAFLVGTLT------------------------------YRSQTNT 231
Query: 966 TAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIW 1025
A+I + + L +E + ++ E + L + + ++
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-----SLTIVSNA--- 283
Query: 1026 ICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCN 1078
C L + ++ A M A+ +L NL+ S+ +A A+ +L+ N
Sbjct: 284 -CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 59/257 (22%)
Query: 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAE 110
H +P +V L S A L + E V+ G +P L+ LL S + +
Sbjct: 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 111 GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170
A AL N+
Sbjct: 70 ILQEAL------------------------------------------------WALSNI 81
Query: 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATK 230
++ A + AG + LV+LL+ + L+ + V+ A A
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 231 QLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290
L++LL S NE + EA AL +++ + ++ + + + + +Q
Sbjct: 142 ALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ---------LQSH 191
Query: 291 YAQALQENAMCALANIS 307
+ +Q+ A AL +
Sbjct: 192 ENEKIQKEAQEALEKLQ 208
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 36/193 (18%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Query: 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVA 464
+V + + + +R L ++ + +A+ + L+ LL +EQ + ++
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 465 LLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES 524
L +++ ++ A+ AG +P LVQ+L S + + +++ L N+ + + V
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPES 576
A A+PAL+ LL + + + A L+++ + + +L L + + +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 577 KVYVLDALKSMLS 589
+ +AL+ + S
Sbjct: 197 QKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 8e-18
Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 38/242 (15%)
Query: 476 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL 535
S +P +VQ L S + + + L + + + V A A+PAL+ LL
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 536 KNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595
+ + + A L+++ + E V+DA
Sbjct: 64 SSPNEQILQEALWALSNIASGGN----------------EQIQAVIDA------------ 95
Query: 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKL 655
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++L
Sbjct: 96 ---------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 656 LDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715
L +E IL EA L+ I S ++ A AL L L ++ ++A AL
Sbjct: 147 LSSPNEQILQEALWALSNI-ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205
Query: 716 NL 717
L
Sbjct: 206 KL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 1651 VAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH---QCEE 1707
+ +V+ L S + + +L L + S +A+ ++GA+ AL++LL S +E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 1708 TAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLA 1767
L + + ++ A+ L Q L P Q Q A AL ++ G
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE---ALWALSNIAS--GGN 128
Query: 1768 RSADAVSACRA---LVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLD 1824
AV A LV +L P E++ A+ AL N+ K+AV EAG ++ +
Sbjct: 129 EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 1825 LIGSSDPETSVQAAMFVKLLFSN 1847
L + + +A ++ L S+
Sbjct: 188 LQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 8/204 (3%)
Query: 1146 AIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA 1205
+P +V L AL L Q+A +++AGAL AL + LS +
Sbjct: 13 ELPQMVQQLNS--PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 1206 TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIR 1265
+EA L I E + A+ LV +L A AL ++ ++
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNE 129
Query: 1266 NAES--ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCR 1323
++ A+ LV++L++ E+ A+ AL + S + AV E A++ L +
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV--KEAGALEKLEQ 187
Query: 1324 ILSSNCSMELKGDAAELCGVLFGN 1347
+ S + +++ +A E L +
Sbjct: 188 LQSHE-NEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 5/206 (2%)
Query: 1351 RSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLY 1409
+ +V L + S +R L ++ + + V GA+ LV LL
Sbjct: 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 1410 GRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL-HEAPDFLCSAFAELLRIL 1468
N + + AL + ++ AG + +++ +L L A L I
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 1469 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQA 1528
+ + A + L LL+ AL L NI + + A
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQKQA-VKEAGA 181
Query: 1529 IEPLIPLLDSPAPAVQQLAAELLSHL 1554
+E L L +Q+ A E L L
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 7/209 (3%)
Query: 1180 SNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAV 1239
+ L + + L+ Q + A L I E + A+ LV +
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 1240 LRLGGRGARYSAAKALESLFSADHIRNAESARQA--VQPLVEILNTGLEREQHAAIAALV 1297
L A AL ++ ++ ++ A + LV++L++ E+ A+ AL
Sbjct: 63 LSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1298 RLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLFGNTRIRSTVAA 1356
+ S + AV ++ A+ L ++LSS + ++ +A L + G + V
Sbjct: 122 NIASGGNEQIQAV--IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKL 1385
A +E L L E Q AL+KL
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 6/205 (2%)
Query: 1313 VEMNAVDVLCRILSSNCSMELKGDAA-ELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEF 1371
+ + + + L+S + A +L + G V A + LV LL +
Sbjct: 9 HHGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 1372 SPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR 1430
+ AL + + + V GA+ LV LL N + + AL +
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Query: 1431 PSCKLEMVKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFL 1489
++ AG + +++ +L L A L I + + A +E L
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 1490 LLTRSEFGPDGQHSALQVLVNILEH 1514
L + Q A + L + H
Sbjct: 188 LQSHEN--EKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 375 VQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS 433
+ + + AL+++ G + ++ A LV L++ ++ +E + AL + +
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 434 LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 493
+A+ + L+ LL +EQ + ++ L +++ ++ K A+ AG + L Q+
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 494 ESGSAKAKEDSASILRNLCNH 514
+ K ++++ L L +H
Sbjct: 190 SHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 51/234 (21%), Positives = 81/234 (34%), Gaps = 60/234 (25%)
Query: 1504 ALQVLVNILEHPQ-------CRADYSLTSHQ-----------AIEPLIPLLDSPAPAVQQ 1545
L +V L P R + S A+ L+ LL SP + Q
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 1546 LAAELLSHLLLEEQLQKDPVTQ-QVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIA 1604
A LS++ Q V + L+++L S + Q A+ AL +IA
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-------- 124
Query: 1605 KEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEG 1664
G E + ++ A + LV+LL S +E
Sbjct: 125 --SGGNEQIQAVIDAG-----------------------------ALPALVQLLSSPNEQ 153
Query: 1665 TVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVL 1716
+ +L AL + S +A+ E+GA+E L +L + + A LE L
Sbjct: 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 31/176 (17%), Positives = 71/176 (40%), Gaps = 18/176 (10%)
Query: 182 VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 241
+ +V+ L L+ + V+ A A L++LL S NE
Sbjct: 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68
Query: 242 ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMC 301
+ EA AL +++ + + + + +PA++ +P+++ + + A+
Sbjct: 69 -QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---------ILQEALW 118
Query: 302 ALANISGGLSNVISSLGQS--------LESCSSPAQVADTLGALASALMIYDSKAE 349
AL+NI+ G + I ++ + L S + + + L AL++ + + +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 39/238 (16%)
Query: 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581
+P ++ L + + A + L+ + + E V+
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN----------------EQIQAVI 51
Query: 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE 641
DA A+ ++++LSS E+ ++ AL+ I + +
Sbjct: 52 DA---------------------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 642 SSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS 701
+ I L ++++LL +E IL EA L+ I E A + AL LV L S
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-QAVIDAGALPALVQLLSS 149
Query: 702 PVLEVAEQATCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARL 758
P ++ ++A AL+N+ ++A+ E L ++ + A A+ +L
Sbjct: 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 55/295 (18%), Positives = 96/295 (32%), Gaps = 91/295 (30%)
Query: 1683 SAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDP 1742
S + +++ L S D
Sbjct: 4 SHHHHHHGSELPQMVQQLNSP-------------------------------------DQ 26
Query: 1743 QTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNL 1802
Q R L+ +A G NE + DA A ALV +L P E++ A+ AL N+
Sbjct: 27 QELQSALRKLSQIASGG---NEQIQAVIDA-GALPALVQLLSS-PNEQILQEALWALSNI 81
Query: 1803 VMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAI 1862
+AV +AG + ++ L+ S + + +A + + S +E ++A+
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-------GNEQIQAV 134
Query: 1863 TAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLVTALKTGSEATQEAA 1922
A A +P LV L + +E + A
Sbjct: 135 IDA-------------------GA-----------------LPALVQLLSSPNEQILQEA 158
Query: 1923 LDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCL 1977
L AL + + Q+V A A+ L+ L + Q++A+ L+ L
Sbjct: 159 LWAL------SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 17/213 (7%)
Query: 1049 AIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+P + L S + A + ++ + +G + +V ++GA L+ LL + +
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 1109 DLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRK-AIPALVDLLKPIPDRPGAPFLA 1167
+ AL AL + + ++ A A+PALV LL A
Sbjct: 72 -------QEAL------WALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEA 116
Query: 1168 LGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHE 1227
L L +A +++AGAL AL + LS + +EA L I E ++
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
Query: 1228 SAFAAVSQLVAVLRLGGRGARYSAAKALESLFS 1260
A+ +L + + A +ALE L S
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 34/187 (18%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICAL--LLA 1032
A+ L +A + +++AGA+ L +S + I AL L
Sbjct: 32 ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-----------NEQILQEALWALSN 80
Query: 1033 ILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGA 1092
I + I+A A+P L LL S A A++++ +G + +V ++GA
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGA 139
Query: 1093 AGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRV----EDIRVGATSRKAIP 1148
L+ LL + + Q AL L + + + A+
Sbjct: 140 LPALVQLLSSPNEQIL----------------QEALWALSNIASGGNEQKQAVKEAGALE 183
Query: 1149 ALVDLLK 1155
L L
Sbjct: 184 KLEQLQS 190
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
A+W L +A + +++AGA+ L L +++ L I
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALV-----QLLSSPNEQILQEA----LWALSNIA 124
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
+ I+A A+P L LL S A A++++ G+ V +GA
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA-VKEAGALE 183
Query: 1095 GLISLLGCADADVQD 1109
L L + +Q
Sbjct: 184 KLEQLQSHENEKIQK 198
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 1e-20
Identities = 42/267 (15%), Positives = 87/267 (32%), Gaps = 50/267 (18%)
Query: 1 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLV 60
M+ L+ + ++ QE+E +L L +L + +NA + S ++
Sbjct: 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNA-ADFCQLSGMHLLVG 88
Query: 61 SLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTI 119
L +G+ ++ +AA ++G+ + ++ +VL G + LL LL + + A
Sbjct: 89 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA--- 145
Query: 120 YAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWA 179
A+ L E
Sbjct: 146 --------------------------------------------LFAISCLVREQEAGLL 161
Query: 180 ATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG 239
++ G +L++ + + FLL ++ + + +QL+ L+ +
Sbjct: 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE 221
Query: 240 NEASVRAEAAGALKSLSDHCKDARREI 266
+ GAL SL RE
Sbjct: 222 HS-PFHEHVLGALCSLVTDFPQGVREC 247
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 6e-15
Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 1/159 (0%)
Query: 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECS 462
L+ + ++ + + N ++ + G ++ L+ LL + + +
Sbjct: 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 145
Query: 463 VALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 522
+ + L E + G L++ ++ K K SA +L+NL + + +
Sbjct: 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 523 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT 561
S V L+ L++ + E L L+
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 2e-12
Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 3/161 (1%)
Query: 375 VQERTIEALASL-YGNPLLSIKLENSEA-KRLLVGLITMATNEVQEELVRALLKLCNNEG 432
++ R + + + + ++ A ++LL L A + V+ + + A+ L +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 433 SLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 492
+ +G +L+ + ++ + S LL L + + K + + G + LV +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 493 LESGSAKAKEDSASILRNLCNHSED-IRACVESADAVPALL 532
+ + + E L +L +R C E + LL
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 6e-12
Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 14/218 (6%)
Query: 436 RALQGREGIQLLISLLGLSSEQQQECSVALLCLLS-NENDDSKWAITAAGGIPPLV-QIL 493
L+ + + QQE AL L EN D+ G+ LV + L
Sbjct: 32 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91
Query: 494 ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANG-KEIAAKTLNH 552
E+G+A + +A ++ + I+ V A+ LL LL + + + A ++
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151
Query: 553 LIHKSDTAT--------ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604
L+ + + S L + + + KV L+++L + +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHKGTLCSM 208
Query: 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 642
V+ ++ ++ + AL +
Sbjct: 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 246
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 33/208 (15%), Positives = 70/208 (33%), Gaps = 6/208 (2%)
Query: 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSS 1327
Q + P ++++ L+ L EN A +++ + +L
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLE 92
Query: 1328 NCSMELKGDAAELCGVLFG-NTRIRSTVAAARCVEPLVSLLVTEFSP-AQHSVVRALDKL 1385
+ L+ AA+L G I+ V + L+ LL + + + A+ L
Sbjct: 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 152
Query: 1386 V-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444
V + E L+ + + L + L L P K + G+++
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212
Query: 1445 SVLDIL-HEAPDFLCSAFAELLRILTNN 1471
++ ++ E F L ++T+
Sbjct: 213 QLVALVRTEHSPFHEHVLGALCSLVTDF 240
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 40/288 (13%), Positives = 87/288 (30%), Gaps = 47/288 (16%)
Query: 1485 EPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLI-PLLDSPAPAV 1543
P + AL++L ++ E+ AD + L+ L++ A +
Sbjct: 41 MPPTAGEAEQAADQQEREGALELLADLCENMDNAAD--FCQLSGMHLLVGRYLEAGAAGL 98
Query: 1544 QQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEI 1603
+ AA+L+ Q Q+ +L A++ L+ + +
Sbjct: 99 RWRAAQLIGTCS-----QNVAAIQE-------------QVLGLGALRKLLRLLDRDACDT 140
Query: 1604 AKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSE 1663
+ + +S ++ + + +VL+R ++ +
Sbjct: 141 VRVKALFAISCLVRE-QEAGLLQFLRLDG------------------FSVLMRAMQQQVQ 181
Query: 1664 GTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCE--ETAARLLEVLLNNGK 1721
+ S L L + G ++ L+ L+R+ E L L+ +
Sbjct: 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241
Query: 1722 -----IRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNE 1764
RE + +L LL + Q+ L F +
Sbjct: 242 QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 5/198 (2%)
Query: 1248 RYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLERE-QHAAIAALVRLLSENPSR 1306
R A + L L + LV + A + +
Sbjct: 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI 116
Query: 1307 ALAVADVEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVS 1365
V + + A+ L R+L + ++ A + ++ L+
Sbjct: 117 QEQV--LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174
Query: 1366 LLVTEFSPAQHSVVRALDKL-VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALV 1424
+ + + L L V + + + G V LV L+ + HE + AL
Sbjct: 175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALC 234
Query: 1425 KLGKDRPSCKLEMVKAGV 1442
L D P E + +
Sbjct: 235 SLVTDFPQGVRECREPEL 252
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 21/170 (12%)
Query: 182 VQAGGID-ILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
Q G+ ++ + L G + + L+ + ++ +VL A ++LL+LL
Sbjct: 78 CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 137
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+VR +A A+ L + + +G ++ A ++ L+ +
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK---------LKVKSA 188
Query: 301 CALANISGGL---------SNVISSLGQSLESCSSPAQ--VADTLGALAS 339
L N+ G ++ L + + SP V L +L +
Sbjct: 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 30/240 (12%), Positives = 79/240 (32%), Gaps = 15/240 (6%)
Query: 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN--GKEIAAKTLNHLIHKSDT 559
S +R E +++C+ +A+ +E A + L L D
Sbjct: 14 VPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN 73
Query: 560 AT--------ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 611
A + L + + + + ++E A+ ++
Sbjct: 74 AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC---SQNVAAIQEQVLGLGALRKLL 130
Query: 612 KIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 670
++L + + K+ A++ + ++ + + +M+ + + + V+++
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190
Query: 671 LAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAE 730
L + + E++ + + LV L + E AL +L+ D + E
Sbjct: 191 LQNLLVGHPEHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 249
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 14/251 (5%)
Query: 1692 AIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLL---DPQTQAQQ 1748
E Q E A LL L N S + L L + +
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 1749 ARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRS 1808
A+L+ T + + + A R L+ +L+ + ++V A+ A+ LV +
Sbjct: 103 AQLIGTCS----QNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 1809 NKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSET--VRAITAAI 1866
G V++ + + V++A ++ L H + V+ + A +
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218
Query: 1867 EKELWATGTVNEEYLKALNALFNNFPR-LRATEPATLSIPHLVTALKTGSEATQEAALDA 1925
E +E L AL +L +FP+ +R L + L+ + E +
Sbjct: 219 RTE---HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ-QHEEYQEE 274
Query: 1926 LFLLRQAWSAC 1936
L + C
Sbjct: 275 LEFCEKLLQTC 285
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 7e-07
Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 11/233 (4%)
Query: 1720 GKIRESKATKSAILPLSQYLLDPQTQAQQA-----RLLATLALGDLFQNEGLARSADAVS 1774
G+ E + KS + LSQ + +A+QA R A L DL +N A +S
Sbjct: 22 GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLS 81
Query: 1775 ACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETS 1834
LV E ++ A + + + V G ++ +L L+ +T
Sbjct: 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141
Query: 1835 VQAAMFV--KLLFSNHTIQEY-ASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNF 1891
A+F L+ + + A++++ + + L L
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGH 198
Query: 1892 PRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQ 1944
P + T + + LV ++T E L AL L + E + +
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 12/147 (8%)
Query: 975 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL 1034
A++ + L E + + VL + + + LL +L
Sbjct: 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---------VQKLKVKSAFLLQNLL 195
Query: 1035 FQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAG 1094
+ +M + L L+++E S A+ SLV + +G
Sbjct: 196 VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE---L 252
Query: 1095 GLISLLGCADADVQDLLDLSEEFALVR 1121
GL LL +Q + EE
Sbjct: 253 GLEELLRHRCQLLQQHEEYQEELEFCE 279
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 7/157 (4%)
Query: 652 VMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV-LAGSPVLEVAEQA 710
V + L+ G+ + A++ + +V +E + AL L+ L V +A
Sbjct: 87 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE-QVLGLGALRKLLRLLDRDACDTVRVKA 145
Query: 711 TCALANLILDSEVSEKAIAEEIILPA-TRVLCEGTISGKTLAAAAIARLLHSRKIDYTIT 769
A++ L+ + E R + + K +A + LL
Sbjct: 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHK 202
Query: 770 DCVNRAGTVLALVSFLESASGSVATSEALDALAILSR 806
+ G V LV+ + + L AL L
Sbjct: 203 GTLCSMGMVQQLVALVRTEHSPFHE-HVLGALCSLVT 238
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 2e-20
Identities = 115/761 (15%), Positives = 202/761 (26%), Gaps = 228/761 (29%)
Query: 551 NHLIHKSDTAT----------ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600
+H H D T +S + + K V D KS+LS I+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNF-DCK-DVQDMPKSILSKEEIDHIIMSK 58
Query: 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 660
A + + +LS +E Q L R + K L S +K +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVL------RINY-------KFLMSPIK-----T 100
Query: 661 ECILVEASRCLAAIFLSVRENREVAAVARD--ALSPLVVLAGSPVLEVAEQATCALANLI 718
E +++ R+ + D + V P L++ + AL L
Sbjct: 101 EQRQPSMMT---RMYIEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQ----ALLELR 148
Query: 719 LDSEVSEKAIAEEIILPATRVLCEGTI-SGKTLAAAAIARLLHSRKIDYTITDCVNRAGT 777
PA VL +G + SGKT A + Y + ++
Sbjct: 149 ----------------PAKNVLIDGVLGSGKTWVALDVCL-------SYKVQCKMD--FK 183
Query: 778 VLALVSFLESASGSVATSEA-LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA 836
+ L + + + E L+ L L + P W ++ +I
Sbjct: 184 IFWL-NL-----KNCNSPETVLEMLQKLLY------QIDPNWTSRSDHSSNI-------- 223
Query: 837 DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLI 896
L L RL + +P LL+
Sbjct: 224 ---KLRIHSIQAELRRLLKSKP-------------------------YEN------CLLV 249
Query: 897 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEA 956
V + + N SC + L+T R + D + + + S +
Sbjct: 250 L-LNVQNAKAWNAFNL--SC----KILLTT---------RFKQVTDFLSAATTTHISLDH 293
Query: 957 RNGGESESSTAVIFGENLAIWLLCVLACHD---EKCKI---VIMEAGAM----------- 999
+ + + +L C D E +
Sbjct: 294 HSMTLTPDEVKSLL----LKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 1000 -----DVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILA 1054
D LT I SL+ +Y++ L++ I + ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVFPPSAHI-----PTILLSLIW 396
Query: 1055 NLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLS 1114
+ + V + + S+ IS+ L+L
Sbjct: 397 FDVIKSDV-------MVVVNKLHK------YSLVEKQPKESTISIPSI-------YLELK 436
Query: 1115 EEFALVRYPDQVALERLFRVE--DIRVGATSRKAIPALVD----------LLKPIPDRPG 1162
+ ++ AL R V+ +I S IP +D L
Sbjct: 437 VKL-----ENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 1163 APF----LALGFLIQ-LAKDCPSNKIVMVEAGALEALTKYLS-LGPQDAT-EEAATDLLG 1215
F L FL Q + D + L+ L Y + D E +L
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 1216 ILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALE 1256
L E S + + ++ L A K ++
Sbjct: 551 FLPKIEEN-LICSKYTDLLRI--ALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 7e-19
Identities = 117/754 (15%), Positives = 200/754 (26%), Gaps = 303/754 (40%)
Query: 1103 ADADVQDLLDL------SEEF-ALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLK 1155
+ D +D+ D+ EE ++ D V R+ + + ++L
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKFVEEVL- 87
Query: 1156 PIPDRPGAPFLALGFLIQLAKDC--PSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
R FL + + PS M Y+ + D
Sbjct: 88 ----RINYKFLM----SPIKTEQRQPSMMTRM-----------YIE-----QRDRLYND- 122
Query: 1214 LGILFSSAEIRRHESAFA---AVSQL-----VAVLRLGGRGARYSAAK---ALESLFSAD 1262
+F+ + R + A+ +L V + + G G K AL+ S
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYK 175
Query: 1263 ------------HIRNAESARQAVQPLVEILN-------------TGLEREQHAAIAALV 1297
+++N S ++ L ++L + ++ H+ A L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1298 RLLSENP-SRALAV-ADVE----MNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIR 1351
RLL P L V +V+ NA ++ C+IL + TR +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-----------------LT---TRFK 275
Query: 1352 STVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGR 1411
VT+F L AA I L
Sbjct: 276 Q---------------VTDF----------------------LSAATTTHISLDHHSMT- 297
Query: 1412 NYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEA----PDFLCSAFAELLRI 1467
L ++L L K L+ D+ E P S AE +R
Sbjct: 298 ---LTPDEVKSL--LLK-----YLDC-------RPQDLPREVLTTNP-RRLSIIAESIRD 339
Query: 1468 LTNNAGIAKGPSAAKVVEPLFLLLTRSEF----GPDGQHSALQVLVNILEHPQCRADY-S 1522
+ D + ++ +N+LE + R +
Sbjct: 340 GLA----------------------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 1523 LTSHQAIEP---LIP--LL-----DSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGP 1572
L ++ P IP LL D V + +L + L+E K P +
Sbjct: 378 L----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTI--- 426
Query: 1573 LIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA----------DPS 1622
I + + + NE L + I+ D
Sbjct: 427 -------SIPSIYLE-------LKVKLENE-------YALHRSIVDHYNIPKTFDSDDLI 465
Query: 1623 LP------------HALWESAASVLSSILQFSSEF----YLEVPVAVLVRLLRSGSEGTV 1666
P H + F F +LE ++ +
Sbjct: 466 PPYLDQYFYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLE------QKIRHDSTAWNA 516
Query: 1667 IGS-LNALLVLE------SDDGTSAEAMAESGAIEALLELLRSHQCEETAAR-----LLE 1714
GS LN L L+ D+ E + + A+L+ L + EE LL
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERL-----VNAILDFL--PKIEENLICSKYTDLLR 569
Query: 1715 VLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQ 1748
+ L + Q Q+
Sbjct: 570 IALMA--------------EDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-13
Identities = 110/707 (15%), Positives = 206/707 (29%), Gaps = 215/707 (30%)
Query: 1212 DLLGILFSSAE---IRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAE 1268
D+ + S E I + A + +L L K +E + ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLRINYKFLMS 96
Query: 1269 SAR-QAVQPLVEILNTGLEREQHAAIAALVRLLSENPS-RALAVADVEMNAVDVLCRILS 1326
+ + QP + T + EQ RL ++N V+ ++ L + L
Sbjct: 97 PIKTEQRQP---SMMTRMYIEQRD------RLYNDNQVFAKYNVSRLQP--YLKLRQAL- 144
Query: 1327 SNCSMELK-GDAAELCGVL-FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK 1384
+EL+ + GVL G ++ VA C + V +D
Sbjct: 145 ----LELRPAKNVLIDGVLGSG----KTWVALDVC--------------LSYKVQCKMDF 182
Query: 1385 LV----------DDEQLAELVAAHGAVIP--LVGLLYGRNYMLH-EAISRALVKL--GKD 1429
+ + L L + P + N L +I L +L K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 1430 RPSCKLEMVKAGVIESVLD------ILHEAPDFLCSAFAELLRIL--TNNAGIAKGPSAA 1481
+C L VL A + C +IL T + SAA
Sbjct: 243 YENCLL----------VLLNVQNAKAW-NAFNLSC-------KILLTTRFKQVTDFLSAA 284
Query: 1482 KV----VEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQA--IEPLIPL 1535
++ + LT E +L+ L+ CR L + P
Sbjct: 285 TTTHISLDHHSMTLTPDE--------VKSLLLKYLD---CRPQ-DL-PREVLTTNPR--- 328
Query: 1536 LDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1595
+ +A + L + + + L ++ S +++L+
Sbjct: 329 ------RLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESSLNVLE---------- 367
Query: 1596 ALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLV 1655
P E K LS + +P +LS ++ F + V+
Sbjct: 368 ----PAEYRKM--FDRLS--VFPPSAHIP-------TILLS-LIWFDVIK--SDVMVVVN 409
Query: 1656 RLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETA--ARLL 1713
+L + L+ + + T + I ++ L+ E A ++
Sbjct: 410 KLHKYS-----------LVEKQPKESTIS--------IPSIYLELKVKLENEYALHRSIV 450
Query: 1714 EVLLNNGKIRESKATKSAILPLSQYL-------LDPQTQAQQARLLATLALGDL-FQNEG 1765
+ + + + L QY L ++ L + L D F +
Sbjct: 451 D---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQK 506
Query: 1766 LARSADAVSACRALVNVL-----------EEQPTEEMKVVAICALQNLVMYSRSNKRAVA 1814
+ + A +A +++N L + P E V A+ + + N
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---NAILDFLPKIEEN----- 558
Query: 1815 EAGGVQVVLDLIGSSDPETS-VQAAMFVKLLFSNHTIQEYASSETVR 1860
LI S T ++ A L+ + I E A + R
Sbjct: 559 ----------LICS--KYTDLLRIA----LMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 1e-10
Identities = 97/600 (16%), Positives = 170/600 (28%), Gaps = 207/600 (34%)
Query: 324 CSSPAQ-----VADTL----GALASALMIYDSKAESTKPS----------DPLI-VEQTL 363
S + V + L L S + K E +PS D L Q
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 364 VNQFKPRLPFLVQERTIEALASLYGNPLLSI-------K-------LENSEAKRLLVGLI 409
RL ++ R +AL L + I K + + + + I
Sbjct: 127 AKYNVSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 410 ---TMATNEVQEELVRALLKLCNNEGSLWRAL--------QGREGIQLLISLLGLSSEQQ 458
+ E ++ L KL W + IQ + L L S+
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPY 243
Query: 459 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 518
+ C LL +L N+ N ++
Sbjct: 244 ENC---LL----------------------------------------VLLNVQN-AKAW 259
Query: 519 RA----C---VESADA-VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL- 569
A C + + V L +A I+ L H S T T ++ +LL
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFL-----SAATTTHIS------LDHHSMTLTPDEVKSLLL 308
Query: 570 ------TSDLPESKVYVLDALKSMLSVVS-FSDILREGSA--------ANDAVETMIKI- 613
DLP L + +S ++ +R+G A D + T+I+
Sbjct: 309 KYLDCRPQDLPRE------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 614 LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE-ASRCLA 672
L+ + K L+ +F +I + +W + DV ++ + L
Sbjct: 363 LNVLEPAEYRKMFDRLS-VF--PPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLV 417
Query: 673 A------------IFLSVR-ENREVAAVAR--------------DALSPLVV-------- 697
I+L ++ + A+ R D L P +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 698 ---LAGSPVLEVAEQATCALANLILDSE-VSEKAIAEEIILPATRVLCEGTISGKTLAAA 753
L +E E+ T + LD + +K + A+
Sbjct: 478 GHHLKN---IEHPERMT-LFRMVFLDFRFLEQKIRHDSTAWNAS---------------G 518
Query: 754 AIARLLHSRKI--DYTITDCVNRAGTVLALVSFLESASGSVATSEALDAL--AILSRSGG 809
+I L K Y + V A++ FL ++ S+ D L A+++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 2e-09
Identities = 87/677 (12%), Positives = 185/677 (27%), Gaps = 204/677 (30%)
Query: 901 VNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYR-YTSEEARNG 959
V V++ + C + ++LS E + + R + + ++
Sbjct: 24 VFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWTLLSKQ- 75
Query: 960 GESESSTAVIFGENLAI---WLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQM 1016
E E L I +L+ + + + M DR+ + F +
Sbjct: 76 ---EEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 1017 DYKEDSSIWICALLLAI---LFQDRD--IIRAHATMKAIPILANLLKSEESANRYFAAQA 1071
+ + L + L + R + + K+ + A
Sbjct: 130 N------VSRLQPYLKLRQALLELRPAKNVLIDG-VLGSG------KT------WVALDV 170
Query: 1072 VAS--LVCNGSRGTL-LSVANSGAAGGLI----SLLGCADADVQDLLD------------ 1112
S + C L++ N + ++ LL D + D
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 1113 ---LSEEFALVRYP------DQVALERLFRVEDI--RVGATSRKAIPALVDLLKPIPDRP 1161
L Y V + + ++ ++ T+R + D L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSA--ATT 286
Query: 1162 GAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEA-ATDLLGILFSS 1220
L + + + L KYL PQD E T+
Sbjct: 287 THISLD------------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328
Query: 1221 AEIRRHESAFAAVSQLVAVLRLG-GRGARYSAAKALESLFSADHIRNAESARQAVQPLVE 1279
+S + +R G + H+ N + ++ +
Sbjct: 329 -----------RLSIIAESIRDGLATWDNW------------KHV-NCDKLTTIIESSLN 364
Query: 1280 ILNTGLEREQHAAIAALVRLLSEN---PSRALAV------ADVEMNAVDVLCR---ILSS 1327
+L R+ ++ + + P+ L++ M V+ L + +
Sbjct: 365 VLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 1328 NCS---------MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSP----- 1373
+ELK + + I + + + P
Sbjct: 421 PKESTISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDS------DDLIPPYLDQ 471
Query: 1374 --AQHSVVRALDKLVDDEQLAEL--------------------VAAHGAVIPLVGLLYGR 1411
H + L + E++ A G+++ + L +
Sbjct: 472 YFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--K 528
Query: 1412 NYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE-APDFLCSAFAELLRI--L 1468
Y + I + P K E ++ ++LD L + + +CS + +LLRI +
Sbjct: 529 FYKPY--IC-------DNDP--KYER----LVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 1469 TNNAGIAKGPSAAKVVE 1485
+ I + A K V+
Sbjct: 574 AEDEAIFE--EAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-09
Identities = 66/435 (15%), Positives = 132/435 (30%), Gaps = 120/435 (27%)
Query: 1698 ELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDP-QTQAQQARLLATLA 1756
++ S RL LL+ + K + + ++L+ P +T+ +Q ++ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 1757 LGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEA 1816
+ Q + L + NV QP +++ AL L R K
Sbjct: 113 ---IEQRDRLYNDNQVFAK----YNVSRLQPYLKLRQ----ALLEL----RPAKN----- 152
Query: 1817 GGVQVVLD-LIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITAAIEKELWAT-G 1874
V++D ++GS + A ++ +Q + I W
Sbjct: 153 ----VLIDGVLGSG---KTWVALDVCL----SYKVQCKMDFK----I-------FWLNLK 190
Query: 1875 TVN--EEYLKALNALFNNF-PRLRATEPATLSIPHLVTALKTGSEATQEAAL--DALFLL 1929
N E L+ L L P + + +I + +++ ++ + L +L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 1930 RQAWSA---------CPAEV-SKAQSVA-AADAIPLLQYLIQSGPPRF--QEKAEFLLQC 1976
+A C + ++ + V A + E LL+
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 1977 L---PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVST----GPNPEWEESF 2029
L P L P N PR+ I++ G W+
Sbjct: 311 LDCRPQDL----------------PREVLT---TN--PRRLSIIAESIRDGLA-TWDN-- 346
Query: 2030 AWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEY----TLLPESKS 2085
W H++C + + +SS + R + ++ P S
Sbjct: 347 -W----------KHVNCDKLTTIIESSLNVLEPAEYR---------KMFDRLSVFPPSAH 386
Query: 2086 GPSRNLEIEFLWSNK 2100
P+ L + +W +
Sbjct: 387 IPTILLSL--IWFDV 399
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 87.8 bits (216), Expect = 3e-17
Identities = 135/924 (14%), Positives = 280/924 (30%), Gaps = 85/924 (9%)
Query: 1014 TQMDYKEDSSIWICAL-LLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAV 1072
+ + +ED S+ + AL ++A + + + + + L L S A R A+
Sbjct: 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199
Query: 1073 ASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLF 1132
LV + + + + L ++ + R Q + +
Sbjct: 200 GHLVMSCGNIVFVDLIE----------------HLLSELSKNDSMSTTRTYIQ-CIAAIS 242
Query: 1133 RVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALE 1192
R R+G K IP +V D + + CP V +
Sbjct: 243 RQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESFVRRCPKEVYPHVST-IIN 299
Query: 1193 ALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAA 1252
KYL+ P ++ D + + S ++ R +AA
Sbjct: 300 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV-----RRAAA 354
Query: 1253 KALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVAD 1312
K L+++ S H E + L+ E + A + LL + + D
Sbjct: 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 414
Query: 1313 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1372
+ + + + + TR V L L
Sbjct: 415 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 474
Query: 1373 PAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1432
++ +L+ L + VI + + + + +G
Sbjct: 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG----- 529
Query: 1433 CKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492
+ I EA +++R L + P + L
Sbjct: 530 -----------DPFYKITSEALLV-TQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLK 577
Query: 1493 RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1552
++ + + A+ + I+ + L ++ + L + + + L
Sbjct: 578 AADIDQEVKERAISCMGQIICNLGDNLGSDL--PNTLQIFLERLKNEITRLTTV-KALTL 634
Query: 1553 HLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGG---V 1609
++ PV + + L L L+ + AL + + + + +
Sbjct: 635 IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694
Query: 1610 TELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGS 1669
EL +I ++D + + A S L+++ + ++ ++L L+ + G
Sbjct: 695 DELPPLISESDMH----VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQG- 749
Query: 1670 LNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGK-------I 1722
AL + + LL +L ++ A + +
Sbjct: 750 -GALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTR 808
Query: 1723 RESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNV 1782
K + + Q + + ++ RLLA L+LG++ + L+ + S +
Sbjct: 809 ACPKEGPAVVGQFIQDVKNSRST-DSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFS- 866
Query: 1783 LEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVK 1842
P+EE+K A AL ++ + + + VL I S +
Sbjct: 867 ---SPSEEVKSAASYALGSISVGNLPEY--------LPFVLQEITSQPKRQYL------- 908
Query: 1843 LLFSNHTIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATL 1902
LL S I AS ++ I L EE + + A +L +P T
Sbjct: 909 LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC--LGKLTLIDPET- 965
Query: 1903 SIPHLVTALKTGSEATQEAALDAL 1926
+P L L +GS + + + A+
Sbjct: 966 LLPRLKGYLISGSSYARSSVVTAV 989
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 52.0 bits (123), Expect = 2e-06
Identities = 85/600 (14%), Positives = 186/600 (31%), Gaps = 58/600 (9%)
Query: 15 IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSL------LRSGSL 68
I L SSS K +L L ++ + PV+ + + S +L
Sbjct: 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEAL 540
Query: 69 AVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ-----IAAAKTIYAVS 123
V Q V+ L + + + + LK++ + + I+ I
Sbjct: 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 124 QGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 183
+ + + + E+LKN + V L A L
Sbjct: 601 GDNLGSDLPN-------TLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVL----- 648
Query: 184 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATK--QLLKLLGSGNE 241
+ + L + + + +A L+ + + + AA L L S ++
Sbjct: 649 ---GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705
Query: 242 ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMC 301
V A L +L+ + +I+G + + +I +P + + +
Sbjct: 706 MHVSQMAISFLTTLAKVYPSSLSKISG-SILNELIGLVRSPLLQGGALSAMLDFFQALVV 764
Query: 302 ALANISGG--LSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP--- 356
N G L +++ S + + Q ++ +AL K
Sbjct: 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQD 824
Query: 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE-------AKRLLVGLI 409
+ ++ + L L + L+ + ++ +S A L +
Sbjct: 825 VKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSIS 884
Query: 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 469
E +++ + + L +L+ + + + + LL
Sbjct: 885 VGNLPEYLPFVLQEITSQPKRQYLLLHSLKEI----ISSASVVGLKPYVENIWALLLKHC 940
Query: 470 SNENDDSKWAITAAGG----------IPPLVQILESGSAKAKEDSASILRNLC-NHSEDI 518
+ ++ + G +P L L SGS+ A+ + ++ +H + I
Sbjct: 941 ECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI 1000
Query: 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 578
++ + + L L++ N + +A T N H + L +L E+KV
Sbjct: 1001 DPLLK--NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKV 1058
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-13
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 5/165 (3%)
Query: 444 IQLLISLLGLSS--EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 501
++ +S+L + + + + +++ + GI L+Q+L+ + +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANG-KEIAAKTLNHLIHKSDTA 560
LRNL D + V + VP LL +LK K+ L +L
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 561 TISQLTAL--LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAA 603
+ AL LT ++ + + + DI +
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGC 174
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 3/157 (1%)
Query: 414 NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEN 473
+ C + + + GI L+ LL + +E Q L L E+
Sbjct: 24 PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83
Query: 474 DDSKWAITAAGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA-- 530
+D+K + G+P L+Q+L ++ + K+ +L NL ++ + + A
Sbjct: 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTEN 143
Query: 531 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA 567
++ A L+ I + T + +++
Sbjct: 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 73/278 (26%)
Query: 50 GSHSQAVPVLVSLLRSGS--LAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKS 106
+ VS+L + + AAT + C + E R +V I LL LLK
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63
Query: 107 SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGA 166
+ + Q A GA
Sbjct: 64 QNEDVQRAVC------------------------------------------------GA 75
Query: 167 LRNLSTSTEGFWAATVQAGGIDILVKLLTLGQS-STQAHVCFLLACMMEEDVSVCSRVLA 225
LRNL + G+ L+++L + T+ + LL + D ++
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK--LKNLMI 133
Query: 226 ADATKQLLKLL---------------GSGNEASVRAEAAGALKSLSDHCKDARREIAGSN 270
+A L + + + + G L+++S D R+ + +
Sbjct: 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD 193
Query: 271 G-IPAMINATIAPSKEFMQGEYAQALQENAMCALANIS 307
G I ++++ + + EN +C L N+S
Sbjct: 194 GLIDSLVHYVRGTIAD---YQPDDKATENCVCILHNLS 228
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-11
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Query: 153 LKSGNVVDNLLTGA---LRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209
L++ +++ + ++ A +++ Q GI L++LL + Q VC L
Sbjct: 17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGAL 76
Query: 210 ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS 269
++ ED V + +LL++L + + + G L +LS + D + + +
Sbjct: 77 RNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMIT 134
Query: 270 NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISS 316
+ + I P + +G+Y +A N++G L N+ S+
Sbjct: 135 EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 4e-10
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 24/197 (12%)
Query: 15 IEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQA 74
+ L + + + A V + + L+ LL+ + V+
Sbjct: 14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAV 72
Query: 75 ATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEG-QIAAAKTIYAVSQGGAKDYVG 132
L +L E+ + +++V +P LL +LK + + ++ +S
Sbjct: 73 CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL---- 128
Query: 133 SKIFSTEGVVPVLWEQL--------------KNGLKSGNVVDNLLTGALRNLSTSTEGFW 178
K + L E + NGL ++ N +TG LRN+S++
Sbjct: 129 -KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN-VTGCLRNMSSAGADGR 186
Query: 179 AATVQAGG-IDILVKLL 194
A + G ID LV +
Sbjct: 187 KAMRRCDGLIDSLVHYV 203
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 19/196 (9%)
Query: 374 LVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG 432
+ + ++ L+ L+ + +VQ + AL L +
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 433 SLWRALQGREGIQLLISLLGLSSEQQ-QECSVALLCLLSNENDDSKWAITAAGGIPPLVQ 491
+ G+ L+ +L + + + ++ LL LS+ ND K + +
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITEALLTLTEN 143
Query: 492 ILESGSAKAKEDS---------------ASILRNLCNHSEDIRACV-ESADAVPALLWLL 535
I+ S + D LRN+ + D R + + +L+ +
Sbjct: 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203
Query: 536 KNGSANGKEIAAKTLN 551
+ A+ + T N
Sbjct: 204 RGTIADYQPDDKATEN 219
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 17/197 (8%)
Query: 1147 IPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDAT 1206
+ V +L+ P A F+ + + + + L + L + +D
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 1207 EEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIR 1265
L ++F + + + V +L+ VL+ + L +L S D ++
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 1266 NAESARQAVQPLVEILNTGL---------------EREQHAAIAALVRLLSENPSRALAV 1310
N + I+ + L + S A+
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189
Query: 1311 ADVEMNAVDVLCRILSS 1327
+ +D L +
Sbjct: 190 RRCD-GLIDSLVHYVRG 205
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 6e-07
Identities = 27/191 (14%), Positives = 66/191 (34%), Gaps = 32/191 (16%)
Query: 1651 VAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAA 1710
+ L++LL+ +E AL L +D + +AE + LL++L+ + ET
Sbjct: 54 ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKK 113
Query: 1711 RLLEVLLN--NGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLAR 1768
++ +L N + ++ A+L L++ ++ P + + L D
Sbjct: 114 QITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF-------- 165
Query: 1769 SADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGG-VQVVLDLIG 1827
++ L+N+ ++A+ G + ++ +
Sbjct: 166 ---------------------DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
Query: 1828 SSDPETSVQAA 1838
+ +
Sbjct: 205 GTIADYQPDDK 215
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 33/229 (14%)
Query: 1479 SAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNI-LEHPQCRADYSLTSHQAIEPLIPLLD 1537
+E +L P +A + + + + R + + I L+ LL
Sbjct: 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARK--RVNQLRGILKLLQLLK 62
Query: 1538 SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQ-VIGPLIRVLGSGIHI-LQQRAVKALVSI 1595
VQ+ L +L+ E+ K V + + L++VL + +++ L ++
Sbjct: 63 VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122
Query: 1596 ALTWPN-EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVL 1654
+ + + L++ I+ +P + W P
Sbjct: 123 SSNDKLKNLMITEALLTLTENII-----IPFSGW---------------------PEGDY 156
Query: 1655 VRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAE-SGAIEALLELLRS 1702
+ L + S +AM G I++L+ +R
Sbjct: 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 27/167 (16%)
Query: 375 VQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATN-EVQEELVRALLKLCNNEG 432
VQ AL +L + + +++ L+ ++ + E ++++ L L +N+
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 433 SLWRALQGREGIQLLISLL----------------GLSSEQQQECSVALLCLLSNENDDS 476
+ L E + L + GL L +S+ D
Sbjct: 128 L--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185
Query: 477 KWAITAAGG-IPPLVQILESGSAKAKEDSAS------ILRNLCNHSE 516
+ A+ G I LV + A + D + IL NL E
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 6/148 (4%)
Query: 1741 DPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQ 1800
P + A + + + L+ +L+ E+++ AL+
Sbjct: 23 LPSRISAAATFIQHECFQK-SEARKRVNQLRGI---LKLLQLLKV-QNEDVQRAVCGALR 77
Query: 1801 NLVMYSRSNKRAVAEAGGVQVVLDLIGSS-DPETSVQAAMFVKLLFSNHTIQEYASSETV 1859
NLV NK VAE GV +L ++ + D ET Q + L SN ++ +E +
Sbjct: 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEAL 137
Query: 1860 RAITAAIEKELWATGTVNEEYLKALNAL 1887
+T I + L
Sbjct: 138 LTLTENIIIPFSGWPEGDYPKANGLLDF 165
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 5/167 (2%)
Query: 648 TLWSVMKLLDVGSECILV--EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE 705
TL + +L+ A+ + E R+ R + L+ L +
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNED 67
Query: 706 VAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTL--AAAAIARLLHSRK 763
V AL NL+ + ++ +AE +P + + T +T + L + K
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 764 IDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGA 810
+ + T ++ F G + L I G
Sbjct: 128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGC 174
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 1326 SSNCSMELKGDAA-ELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDK 1384
+ + AA + F + R V R + L+ LL + Q +V AL
Sbjct: 19 ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRN 78
Query: 1385 L-VDDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGV 1442
L +D VA V L+ +L R+ + I+ L L + K M+ +
Sbjct: 79 LVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITEAL 137
Query: 1443 IESVLDILHEAPDFLCSAFAEL-----LRILTNNAGI 1474
+ +I+ + + + I N G
Sbjct: 138 LTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGC 174
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP 2036
GTL V++ + + N Y +LT + G PEW E+F F +
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF--IFTVS 67
Query: 2037 PKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSR---NLE 2092
+L +K + G+ TI ++ V + G++ T K + +
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI--PPTAYNVVKDEEYKGEIWVA 125
Query: 2093 IEFL 2096
+ F
Sbjct: 126 LSFK 129
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 8e-13
Identities = 38/289 (13%), Positives = 96/289 (33%), Gaps = 31/289 (10%)
Query: 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEG 111
++ + L + + S K Q ++ ++ + ++ G + +L L + G
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIG 514
Query: 112 QIAAAKTIYAVSQGG--AKDYVGSKIFSTEGVVPVLWEQLK-------NGLKSGNVVDNL 162
+ A+++ + K +S +P L+E L N L + +
Sbjct: 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574
Query: 163 LT----GALRNLSTSTEGFWAATVQ-----AGGIDILVKLLTLGQSSTQAHVCFLLACMM 213
AL NL++S + + L+ Q L++ MM
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634
Query: 214 EEDVSVCSRVLAADATKQ------LLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA 267
+++ ++ + + L+KLL + S RA A +++ +E+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA-VAAIFANIATTIPLIAKELL 693
Query: 268 GSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISS 316
+ A + ++ L++ + + + + ++
Sbjct: 694 TKKELIENAIQVFADQIDDIE------LRQRLLMLFFGLFEVIPDNGTN 736
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-06
Identities = 41/266 (15%), Positives = 86/266 (32%), Gaps = 37/266 (13%)
Query: 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG 538
I I L + + + S K+ I+ N+ I + AV +L L N
Sbjct: 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIILEYLANK 510
Query: 539 SANGKEI---AAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595
G+ I + L ++ ++ I K L+A+ + ++ S
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIF------------KKYSALNAIPFLFELLPRST 558
Query: 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKL 655
+ + ND + + T S+ +++ + ++ K WS ++
Sbjct: 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSET-----SDGEEVCKHIVSTKVYWSTIEN 613
Query: 656 LDVGS---------ECI--LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL 704
L + E I ++ +AA F ++ + + + LV L +
Sbjct: 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ-----SLRNFNILVKLLQLSDV 668
Query: 705 EVAEQATCALANLILDSEVSEKAIAE 730
E AN+ + K +
Sbjct: 669 ESQRAVAAIFANIATTIPLIAKELLT 694
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 8e-12
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 1978 PGTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEI 2035
L + + K++ PS Y ++T+ ++T+ + +P+W++ + +
Sbjct: 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS-KKTEKCNNTNSPKWKQPL--TVIV 91
Query: 2036 PPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLE 2092
P KLH + + G + I + + E ++ G E
Sbjct: 92 TP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTE 148
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-12
Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 1979 GTLVVIIKRGNN-MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSF 2033
L++ I G + + G Y K++L ++T+ V +P + E F F
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHF--FF 84
Query: 2034 EIPP--KGQKLHISCKNKSKMGKSSF--GKVTIQIDRVVMLG-AVAGEYTLLPESKSGPS 2088
+ ++L ++ N++ + S G ++ + ++ ++G Y LL E G +
Sbjct: 85 PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL-GRT 143
Query: 2089 RNLEI 2093
++L++
Sbjct: 144 KHLKV 148
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 10/127 (7%)
Query: 1979 GTLVVIIKRGNNM-KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP 2037
G L VI++ +N+ K G P + + ++TK V NP W E + P
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEK-KKTKKVDNELNPVWNEILEFDLRGIP 65
Query: 2038 --KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLP--ESKSGPSR--- 2089
L I K+ +G++ G T+ + + + + Y L+ K +
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATI 125
Query: 2090 NLEIEFL 2096
+L I +
Sbjct: 126 DLVIGYD 132
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 1971 EFLLQCLPGTLVVIIKRGNN---MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNP 2023
+ ++ G L V + R + S P+ Y K+ L ++T+I +P
Sbjct: 22 QIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDP 81
Query: 2024 EWEESFAWSFEIPPKGQKLHIS-CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLP 2081
+++S F+ P+G+ L + + +M F G I ++ + + V G Y L P
Sbjct: 82 LYQQSL--VFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139
Query: 2082 ES 2083
S
Sbjct: 140 PS 141
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 1979 GTLVVIIKRGNNM--KQSVG--NPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
G L V + + ++ G +P +C L LGN QT V NPEW + F F
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDP--FCLLELGNDR-LQTHTVYKNLNPEWNKVFT--FP 67
Query: 2035 IPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSR---N 2090
I L ++ ++ F GKV I + + Y L + +
Sbjct: 68 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR--DGQPNCYVLKNKDLEQAFKGVIY 125
Query: 2091 LEIEFLW 2097
LE++ ++
Sbjct: 126 LEMDLIY 132
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 3e-10
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 1986 KRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHIS 2045
+ + Y L + ++ QT +P W + F ++ G+K+ ++
Sbjct: 26 RDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEF--VTDVCN-GRKIELA 82
Query: 2046 CKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGE--YTLLPESKSGPSRNLEIEFLWSN 2099
+ + +G F TIQ + ++ G+ E L PE K + I+ S+
Sbjct: 83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGKV----YVIIDLSGSS 135
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTL---GNTPPRQTKIVSTGPNPEWEESFAWSFEI 2035
L V G Y + ++ + QT + + WEE +
Sbjct: 26 AELFVTRLEAVTSNHD-GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGL--VLPL 82
Query: 2036 PP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKS 2085
L ++ + + + S G++ + +D + A L S
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 1979 GTLVVIIKRGNN---MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAW 2031
+LVV +K + ++ + Y K L R+T I NP ++E+
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETL-- 80
Query: 2032 SFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGP 2087
+EIP + L S + + G+++F G+ IQ+D + + L + +
Sbjct: 81 RYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAES 140
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 5e-10
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 17/141 (12%)
Query: 1960 QSGPPRFQEKAEFLLQCLPGTLVVII------------KRGNNMKQSVGNPSVYCKLTLG 2007
S + G L V I R + K+ Y +++
Sbjct: 10 HSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69
Query: 2008 NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDR 2066
QT P + E F + G L ++ +++ +G F T+Q
Sbjct: 70 QVRVGQTSTKQKTNKPTYNEEF--CANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQE 126
Query: 2067 VVMLGAVAGEYTL-LPESKSG 2086
++ + + + G
Sbjct: 127 LLRTTGASDTFEGWVDLEPEG 147
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 7e-10
Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNP-EWEESFAWSFEIP 2036
L+V +K + ++ + K+T ++++ + +++E+F W
Sbjct: 20 HMALIVHLKTVSELRGR-ADR--IAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASS 75
Query: 2037 P-KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIE 2094
+ + L I N SK+ + G + + +VV V TL+ ++ + +L +E
Sbjct: 76 IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSME 135
Query: 2095 FLW 2097
+
Sbjct: 136 VRY 138
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 7e-10
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 1974 LQCLPGTLVVIIKRGNNM--KQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEE 2027
L+V+++ N+ G Y KL L + ++TK + NPEW E
Sbjct: 26 AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 85
Query: 2028 SFAWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESK 2084
+F + + K ++L + + ++ F G ++ I + V G + LL + +
Sbjct: 86 TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEE 142
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-10
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 1971 EFLLQCLPGTLVVIIKRGNN-MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEW 2025
+ + GTL +++ + + + +P+ Y K L T R+TKI NP +
Sbjct: 12 KLSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTF 71
Query: 2026 EESFAWSFEIPP----KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLL 2080
E + + ++L +S + + ++ F G +T+ + + Y L
Sbjct: 72 NEML--VYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
Query: 2081 PES 2083
+
Sbjct: 130 AAT 132
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 1972 FLLQCLP--GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPP----RQTKIVSTGPNP 2023
F L+ +P G L V+I N+K G Y K+ L ++T I NP
Sbjct: 16 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP 75
Query: 2024 EWEESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVV--------MLG 2071
+ ESF SFE+P + ++ ++ + K+GK+ GKV + + ML
Sbjct: 76 YYNESF--SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLA 133
Query: 2072 ----AVAGEYTLLPESK 2084
+A +TL E +
Sbjct: 134 NPRRPIAQWHTLQVEEE 150
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 7e-09
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 22/135 (16%)
Query: 1971 EFLLQCLPGTLVVIIKRGNNM--KQSVGNPSVYCKLTL-------------GNTPPRQTK 2015
+ + G L++ I + N+ + + G + K+ L R+TK
Sbjct: 10 QLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTK 69
Query: 2016 IVSTGPNPEWEESFAWSFEIPP----KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVML 2070
V NPEW ++ ++ + L ++ + + + F G+V I + L
Sbjct: 70 YVQKSLNPEWNQTV--IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 2071 GAVAGEYTLLPESKS 2085
Y L +++S
Sbjct: 128 DNTPRWYPLKEQTES 142
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-09
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 1972 FLLQCLP--GTLVVIIKRGNNMK--QSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNP 2023
L P +++V I + N+K G Y K+ L ++T NP
Sbjct: 7 LSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP 66
Query: 2024 EWEESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTI 2062
+ ESF +F+IP + + I+ +K K+ ++ GK+ +
Sbjct: 67 IFNESF--AFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 107
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
L+V I + + G Y K+ L +TK+ NP + E F +F+
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF--TFK 76
Query: 2035 IPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRN 2090
+P G+ L ++ + + K G+ + ++ V L K +
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKL 136
Query: 2091 LEIEF 2095
+I F
Sbjct: 137 GDICF 141
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 1974 LQCLP--GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPR----QTKIVSTGPNPEW 2025
L+ +P G L V+I N+K G Y K+ L R +T I NP +
Sbjct: 143 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 202
Query: 2026 EESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTI 2062
ESF SFE+P + ++ ++ + K+GK+ GKV +
Sbjct: 203 NESF--SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 8e-09
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
L+V I + G Y K+ L +TK+ NP + E F +F+
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF--TFK 99
Query: 2035 IPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPE 2082
+P G+ L ++ + + K G+ + ++ V L
Sbjct: 100 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 1981 LVVIIKRGNNMKQS-----VGNPSVYCKLTLGNTPPR--QTKIVSTGPNPEWEESFAWSF 2033
V++ R + + + P Y +L + TP +T+ + NP W E+F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE--F 62
Query: 2034 EIP-PKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLE 2092
+ + L I+ + + + + G T + + + + ++ LE
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM----VLE 118
Query: 2093 IEFLWSN 2099
+ ++
Sbjct: 119 MSLEVAS 125
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
LVV I + ++ K S G Y K+ L QTK+ NP + E+F F
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF--QFS 77
Query: 2035 IPP---KGQKLHISCKNKSKMGKSSF-GKVTIQ 2063
+P +KLH S + + + G+V +
Sbjct: 78 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 1960 QSGPPRFQEKAEFLLQCLP--GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPR--- 2012
+ F L LP G L V I + +N+K G Y K +L + R
Sbjct: 131 GGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKK 190
Query: 2013 -QTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTI 2062
+T I NP + E+ F++ P + L I+ + +G + G +
Sbjct: 191 RKTSIKKNTLNPTYNEAL--VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 1978 PGTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEI 2035
+ + + + K G+ Y + +G T ++TK + NP WEE+F FE
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK-KRTKTIYGNLNPVWEENF--HFEC 72
Query: 2036 PPKGQKLHISC-----------KNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPES 2083
++ + K + K F G+ I++ + G + Y L +
Sbjct: 73 HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNL--DK 128
Query: 2084 KSGPSR 2089
++ S
Sbjct: 129 RTDKSA 134
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 1972 FLLQCLP--GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPP----RQTKIVSTGPNP 2023
L TL V++ + ++ G Y K+ L + ++T + PN
Sbjct: 21 VSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA 80
Query: 2024 EWEESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTI 2062
+ E F F+IP + + + + ++ G++ +
Sbjct: 81 VFNELF--VFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
Query: 1979 GTLVVIIKRGNN---MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAW 2031
L+V++ N + +P Y ++ L + R+T + NP +++SF
Sbjct: 24 NKLIVVVHACRNLIAFSEDGSDP--YVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSF-- 79
Query: 2032 SFEIPP---KGQKLHISCKNKSKMGKSSF---GKVTIQIDRVVMLGAVAGEYTLLPESKS 2085
F + + + L ++ KN GKV + + + Y L +S
Sbjct: 80 DFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGP 139
Query: 2086 G 2086
Sbjct: 140 S 140
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 1979 GTLVVIIKRGNNM--KQSVGN--PSVYCKLTLGNTPP-----RQTKIVSTGPNPEWEESF 2029
+ V + G + K +G P Y ++TL + QTK + NP+W E
Sbjct: 20 RIVRVRVIAGIGLAKKDILGASDP--YVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 2030 AWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAG------EYTLLPE 2082
F + P+ +L +++++ + F G+V + + + ++ L P
Sbjct: 78 L--FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR 135
Query: 2083 SKSGPSR-NLEIEFLW 2097
S + L ++ +
Sbjct: 136 SHKSRVKGYLRLKMTY 151
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 23/141 (16%)
Query: 1979 GTLVVIIKRGNNM--KQSVGN--PSVYCKLTLGNTPP-----RQTKIVSTGPNPEWEESF 2029
+ V + G + K +G P Y ++TL + QTK + NP+W E
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDP--YVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 2030 AWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVV------MLGAVAGEYTLLPE 2082
F + P+ ++ +++++ + F G+V + + + ++ L P
Sbjct: 66 --LFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 2083 SKSGPSR---NLEIEFLWSNK 2100
S + L++ +L N
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNG 144
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
L+V I + G Y K+ L +TK+ NP + E F +F+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF--TFK 91
Query: 2035 IPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLL 2080
+P G+ L ++ + + K G+ + ++ V L
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 1e-07
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPK 2038
L V +K+ + + Y L + N + T I G P WE+ F FEI
Sbjct: 5 SLLCVGVKKAKFDG-AQEKFNTYVTLKVQNV--KSTTIAVRGSQPSWEQDFM--FEINRL 59
Query: 2039 GQKLHISCKNKSKMGKSSFGKVTIQIDRV 2067
L + NK + + G V I + +
Sbjct: 60 DLGLTVEVWNKGLIWDTMVGTVWIPLRTI 88
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWS 2032
L+V I + ++ + Y K+ + R+TK V P+W ++F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF--I 78
Query: 2033 FEIPP----KGQKLHISCKN--KSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKS 2085
+ + + L I+ + + + +S F G++ I+++ +L Y L
Sbjct: 79 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-ALLDDEPHWYKLQTHDSG 137
Query: 2086 GPS 2088
S
Sbjct: 138 PSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
TL V I + K G + K+ L +TK+ NP W E+F FE
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF--LFE 83
Query: 2035 IPP----KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKS 2085
P + L++ + + ++ G+V+I +++V + L P S
Sbjct: 84 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPS 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 1979 GTLVVIIKRGNN---------MKQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEE 2027
L V + + +Q + + + Y K+ L +QT + P +EE
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 2028 SFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPES 2083
+ +FEIP + + L ++ + K + GKV++ + V ++ L+P
Sbjct: 86 RY--TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG 143
Query: 2084 KS 2085
S
Sbjct: 144 PS 145
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 2e-07
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 1979 GTLVVIIKRGNNMKQS-----VGNPSVYCKLTLGNTP--PRQTKIVSTGPNPEWEESFAW 2031
V++ R + + + P Y +L + TP ++T+ + NP W E+F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE- 76
Query: 2032 SFEIPPK-GQKLHISCKNKSKMGKSSFGKVTIQIDRVVM 2069
F + P L I+ + + + + G T + + +
Sbjct: 77 -FILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKV 114
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-07
Identities = 81/482 (16%), Positives = 152/482 (31%), Gaps = 74/482 (15%)
Query: 1127 ALERLF-RVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVM 1185
+++L RV + R A+ AL L K G A+ LI + + S+ ++
Sbjct: 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ--AMEHLIHVLQTDRSDSEII 79
Query: 1186 VEAGALEALTKYLSLGPQDATEEA---ATDLLGILFSSAEIRRHESAFAAVSQLVAVLRL 1242
AL+ L +S ++ EE ++ LG F+ I++ E V+ L+++L
Sbjct: 80 --GYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQE----NVTLLLSLLEE 133
Query: 1243 GGRGARYSAAKALESLFSADHIRNAE---SARQAVQPLVEILNTGLEREQHAAIAALVRL 1299
R+ K L SL + + + V L+++L E ++ + L L
Sbjct: 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL 193
Query: 1300 LSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELC-----GVLFGNTRIRSTV 1354
N + VA NA + L I++ + + G E C +L N ++
Sbjct: 194 TRSNGAIQKIVA--FENAFERLLDIITEEGNSD-GGIVVEDCLILLQNLLKNNNSNQNFF 250
Query: 1355 AAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYM 1414
++ + + S + V ++ LV +L N
Sbjct: 251 KEGSYIQRMKPWFEVGDENSGWSAQK--------------VTNLHLMLQLVRVLVSPN-- 294
Query: 1415 LHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL--HEAP-DFLCSAFAELLRILTNN 1471
SC+ M + G+++ + IL P D L + ++
Sbjct: 295 ----------NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC 344
Query: 1472 AGI--------AKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH--------- 1514
A + L + + + + L L
Sbjct: 345 QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404
Query: 1515 ----PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVI 1570
P T L + AA L+H L E QK+ + + +
Sbjct: 405 STLLPSTIDATGNTVSAGQLLCGGLFSTD-SLSNWCAAVALAHALQENATQKEQLLRVQL 463
Query: 1571 GP 1572
Sbjct: 464 AT 465
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 1979 GTLVVIIKRGNNMK--QSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWS 2032
G L+V I R ++ + G + KL L G +T+I NPE+ E F
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEF--F 94
Query: 2033 FEIPP---KGQKLHISCKNKSKMGKSSF-GKVTI 2062
++I + L IS + + + G +
Sbjct: 95 YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL 128
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 1979 GTLVVIIKRGNN---MKQSVGNPSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSF 2033
VV IK M + Y K+T+ +T+++ +P ++E+F +
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 2034 EIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRV 2067
IP + LH + + + + G+V I + +
Sbjct: 82 -IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 12/120 (10%)
Query: 1981 LVVIIKRGNNM--KQSVGNPSVYCKLTL-GNTPPRQTKIVSTGPNPEWEESFAWSFEIPP 2037
+ + + N+ K P + K+ + G+ T V +P+W + + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHY--DLYVGK 64
Query: 2038 KGQKLHISC----KNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEI 2093
+ IS K K G G V + + + L Y L K PS +
Sbjct: 65 -TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLK--DTGYQRLDLCKLNPSDTDAV 121
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWS 2032
L+V I + ++ + Y K+ + R+TK V P+W ++F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF--I 75
Query: 2033 FEIPP----KGQKLHISCKN--KSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTL 2079
+ + + L I+ + + + +S F G++ I+++ +L Y L
Sbjct: 76 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-ALLDDEPHWYKL 128
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 1979 GTLVVIIKRGNN--MKQSVGNPSVYCKLTL----GNTPPR-QTKIVSTGPNPEWEESFAW 2031
++I + +N + V ++ + +T +T+ + + E F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF-- 100
Query: 2032 SFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGE-YTLL 2080
+ + L + + G I + V G + Y LL
Sbjct: 101 WVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWS 2032
L I R + S G Y KL L + +TK + NP W E+ +
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 2033 FEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRV 2067
I + + L IS ++ K G + F G+ + ++
Sbjct: 89 G-ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 95/674 (14%), Positives = 189/674 (28%), Gaps = 107/674 (15%)
Query: 1050 IPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQD 1109
I +L + L++E+ R + + ++ + LG + +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLS---------------------TIALALG-VERTRSE 49
Query: 1110 LLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALG 1169
LL L ED L + L L
Sbjct: 50 LLPF--------------LTDTIYDEDE----VLLALAEQLGTFTTLVGGPEYVHCL-LP 90
Query: 1170 FLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESA 1229
L LA + V A+E+L E L+ L SA
Sbjct: 91 PLESLATVEETV----VRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA 146
Query: 1230 FAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQ 1289
+ + +L S D +A + ++L L+ +
Sbjct: 147 CGL---FSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--ELDNVK 201
Query: 1290 HAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1349
I L S+ V + AV+ I +L+ +
Sbjct: 202 SEIIPMFSNLASDE------QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS 255
Query: 1350 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD---EQLAELVAAHGAVIPLVG 1406
R A L + E + +V A L+ D E A +
Sbjct: 256 WRVRYMVADKFTELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313
Query: 1407 LLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLR 1466
N ++ + + + +L D + VK+ L S L
Sbjct: 314 ADCRENVIMSQILP-CIKELVSD----ANQHVKSA---------------LASVIMGLSP 353
Query: 1467 ILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSH 1526
IL + + + PLFL + E P+ + + + L + E S
Sbjct: 354 ILGKDN-------TIEHLLPLFLAQLKDEC-PEVRLNIISNLDCVNEVI----GIRQLSQ 401
Query: 1527 QAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1586
+ ++ L + V+ E + L QL + +++ + L ++ +++
Sbjct: 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLA--GQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1587 RAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQ-FSSEF 1645
A L + + E A + ++ + DP+ H + ++ + + +
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLA--MSGDPNYLH--RMTTLFCINVLSEVCGQDI 515
Query: 1646 YLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQC 1705
+ + ++R+ +L + S ++ +LE L Q
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQDQD 571
Query: 1706 EE---TAARLLEVL 1716
+ A L VL
Sbjct: 572 VDVKYFAQEALTVL 585
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPK 2038
L V +K+ + + Y L + N T I G P WE+ F FEI
Sbjct: 14 SLLCVGVKKAKFDG-AQEKFNTYVTLKVQNV--ESTTIAVRGSQPSWEQDFM--FEINRL 68
Query: 2039 GQKLHISCKNKSKMGKSSFGKVTIQIDRVV-MLGAVAGE-YTLLPESKSG 2086
L + NK + + G V I + + GE TL ++
Sbjct: 69 DLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA 118
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-04
Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 12/283 (4%)
Query: 1789 EEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNH 1848
+ + C L + + + V + SS+ + + K+ S H
Sbjct: 213 SVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVSSEYKACEEKKKQHKMATSFH 272
Query: 1849 TIQEYASSETVRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIPHLV 1908
E + + L+ E++ +L +N P L + + + L+
Sbjct: 273 QTYRERHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSN-PGL--VDYSLEPLHTLL 329
Query: 1909 TALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQE 1968
EA A+ + R W C Q ++ D + +
Sbjct: 330 EEQNPKREAL-RQAISHYIMSRARWQNCSRPCRSGQHKSSHD-----SCQCECQDSKVTN 383
Query: 1969 KAEFLLQCLPGTLVVIIKRGNN-MKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEE 2027
+ Q LVV R + Y K+ G +T +V NP W +
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQE-FRTGVVWNNNNPRWTD 442
Query: 2028 SFAWSFEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVM 2069
+ + G L + + G
Sbjct: 443 KMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSGFH 485
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 4e-04
Identities = 76/590 (12%), Positives = 173/590 (29%), Gaps = 72/590 (12%)
Query: 1436 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE 1495
V + L+ + ++ + + L+ + + + P ++ L LL +
Sbjct: 85 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD---LLPKLCSLLDSED 141
Query: 1496 FGPDGQHSALQVLVNILE--HPQCRADYSLTSHQAIEP-LIPLLDSPAPAVQQLAAELLS 1552
+ A L I E +D + P + +P ++ A ++
Sbjct: 142 --YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVN 199
Query: 1553 HLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTEL 1612
++ I L + G +++ +ALV + + + + +
Sbjct: 200 QFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH--MHNI 257
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFSSEF-----YLEVPVAVLVRLLRSGSEGTVI 1667
+ +LQ + A ++ + +L + VLV ++ S+ +I
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY-SDIDII 316
Query: 1668 GSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRES 1725
+ D T ++ + AL L + + LL+ LL + +
Sbjct: 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376
Query: 1726 KAT-------------------KSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGL 1766
++ I L Q L D + + ++
Sbjct: 377 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436
Query: 1767 ARSAD-----------------AVSACRALVNVLEEQPTEEMKVVAICALQNLV----MY 1805
+AC A LEE+ E+ L LV Y
Sbjct: 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFAT-LEEEACTELVPYLAYILDTLVFAFSKY 495
Query: 1806 SRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITAA 1865
N + +A + + D +G + + L+ + + + +
Sbjct: 496 QHKNLLILYDA--IGTLADSVGHHLNKPEYIQMLMPPLI-----QKWNMLKDEDKDLFPL 548
Query: 1866 IEKELWATGTVNEEYLKALNALFNN-FPRLRATEPATLSIPHLVTALKTGSEATQEAALD 1924
+E + +L ++ ++ T + + + ALD
Sbjct: 549 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608
Query: 1925 ALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLL 1974
L L + + Q VA ++ + L+ +Q P ++ + LL
Sbjct: 609 LLSGLAEGL-----GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL 653
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 1503 SALQVLVNILEHP----QCRADYSL--TSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556
S L + + + +L +A EPL+ L + ++ AA ++ +
Sbjct: 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNF-- 69
Query: 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1596
+D + + PLI++L ++ A ++L I
Sbjct: 70 -----QDE---RAVEPLIKLLEDDSGFVRSGAARSLEQIG 101
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2100 | |||
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.98 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.93 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.93 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.92 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.9 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.88 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.88 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.87 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.86 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.86 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.86 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.85 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.85 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.85 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.8 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.79 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.79 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.77 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.77 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.76 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.75 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.74 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.73 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.7 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.65 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.62 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.57 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.54 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.47 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.45 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.43 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.35 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.26 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.22 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.19 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.19 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.17 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.17 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.15 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 98.99 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 98.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.96 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 98.92 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 98.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.77 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 98.74 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.74 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 98.73 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 98.73 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 98.71 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 98.7 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 98.7 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 98.67 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 98.66 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 98.65 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 98.65 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 98.65 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 98.64 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 98.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.62 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 98.61 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 98.61 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 98.58 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 98.57 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 98.56 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 98.53 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 98.53 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 98.53 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 98.5 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.48 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 98.46 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 98.45 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 98.4 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 98.36 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 98.34 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.3 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 98.3 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 98.27 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 98.26 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 98.22 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 98.22 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 98.21 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.16 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.15 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 98.15 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 98.14 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.12 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.09 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 98.06 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.03 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.01 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.98 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.98 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.97 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.97 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.93 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.91 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.87 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 97.85 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 97.83 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.79 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.79 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.77 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 97.74 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.73 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 97.64 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.63 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 97.61 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.56 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.53 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.3 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.29 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 97.18 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.17 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.07 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.06 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.95 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.78 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.49 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.07 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 96.01 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 95.83 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 95.69 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 95.63 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.92 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.56 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 94.03 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 93.94 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.93 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 93.91 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 93.74 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 93.22 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 92.29 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 91.12 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 89.02 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 87.27 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 86.32 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 85.59 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 85.54 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 84.88 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 84.71 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 84.33 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 84.09 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 83.53 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 83.29 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 82.76 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 80.89 |
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=502.51 Aligned_cols=712 Identities=15% Similarity=0.144 Sum_probs=551.1
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhc-CCHHHHHHHHHHHHhhhc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~ 83 (2100)
.+|.+||.+|++.+++.+.+.+.|++|.++|.+|+++..+++.++. .|++..|.+++++ .++++...|.++|..+|+
T Consensus 2 ~~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 4799999999999999888888999999999999999889999875 5789999999999 789999999999999999
Q ss_pred cchhhHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHH----HHhccCCCCcccc-cchhccC------ChHHHHHHhhc
Q 000133 84 ENELRVK-VLLGGCIPPLLGLLKSSSAEGQIAAAKTIY----AVSQGGAKDYVGS-KIFSTEG------VVPVLWEQLKN 151 (2100)
Q Consensus 84 ~~~~~~~-i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~----~Ls~~~~~~~~~~-~~~~~~g------~vp~L~~lL~~ 151 (2100)
++..|.. ++..=++|.++.+|.+++.+...+++..+. .++.+..+.+.+. +.++... .+..|++++.+
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 9987764 556677999999999999888777765554 3444333333221 1222222 24557777777
Q ss_pred cCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC-----------CHHHHHHHHHHHHHHhhcCcchh
Q 000133 152 GLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-----------QSSTQAHVCFLLACMMEEDVSVC 220 (2100)
Q Consensus 152 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~-----------~~~v~~~a~~~L~~L~~~~~~~~ 220 (2100)
...+........-...+|+-..+-..-...+..+|+..++.....- .+++|.++.-+|.++........
T Consensus 160 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 160 RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 6666543333333445555333211111244568899999987651 46799999999998875443111
Q ss_pred -hHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHH-hCCChHHHHHhhcCCCcchhhhhhhHHHHHH
Q 000133 221 -SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA-GSNGIPAMINATIAPSKEFMQGEYAQALQEN 298 (2100)
Q Consensus 221 -~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~ 298 (2100)
......- +..+++-.-...+.+-...|++++.++..+.++....++ ..|+++.++.++.+++ ..+|++
T Consensus 240 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~---------~~~q~~ 309 (810)
T 3now_A 240 AKARFTDQ-IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD---------ELQQRV 309 (810)
T ss_dssp HHHHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC---------HHHHHH
T ss_pred hHHHHHHH-HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC---------HHHHHH
Confidence 1122222 333333222335567889999999999999988877776 7899999999998865 678899
Q ss_pred HHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHH
Q 000133 299 AMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQER 378 (2100)
Q Consensus 299 a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~ 378 (2100)
|++++.+++.+ +.. +..+. ..++ +.|+.++++++ ..+|.+
T Consensus 310 A~~al~~aa~~-~~~-------------R~~I~------------------------~~gv-~~L~~Ll~s~~-~~vr~~ 349 (810)
T 3now_A 310 ACECLIAASSK-KDK-------------AKALC------------------------EQGV-DILKRLYHSKN-DGIRVR 349 (810)
T ss_dssp HHHHHHHHTTS-HHH-------------HHTTH------------------------HHHH-HHHHHHTTCSC-HHHHHH
T ss_pred HHHHHHHHcCC-cHH-------------HHHHH------------------------HcCc-HHHHHHHcCCC-HHHHHH
Confidence 99999998764 111 11111 1234 77888887655 457999
Q ss_pred HHHHHHHHhCCC--ccchhhhcccc----HHHHHHhhcCC--CHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 379 TIEALASLYGNP--LLSIKLENSEA----KRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 379 aa~aL~~L~~~~--~~~~~l~~~g~----i~~Lv~lL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
|+.+|++++... +......+.|+ ++.++.+|.++ +++++++|+++|.+|+.+.....+.+.+.|++|.|+.+
T Consensus 350 Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~L 429 (810)
T 3now_A 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDL 429 (810)
T ss_dssp HHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHH
Confidence 999999996432 22322333344 55677888877 88999999999999999854444444467899999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCcc-----------------------------c---HHHHHhcCChHHHHHhccCCCH
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDD-----------------------------S---KWAITAAGGIPPLVQILESGSA 498 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~-----------------------------~---~~~i~~~g~i~~Lv~lL~~~~~ 498 (2100)
++++++.+++.|+++|.||+.+.+. . .+.++++|++|.|+++|.++++
T Consensus 430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~ 509 (810)
T 3now_A 430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESH 509 (810)
T ss_dssp HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCH
Confidence 9999999999999999999975421 1 2788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHH
Q 000133 499 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 578 (2100)
Q Consensus 499 ~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 578 (2100)
.+|+.|+|+|.||+. ++++|..+.++|++|+|+.+|+++++..++.|+++|.+|+.+.++ +..
T Consensus 510 ~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---------------~~~- 572 (810)
T 3now_A 510 NSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---------------EVS- 572 (810)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---------------HHH-
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---------------hhh-
Confidence 999999999999997 478999999999999999999999999999999999999875443 100
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~-~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
+. .....+++|.|+++|.++ +...+..|+++|.||+..+++.+..+++.|++|.|+.++.
T Consensus 573 ------------------~~-~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~ 633 (810)
T 3now_A 573 ------------------FS-GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633 (810)
T ss_dssp ------------------TT-THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ------------------hc-chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 00 000124699999999866 4556679999999999998889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcHHHHHHHH-cCcHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIA-EEIIL 734 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-~~~~~~~~v~-~~~v~ 734 (2100)
++++.+++.|+++|+||+.+. +..+. +.+ .|.++.|+.++.+++.++|+.|+|||+||+. +++....+++ .+.++
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~~-~~~~~-~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~ 711 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMSE-DVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTSH-HHHHH-HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCh-HHHHH-HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence 999999999999999997754 33333 554 7899999999999999999999999999997 5777888888 89999
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc---ccccchHhHHHHHHHHHHcCCC
Q 000133 735 PATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA---SGSVATSEALDALAILSRSGGA 810 (2100)
Q Consensus 735 ~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~---~~~v~~~~al~~L~~L~~~~~~ 810 (2100)
+|+.++++++.+++..|+|+|.+++.+. ......+...|++++|+++++.+ +.++. +.|+++|.++++.+.-
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~-e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAR-EVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHH-HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999743 24566677899999999999876 36666 9999999999876653
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=403.36 Aligned_cols=661 Identities=13% Similarity=0.096 Sum_probs=492.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcch-hhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHh----hhccc
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS----LCKEN 85 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~-~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~----L~~~~ 85 (2100)
|..+.+.++ .+++++-.-.|++.|..+++... ....++ +.=++|.++.++.+++++.-..+...+.. |+..+
T Consensus 51 ~~~~~~l~~-~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (810)
T 3now_A 51 IAKVASLTK-VEKDQDIYVNMVHLVAALCENSVERTKGVL--TELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLK 127 (810)
T ss_dssp HHHHHHHHH-HCCCHHHHHHHHHHHHHHHTTCHHHHHHHH--HHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHh-ccCchhHHHHHHHHHHHHHhccHHHHHHHH--HHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 444444443 34566677899999999999874 233333 23468999999999888765555554443 33111
Q ss_pred h----hhH-HHHh------cCChHHHHHhhcCCC--HHHHHHHHHHHH-HHhccCCCCcccccchhccCChHHHHHHhhc
Q 000133 86 E----LRV-KVLL------GGCIPPLLGLLKSSS--AEGQIAAAKTIY-AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKN 151 (2100)
Q Consensus 86 ~----~~~-~i~~------~g~i~~Lv~lL~s~~--~~~~~~A~~aL~-~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~ 151 (2100)
. .+. .++. ...+..|+.++.+.. ...|.++...|. |+-.. +...-.-++..+++..+++.-..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~l~v~~~ 204 (810)
T 3now_A 128 NKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT---ALEWAERLVEIRGLCRLLDVCSE 204 (810)
T ss_dssp SSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCT---TTTHHHHHHHTTHHHHHHHHHTC
T ss_pred cccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcc---ccccccchhhHhhHHHHHHHHhc
Confidence 1 111 1211 134556667776544 556777776655 33321 11111115667778888877655
Q ss_pred cCCC--------cchHHHHHHHHHHHhccC--ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhh
Q 000133 152 GLKS--------GNVVDNLLTGALRNLSTS--TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCS 221 (2100)
Q Consensus 152 ~~~~--------~~~v~~~a~~aL~nL~~~--~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~ 221 (2100)
.... .+..+..+.-+|..+-.+ .+..+ .....-+-..+...+..++.+-...|++++.++.....+...
T Consensus 205 ~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~ 283 (810)
T 3now_A 205 LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK-ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGN 283 (810)
T ss_dssp CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHH
T ss_pred CccccccccCCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHH
Confidence 3221 233777777777766422 22222 222222233445566678888889999999999988887777
Q ss_pred HHh-hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHH
Q 000133 222 RVL-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300 (2100)
Q Consensus 222 ~i~-~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~ 300 (2100)
.++ ..|+++.|+.++.+.+ ..++..|+++|.+++. ++++|..+.+.|+ |.|..++.+.+ ..++.+|.
T Consensus 284 ~~~~~~G~v~~li~Ll~s~~-~~~q~~A~~al~~aa~-~~~~R~~I~~~gv-~~L~~Ll~s~~---------~~vr~~Al 351 (810)
T 3now_A 284 QVVAREGILQMILAMATTDD-ELQQRVACECLIAASS-KKDKAKALCEQGV-DILKRLYHSKN---------DGIRVRAL 351 (810)
T ss_dssp HHHHTTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHTT-SHHHHHTTHHHHH-HHHHHHTTCSC---------HHHHHHHH
T ss_pred HHHhccchHHHHHHHhCCCC-HHHHHHHHHHHHHHcC-CcHHHHHHHHcCc-HHHHHHHcCCC---------HHHHHHHH
Confidence 665 8899999999999865 6899999999999887 5889999999874 99999997543 56788999
Q ss_pred HHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC-ChHHHHHH
Q 000133 301 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL-PFLVQERT 379 (2100)
Q Consensus 301 ~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~-~~~vq~~a 379 (2100)
.+|+++..... + +...+..+ .|.+ ..+.+.|+++|.++. +..+++.|
T Consensus 352 ~~L~kl~s~~~-----------~-d~~~~~~~-~g~i-------------------~~Lv~~l~~lL~~~~~d~~v~~~A 399 (810)
T 3now_A 352 VGLCKLGSYGG-----------Q-DAAIRPFG-DGAA-------------------LKLAEACRRFLIKPGKDKDIRRWA 399 (810)
T ss_dssp HHHHHHHTTTT-----------T-TTSCCSST-TTHH-------------------HHHHHHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHHhccccc-----------c-Cccccchh-hccH-------------------HHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999864210 0 00001110 1112 134566778877762 44579999
Q ss_pred HHHHHHHhCCCccchhhh-ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-------------------------
Q 000133 380 IEALASLYGNPLLSIKLE-NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS------------------------- 433 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~------------------------- 433 (2100)
+++|++|...++.+..+. +.|+++.|+.+++++++.++..|+++|.||+.+.+.
T Consensus 400 veaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 400 ADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 999999999999888777 579999999999999999999999999999986421
Q ss_pred ----ch---HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHH
Q 000133 434 ----LW---RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSAS 506 (2100)
Q Consensus 434 ----~~---~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~ 506 (2100)
.+ +.++++|++|.|+.+++++++.+|+.|+|+|+||+. +++++..++++|++|+|+.+|.++++..|+.|+|
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 12 678899999999999999999999999999999994 7889999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHH---HhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHH
Q 000133 507 ILRNLCNHSEDIRACV---ESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582 (2100)
Q Consensus 507 aL~~L~~~~~~~~~~i---~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 582 (2100)
+|.||+...+. ...+ ...|++|+|+++|.++ +...+..|+++|.||+..++.
T Consensus 559 AL~nL~~~~~p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~----------------------- 614 (810)
T 3now_A 559 ALARIGITINP-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES----------------------- 614 (810)
T ss_dssp HHHHHHHHSCH-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-----------------------
T ss_pred HHHHHhcCCCh-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-----------------------
Confidence 99999964222 1111 1246999999999865 334567899999999874321
Q ss_pred HHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCchHHHHHhhcCCCH
Q 000133 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVGSE 661 (2100)
Q Consensus 583 aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~ 661 (2100)
.+..+.+.||++.|+.+|.++++.+|+.|+++|+||+.+ ++.+..+.. .|+++.|+.++.+.+.
T Consensus 615 --------------~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~ 679 (810)
T 3now_A 615 --------------VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDE 679 (810)
T ss_dssp --------------HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred --------------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence 233455678999999999999999999999999999997 567777775 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcHHHHHHHHcCcHHHHHHH
Q 000133 662 CILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRV 739 (2100)
Q Consensus 662 ~v~~~aa~aL~~L~~~~~~~~~~~~~~-~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~-~~~~~~~~v~~~~v~~L~~l 739 (2100)
.+++.|+++|++++.+.+... ..+++ .|++++|+.++.+++.++|+.|+|+|+||+. +++....+++.|++++|..+
T Consensus 680 ~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~L 758 (810)
T 3now_A 680 ETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758 (810)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987544333 34677 8999999999999999999999999999985 46677888899999999999
Q ss_pred HccC---ChhHHHHHHHHHHHHHhcCc
Q 000133 740 LCEG---TISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 740 l~~~---~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
++.. ++++...|..+|.+++...-
T Consensus 759 L~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 759 GQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp CCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 9766 46689999999999986543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=412.38 Aligned_cols=531 Identities=20% Similarity=0.183 Sum_probs=445.6
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.|+++.|+.+|+++++.+|..|+.+|++++.+++.+..+... |+++.|+++|.++ +.+++..|+.+|.+++. +.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~----~~ 88 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 88 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT----SH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----Ch
Confidence 589999999999999999999999999999888877777655 8899999999875 88999999999999998 33
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.++..+.+.|++|.|+++|.+. ++.++..++++|+|++...+..+..+++.|+++.|+++|+++++.++..++.+|.
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 4677788999999999999873 4668999999999999877777787889999999999999999999999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~ 290 (2100)
+++..++..+..+.+.|+++.|++++.++.+...+..++.+|++|+. +++++..+++.|+++.|+.++..++
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSC-------
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCC-------
Confidence 99987777888999999999999999988777889999999999997 7889999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC
Q 000133 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370 (2100)
Q Consensus 291 ~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~ 370 (2100)
..+++.++++|.|++.....
T Consensus 238 --~~~~~~a~~~L~nL~~~~~~---------------------------------------------------------- 257 (644)
T 2z6h_A 238 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 257 (644)
T ss_dssp --HHHHHHHHHHHHHHGGGCTT----------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHhhcchh----------------------------------------------------------
Confidence 67889999999998853110
Q ss_pred CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 371 ~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
.....++++.|+.++.+.+++++..|+++|.+|+.+++.+++.+.+.|+++.|+.+
T Consensus 258 ------------------------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~l 313 (644)
T 2z6h_A 258 ------------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313 (644)
T ss_dssp ------------------------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------------------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 00012567888999999999999999999999999887888999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhccCCcc---cHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 451 LGLS--SEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 451 L~s~--~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+.+. .+.++..|+++|+||+..+++ .+..+.+.|+++.|+++|.+++ +.+++.|+|+|+||+.. +.++..+.+
T Consensus 314 L~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~ 392 (644)
T 2z6h_A 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 392 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9863 379999999999999864442 3556888999999999999875 79999999999999985 677888999
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
.|+++.|++++.++++.+++.|++++.+-... .
T Consensus 393 ~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~-----------------------------------------------~ 425 (644)
T 2z6h_A 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-----------------------------------------------E 425 (644)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC----------C-----------------------------------------------C
T ss_pred cCCHHHHHHHHhccchhhhhHhhhccccchhc-----------------------------------------------c
Confidence 99999999999998888888888877651000 0
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
+ ..+++++..++.+|++|+.+ +..+..+...|++++|+.++.+.++.+++.++.+|.+++.. + ..+.
T Consensus 426 ~----------~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-~~~~ 492 (644)
T 2z6h_A 426 G----------VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EAAE 492 (644)
T ss_dssp S----------SCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H-HHHH
T ss_pred c----------ccHHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H-HHHH
Confidence 0 02355778899999999987 57888899999999999999999999999999999999754 3 4555
Q ss_pred HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHHHcCcHHHHHHHHccCChh
Q 000133 685 AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
.+.+.|+++.|..++.++++++|+.|+++|++|..+.+ .....+ .++.+..+++++...
T Consensus 493 ~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~il~~~~~~~~~~ 552 (644)
T 2z6h_A 493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL---SVELTSSLFRTEPMA 552 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH---HHHHHHHHSCCSCGG
T ss_pred HHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc---chHHHHHHHhCCCcc
Confidence 68899999999999999999999999999999996643 222222 366667777766544
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=407.10 Aligned_cols=505 Identities=20% Similarity=0.190 Sum_probs=425.5
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.|++|.|+.+|+++++.+|..|+.+|.+++.+++.+..+... |++++|+++|.++ +++.+..|+.+|++++. +.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----~~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----SH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc----Cc
Confidence 588999999999999999999999999999888887777755 8999999999765 88999999999999997 33
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.++..+.+.|++|.|+++|.+. ++.++..++++|++++..++..+..+++.|++|.|++++++++++++..++.+|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4677788999999999999873 4668889999999999887777888889999999999999999999999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~ 290 (2100)
+++..++..+..+.+.|+++.|+++++++.+...+..++.+|++|+. +++++..+.+.|+++.|+.++.+++
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~------- 240 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 240 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSC-------
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCC-------
Confidence 99988787888999999999999999987777788889999999997 7789999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC
Q 000133 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370 (2100)
Q Consensus 291 ~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~ 370 (2100)
..++++++++|.|++.+.+.
T Consensus 241 --~~~~~~a~~~L~~l~~~~~~---------------------------------------------------------- 260 (529)
T 1jdh_A 241 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 260 (529)
T ss_dssp --HHHHHHHHHHHHHHHTTCTT----------------------------------------------------------
T ss_pred --hHHHHHHHHHHHHHhcCChh----------------------------------------------------------
Confidence 67888999999998863110
Q ss_pred CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 371 ~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
.....++++.|+.++.+++++++..|+++|.+|+.+++..+..+.+.|+++.|+++
T Consensus 261 ------------------------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 261 ------------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp ------------------------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------------------hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 00012567888999999999999999999999999887888999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHhccCCcc---cHHHHHhcCChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 451 LGL--SSEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 451 L~s--~~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+.+ .++.+++.|+++|+||+.++++ .+..+.+.|++|.|+++|.+++ +.++..++|+|+|++.. +..+..+.+
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~ 395 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 395 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHH
Confidence 975 3479999999999999875444 3678899999999999999886 69999999999999985 677888999
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
.|++|.|+++++++++.+++.|+|++.|.+..... ...+++..+..+|+.++.. ++ .+..+.+.
T Consensus 396 ~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~------------~~~~i~~~~~~al~~L~~~---~~-~~~~l~~~ 459 (529)
T 1jdh_A 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV------------RMEEIVEGCTGALHILARD---VH-NRIVIRGL 459 (529)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----------CBTTB------------CHHHHHHHHHHHHHHHTTS---HH-HHHHHHHT
T ss_pred cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc------------cHHHHHHHHHHHHHHHhcC---ch-HHHHHhcc
Confidence 99999999999998999999999999985432211 1123445566777766542 33 34566778
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
++++.|+.++.++++.+++.|+++|++++.+ ++.+..+.+.|+++.|.+++.+++++++..|+.+|.+|
T Consensus 460 ~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999975 77888899999999999999999999999999999887
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=417.68 Aligned_cols=563 Identities=20% Similarity=0.179 Sum_probs=447.3
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVK 90 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~ 90 (2100)
+..+++.|..+ ++..+..++. +....+ +..+. .|++|.|+.+|.++++.+|..|+.+|++++.+++.+..
T Consensus 117 i~~lv~~L~~~--~~~~r~~a~~-~l~~~~-----~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEP--SQMLKHAVVN-LINYQD-----DAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ---------CC--SCHHHHHHHH-HHHHHH-----HHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCc--cHHHHHHHHH-HHHhhh-----HHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHH
Confidence 56677776543 2333333333 333221 11222 48999999999999999999999999999988877777
Q ss_pred HHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHH
Q 000133 91 VLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALR 168 (2100)
Q Consensus 91 i~~~-g~i~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~ 168 (2100)
+... |+++.|+.+|+++ +.+++..|+.+|++++. +..++..+.+.|++|.|+++|++. ++.++..++++|.
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~----~~~~~~~i~~~g~I~~Lv~lL~~~---~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH----HREGLLAIFKSGGIPALVNMLGSP---VDSVLFHAITTLH 259 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT----SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC----CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 7754 8999999999865 89999999999999998 334466788899999999999874 4668899999999
Q ss_pred HhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHH
Q 000133 169 NLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 248 (2100)
Q Consensus 169 nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~A 248 (2100)
|++...+..+..+++.|+++.|+++|++++..++..++.+|..++..++..+..+.+.|+++.|+++++.+++...+..+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 99988778888888999999999999999999999999999999987777888999999999999999988777788899
Q ss_pred HHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChh
Q 000133 249 AGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPA 328 (2100)
Q Consensus 249 a~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~ 328 (2100)
+.+|++|+. +++++..+++.|+++.|+.++.+.+ ..+++.++++|.|++.....
T Consensus 340 ~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~---------~~~~~~a~~~L~~L~~~~~~---------------- 393 (780)
T 2z6g_A 340 SRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS---------QRLVQNCLWTLRNLSDAATK---------------- 393 (780)
T ss_dssp HHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC---------HHHHHHHHHHHHHHHTTCTT----------------
T ss_pred HHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc---------hHHHHHHHHHHHHHhccchh----------------
Confidence 999999997 6788999999999999999997653 56788889999988853110
Q ss_pred hhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHh
Q 000133 329 QVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGL 408 (2100)
Q Consensus 329 ~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~l 408 (2100)
.....++++.|+.+
T Consensus 394 ------------------------------------------------------------------~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 394 ------------------------------------------------------------------QEGMEGLLGTLVQL 407 (780)
T ss_dssp ------------------------------------------------------------------CSCCHHHHHHHHHH
T ss_pred ------------------------------------------------------------------hhhhhhHHHHHHHH
Confidence 00012467888889
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcc---cHHHHHhc
Q 000133 409 ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDD---SKWAITAA 483 (2100)
Q Consensus 409 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~ 483 (2100)
+.+.++.++..|+++|.+|+.+++..+..+.+.|+++.|+.++.+. .+.++..|+++|+||+..+++ .+..+...
T Consensus 408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~ 487 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence 9999999999999999999998888888999999999999999863 348999999999999865544 25688899
Q ss_pred CChHHHHHhccCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcH
Q 000133 484 GGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI 562 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~-~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i 562 (2100)
|+++.|+++|.+++ +.+++.|+|+|+||+.. +..+..+.+.|+++.|+++|+++++.+++.+++++.|....
T Consensus 488 ~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~------ 560 (780)
T 2z6g_A 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------ 560 (780)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCS------
T ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhh------
Confidence 99999999999876 59999999999999984 77788899999999999999988888888777766551000
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 563 SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 642 (2100)
Q Consensus 563 ~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~ 642 (2100)
. ....+++++.++.+|++|+.+ ++++..
T Consensus 561 ----------------------------------------~-----------~~~~~~v~~~a~~aL~~La~~-~~~~~~ 588 (780)
T 2z6g_A 561 ----------------------------------------E-----------GVRMEEIVEACTGALHILARD-IHNRIV 588 (780)
T ss_dssp ----------------------------------------T-----------TCCHHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred ----------------------------------------c-----------ccChHHHHHHHHHHHHHHhcC-hhhHHH
Confidence 0 001245778899999999975 678888
Q ss_pred HHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH
Q 000133 643 SIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722 (2100)
Q Consensus 643 ~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~ 722 (2100)
+...|++|+|+.++.++++.++..++.+|.+++.. ...+..+.+.|+++.|++++.++++++|+.|+++|.+|..+.+
T Consensus 589 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 88999999999999999999999999999999743 3456668999999999999999999999999999999997654
Q ss_pred H-HHHHHHcCcHHHHHHHHccCChh
Q 000133 723 V-SEKAIAEEIILPATRVLCEGTIS 746 (2100)
Q Consensus 723 ~-~~~~v~~~~v~~L~~ll~~~~~~ 746 (2100)
. .... -.++.+.+++++++..
T Consensus 667 ~~~~~~---l~~~ll~~l~~~~~~~ 688 (780)
T 2z6g_A 667 QDYKKR---LSVELTSSLFRTEPMT 688 (780)
T ss_dssp TTHHHH---HHHHHHHHC-------
T ss_pred Hhhhcc---ccHHHHHHHHhCCCcc
Confidence 2 1111 1555666666666543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=396.86 Aligned_cols=508 Identities=19% Similarity=0.179 Sum_probs=415.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHHh
Q 000133 92 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170 (2100)
Q Consensus 92 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL 170 (2100)
...|++|+|+.+|++++++++..|+.+|.+++. +...+..+. ..|++|.|+++|... .++.++..++.+|+++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~----~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNL 87 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT----SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc----CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998 333344444 458999999999764 3456888999999999
Q ss_pred ccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHH
Q 000133 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 250 (2100)
Q Consensus 171 ~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~ 250 (2100)
+..+ ..+..+.+.|++|.|+++|+++++.++..|+++|.+++..++..+..+.+.|+++.|++++.+++ .+++..++.
T Consensus 88 s~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~ 165 (529)
T 1jdh_A 88 SHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTD 165 (529)
T ss_dssp TTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHH
T ss_pred HcCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHH
Confidence 8664 57788999999999999999999999999999999999887767888889999999999999854 689999999
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
+|++++.++++++..+.+.|+++.|+.++.+.+ ....+..+..
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~--------~~~~~~~a~~----------------------------- 208 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSR----------------------------- 208 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--------CHHHHHHHHH-----------------------------
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHHHHH-----------------------------
Confidence 999999988999999999999999999986543 1233333444
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 410 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 410 (2100)
+|.++..+++++..+.+.|+++.|+.++.
T Consensus 209 ---------------------------------------------------~L~~l~~~~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T 1jdh_A 209 ---------------------------------------------------VLKVLSVCSSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp ---------------------------------------------------HHHHHTTSTTHHHHHHHTTHHHHHHTTTT
T ss_pred ---------------------------------------------------HHHHHhcCcccHHHHHHCCCHHHHHHHHh
Confidence 44444445555666777899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
++++.+++.++++|.+|+...+... ...++++.|++++.+++++++..|+++|++|+.++++.+..+.+.|+++.|+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 9999999999999999998754321 1236799999999999999999999999999987778999999999999999
Q ss_pred HhccC--CCHHHHHHHHHHHHHHhcCChh---hHHHHHhCCcHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHHH
Q 000133 491 QILES--GSAKAKEDSASILRNLCNHSED---IRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQ 564 (2100)
Q Consensus 491 ~lL~~--~~~~vre~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~~ 564 (2100)
++|.+ .++++++.|+++|+||+..+++ .+..+.+.|++|.|+++|++++ +.+++.++++|+|++...+.
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~----- 389 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN----- 389 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-----
Confidence 99975 3489999999999999986443 5778889999999999999876 58999999999999763211
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 565 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 565 L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
+..+.+.+++|.|+.++.++++++|+.|+|++.|.+...
T Consensus 390 ---------------------------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~-------- 428 (529)
T 1jdh_A 390 ---------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-------- 428 (529)
T ss_dssp ---------------------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT--------
T ss_pred ---------------------------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc--------
Confidence 123445678999999999999999999999999843221
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
|+ ....++..++.++.+++.. + .++..+.+.|+++.|+.++.+++++++..|+++|++|..+++.+
T Consensus 429 --~~----------~~~~i~~~~~~al~~L~~~-~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 494 (529)
T 1jdh_A 429 --GV----------RMEEIVEGCTGALHILARD-V-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494 (529)
T ss_dssp --TB----------CHHHHHHHHHHHHHHHTTS-H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred --cc----------cHHHHHHHHHHHHHHHhcC-c-hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 11 1244667889999999764 3 55666899999999999999999999999999999999888888
Q ss_pred HHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 725 EKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
..+.+.++++.|.+++.+++++++..|.++|.++
T Consensus 495 ~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999887
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=412.59 Aligned_cols=545 Identities=19% Similarity=0.189 Sum_probs=440.0
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
...++.++..|+++++++|..++..+... .+..+ ..|++|.|+.+|.++++.+|..|+.+|.+|+. +...
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~----~~~~ 183 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEAS 183 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT----SHHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC----CChh
Confidence 34689999999999999988888887743 22333 47899999999999999999999999999998 3333
Q ss_pred ccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 133 SKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 133 ~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
+..+. ..|+++.|++.|... .++.++..++.+|++|+... .++..+.+.|+++.|+++|+++++.++..|+++|.+
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44455 458999999999864 35668889999999998765 557778899999999999999999999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhh
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 291 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~ 291 (2100)
++...+..+..+.+.|+++.|+++|.+++ .+++..++.+|++++..+++++..+.+.|+++.|+.++...+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-------- 331 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-------- 331 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC--------
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--------
Confidence 99887777788888999999999999854 689999999999999888999999999999999999997543
Q ss_pred hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC
Q 000133 292 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 371 (2100)
Q Consensus 292 ~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~ 371 (2100)
....++.++.+|.|++
T Consensus 332 ~~~~~~~a~~aL~~Ls---------------------------------------------------------------- 347 (780)
T 2z6g_A 332 YEKLLWTTSRVLKVLS---------------------------------------------------------------- 347 (780)
T ss_dssp CHHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 1234445555555544
Q ss_pred ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh
Q 000133 372 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 451 (2100)
.++.++..+.+.|+++.|+.++.+.+..+++.++++|.+|+...... ....++++.|+.++
T Consensus 348 ----------------~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 348 ----------------VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL 408 (780)
T ss_dssp ----------------TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT
T ss_pred ----------------cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH
Confidence 33444556667789999999999999999999999999999875432 11236799999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChh---hHHHHHhCC
Q 000133 452 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSED---IRACVESAD 526 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~---~~~~i~~~g 526 (2100)
++.++.++..|+++|++|+...++.+..+.+.|+++.|+++|.+. .+++++.|+++|+||+..+++ .+..+...|
T Consensus 409 ~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 409 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 999999999999999999987778899999999999999999763 359999999999999975444 467888999
Q ss_pred cHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccc
Q 000133 527 AVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 605 (2100)
Q Consensus 527 ~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~ 605 (2100)
+++.|+++|.+++. .+++.++++|+|++...+ .+..+.+.+
T Consensus 489 ~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~--------------------------------------~~~~i~~~g 530 (780)
T 2z6g_A 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--------------------------------------NHAPLREQG 530 (780)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH--------------------------------------HHHHHHHTT
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH--------------------------------------HHHHHHHCC
Confidence 99999999998764 899999999999976211 122344567
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH--HhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 606 AVETMIKILSSTKEETQAKSASALAG--IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~--L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
+++.|+++|.+++.++|+.|+|++.| +.. ....++++..++.+|++++.+ ..++
T Consensus 531 ~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~----------------------~~~~~~v~~~a~~aL~~La~~--~~~~ 586 (780)
T 2z6g_A 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE----------------------GVRMEEIVEACTGALHILARD--IHNR 586 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCST----------------------TCCHHHHHHHHHHHHHHHTTS--HHHH
T ss_pred CHHHHHHHHHhcchhHHHHHhhccccchhhc----------------------ccChHHHHHHHHHHHHHHhcC--hhhH
Confidence 89999999999999999999998877 211 112356888999999999754 3566
Q ss_pred HHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 684 VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 684 ~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
..+.+.|+++.|++++.+++++++..|+.+|++|..+++.+..+...++++.|.+++.+++..+++.|+++|.++....+
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 66889999999999999999999999999999999888888888899999999999999999999999999999997665
Q ss_pred c
Q 000133 764 I 764 (2100)
Q Consensus 764 ~ 764 (2100)
.
T Consensus 667 ~ 667 (780)
T 2z6g_A 667 Q 667 (780)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=397.77 Aligned_cols=512 Identities=20% Similarity=0.188 Sum_probs=423.6
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHH
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 169 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~n 169 (2100)
....|++|.|+.+|+++++.+|..|+.+|.+++.. ...+..+. ..|+++.|++.|... .++.++..++.+|++
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~----~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK----EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHN 83 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS----TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC----ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999983 22344444 458999999999864 345688889999999
Q ss_pred hccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHH
Q 000133 170 LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 249 (2100)
Q Consensus 170 L~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa 249 (2100)
|+... ..+..+.+.|+++.|+++|+++++.++..|+.+|.+++..++..+..+++.|+++.|+++|.+++ ..++..++
T Consensus 84 Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITT 161 (644)
T ss_dssp HTTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHH
T ss_pred HhcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHHHHHHH
Confidence 99765 47788999999999999999999999999999999999887767788889999999999999865 57888889
Q ss_pred HHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhh
Q 000133 250 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQ 329 (2100)
Q Consensus 250 ~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~ 329 (2100)
.+|++++.++++++..+.+.|+++.|+.++.+.+ ...+++.++.+|.|++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~~~~~~a~~~L~nLs---------------------- 211 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSRVLKVLS---------------------- 211 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC--------CHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC--------hHHHHHHHHHHHHHHh----------------------
Confidence 9999999888999999999999999999997643 1334445555555444
Q ss_pred hhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh
Q 000133 330 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI 409 (2100)
Q Consensus 330 ~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL 409 (2100)
.++.++..+.+.|+++.|+.++
T Consensus 212 ----------------------------------------------------------~~~~~~~~l~~~g~l~~L~~ll 233 (644)
T 2z6h_A 212 ----------------------------------------------------------VCSSNKPAIVEAGGMQALGLHL 233 (644)
T ss_dssp ----------------------------------------------------------TCTTHHHHHHHTTHHHHHHTTT
T ss_pred ----------------------------------------------------------cCcccHHHHHHCCCHHHHHHHH
Confidence 4445556677788999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 410 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 410 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
.+.+..+++.++++|.+|+...+.. ....++++.|+.++++.++++++.|+++|++|+..+++++..+.+.|+++.|
T Consensus 234 ~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 234 TDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 9999999999999999999875432 1123679999999999999999999999999998777889999999999999
Q ss_pred HHhccCC--CHHHHHHHHHHHHHHhcCCh---hhHHHHHhCCcHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHH
Q 000133 490 VQILESG--SAKAKEDSASILRNLCNHSE---DIRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATIS 563 (2100)
Q Consensus 490 v~lL~~~--~~~vre~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~ 563 (2100)
+++|.+. .+++++.|+++|+||+..++ ..+..+.+.|+++.|+++|++.+ +.+++.++++|+|++...+.
T Consensus 311 v~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~---- 386 (644)
T 2z6h_A 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN---- 386 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG----
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH----
Confidence 9999864 38999999999999997544 35666888999999999999875 68999999999999763211
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH--HhcCChhhHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG--IFETRKDLRE 641 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~--L~~~~~~~~~ 641 (2100)
+..+.+.++++.|+++|.+++.++|+.|+|++.+ +..+
T Consensus 387 ----------------------------------~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~------ 426 (644)
T 2z6h_A 387 ----------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------ 426 (644)
T ss_dssp ----------------------------------HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS------
T ss_pred ----------------------------------HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc------
Confidence 1234456789999999999999999999998877 2211
Q ss_pred HHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc
Q 000133 642 SSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 642 ~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~ 721 (2100)
..+..++..++.+|.+++.+. .++..+.+.++++.|++++.+++++++..|+++|++|..++
T Consensus 427 ----------------~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 427 ----------------VRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH
T ss_pred ----------------ccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH
Confidence 134568889999999997653 56666889999999999999999999999999999999888
Q ss_pred HHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 722 EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 722 ~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
+.+..+...++++.|.+++.+++.+++..|+++|.++.....
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 888888899999999999999999999999999999876553
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=371.19 Aligned_cols=417 Identities=18% Similarity=0.196 Sum_probs=357.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.++.++..+.+.|++.|..|+..++.+.+ ......+.+++.|+||.|+++|++ +++.+|.+|+|+|+||++++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 47889999999999999999999998654 334457889999999999999975 5689999999999999988999999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-----hHHHHHHHHHHHH
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNHL 553 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~Aa~aL~~L 553 (2100)
.+++.|+||.|+++|.++++++|+.|+|+|+||+.++++.|..+.+.|++++|+.++.+.+. ..++.++++|+++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999987543 3677889999999
Q ss_pred hcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 554 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+...++. .. .....+++|.|+.++.+++++++..|+++|.+|+
T Consensus 218 ~~~~~~~-------------~~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPA-------------PP------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSSC-------------CC------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccch-------------hH------------------------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8755331 00 0011345899999999999999999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 634 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 634 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
.++++....+...|++|.|+.++.+.+..++..++++|++++.+. +.++..+++.|+++.|+.++.++++++|+.|+|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHH
Confidence 988888888999999999999999999999999999999997765 4566668999999999999999999999999999
Q ss_pred HHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccccc
Q 000133 714 LANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV 792 (2100)
Q Consensus 714 L~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v 792 (2100)
|+||+.+ .+....+++.++++.|+.++++++..++..|+|+|.++...... ....++...|++++|+++|++.+.++
T Consensus 340 L~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 9999965 45566677899999999999999999999999999999976543 23444567999999999999988888
Q ss_pred chHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc
Q 000133 793 ATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 793 ~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
. ..++.+|.++++..+... ..+.+...++..++++.|...+.+.|+.++++|..+|++||+++.+
T Consensus 418 ~-~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 418 I-QVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp H-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred H-HHHHHHHHHHHHHhHhcc-chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 8 999999999987544311 2244556677889999999999999999999999999999875543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=366.00 Aligned_cols=418 Identities=17% Similarity=0.193 Sum_probs=358.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhh-ccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLC-NNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..++.++..+.+++++.|..|+..++++- .......+.+++.|+||.|+.+|+ +.++.++..|+|+|+||+.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999864 444456788999999999999997 4568999999999999998888899
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-----hHHHHHHHHHHH
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNH 552 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~Aa~aL~~ 552 (2100)
..+++.|+||.|+.+|.++++++++.|+|+|+||+.+++++|..+.+.|++++|+.++...+. ..++.++++|++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999999999987543 357889999999
Q ss_pred HhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000133 553 LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632 (2100)
Q Consensus 553 L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L 632 (2100)
++.+.++. +. .....+++|.|+.++.+++++++..|+|+|.++
T Consensus 236 l~~~~~~~-------------~~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 236 LCRNKNPA-------------PP------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHCCCTTC-------------CC------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcccch-------------hh------------------------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 98755431 00 011134589999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000133 633 FETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 712 (2100)
Q Consensus 633 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~ 712 (2100)
+.++++....+...|++|.|+.++.+.+..++..++.+|++++.+. +.++..+.+.|+++.|+.++.++++++++.|+|
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 9998888888999999999999999999999999999999998765 456666899999999999999999999999999
Q ss_pred HHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccc
Q 000133 713 ALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGS 791 (2100)
Q Consensus 713 aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~ 791 (2100)
+|+||+.+ ++....+++.++++.|+.++.+++..++..|+|+|.++..+... ....++...|++++|+++|.+.+.+
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHH
Confidence 99999966 45566677899999999999999999999999999999876543 2334456699999999999998888
Q ss_pred cchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc
Q 000133 792 VATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 792 v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
+. ..++.+|.++++..+... ..+.+...++..++++.|...+.+.|..++++|..+|++||+++.+
T Consensus 436 i~-~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 436 II-QVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp HH-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred HH-HHHHHHHHHHHHHhHhcc-ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 88 899999999987544311 2345566778889999999999999999999999999999875443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=351.18 Aligned_cols=409 Identities=16% Similarity=0.191 Sum_probs=350.8
Q ss_pred CHHHHHHhHccCCHHHHHHHHHHHHHHhhcC-cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHH
Q 000133 186 GIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR 264 (2100)
Q Consensus 186 ~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~ 264 (2100)
.++.+++.+.++|++.|..|+..++++.+.. .+....+++.|++|.|+++|+.+++.+++..|+|+|+||+.+++++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999876443 345789999999999999998877688999999999999999999999
Q ss_pred HHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHh
Q 000133 265 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIY 344 (2100)
Q Consensus 265 ~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l 344 (2100)
.+++.|+||.|+.+|.+++ ..++++|+++|.|++.+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~---------~~v~e~A~~aL~nLa~d~---------------------------------- 174 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGDG---------------------------------- 174 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhCC----------------------------------
Confidence 9999999999999998765 678888888888887531
Q ss_pred ccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC-----HHHHHH
Q 000133 345 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQEE 419 (2100)
Q Consensus 345 ~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~~ 419 (2100)
+..+..+.+.|+++.|+.++.+.+ ...++.
T Consensus 175 ---------------------------------------------~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~ 209 (510)
T 3ul1_B 175 ---------------------------------------------SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209 (510)
T ss_dssp ---------------------------------------------HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHH
Confidence 122344556788888888887543 457889
Q ss_pred HHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHH
Q 000133 420 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 420 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
+++++.+++.+...........+++|.|+.++.+++++++..|+++|++|+.+..+....+.+.|+++.|+++|.+++..
T Consensus 210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 289 (510)
T 3ul1_B 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289 (510)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChh
Confidence 99999999987655444444457899999999999999999999999999987777788899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHH
Q 000133 500 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 579 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 579 (2100)
++..++++|+|++..++..+..+.+.|+++.|+.+|+++++.+++.|+++|+|++.....
T Consensus 290 v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-------------------- 349 (510)
T 3ul1_B 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-------------------- 349 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH--------------------
T ss_pred hhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH--------------------
Confidence 999999999999998889999999999999999999999999999999999999763321
Q ss_pred HHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcC
Q 000133 580 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 580 a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
....+.+.+++|.|+.++.+++.++|+.|+|+|+|++.+ +.+.+..+.+.|++++|+.+|.+
T Consensus 350 -----------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 350 -----------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp -----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred -----------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 122445678899999999999999999999999999875 35677789999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCC-----chhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 659 GSECILVEASRCLAAIFLSV-----RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~-----~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
.+++++..++.+|.++.... .+..+..+.+.|+++.|-.|..+++.++++.|...|...+.
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999997521 12334457889999999999999999999999999987764
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=342.63 Aligned_cols=398 Identities=20% Similarity=0.183 Sum_probs=321.3
Q ss_pred hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Q 000133 93 LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 172 (2100)
Q Consensus 93 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~ 172 (2100)
..+.+|+||.+|.+++++.+..|+.+|.+++.+ +...+..+++.|+||.|+++|.+. +..++..++++|+||+.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~---~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR---NDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHHHTS
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHHHHc
Confidence 458899999999999999999999999999972 455577789999999999999874 45699999999999997
Q ss_pred C-ChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc-------------
Q 000133 173 S-TEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG------------- 237 (2100)
Q Consensus 173 ~-~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------------- 237 (2100)
. ++.++..|+++|+||+|+++|++ ++.+++++++.+|++|+.. +.++..+++ ++++.|++++.
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 57888999999999999999998 5789999999999999984 457778874 68999999872
Q ss_pred ----CCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 238 ----SGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 238 ----~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
+..+.+++.+|+++|+||+..++++|+.+++++| ++.|+.++.+. ...+..+...+++|+++|+||+.....
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~---~~~~~~~~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE---IGQKDSDSKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH---HHTTCCSCHHHHHHHHHHHHHHTTHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh---hcccCccHHHHHHHHHHHHHhhccccc
Confidence 2235789999999999999988888999999766 56999998642 001123467899999999999985322
Q ss_pred hhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCcc
Q 000133 313 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL 392 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~ 392 (2100)
.+..+..+.+.. ... .......++..
T Consensus 275 e~~~~~~~~~~~----------------------------------------------~~~--------~~~~~~~~~~G 300 (584)
T 3l6x_A 275 EIPQAERYQEAA----------------------------------------------PNV--------ANNTGTSPARG 300 (584)
T ss_dssp HSTTCCC--------------------------------------------------------------------CCCCG
T ss_pred cccchhhhhhhc----------------------------------------------ccc--------cccccccCchh
Confidence 221110000000 000 00001234455
Q ss_pred chhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCc----cchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 393 SIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEG----SLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 393 ~~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~----~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
...+.+.++++.|+.+++ +.++.+++.|+++|.|||.++. ..+..+.+.+++|.|+++|.++++.+++.|+++|+
T Consensus 301 ve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~ 380 (584)
T 3l6x_A 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380 (584)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567778888999999996 5689999999999999998752 23445667799999999999999999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESG--------SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG- 538 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~- 538 (2100)
||+. ++.++..| ..|++|.|+++|.++ +.+++..|+++|.||+..+++++..+.+.|++|.|+++++++
T Consensus 381 nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~ 458 (584)
T 3l6x_A 381 NLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN 458 (584)
T ss_dssp HHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS
T ss_pred HHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC
Confidence 9996 56777666 789999999999876 478899999999999988899999999999999999999986
Q ss_pred -ChhHHHHHHHHHHHHhcCC
Q 000133 539 -SANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 539 -~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++.+++.|+++|++|+.+.
T Consensus 459 ~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 459 RSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTSH
T ss_pred CChHHHHHHHHHHHHHHcCH
Confidence 8899999999999999754
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=345.02 Aligned_cols=410 Identities=16% Similarity=0.183 Sum_probs=350.9
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhc-CcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
..++.+++.+.+++++.+..|+..++++.+. ..+....+++.|++|.|+++|..+++.+++..|+|+|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3588999999999999999999999887643 334578899999999999999887778899999999999999999999
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|+||.|+.++.+++ ..++++|+++|.|++.+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~---------~~v~e~A~~aL~nLa~~~--------------------------------- 193 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGAG--------------------------------- 193 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhccC---------------------------------
Confidence 99999999999999998775 677888888888887531
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC-----HHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQE 418 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~ 418 (2100)
+..+..+.+.|+++.|+.++...+ ...++
T Consensus 194 ----------------------------------------------~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~ 227 (529)
T 3tpo_A 194 ----------------------------------------------SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 227 (529)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHH
Confidence 223445566788899998887543 45788
Q ss_pred HHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCH
Q 000133 419 ELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA 498 (2100)
Q Consensus 419 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 498 (2100)
.++++|.+++.+...........+++|.|+.++.+++++++..|+++|++++.+..+....+...|+++.|+.+|.+++.
T Consensus 228 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~ 307 (529)
T 3tpo_A 228 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 307 (529)
T ss_dssp HHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh
Confidence 99999999998865544444445789999999999999999999999999998777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHH
Q 000133 499 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 578 (2100)
Q Consensus 499 ~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 578 (2100)
.++..++++|+|++.+++..+..+.+.|+++.|+.+|.++++.+++.|+++|+|++.+...
T Consensus 308 ~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~------------------- 368 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------------------- 368 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-------------------
T ss_pred hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-------------------
Confidence 9999999999999998889999999999999999999999999999999999999864321
Q ss_pred HHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhc
Q 000133 579 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 579 ~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~ 657 (2100)
....+.+.+++|.|+.++.+++.++++.|+|+|+|++.+ +++.+..+.+.|++++|+.+|.
T Consensus 369 ------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 369 ------------------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp ------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred ------------------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 122345678899999999999999999999999999874 4567788999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC-----CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 658 VGSECILVEASRCLAAIFLS-----VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~-----~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
+.+.+++..++.+|.++... ..+.....+.+.|+++.|..|..+++.++++.|...|..-+.
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999642 112234447899999999999999999999999998877663
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=334.69 Aligned_cols=380 Identities=18% Similarity=0.202 Sum_probs=305.5
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-ChH
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH-CKD 261 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~-~~~ 261 (2100)
..+.++.|+.+|++++++++..|+++|.+++..+..++..+++.|+||.|+++|.+++ .+++..|+++|+||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence 4688999999999999999999999999999888889999999999999999999865 68999999999999985 689
Q ss_pred hHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 262 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 262 ~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
+|..|+++||||+|+.+|.+.. +..++++++++|+||+..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~--------~~~~~e~aa~aL~nLS~~-------------------------------- 164 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKAR--------DMDLTEVITGTLWNLSSH-------------------------------- 164 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHTTS--------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHcCCC--------CHHHHHHHHHHHHHHhCC--------------------------------
Confidence 9999999999999999997532 256777888888877752
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh------------
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI------------ 409 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL------------ 409 (2100)
++++..+.+ ++++.|+.++
T Consensus 165 ------------------------------------------------~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 165 ------------------------------------------------DSIKMEIVD-HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp ------------------------------------------------GGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred ------------------------------------------------chhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence 222222332 3455555544
Q ss_pred ------cCCCHHHHHHHHHHHHHhhccCccchHHHHhCCc-HHHHHHhhCC------CCHHHHHHHHHHHHHhccCCc--
Q 000133 410 ------TMATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGL------SSEQQQECSVALLCLLSNEND-- 474 (2100)
Q Consensus 410 ------~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~s------~~~~v~~~A~~aL~nLs~~~~-- 474 (2100)
...+.+++++|+++|+||+..+++.++.+++.+| ++.|+.++++ .+...++.|+++|.||+....
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 2346899999999999999988888899988766 6899999874 467889999999999985311
Q ss_pred -----------------------ccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCC----hhhHHHHHhCC
Q 000133 475 -----------------------DSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHS----EDIRACVESAD 526 (2100)
Q Consensus 475 -----------------------~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~----~~~~~~i~~~g 526 (2100)
.....+...++++.|+.+|. +.++.+++.|+++|.|||... ..++..+.++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 01112223345677889996 458999999999999998753 24455666789
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccch
Q 000133 527 AVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDA 606 (2100)
Q Consensus 527 ~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~ 606 (2100)
++|.|+++|.++++.+++.|+++|+||+.+... +..+ ..++
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--------------------------------------~~~I-~~g~ 396 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARN--------------------------------------KELI-GKHA 396 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--------------------------------------HHHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--------------------------------------HHHH-HhCC
Confidence 999999999999999999999999999874432 1122 3567
Q ss_pred HHHHHHHhcCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC--CHHHHHHHHHHHHHHhc
Q 000133 607 VETMIKILSST--------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG--SECILVEASRCLAAIFL 676 (2100)
Q Consensus 607 i~~Lv~lL~s~--------~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~aa~aL~~L~~ 676 (2100)
+|.|+.+|.++ ++++...|+++|.||+..++++...+.+.|+||.|+.+++++ ++.+++.|+++|.+|..
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999876 578999999999999988899999999999999999999876 88999999999999977
Q ss_pred CCchhHHHHHHhCCChH
Q 000133 677 SVRENREVAAVARDALS 693 (2100)
Q Consensus 677 ~~~~~~~~~~~~~~~l~ 693 (2100)
+. ..+..+.+.|+=+
T Consensus 477 ~~--elr~~~kk~G~~~ 491 (584)
T 3l6x_A 477 YK--ELRKPLEKEGWKK 491 (584)
T ss_dssp SH--HHHHHHHTTTCCG
T ss_pred CH--HHHHHHHHcCCCH
Confidence 53 3444355555443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=330.91 Aligned_cols=369 Identities=17% Similarity=0.198 Sum_probs=292.4
Q ss_pred cCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC------------CHHHHHHHHHHH
Q 000133 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS------------SAEGQIAAAKTI 119 (2100)
Q Consensus 52 ~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~------------~~~~~~~A~~aL 119 (2100)
+...++.|++.+.+.+.+ ++.+.|..++.+++.|..+.+.|++|.||.+|+.. +++.+..|++||
T Consensus 30 ~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp ---------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 345678888888777665 58999999999999999999999999999999863 369999999999
Q ss_pred HHHhccCCCCcccccchhccCCh----------HHHHHHhhccC-CCc--c-hHH-------HHHHHHHHHhccCChhhH
Q 000133 120 YAVSQGGAKDYVGSKIFSTEGVV----------PVLWEQLKNGL-KSG--N-VVD-------NLLTGALRNLSTSTEGFW 178 (2100)
Q Consensus 120 ~~Ls~~~~~~~~~~~~~~~~g~v----------p~L~~lL~~~~-~~~--~-~v~-------~~a~~aL~nL~~~~~~~~ 178 (2100)
.||..+.. +. .....+.|++ +.+++++.... ..+ + .+. ..|.++|.|++.+ +.+|
T Consensus 107 ~ni~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 107 HNIIHSQP-DD--KRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHSC-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHccCc-ch--hHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999632 22 3344566777 66777776653 111 1 032 3789999999754 7899
Q ss_pred HHHHhcCCHHHHHHhHcc-----------CCHHHHHHHHHHHHHHhhcCcchhhHHhh-hchHHHHHHHhcCCCCHHHHH
Q 000133 179 AATVQAGGIDILVKLLTL-----------GQSSTQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEASVRA 246 (2100)
Q Consensus 179 ~~i~~~g~v~~Lv~lL~s-----------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~v~~ 246 (2100)
..|++.|++++|+.+|.. .++.++.+|+++|.+|+..++.++..+.. .|.+|.|+++|.+++ .+++.
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~ 261 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQ 261 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC-HHHHH
Confidence 999999999999999952 34678999999999999887766666654 556999999999754 68999
Q ss_pred HHHHHHHHhhcC-ChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCC
Q 000133 247 EAAGALKSLSDH-CKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCS 325 (2100)
Q Consensus 247 ~Aa~aL~~Ls~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~ 325 (2100)
.|+++|+||+.+ ++++|..+++.||||+|+.+|...
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s------------------------------------------- 298 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV------------------------------------------- 298 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-------------------------------------------
Confidence 999999999985 577888888889998888865321
Q ss_pred ChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHH
Q 000133 326 SPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLL 405 (2100)
Q Consensus 326 ~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~L 405 (2100)
T Consensus 299 -------------------------------------------------------------------------------- 298 (458)
T 3nmz_A 299 -------------------------------------------------------------------------------- 298 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCccchHHHH-hCCcHHHHHHhhCCCCH----HHHHHHHHHHHHhcc---CCcccH
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLISLLGLSSE----QQQECSVALLCLLSN---ENDDSK 477 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~----~v~~~A~~aL~nLs~---~~~~~~ 477 (2100)
.++.+++.|+.+|+||+..+++++..+. ..|+++.|+.+|.++++ ++++.|+++|+||+. .+++++
T Consensus 299 ------~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 372 (458)
T 3nmz_A 299 ------KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372 (458)
T ss_dssp ------CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 2345566677777777775555566666 78999999999997755 489999999999996 688999
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
..+.+.|++|+|+++|.+++.++++.|+|+|+||+..+++.+..+.+.|++|+|+++|+++++++++.|+++|.||+.+.
T Consensus 373 ~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 373 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999777999999999999999999999999999999999999998754
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=333.91 Aligned_cols=417 Identities=18% Similarity=0.184 Sum_probs=359.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCC-HHHHHHHHHHHHHhccCCcccH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~-~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..++.|+..+.++++.+|..|+++|+++..... .....+.+.|++|.|+.+|++++ +.++..|+++|++++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458899999999999999999999999976654 56788889999999999999887 9999999999999998778999
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHh-hcCChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
..+.+.|+++.|+.+|.++++.+++.|+|+|++|+..++..+..+.+.|++++|+.++ .+.++.++..++++|++|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888999999999999999999 567889999999999999875
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.... . .....++++.|+.++.++++.++..|+++|.+++.+.
T Consensus 234 ~~~~--------------~------------------------~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 234 KPQP--------------S------------------------FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp SSCC--------------C------------------------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred CCCC--------------c------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 4210 0 0112567999999999999999999999999999987
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALA 715 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~ 715 (2100)
++..+.+...|++|.|+.+|.++++.++..|+++|++++.+.. .....+++.|+++.|+.++.++ ++.++..|+++|+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7777888999999999999999999999999999999987654 4455578899999999999998 9999999999999
Q ss_pred HHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccch
Q 000133 716 NLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 794 (2100)
Q Consensus 716 ~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~ 794 (2100)
||+.+ ++....++..++++.|+.++.+++..++..|+++|.++..... .....++...|.+++++.++.+.+..+.
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~~~i~~L~~lL~~~d~~v~- 431 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS--HDQIKYLVSEGCIKPLCDLLICPDIRIV- 431 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHH-
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCCCHHHHHHHHcCCCHHHH-
Confidence 99965 4556677789999999999999999999999999999997632 2334445568999999999999888777
Q ss_pred HhHHHHHHHHHHcCCCC----CCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCc
Q 000133 795 SEALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 858 (2100)
Q Consensus 795 ~~al~~L~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~ 858 (2100)
..++.+|.++++..... +...+++...+...+.++.|...+.+.|+.+++.|..+|++||++..
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999998654320 00124456667778889999999999999999999999999986543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=331.26 Aligned_cols=410 Identities=16% Similarity=0.176 Sum_probs=353.1
Q ss_pred CCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCc-chhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 185 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 185 g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
..+|.+++.|.++++.++..|+..|.++..... .....+++.|+++.|+++|.++++.+++..|+++|.+++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 459999999999999999999999999976654 5678889999999999999987657899999999999999889999
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|++|.|+.++.+++ ..+++.|+++|.|++.+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~aL~~l~~~~--------------------------------- 191 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSS---------DDVREQAVWALGNVAGDS--------------------------------- 191 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHhCCcHHHHHHHhcCCC---------HHHHHHHHHHHHHHhCCC---------------------------------
Confidence 99999999999999998754 678888888888887521
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhh-cCCCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI-TMATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~ 422 (2100)
+..+..+.+.|+++.|+.++ .+.++.++..+++
T Consensus 192 ----------------------------------------------~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 192 ----------------------------------------------PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred ----------------------------------------------hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 11223445568899999999 5778999999999
Q ss_pred HHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHH
Q 000133 423 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502 (2100)
Q Consensus 423 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre 502 (2100)
+|.+|+...+..... ...++++.|+.++.++++.++..++++|++|+...++....+.+.|+++.|+.+|.++++.++.
T Consensus 226 ~L~~L~~~~~~~~~~-~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~ 304 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFE-QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304 (528)
T ss_dssp HHHHHHCSSSCCCHH-HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHcCCCCCcHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence 999999986444333 3579999999999999999999999999999976666678889999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 503 DSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 503 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
.|+++|++|+..++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++.....
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~---------------------- 362 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD---------------------- 362 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----------------------
Confidence 999999999998888888899999999999999998 899999999999999863211
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
....+...+++|.|+.+|.++++.++..|+++|++++.. .++....+...|++++|+.++.+.+
T Consensus 363 ---------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d 427 (528)
T 4b8j_A 363 ---------------QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427 (528)
T ss_dssp ---------------HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred ---------------HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 011233457799999999999999999999999999987 5678888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCch----------hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 661 ECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~----------~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
+.++..++.+|.+++..... .....+.+.|+++.|..+..++++++++.|..+|.++...
T Consensus 428 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999764322 1344578899999999999999999999999999998743
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=330.51 Aligned_cols=421 Identities=19% Similarity=0.206 Sum_probs=359.6
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccC-ccchHHHHhCCcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCccc
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNE-GSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDS 476 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~ 476 (2100)
.+.++.++..|.++++.+|..|+.+|+++.... ......+.+.|++|.|+.+|+++ ++.++..|+++|++++.+.++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 457899999999999999999999999986643 34567788899999999999997 8999999999999999877788
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
+..+++.|+++.|+++|.++++++|+.|+|+|++|+..++..+..+...|++++|+.++.+.++.++..++++|++|+.+
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999998888999999999999999999998999999999999999875
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.++. .. .....++++.|+.++.++++.++..|+++|.+|+...
T Consensus 246 ~~~~-------------~~------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 246 KKPQ-------------PD------------------------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp SSSC-------------CC------------------------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCC-------------Cc------------------------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4220 00 0112456999999999999999999999999999987
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
++....+...|++|.|+.++.+.+..++..|+.+|++++.+.. .....+.+.|+++.|+.++.+++++++..|+++|++
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7888888899999999999999999999999999999987654 444447888999999999999999999999999999
Q ss_pred HhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchH
Q 000133 717 LILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATS 795 (2100)
Q Consensus 717 L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~ 795 (2100)
|+.+ ++....++..++++.|+.++.+++..++..|+++|.++............++...|+++.++.++.+.+..+. .
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~-~ 446 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII-E 446 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH-H
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH-H
Confidence 9965 5566677789999999999999999999999999999998643211233445568999999999998877777 8
Q ss_pred hHHHHHHHHHHcCCCC----CCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCc
Q 000133 796 EALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 858 (2100)
Q Consensus 796 ~al~~L~~L~~~~~~~----~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~ 858 (2100)
.++.+|.+++...+.. ....+++...+...+.++.|...+.+.++.+++.|..+|++++++..
T Consensus 447 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 447 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999998754320 01123445566678889999999999999999999999999986543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=326.60 Aligned_cols=417 Identities=20% Similarity=0.183 Sum_probs=317.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC
Q 000133 95 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 174 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~ 174 (2100)
..+|.|+.+|++++++.+..|+.+|.+++.+ +...+..+.+.|++|.|+++|++ .++.++..++++|+||+..+
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSS---CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCC
Confidence 3589999999999999999999999999972 33335578899999999999986 34568899999999999887
Q ss_pred hhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc--------CC------
Q 000133 175 EGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG--------SG------ 239 (2100)
Q Consensus 175 ~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--------~~------ 239 (2100)
+.++..++++|+||.|+++|+ ++++++++.++++|++++.. +..+..+++ |++|.|+++|. ++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 889999999999999999999 88999999999999999987 558888888 99999999993 22
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHhHHHHHhC-CChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhc
Q 000133 240 -NEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSL 317 (2100)
Q Consensus 240 -~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l 317 (2100)
.+.++...|+++|+||+.+ ++++..+++. |++++|+.++.+.. ..+..+..++++++++|+|++......+...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCV---AASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHH---HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhc---cccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 2456788999999999985 8999999998 99999999996420 0111234578899999999986321110000
Q ss_pred cccc-cCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH---hCCCccc
Q 000133 318 GQSL-ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL---YGNPLLS 393 (2100)
Q Consensus 318 ~~~~-~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L---~~~~~~~ 393 (2100)
...+ ..++......+..|++.. .... ++... ..+ .+ ..+++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~-~~~~~-~~~-~~~~~~~~~~~~ 276 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSN------------------------------KSDK-MMNNN-YDC-PLPEEETNPKGS 276 (457)
T ss_dssp HHHHHHTC-------------------------------------------------------------CCCCCSSCCGG
T ss_pred hhhcccccccccccccccchhhc------------------------------cchh-hhhcc-ccC-CccccccCchHH
Confidence 0000 000000000000000000 0000 00000 000 00 1234455
Q ss_pred hhhhccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCccc-----hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000133 394 IKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSL-----WRALQGREGIQLLISLLGLSSEQQQECSVALLC 467 (2100)
Q Consensus 394 ~~l~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~~-----~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~ 467 (2100)
..+.+.++++.|+.+|. +.++.+++.|+++|.||+.++... +..+.+.|++|.|+++|.+++.+++..|+++|+
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 67788899999999997 457999999999999999876542 234457899999999999999999999999999
Q ss_pred HhccCCcccHHHHHhcCChHHHHHhccCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-Ch
Q 000133 468 LLSNENDDSKWAITAAGGIPPLVQILESGS------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SA 540 (2100)
Q Consensus 468 nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~ 540 (2100)
||+. +++.+..+. .|++|+|+++|..++ +++...++++|.|+...+++....+.+.|++++|++++.++ ++
T Consensus 357 nls~-~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSR-HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHT-SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhc-CHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 9996 566665554 579999999998763 46888999999999988888999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 000133 541 NGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 541 ~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++.|+++|.+++.+.+
T Consensus 435 ~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 435 KAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHcchh
Confidence 999999999999988664
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=322.38 Aligned_cols=391 Identities=16% Similarity=0.140 Sum_probs=295.4
Q ss_pred HHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-----------CHHHHHHHHHHHHHh
Q 000133 187 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-----------EASVRAEAAGALKSL 255 (2100)
Q Consensus 187 v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----------~~~v~~~Aa~aL~~L 255 (2100)
++.|+..+.+.+++ ...+.|..+.... +.|..+++.|++|.|+++|..+. +.+++..|+|+|.|+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~-~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSST-THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCC-cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 66777777777666 2566665666544 47788999999999999999743 269999999999999
Q ss_pred hcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhh
Q 000133 256 SDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLG 335 (2100)
Q Consensus 256 s~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~g 335 (2100)
+.+.++......+.|.++. +..+. .+....+.-+.... ++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-l~~~~----------------~~~~~~~~~~~~~~-----------~~~~---------- 151 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHL-LEQIR----------------AYCETCWEWQEAHE-----------PGMD---------- 151 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHH-HHHHH----------------HHHHHHHHHHTTTS-----------SSSC----------
T ss_pred HccCcchhHHHHHHHHHHH-HHHhh----------------hhhHHHHHHHHhhc-----------cccc----------
Confidence 9988887777666655544 22221 11111111011000 0000
Q ss_pred hhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC----
Q 000133 336 ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM---- 411 (2100)
Q Consensus 336 al~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~---- 411 (2100)
+.+ .+ + ..+.+..+-.|+.+|.+++.++++|+.+.+.|++++|+.++..
T Consensus 152 -------------~~~---~~--~---------~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~ 204 (458)
T 3nmz_A 152 -------------QDK---NP--M---------PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 204 (458)
T ss_dssp -------------CCS---CC-------------CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -------------ccc---CC--c---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcc
Confidence 000 00 0 0000112447899999998889999999999999999999952
Q ss_pred -------CCHHHHHHHHHHHHHhhccCccchHHHHhCCc-HHHHHHhhCCCCHHHHHHHHHHHHHhccC-CcccHHHHHh
Q 000133 412 -------ATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITA 482 (2100)
Q Consensus 412 -------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~-~~~~~~~i~~ 482 (2100)
.++.+++.|+++|.||+.+++.++..+...+| ||.|+.+|+++++++++.|+++|+||+.. +++++..+.+
T Consensus 205 ~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~ 284 (458)
T 3nmz_A 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284 (458)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 24678999999999999987777777765555 99999999999999999999999999964 4678999999
Q ss_pred cCChHHHHHhc-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCcHHHHHHHhhcCCh----hHHHHHHHHHHHHhcC
Q 000133 483 AGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRACVE-SADAVPALLWLLKNGSA----NGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 483 ~g~i~~Lv~lL-~~~~~~vre~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~----~~~~~Aa~aL~~L~~~ 556 (2100)
.|+||+|+++| .++++.+++.|+.+|+||+.++++++..+. ..|++|+|+++|.++++ .+++.|+++|+||+.+
T Consensus 285 ~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 285 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 99999999974 567899999999999999986678888887 79999999999998655 3899999999999741
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+...++ .+..+.+.|++|.|+.+|++++..+++.|+++|+|++..+
T Consensus 365 ---------------------------------~a~~~~-~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 365 ---------------------------------IATNED-HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp ---------------------------------HTTCHH-HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred ---------------------------------ccCCHH-HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 000011 2335567889999999999999999999999999999877
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
++.+..+.+.|++|+|+.++.+++..+++.|+.+|.||+.+.+.
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 89999999999999999999999999999999999999887653
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=325.76 Aligned_cols=413 Identities=14% Similarity=0.157 Sum_probs=351.8
Q ss_pred hcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcC-cchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChH
Q 000133 183 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD 261 (2100)
Q Consensus 183 ~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~ 261 (2100)
..+.++.++..|+++++.++..|+..|.++.... ......+++.|+++.|+++|.++.+.+++..|+++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3477999999999999999999999999987543 345677888999999999999875578999999999999998888
Q ss_pred hHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHH
Q 000133 262 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 341 (2100)
Q Consensus 262 ~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 341 (2100)
.+..+++.|+++.|+.++.+++ ..+++.|+++|.|++...
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~---------~~vr~~A~~aL~~l~~~~------------------------------- 204 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS---------VEVKEQAIWALGNVAGDS------------------------------- 204 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC---------HHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhCCC-------------------------------
Confidence 9999999999999999997653 678888888888887531
Q ss_pred HHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHH
Q 000133 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 421 (2100)
Q Consensus 342 ~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 421 (2100)
+..+..+...|+++.|+.++.+.++.++..|+
T Consensus 205 ------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 205 ------------------------------------------------TDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp ------------------------------------------------HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred ------------------------------------------------ccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 11223444568899999999999999999999
Q ss_pred HHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHH
Q 000133 422 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 501 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vr 501 (2100)
++|.+|+.+...........++++.|+.++.++++.++..++++|++|+...++....+.+.|+++.|+.+|.++++.++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 99999998763333344557999999999999999999999999999997667778888999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
..|+++|++++..++.....+.+.|+++.|+.+|+++++.++..|+++|++++..... .
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~----------------~----- 375 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----------------Q----- 375 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----------------H-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------H-----
Confidence 9999999999988788888888999999999999999999999999999999763211 0
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-h--hhHHHHHhcCchHHHHHhhcC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR-K--DLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~-~--~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
++ .+.+.+++|.|+.+|.++++.++..|+++|++++... + +....+...|++++|+.++.+
T Consensus 376 ---------------~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 376 ---------------IQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp ---------------HH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred ---------------HH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 11 2234577999999999999999999999999999753 3 677788899999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCch----------hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 659 GSECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 659 ~~~~v~~~aa~aL~~L~~~~~~----------~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
.++.++..++.+|.+++...+. .....+.+.|+++.|..++.++++++++.|..+|.++...
T Consensus 440 ~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 440 ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999999999764321 1234478899999999999999999999999999999854
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-28 Score=313.48 Aligned_cols=410 Identities=16% Similarity=0.153 Sum_probs=343.6
Q ss_pred CHHHHHHhHccCCHHHHHHHHHHHHHHhh-cCcchhhHHhhh-chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 186 GIDILVKLLTLGQSSTQAHVCFLLACMME-EDVSVCSRVLAA-DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 186 ~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
.++.+++.++++++.++..|+..|.++.. ........+++. |.++.|+++|+++.+.+++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 48899999999999999999999998865 222234556666 9999999999987567899999999999999888888
Q ss_pred HHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHH
Q 000133 264 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 343 (2100)
Q Consensus 264 ~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 343 (2100)
..+++.|++|.|+.++.+++ ..+++.++++|.|++...
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~---------~~vr~~a~~~L~~l~~~~--------------------------------- 138 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEF---------EDVQEQAVWALGNIAGDS--------------------------------- 138 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHccCC---------------------------------
Confidence 88899999999999997654 677888888888777531
Q ss_pred hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-CCHHHHHHHHH
Q 000133 344 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVR 422 (2100)
Q Consensus 344 l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~ 422 (2100)
+..+..+.+.|+++.|+.++.+ .+..++..|++
T Consensus 139 ----------------------------------------------~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 139 ----------------------------------------------TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 1122334456889999999985 78999999999
Q ss_pred HHHHhhccC-ccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHH
Q 000133 423 ALLKLCNNE-GSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 501 (2100)
Q Consensus 423 aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vr 501 (2100)
+|.+++.+. +.....+. .++++.|+.+++++++.++..++++|.+++...++....+...|+++.|+++|.+++++++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 999999765 33333333 6899999999999999999999999999997667778888899999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHH
Q 000133 502 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 581 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 581 (2100)
+.|+++|++++..++..+..+.+.|+++.|+.+++++++.++..|+++|++++...+. .
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~----------------~----- 310 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA----------------Q----- 310 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH----------------H-----
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------H-----
Confidence 9999999999998777777888899999999999999999999999999999763211 0
Q ss_pred HHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCchHHHHHhhcCCC
Q 000133 582 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 582 ~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
.+ .+.+.+++|.|+.+|.++++.+|+.|+++|++++.+ +++....+...|++|.|+.++.+.+
T Consensus 311 ---------------~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 374 (450)
T 2jdq_A 311 ---------------IQ-TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374 (450)
T ss_dssp ---------------HH-HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC
T ss_pred ---------------HH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 11 233457799999999999999999999999999975 4667777888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchh----------HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc
Q 000133 661 ECILVEASRCLAAIFLSVREN----------REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS 721 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~~----------~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~ 721 (2100)
..++..++.+|.+++...+.. ....+.+.|+++.|..++.+++.++++.|..+|.++..+.
T Consensus 375 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 999999999999998643221 1234778899999999999999999999999999998543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=316.65 Aligned_cols=357 Identities=17% Similarity=0.158 Sum_probs=302.0
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHh-CCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLY-GNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 438 (2100)
++.|+.+|++++++ +|..|+.+|.+++ +++..+..+.+.|+++.|+.+|+++++.+|..|+++|+||+.++++++..+
T Consensus 4 l~~lv~~L~s~~~~-~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEK-YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTH-HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 56678888877654 7999999999995 556677789999999999999999999999999999999999888999999
Q ss_pred HhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhc--------cCC--------CHHHH
Q 000133 439 QGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL--------ESG--------SAKAK 501 (2100)
Q Consensus 439 ~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL--------~~~--------~~~vr 501 (2100)
++.|+||.|+++|+ ++++++++.|+++|+||+.+ ++.+..+.+ |++|+|+++| +++ ++.++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999974 888998999 9999999999 333 34556
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHHhhc------CChhHHHHHHHHHHHHhcCC-----------------
Q 000133 502 EDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKN------GSANGKEIAAKTLNHLIHKS----------------- 557 (2100)
Q Consensus 502 e~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~------~~~~~~~~Aa~aL~~L~~~~----------------- 557 (2100)
+.|+|+|+||+.+ ++++..+.+. |++++|+.++++ .+.++++.+..+|++|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6999999999986 8899999987 999999999986 35678899999999997410
Q ss_pred -----------------------------------------CCCcHHHHHHHhhcC-CcchHHHHHHHHHHHHhccCc-h
Q 000133 558 -----------------------------------------DTATISQLTALLTSD-LPESKVYVLDALKSMLSVVSF-S 594 (2100)
Q Consensus 558 -----------------------------------------~~~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~~~~~-~ 594 (2100)
+.++++.|+.+|.+. ++++++.+..+|++++.-... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 124577888888754 578999999999999875433 2
Q ss_pred hHH-HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCC------HHHHHHH
Q 000133 595 DIL-REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS------ECILVEA 667 (2100)
Q Consensus 595 ~~~-~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~v~~~a 667 (2100)
..+ +..+.+.+|+|.|+++|.++++++++.|+|+|.|++.+ +..+.. +..|++|+|+++|.+.+ ++++..+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~-i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHH-HHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 223 55666789999999999999999999999999999986 455544 45589999999997763 4688899
Q ss_pred HHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHH
Q 000133 668 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEV 723 (2100)
Q Consensus 668 a~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~ 723 (2100)
+.+|.++..+.+ .+...+.+.|+++.|++++.++ ++++++.|++.|.++..+.+.
T Consensus 398 l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 398 CYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred HHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence 999999987665 4555588999999999999999 999999999999999866553
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=305.83 Aligned_cols=401 Identities=15% Similarity=0.137 Sum_probs=345.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhC-CcHHHHHHhhCCC-CHHHHHHHHHHHHHhccCCcccH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGR-EGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~s~-~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
.++.+++.++++++.+|..|+.+|+.+.. ......+.+.+. |+++.|+++++++ ++.++..|+++|++++.+.++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 37789999999999999999999999764 222333456666 8999999999998 89999999999999998777888
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~ 556 (2100)
..+.+.|++|.|+++|.++++++|+.|+++|++++..+++.+..+.+.|+++.|+.++++ .++.++..++++|++++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999999888899999999999999999996 6889999999999999976
Q ss_pred CC--------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHH
Q 000133 557 SD--------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 628 (2100)
Q Consensus 557 ~~--------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~a 628 (2100)
.+ .+.+|.|+.++.+++++++..+..+|++++...+ + ....+...++++.|+.+|.++++.++..|+++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN--D-KIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH--H-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc--H-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 42 3689999999999999999999999998875432 2 22344567889999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHH
Q 000133 629 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 708 (2100)
Q Consensus 629 L~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~ 708 (2100)
|++++.+.++..+.+...|+++.|+.++.++++.++..|+++|++++.+.. .....+.+.++++.|++++.++++++|.
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 999999877777788889999999999999999999999999999987654 3344477889999999999999999999
Q ss_pred HHHHHHHHHhc--CcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccc--------hhHhhhhhccCcH
Q 000133 709 QATCALANLIL--DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKID--------YTITDCVNRAGTV 778 (2100)
Q Consensus 709 ~aa~aL~~L~~--~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~--------~~~~~~~~~~g~l 778 (2100)
.|+++|++++. +++....++..++++.|+.++++++..++..|.++|.++....+.. ..+...+...|++
T Consensus 337 ~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 416 (450)
T 2jdq_A 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416 (450)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcH
Confidence 99999999985 4566677778899999999999999999999999999999754321 2344555668889
Q ss_pred HHHHHhhhhcccccchHhHHHHHHHHHH
Q 000133 779 LALVSFLESASGSVATSEALDALAILSR 806 (2100)
Q Consensus 779 ~~li~~l~s~~~~v~~~~al~~L~~L~~ 806 (2100)
..+..+..+.+..+. +.++.+|.++..
T Consensus 417 ~~l~~l~~~~~~~v~-~~a~~~l~~~~~ 443 (450)
T 2jdq_A 417 DKIEFLQSHENQEIY-QKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHCHHHHHHH-HHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHH-HHHHHHHHHHCC
Confidence 988888877777777 999999999863
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=274.33 Aligned_cols=269 Identities=20% Similarity=0.155 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC-----------CCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-----------SSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
..+..|+++|.|++.+ +++++.|.+.|++++|+.+|.. .++.+|++|+++|.||+.++++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4456899999999998 7899999999999999999952 246799999999999998666678878665
Q ss_pred CC-hHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCCC
Q 000133 484 GG-IPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHKSDTA 560 (2100)
Q Consensus 484 g~-i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~aL~~L~~~~~~~ 560 (2100)
+| ||.|+++|.++++++++.|+|+|.||+.. ++++|..+.+.|++|+|+++| +++++.+++.|+.+|+||+.+.+.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~- 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE- 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh-
Confidence 55 99999999999999999999999999984 578999999999999999975 567889999999999999873321
Q ss_pred cHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhh-ccchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc-
Q 000133 561 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA-ANDAVETMIKILSSTKE----ETQAKSASALAGIFE- 634 (2100)
Q Consensus 561 ~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~s~~~----~~~~~Aa~aL~~L~~- 634 (2100)
.+..+. ..|++|.|+++|.++++ ++++.|+++|.||+.
T Consensus 205 ------------------------------------nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 205 ------------------------------------NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp ------------------------------------HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 111233 57899999999987765 599999999999997
Q ss_pred --CChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000133 635 --TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 712 (2100)
Q Consensus 635 --~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~ 712 (2100)
.+++.+..+.+.|++|+|+.+|++++..+++.|+++|.|++.+.+ .++..+.+.|++++|+++++++++++++.|++
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 568899999999999999999999999999999999999976554 56666899999999999999999999999999
Q ss_pred HHHHHhcCcH
Q 000133 713 ALANLILDSE 722 (2100)
Q Consensus 713 aL~~L~~~~~ 722 (2100)
||.||+.+.+
T Consensus 328 aL~nL~~~~~ 337 (354)
T 3nmw_A 328 ALRNLMANRP 337 (354)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCH
Confidence 9999996644
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=272.09 Aligned_cols=273 Identities=16% Similarity=0.131 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhccCccchHHHHhCCc
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-----------ATNEVQEELVRALLKLCNNEGSLWRALQGREG 443 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 443 (2100)
.+..|+.+|.+++.++++|+.+.+.|+++.|+.+|.+ .++.+|+.|+++|.||+.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4567899999998889999999999999999999952 24679999999999999987777777765555
Q ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHhccC-CcccHHHHHhcCChHHHHHhc-cCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 444 -IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITAAGGIPPLVQIL-ESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 444 -i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
||.|+.+|+++++++++.|+++|+||+.. +++++..+.+.|+||+|+++| +++++++++.|+++|+||+.++++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999964 467899999999999999974 667899999999999999987778888
Q ss_pred HHH-hCCcHHHHHHHhhcCCh----hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 521 CVE-SADAVPALLWLLKNGSA----NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 521 ~i~-~~g~i~~Lv~lL~~~~~----~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
.+. ..|++|+|+++|+++++ .+++.|+++|+||+.+ +...++
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~---------------------------------~a~~~~ 254 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL---------------------------------IATNED 254 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH---------------------------------HTTCHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh---------------------------------ccCCHH
Confidence 887 79999999999998655 4889999999999741 000111
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+..+.+.|++|.|+.+|++++..+++.|+++|+||+..+++.+..+.+.|++|+|+.++++++..+++.|+.+|.+|+
T Consensus 255 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 255 -HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2345667889999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred cCCchh
Q 000133 676 LSVREN 681 (2100)
Q Consensus 676 ~~~~~~ 681 (2100)
.+.++.
T Consensus 334 ~~~~~~ 339 (354)
T 3nmw_A 334 ANRPAK 339 (354)
T ss_dssp TTCCGG
T ss_pred cCCHHH
Confidence 887653
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-22 Score=254.66 Aligned_cols=446 Identities=14% Similarity=0.116 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHHHhhcCcchhhH-HhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHh
Q 000133 200 STQAHVCFLLACMMEEDVSVCSR-VLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINA 278 (2100)
Q Consensus 200 ~v~~~a~~~L~~L~~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~l 278 (2100)
+....+..+|..+---.++.+.. +...|..+.+.+.+.+.++..+...+...|...+. +..+|.+| ..+.++.|...
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi-~~~cR~~I-~~~~~~~L~~~ 304 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACI-DETMRTYI-TENYLQLLERS 304 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC-SHHHHHHH-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhC-CcHHHHHH-HHhHHHHHHHH
Confidence 33445555555454444444444 46778889898888776665555555555555554 67777777 44566888777
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchh
Q 000133 279 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 358 (2100)
Q Consensus 279 l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~ 358 (2100)
+.+ ..++..|+-+|+.+..
T Consensus 305 l~~-----------~~ir~lAavvL~KL~~-------------------------------------------------- 323 (778)
T 3opb_A 305 LNV-----------EDVQIYSALVLVKTWS-------------------------------------------------- 323 (778)
T ss_dssp TTS-----------GGGHHHHHHHHHHHTG--------------------------------------------------
T ss_pred hcc-----------HHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 743 1233444444443221
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCcc-chhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL-SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.+.. ...+. ...+.+...+..++.+.++.|++.|+.++.. ++.++.
T Consensus 324 ------------------------------~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~ 370 (778)
T 3opb_A 324 ------------------------------FTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIM 370 (778)
T ss_dssp ------------------------------GGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHH
T ss_pred ------------------------------CCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHH
Confidence 0000 00010 1234456666666666699999999999987 566777
Q ss_pred HHhCCc-HHHHHHhhCC-CCHHHHHHHHHHHHHhccCCcc--------------------------------------cH
Q 000133 438 LQGREG-IQLLISLLGL-SSEQQQECSVALLCLLSNENDD--------------------------------------SK 477 (2100)
Q Consensus 438 i~~~g~-i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~--------------------------------------~~ 477 (2100)
+++..+ ++.|+.++++ .+..+.+.++.+|.||+...+. ++
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 766555 9999999995 7788999999999999873331 35
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChh---HHHHHHHHHHHHh
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN---GKEIAAKTLNHLI 554 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~Aa~aL~~L~ 554 (2100)
..+.++|++|.|+.++.++++.+|+.|+++|.||+.. +++|..++++|++++|+.++.+++.. ++..|+.+|.++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999974 89999999999999999999998654 8999999999998
Q ss_pred cCCC----------CCcHHHHHHHhhc--CCcc------------hHHHHHHHHHHHHhccCch-hHHHHhhhc-cchHH
Q 000133 555 HKSD----------TATISQLTALLTS--DLPE------------SKVYVLDALKSMLSVVSFS-DILREGSAA-NDAVE 608 (2100)
Q Consensus 555 ~~~~----------~~~i~~L~~lL~~--~~~~------------~~~~a~~aL~~l~~~~~~~-~~~~~~i~~-~~~i~ 608 (2100)
...+ .+++++|+.+|.. +... .+..|+.||.+++...++. +-.+..+.. .++++
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 6443 2789999999983 2111 1567888888888775431 224455555 48999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHh------cCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIA------VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~-~~~~~------~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
.|..+|.++++.+|++|+++++||+.+ ++.+ ..+.. .+.+++|+.++++++.++++.|+++|++++.+.+..
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 999999999999999999999999986 4432 23322 224889999999999999999999999997655434
Q ss_pred HHHHHHhC-CChHHHHHHhCC--CCHHHHHHHHHHHHHHhc----Cc--HHHHHHH-HcCcHHHHHHHHccCC
Q 000133 682 REVAAVAR-DALSPLVVLAGS--PVLEVAEQATCALANLIL----DS--EVSEKAI-AEEIILPATRVLCEGT 744 (2100)
Q Consensus 682 ~~~~~~~~-~~l~~Lv~ll~~--~~~evr~~aa~aL~~L~~----~~--~~~~~~v-~~~~v~~L~~ll~~~~ 744 (2100)
.+. +++. ++++.|+.++.+ ++++++++++.++.||+. +. +....+. +......|.+.+++++
T Consensus 689 a~~-ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 689 AKE-LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHH-HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 444 5565 799999999998 899999999999999984 22 2223333 3445555555555544
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-20 Score=271.20 Aligned_cols=1044 Identities=13% Similarity=0.076 Sum_probs=626.1
Q ss_pred ChHHHHHHHHHHHHHhCCCccc-hhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 372 PFLVQERTIEALASLYGNPLLS-IKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
+..+|..|...|.+....+... ..-.....++.++..+.+.++.+|..|+.+|..++...+. ..+ ...++.|+..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~ 94 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTN 94 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHH
Confidence 4457888888888764433211 1011124567788888899999999999999999875433 111 1356888888
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCccc-----HHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChh-hHHHHH
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDDS-----KWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSED-IRACVE 523 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~~-----~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~-~~~~i~ 523 (2100)
+.++++.+|..|+.+|..++...... ...-.-...+|.|+..+. +++..+|+.|+.+|..++...+. ....
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-- 172 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-- 172 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--
Confidence 88999999999999999987543322 011122346899999998 47899999999999999853211 1000
Q ss_pred hCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCC-cchHHHHHHHHHHHHhccCchhHHH
Q 000133 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDL-PESKVYVLDALKSMLSVVSFSDILR 598 (2100)
Q Consensus 524 ~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~-~~~~~~a~~aL~~l~~~~~~~~~~~ 598 (2100)
-...++.|+..+.+.++.+++.|+.+|..++..... ..++.++..+.+.. +.+|..+.++++.++...+.. +.
T Consensus 173 ~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~ 250 (1230)
T 1u6g_C 173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IG 250 (1230)
T ss_dssp HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HH
Confidence 023567788888888899999999999999875432 45788888776553 467888899999887654321 11
Q ss_pred HhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--------------------
Q 000133 599 EGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-------------------- 658 (2100)
Q Consensus 599 ~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-------------------- 658 (2100)
.. -...+|.++..+.+.++++|+.+..++..++...++... ......+|.+++.+..
T Consensus 251 ~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 251 EY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC-------------------
T ss_pred HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 11 135689999999999999999999999999876443211 1223456666665531
Q ss_pred -----------------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-
Q 000133 659 -----------------GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD- 720 (2100)
Q Consensus 659 -----------------~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~- 720 (2100)
.+..+++.|+.++..++...++. ....-...++.|+..+++.++++|..+..++..++..
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTT--HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 01246888999999987644321 1123356788888888899999999999999888631
Q ss_pred ------------------cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHH
Q 000133 721 ------------------SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALV 782 (2100)
Q Consensus 721 ------------------~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li 782 (2100)
+.......-+.+++.+.+.+++++..+|..+..+|..+....+.. +.. .....++.++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~--l~~--~l~~ll~~l~ 481 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA--LTQ--HIPVLVPGII 481 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--TGG--GHHHHHHHHH
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--hHH--HHHHHHHHHH
Confidence 112223345678888888899988889999999999998764321 111 1244567777
Q ss_pred Hhhhhccc--ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc-
Q 000133 783 SFLESASG--SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA- 859 (2100)
Q Consensus 783 ~~l~s~~~--~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~- 859 (2100)
..+..... .+. ..++..+..+.+..... ...-.++..++.|+.++.+.+..++..+..++..+...-..
T Consensus 482 ~~L~d~~~~~~v~-~~a~~~l~~~~~~~~~~-------~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 482 FSLNDKSSSSNLK-IDALSCLYVILCNHSPQ-------VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHTTCSSSCHHHH-HHHHHHHHHHHHSSCGG-------GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCCCcchHH-HHHHHHHHHHHHhCCHH-------HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc
Confidence 77776543 444 88888888886543220 11113456888899999999998988888888766410000
Q ss_pred --cchhcccccccchHHHHHHHh--hcCCcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCC
Q 000133 860 --VLGDEVTGASGCISSIARRVI--SCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPL 935 (2100)
Q Consensus 860 --~~g~~~~~~~~~~~~~~~~~l--~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~ 935 (2100)
..+..+..--......+...+ .+.++++|..+.+.+..+++.... .. ...+..++++|......
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~---------~~-~~~~~~~l~~L~~~l~~-- 621 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD---------NL-GSDLPNTLQIFLERLKN-- 621 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG---------GC-CTHHHHHHHHHHHHTTS--
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc---------hh-hhhHHHHHHHHHHHhcc--
Confidence 000000000001112223334 566788999999998888865211 11 12234444444333211
Q ss_pred cCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCchhHHHHHHHHhccCccchhhhhhccchhhhhhhhhhccccccc
Q 000133 936 RNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQ 1015 (2100)
Q Consensus 936 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (2100)
......++.++..++...
T Consensus 622 ---e~~r~~~~~al~~i~~~~----------------------------------------------------------- 639 (1230)
T 1u6g_C 622 ---EITRLTTVKALTLIAGSP----------------------------------------------------------- 639 (1230)
T ss_dssp ---SSHHHHHHHHHHHHTTCS-----------------------------------------------------------
T ss_pred ---chhHHHHHHHHHHHHhCc-----------------------------------------------------------
Confidence 111122222222211000
Q ss_pred cccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchh
Q 000133 1016 MDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGG 1095 (2100)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1095 (2100)
.+.+-..|+. ..+|.|...+++++...|..++.++..+.......... .-
T Consensus 640 --~~~~~~~~~~--------------------~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~--------~~ 689 (1230)
T 1u6g_C 640 --LKIDLRPVLG--------------------EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA--------AM 689 (1230)
T ss_dssp --SCCCCHHHHH--------------------HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH--------HH
T ss_pred --cccchHHHHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCH--------HH
Confidence 0001122321 55566666666666666666666776665544322100 11
Q ss_pred hHHhhc----ccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccC---ccccccHHHHHHhcCCCCCCCCchHHHH
Q 000133 1096 LISLLG----CADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVG---ATSRKAIPALVDLLKPIPDRPGAPFLAL 1168 (2100)
Q Consensus 1096 ~~~l~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~~~---~~~~~~i~~Lv~~l~~~~~~~~~~~~Al 1168 (2100)
+..++. ....+++.. .+.+++.|..+.+.... ......++.++..+++.. .++....++
T Consensus 690 v~~~l~~ll~ll~~~D~~~-------------~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~l 755 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHV-------------SQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL-LQGGALSAM 755 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHH-------------HHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT-CCHHHHHHH
T ss_pred HHHHHHHHHhhcCcchHHH-------------HHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc-cchHHHHHH
Confidence 111111 112222222 23456666655433322 245678888888886432 121111111
Q ss_pred -HHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcC----Cc---chH-HHHHHHHHHHh-hc-CHHHHhhhcccCcHHHHH
Q 000133 1169 -GFLIQLAKDCPSNKIVMVEAGALEALTKYLSLG----PQ---DAT-EEAATDLLGIL-FS-SAEIRRHESAFAAVSQLV 1237 (2100)
Q Consensus 1169 -~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~----~~---~~~-~~~~~~ll~~l-~~-~~~~~~~~~~~~al~~Li 1237 (2100)
...+.+...++. ....+.++..|-.. .. +.| ...+...++.+ .. .+.. ...++.++
T Consensus 756 ~~~~~~l~~~~~~-------~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~------~~~~~~~~ 822 (1230)
T 1u6g_C 756 LDFFQALVVTGTN-------NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG------PAVVGQFI 822 (1230)
T ss_dssp HHHHHHHHTTCCT-------TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS------HHHHTTTT
T ss_pred HHHHHHHHhcCCC-------CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh------HHHHHHHH
Confidence 122233322110 11345555544321 11 111 11122222221 11 1100 12344444
Q ss_pred HHHhc--CCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhc
Q 000133 1238 AVLRL--GGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEM 1315 (2100)
Q Consensus 1238 ~~L~~--~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~ 1315 (2100)
..+++ .++..+..+..+|+.++...+.. ..++.++.++..|.+.++.++.+|+.+|+.++.++..
T Consensus 823 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~---~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~---------- 889 (1230)
T 1u6g_C 823 QDVKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP---------- 889 (1230)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH----------
T ss_pred HHhCCCCccHHHHHHHHHHHHHhcccCCCc---ccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH----------
Confidence 44543 34555666666677654311110 0134578888999999999999999999999843321
Q ss_pred chhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcc-hHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHH
Q 000133 1316 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR-IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAEL 1394 (2100)
Q Consensus 1316 gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~-~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 1394 (2100)
..++.+++.+... ...+......+..+..... ...........+.|+..+.+.++..+..++..|+.++...
T Consensus 890 ~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~----- 962 (1230)
T 1u6g_C 890 EYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID----- 962 (1230)
T ss_dssp HHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS-----
T ss_pred HHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC-----
Confidence 2467777777654 3567777777776654321 1111111223344444455567778999999999998421
Q ss_pred HHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCC
Q 000133 1395 VAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGI 1474 (2100)
Q Consensus 1395 ~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~ 1474 (2100)
...++|.|...+.+.++.+|..++.++..+..+.+..-.... ...++.+++.|.+++..+|..+...+..++++...
T Consensus 963 --~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l-~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~ 1039 (1230)
T 1u6g_C 963 --PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1039 (1230)
T ss_dssp --GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGG
T ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChH
Confidence 145789999999999999999999888887665432211111 12456667788888888999988888877765432
Q ss_pred cccccccCchHHHHHHhccC----------------CCCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCC
Q 000133 1475 AKGPSAAKVVEPLFLLLTRS----------------EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS 1538 (2100)
Q Consensus 1475 ~~~~~~~~~v~~Ll~ll~~~----------------~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~ 1538 (2100)
.-.......++.|+....-. ++|-+++++|.++++.|.+...+. + ....+++.++.-|.+
T Consensus 1040 ~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~--i--~~~~~~~~~~~gl~d 1115 (1230)
T 1u6g_C 1040 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR--L--DIFEFLNHVEDGLKD 1115 (1230)
T ss_dssp GTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS--S--CHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHcccCc
Confidence 22223344556655544211 244589999999999998764332 2 344577888888888
Q ss_pred CCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhcc------------CCHHHHHHHHHHHHHhhcCC
Q 000133 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGS------------GIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1539 ~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s------------~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
. .+++..+...|.++.........-.-...+++|.+.|+. ...+.++.+++++..|...+
T Consensus 1116 ~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~ 1187 (1230)
T 1u6g_C 1116 H-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIP 1187 (1230)
T ss_dssp C-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred h-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 899999999999997643322222223567888888743 33788999999999988654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=250.14 Aligned_cols=523 Identities=12% Similarity=0.099 Sum_probs=351.8
Q ss_pred hHHHHHHHh--cCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh-c-CCCHHH--HHHHHHHHHHHhccCCCC
Q 000133 56 VPVLVSLLR--SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL-K-SSSAEG--QIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 56 v~~L~~lL~--~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL-~-s~~~~~--~~~A~~aL~~Ls~~~~~~ 129 (2100)
+..|++.+. .+.+++|..+.-++..+-+..+.+-.-.-.+-+..++-=- . .++.+. -..++.+++-+. .
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~-----p 244 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSL-----T 244 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTT-----H
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCC-----H
Confidence 778888775 5677888877777776542222111111112233222000 1 122222 223344444332 2
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
.....+|..+|.+|.+.+.+.+. .+..+...++..|.. ++.+...|..| ..++++.|.+++++ ..++..|+.+|
T Consensus 245 ~~~s~lfl~e~~~~~l~~~~~~~--~~~~~~~a~L~lLsa-ACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL 318 (778)
T 3opb_A 245 TLCSEIFLTKGLSKLFKKRVFEE--QDLQFTKELLRLLSS-ACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVL 318 (778)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHSS--CCHHHHHHHHHHHHH-HCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHhcc--cchHHHHHHHHHHHH-HhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHH
Confidence 34466788999999999888653 333355445554444 44666666655 56778999999975 58899999999
Q ss_pred HHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhh
Q 000133 210 ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQ 288 (2100)
Q Consensus 210 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~ 288 (2100)
..+..........+ ....+.+.+.|.++. .+.+..|+..|.+|+. +++.|..+++..+ ++.|+.++....
T Consensus 319 ~KL~~~~~~~~~si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~----- 389 (778)
T 3opb_A 319 VKTWSFTKLTCINL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQK----- 389 (778)
T ss_dssp HHHTGGGTCTTCCH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTC-----
T ss_pred HHHhcCCCCCcCcH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCC-----
Confidence 88875443221111 236778888888754 4569999999999998 6788888887655 999999997522
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcC
Q 000133 289 GEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFK 368 (2100)
Q Consensus 289 ~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~ 368 (2100)
+..+...++..|.|++...+..... .+ .+.. |.++.+
T Consensus 390 ---d~s~~Ygal~IL~NLt~~~~~~~~e------~~-----------~l~~-----------------------Lk~~A~ 426 (778)
T 3opb_A 390 ---MTHCLYGLLVIMANLSTLPEEXXXX------XX-----------XXXX-----------------------XXXXXX 426 (778)
T ss_dssp ---CTTHHHHHHHHHHHTTCCCCCCCCC------CC--------------------------------------------
T ss_pred ---CchHHHHHHHHHHHhcCCCcccchh------hh-----------hhhh-----------------------hhhhcc
Confidence 2567889999999999753321110 00 0000 111111
Q ss_pred CCCChHHHHHHHHHHHHHhCCCc-cchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 369 PRLPFLVQERTIEALASLYGNPL-LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 369 ~~~~~~vq~~aa~aL~~L~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
.+.++. +.... .+..=.+..+ ++..+.+.|+++.|+.++.+.++.+|+.|+++|.+|+.+ +.++..+++.|++++|
T Consensus 427 ~~~p~~-~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~L 503 (778)
T 3opb_A 427 XXXPAA-DKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKII 503 (778)
T ss_dssp ---------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHH
T ss_pred ccCccc-Ccccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 000000 00000 0000000112 456788999999999999999999999999999999977 7889999999999999
Q ss_pred HHhhCCCCHH---HHHHHHHHHHHhccCCcccHHHHHh---cCChHHHHHhccC--CCH------------HHHHHHHHH
Q 000133 448 ISLLGLSSEQ---QQECSVALLCLLSNENDDSKWAITA---AGGIPPLVQILES--GSA------------KAKEDSASI 507 (2100)
Q Consensus 448 v~lL~s~~~~---v~~~A~~aL~nLs~~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~vre~A~~a 507 (2100)
+.++.+.... .+..|+.+|.+|+. ..+....+.. .|+|++|+++|.. +.. -.+..|+.|
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLli-s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~A 582 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLI-FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLA 582 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHH-TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHh-cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHH
Confidence 9999987654 89999999999984 2222222211 3899999999983 211 236789999
Q ss_pred HHHHhcCC----hhhHHHHHhC-CcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHH
Q 000133 508 LRNLCNHS----EDIRACVESA-DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582 (2100)
Q Consensus 508 L~~L~~~~----~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 582 (2100)
|.||+..+ ++.|..+.++ |+++.|.++|.+++..+++.|+++++||+.+.+. +.
T Consensus 583 LTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~--i~------------------- 641 (778)
T 3opb_A 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT--IA------------------- 641 (778)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG--TG-------------------
T ss_pred HHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH--HH-------------------
Confidence 99999875 3567878885 9999999999999999999999999999874321 00
Q ss_pred HHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CchHHHHHhhcC--C
Q 000133 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMKLLDV--G 659 (2100)
Q Consensus 583 aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~-g~v~~Lv~lL~~--~ 659 (2100)
....... .-...+.++.|+.++.+++.++|++|+++|++++..++..+..+.+. ++++.|+.++.+ +
T Consensus 642 -----~k~~~~~-----~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~ 711 (778)
T 3opb_A 642 -----AKFFNLE-----NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711 (778)
T ss_dssp -----GGTSCCS-----SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred -----HHHHhhc-----CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC
Confidence 0000000 00012248999999999999999999999999987667777888877 799999999988 8
Q ss_pred CHHHHHHHHHHHHHHhc
Q 000133 660 SECILVEASRCLAAIFL 676 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~ 676 (2100)
+++++..++-++.||+.
T Consensus 712 ~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 712 DIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999985
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-20 Score=256.49 Aligned_cols=743 Identities=13% Similarity=0.071 Sum_probs=473.6
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHH---hcCCHHHHHHHHHHHHhhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL---RSGSLAVKIQAATVLGSLC 82 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL---~~~~~~v~~~aa~~L~~L~ 82 (2100)
.....+.++++... +.++..|..|-..|..+.... +....|..++ .+.+..+|..|+..|.+..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYP-----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSH-----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34566666666554 346677888888887664322 2334445555 4567789999999998876
Q ss_pred cc------chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 83 KE------NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 83 ~~------~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
+. ++.+..+ -+.++..|.++++.+|..++.++..+.... . .. .-.+.+|.|++.+.+. +
T Consensus 77 ~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~--~~--~wp~ll~~L~~~l~~~---~ 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFI-----KSECLNNIGDSSPLIRATVGILITTIASKG---E--LQ--NWPDLLPKLCSLLDSE---D 141 (852)
T ss_dssp TTSGGGCCHHHHHHH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---T--TT--TCTTHHHHHHHHHSCS---S
T ss_pred HHccCCCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---C--cc--ccHHHHHHHHHHHcCC---C
Confidence 42 1223322 345666677888999999999999998732 1 11 1245688888888653 4
Q ss_pred chHHHHHHHHHHHhccCChhhHHH-H---HhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHH
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAA-T---VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQL 232 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~-i---~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 232 (2100)
..++..+..+|..++...+..... . .-...++.++++++++++.+|..|+.+|..+....+..... .-...++.+
T Consensus 142 ~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l 220 (852)
T 4fdd_A 142 YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENL 220 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHH
Confidence 457778888898887433221110 0 01235778888889999999999999997766443321111 113567888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcc
Q 000133 233 LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 312 (2100)
Q Consensus 233 v~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~ 312 (2100)
++++.++ +.++|..|+++|..++...++.-....+ +.++.++..+.+.+ ..++..++..+.+++....
T Consensus 221 ~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~---------~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 221 FALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQD---------ENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp HHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSS---------HHHHHHHHHHHHHHTTSTT-
T ss_pred HHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCc---------HHHHHHHHHHHHHHhcchh-
Confidence 8888764 4689999999999999755533211111 35666777765543 6788888888888775310
Q ss_pred hhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhc----------CCC-----------C
Q 000133 313 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQF----------KPR-----------L 371 (2100)
Q Consensus 313 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL----------~~~-----------~ 371 (2100)
....... .+. .+.+.+...+ +.. .
T Consensus 289 -------------~~~~~~~---~~~-------------------~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 289 -------------CKDVLVR---HLP-------------------KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp -------------HHHHHTT---THH-------------------HHHHHHHHHTSCCHHHHHHHHC------------C
T ss_pred -------------HHHHHHH---HHH-------------------HHHHHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 0000000 011 1122222222 011 2
Q ss_pred ChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh
Q 000133 372 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 451 (2100)
...+|..++.+|..++.... ..+. ...++.+..++.++++.+|..|+.+|++++.+....... .-.+.++.++.++
T Consensus 334 ~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l 409 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCL 409 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHc
Confidence 34578889999998853211 1111 135677788888899999999999999999875431111 1135689999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhCCcHHH
Q 000133 452 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED-IRACVESADAVPA 530 (2100)
Q Consensus 452 ~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~-~~~~i~~~g~i~~ 530 (2100)
+++++.++..++++|++++...........-.+.++.|++.+.+.++.+|+.|+++|.+++...+. .... -.+.++.
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~--l~~ll~~ 487 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDT 487 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG--HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH--HHHHHHH
Confidence 999999999999999999853221111111234678899999889999999999999999864221 1111 1356788
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCCC-----C----CcHHHHHH---HhhcCCcchHHHHHHHHHHHHhccCchhHHH
Q 000133 531 LLWLLKNGSANGKEIAAKTLNHLIHKSD-----T----ATISQLTA---LLTSDLPESKVYVLDALKSMLSVVSFSDILR 598 (2100)
Q Consensus 531 Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~----~~i~~L~~---lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 598 (2100)
|+.++++.+.+....+..+++.++.... + ..+|.++. .+.+++++.+ .+.++++.++......- .
T Consensus 488 L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~--~ 564 (852)
T 4fdd_A 488 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGF--L 564 (852)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGG--H
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhH--H
Confidence 8888888777777777777877764221 1 23444442 3446667764 78888888776433211 0
Q ss_pred HhhhccchHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhhcCCC
Q 000133 599 EGSAANDAVETMIKILS-----------------STKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDVGS 660 (2100)
Q Consensus 599 ~~i~~~~~i~~Lv~lL~-----------------s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL~~~~ 660 (2100)
... ...++.++.++. .++.+.+..+.+++..++..-.. ....+...+.++.+...+.+++
T Consensus 565 ~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 642 (852)
T 4fdd_A 565 PYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642 (852)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC
Confidence 000 112333333332 23567888999999998865433 3333335789999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHH
Q 000133 661 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 740 (2100)
Q Consensus 661 ~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll 740 (2100)
..++..+..+++.++...+..-.. .+ ...++.+++.+....++++..|+++++.++..-+......-..+++.|++++
T Consensus 643 ~~vr~~a~~~l~~l~~~~~~~~~~-~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l 720 (852)
T 4fdd_A 643 PEVRQSSFALLGDLTKACFQHVKP-CI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEII 720 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTGG-GH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHH-HH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 999999999999998655432111 11 2367778888888889999999999999973321112223368899999999
Q ss_pred ccCCh--hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCccc
Q 000133 741 CEGTI--SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAW 818 (2100)
Q Consensus 741 ~~~~~--~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~ 818 (2100)
++.+. .++++++.++.++....+.. +.. .....++..++.|...++...++.++..|..+.+..+.
T Consensus 721 ~~~~~~~~~~~~a~~~igrl~~~~~~~--~~~--~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~-------- 788 (852)
T 4fdd_A 721 NRPNTPKTLLENTAITIGRLGYVCPQE--VAP--MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS-------- 788 (852)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHCHHH--HGG--GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG--------
T ss_pred CCCCCCchHHHHHHHHHHHHHHhCHHH--hCc--cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH--------
Confidence 87543 48999999999999875431 111 12345677778787654443347888888888766543
Q ss_pred ceeeccCCCchhhhhhhc---cCChhHHHHHHHHHHHH
Q 000133 819 QVLAEFPKSITPIVSSIA---DATPLLQDKAIEILSRL 853 (2100)
Q Consensus 819 ~~~~~~~~~l~~L~~~l~---~~~~~~~~~a~~~L~~L 853 (2100)
. ....+..+..+++ +.++.+++...++|..+
T Consensus 789 ~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 822 (852)
T 4fdd_A 789 G----VIQDFIFFCDAVASWINPKDDLRDMFCKILHGF 822 (852)
T ss_dssp G----TGGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1 1111222222333 34578888888888777
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=227.14 Aligned_cols=243 Identities=25% Similarity=0.319 Sum_probs=223.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
++++.|+.+++++++++|..|+++|.+++...+.++..+.+.|+++.|+.+++++++.++..++++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56899999999999999999999999999998878899999999999999999999999999999999999866899999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+.+.|+++.|+.++.++++++++.|+++|++|+..+++.+..+.+.|+++.|+++++++++.++..++++|++|+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999977889999999999999999999999999999999999999864321
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
....+.+.++++.|+.++.++++.++..|+++|.+++.++++.
T Consensus 162 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 162 -------------------------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp -------------------------------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred -------------------------------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1123445788999999999999999999999999999987888
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
+..+.+.|+++.|++++.++++.++..|+++|.+++...+
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999987654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-21 Score=225.52 Aligned_cols=241 Identities=24% Similarity=0.285 Sum_probs=219.4
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
|+++.|+.+|++++++++..|+++|.+++...++.+..+.+.|+++.|+++|.++++++++.|+++|++++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999877779999999999999999999999999999999999999987999999
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+.+.|+++.|+.+++++++.++..|+++|++|+...+. .+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 124 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-------------------------------------AIKAI 124 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-------------------------------------HHHHH
Confidence 99999999999999999999999999999999853211 12234
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
...++++.|+++++++++.++..|+++|++++..+++....+...|+++.|+.++.++++.++..++.+|++++.+.+ .
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 203 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-S 203 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-H
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-H
Confidence 456889999999999999999999999999999888888889999999999999999999999999999999987544 4
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~ 720 (2100)
.+..+.+.|+++.|++++.++++++++.|+++|+||...
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 555588999999999999999999999999999999844
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=226.26 Aligned_cols=240 Identities=19% Similarity=0.213 Sum_probs=215.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHH
Q 000133 400 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479 (2100)
Q Consensus 400 g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~ 479 (2100)
...+.++.+|.++++++|..|+++|+++.......++.+.+.|+++.|+.+++++++.++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998866656677888999999999999999999999999999999999878999999
Q ss_pred HHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 480 i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+.+.|+++.|+++|.++++.+++.|+++|+||+...+.....+.+.|+++.|+++++++++.++..|+++|++|+...+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999986444438889999999999999999999999999999999864311
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
....+.+.++++.|+.++.++++.+++.|+++|++++..+++.
T Consensus 172 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 172 -------------------------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp -------------------------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------------------------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 1123345678999999999999999999999999999888888
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
+..+.+.|+++.|+.++.++++.++..|+.+|.+|+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999854
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=260.60 Aligned_cols=1033 Identities=12% Similarity=0.075 Sum_probs=553.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
++.++.-+.++|+++|..|...|.+...........-.....++.|++.+.++++.+|..|+.+|++++...++. .
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~----~ 83 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----Q 83 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH----H
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH----H
Confidence 556777788899999999999998865442110000001145788999999999999999999999998644331 1
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhCCcHHHHHHHhh-cCChhHHHHHHHHHHHHh
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI------RACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLI 554 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~------~~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~aL~~L~ 554 (2100)
-...++.|+..+.++++.+|..|+.+|..++...... ... .....+|.|+..+. +.++.++..|..+|..++
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1235778888888888899999999999998643221 011 11346788888887 466777777777777776
Q ss_pred cCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 555 HKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 555 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
....... . +. . ...++.|...+.++++.+|..|+.+|..++.
T Consensus 163 ~~~~~~l-----------------------------~--~~-~------~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 163 SRQGGLL-----------------------------V--NF-H------PSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHTCSSC-----------------------------T--TT-H------HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHhHhHH-----------------------------H--HH-H------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4221100 0 00 0 1236777788888899999999999999997
Q ss_pred CChhhHHHHHhcCchHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000133 635 TRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 713 (2100)
Q Consensus 635 ~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~a 713 (2100)
..++. . ....++.++..+.+.+ ..++..++.+++.++...+. +....-...++.+++.+.+.++++|+.+..+
T Consensus 205 ~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~ 278 (1230)
T 1u6g_C 205 SCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQA 278 (1230)
T ss_dssp TC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred hcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 64322 1 2346888888885442 35677888899888765432 1111224678888999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHcCcHHHHHHHHccC-------------------------------------ChhHHHHHHHHHH
Q 000133 714 LANLILDSEVSEKAIAEEIILPATRVLCEG-------------------------------------TISGKTLAAAAIA 756 (2100)
Q Consensus 714 L~~L~~~~~~~~~~v~~~~v~~L~~ll~~~-------------------------------------~~~~~~~Aa~aL~ 756 (2100)
+..++..........-+.+++.+++.+.++ ...+|..|+.+|.
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 999873311111112244555555544321 1125888999999
Q ss_pred HHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCC-C--C--------CcccceeeccC
Q 000133 757 RLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASG-H--V--------KPAWQVLAEFP 825 (2100)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~-~--~--------~~~~~~~~~~~ 825 (2100)
.+....+. .+.. .....++.++..+++.+..+. ..++.+|..+.+...... . . .+...+.-..+
T Consensus 359 ~l~~~~~~--~~~~--~~~~l~~~l~~~l~d~~~~Vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 433 (1230)
T 1u6g_C 359 AVVSTRHE--MLPE--FYKTVSPALISRFKEREENVK-ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433 (1230)
T ss_dssp HHHTTCCT--THHH--HHTTTHHHHHSTTSCSSSHHH-HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred HHHHhchh--HHHH--HHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhh
Confidence 88864432 1222 223456666666655555555 788888887765432100 0 0 00011122334
Q ss_pred CCchhhhhhhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecchhhHHHHHhhhchhh
Q 000133 826 KSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQR 905 (2100)
Q Consensus 826 ~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~~~~~ 905 (2100)
..++.+.+.+.+.++.+|..+..+|..+ .+...
T Consensus 434 ~ll~~l~~~l~~~~~~vr~~~~~~L~~l---------------------------------------------~~~~~-- 466 (1230)
T 1u6g_C 434 NIVKALHKQMKEKSVKTRQCCFNMLTEL---------------------------------------------VNVLP-- 466 (1230)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH---------------------------------------------HHHST--
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHH---------------------------------------------HHHch--
Confidence 4445455556666666665555555544 11100
Q ss_pred HHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCchhHHHHHHHHhcc
Q 000133 906 IVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACH 985 (2100)
Q Consensus 906 ~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 985 (2100)
..+ ..+....+..+.+.|..... ......+++..+..+.+. +.......++...++.++.++.+.
T Consensus 467 --~~l--~~~l~~ll~~l~~~L~d~~~-----~~~v~~~a~~~l~~~~~~-----~~~~~~~~~l~~llp~L~~~l~d~- 531 (1230)
T 1u6g_C 467 --GAL--TQHIPVLVPGIIFSLNDKSS-----SSNLKIDALSCLYVILCN-----HSPQVFHPHVQALVPPVVACVGDP- 531 (1230)
T ss_dssp --TTT--GGGHHHHHHHHHHHTTCSSS-----CHHHHHHHHHHHHHHHHS-----SCGGGGHHHHTTTHHHHHHHHTCS-
T ss_pred --hhh--HHHHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHHHh-----CCHHHHHhHHHHHHHHHHHHHccc-
Confidence 000 12334445555555553321 112344555555543321 111101112444455555544321
Q ss_pred Cccchhhhhh-ccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhh--cchhH
Q 000133 986 DEKCKIVIME-AGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLL--KSEES 1062 (2100)
Q Consensus 986 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~~~--~~~~~ 1062 (2100)
+.-+..+ .+++..+.+.+... . ...+.. ..+-....+|.+...+ .|++.
T Consensus 532 ---~~~v~~~al~~l~~l~~~~~~~----~-~~~~~~--------------------~~~~~~~ll~~ll~~l~~~d~~~ 583 (1230)
T 1u6g_C 532 ---FYKITSEALLVTQQLVKVIRPL----D-QPSSFD--------------------ATPYIKDLFTCTIKRLKAADIDQ 583 (1230)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHCCS----S-SCCCCC--------------------CHHHHHHHHHHHHHHHSCSSSCH
T ss_pred ---chHHHHHHHHHHHHHHHHhcCc----c-cccccc--------------------hHHHHHHHHHHHHHHHhccCCCH
Confidence 1111111 12333333332210 0 000000 0011124455555545 34444
Q ss_pred HhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccCcc
Q 000133 1063 ANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGAT 1142 (2100)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~~~~~ 1142 (2100)
..|.-++.++..+....... ....
T Consensus 584 ~vr~~a~~~lg~L~~~~g~~--------------------------------------------------------~~~~ 607 (1230)
T 1u6g_C 584 EVKERAISCMGQIICNLGDN--------------------------------------------------------LGSD 607 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTGGG--------------------------------------------------------CCTH
T ss_pred HHHHHHHHHHHHHHHHhCch--------------------------------------------------------hhhh
Confidence 44444444444333211100 0001
Q ss_pred ccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCHH
Q 000133 1143 SRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAE 1222 (2100)
Q Consensus 1143 ~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~~~~ll~~l~~~~~ 1222 (2100)
....++.|.+.++... .+..+++.+..++......-....-...++.|...+.+.+......++..+-.++...+.
T Consensus 608 ~~~~l~~L~~~l~~e~----~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 608 LPNTLQIFLERLKNEI----TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp HHHHHHHHHHHTTSSS----HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHhccch----hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 1223444444443221 224566667766642110000111134677777777776655566665555544432211
Q ss_pred HHhhhcccCcHHHHHH----HHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhhH-HHHHHHHH
Q 000133 1223 IRRHESAFAAVSQLVA----VLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQ-HAAIAALV 1297 (2100)
Q Consensus 1223 ~~~~~~~~~al~~Li~----~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~-~~A~~aL~ 1297 (2100)
. + ....+.+++. ++.+.+...+..+..+|..+.........-.....++.++.++.+...... ..++..+.
T Consensus 684 ~---~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~ 759 (1230)
T 1u6g_C 684 S---L-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF 759 (1230)
T ss_dssp T---C-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred c---C-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH
Confidence 0 0 1122333321 223445556667777777776432211111245678999988876542221 11222221
Q ss_pred -HhhcCCchhhHHHHhhhcchhHHHHHHHhhc--------CChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHHH
Q 000133 1298 -RLLSENPSRALAVADVEMNAVDVLCRILSSN--------CSMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVSL 1366 (2100)
Q Consensus 1298 -~La~~~~~~~~~~~~v~~gal~~L~~lL~~~--------~~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~l 1366 (2100)
.+...... ....+.++..+... .++.....+.+.++.+... +..+ ..++.++..
T Consensus 760 ~~l~~~~~~---------~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~~~~ 824 (1230)
T 1u6g_C 760 QALVVTGTN---------NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP------AVVGQFIQD 824 (1230)
T ss_dssp HHHHTTCCT---------TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH------HHHTTTTTT
T ss_pred HHHHhcCCC---------CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH------HHHHHHHHH
Confidence 22211110 01234444433211 1234456666777766432 2111 123334444
Q ss_pred Hhc--CCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHH
Q 000133 1367 LVT--EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444 (2100)
Q Consensus 1367 L~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~ 1444 (2100)
+++ .++..+..++..|..+....... ...+.++.++..|.+.++.||.+|..+|+.++..+. . ..++
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~~~~---~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~---~-----~~lp 893 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL---P-----EYLP 893 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTH---H-----HHHH
T ss_pred hCCCCccHHHHHHHHHHHHHhcccCCCc---ccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCH---H-----HHHH
Confidence 544 34555666766766653200000 001246788899999999999999999999985431 1 1477
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCC--CCchhHhHHHHHHHHhhcCCCcccccc
Q 000133 1445 SVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE--FGPDGQHSALQVLVNILEHPQCRADYS 1522 (2100)
Q Consensus 1445 ~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~--~~~~~~~~A~~~L~nL~~~~~~~~~~~ 1522 (2100)
.+++.+..+ ...+......+.+....... .......+.++..|-..- .+..++..+.++|+.|...
T Consensus 894 ~ll~~l~~~-~~~~~~~l~al~e~i~~~~~---~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~-------- 961 (1230)
T 1u6g_C 894 FVLQEITSQ-PKRQYLLLHSLKEIISSASV---VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI-------- 961 (1230)
T ss_dssp HHHHHHHSC-GGGHHHHHHHHHHHHHSSCS---TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS--------
T ss_pred HHHHHHhcc-chhhHHHHHHHHHHHhcCCh---hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhcc--------
Confidence 888888765 34455555566565543211 111112233433332221 2255677789999988533
Q ss_pred cccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhH
Q 000133 1523 LTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE 1602 (2100)
Q Consensus 1523 ~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~ 1602 (2100)
.....++.|...+.+.++.+|..++.++..+.........-.-...+++|+..|++.+.++|+.|+.+|..++...+..
T Consensus 962 -~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 1040 (1230)
T 1u6g_C 962 -DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1040 (1230)
T ss_dssp -SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG
T ss_pred -ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHh
Confidence 2356788899999999999998898888887542111100011134477788889999999999999999999776652
Q ss_pred HHh--ccChHHHHHHhcccCC--------------CchHHHHHHHHHHHHhhhcccch-hhhcccHHHHHHHhhcCCHHH
Q 000133 1603 IAK--EGGVTELSKIILQADP--------------SLPHALWESAASVLSSILQFSSE-FYLEVPVAVLVRLLRSGSEGT 1665 (2100)
Q Consensus 1603 l~~--~G~i~~Ll~lL~~~~~--------------~~~~~l~e~a~~~L~~i~~~~~~-~~~~~~v~~Lv~ll~~~~~~~ 1665 (2100)
+.. ...+|.|++.+...++ +-...+++.|...+..+...... +...+.++.++.-+.. +.++
T Consensus 1041 ~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di 1119 (1230)
T 1u6g_C 1041 IRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDI 1119 (1230)
T ss_dssp TGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc-hHHH
Confidence 211 1245555544422111 00114666677777777654322 1112234455555555 3778
Q ss_pred HHHHHHHHHHhccCChh
Q 000133 1666 VIGSLNALLVLESDDGT 1682 (2100)
Q Consensus 1666 ~~~a~~aL~~L~~~~~~ 1682 (2100)
+.-+...|..|....+.
T Consensus 1120 ~~~~~~~l~~l~~~~~~ 1136 (1230)
T 1u6g_C 1120 KMLTFLMLVRLSTLCPS 1136 (1230)
T ss_dssp HHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHhcCHH
Confidence 88888888877665543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-20 Score=256.60 Aligned_cols=708 Identities=13% Similarity=0.077 Sum_probs=462.6
Q ss_pred hHHHHHHH---hcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHHHhccCCCC
Q 000133 56 VPVLVSLL---RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL---KSSSAEGQIAAAKTIYAVSQGGAKD 129 (2100)
Q Consensus 56 v~~L~~lL---~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL---~s~~~~~~~~A~~aL~~Ls~~~~~~ 129 (2100)
+..|..+| .+++.++|..|-..|..+...+ +..+.|..++ .+.+..+|..|+..|+|.-.. .
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~---~ 79 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYP---------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA---H 79 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT---S
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH---c
Confidence 44445554 4678889999999998774433 2233444444 466788999999999987652 1
Q ss_pred cccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHH
Q 000133 130 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 208 (2100)
Q Consensus 130 ~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~ 208 (2100)
-..-..-.+..+-+.++..|.+ .++.++..+..++..++... +..|. +.++.|++++.++++.++..+..+
T Consensus 80 w~~~~~~~~~~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~l~~~~~~~r~~al~~ 151 (852)
T 4fdd_A 80 FQNFPNGVTDFIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFGA 151 (852)
T ss_dssp GGGCCHHHHHHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccH-----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1000001223334445555543 44568888888888887432 33444 458899999999999999999999
Q ss_pred HHHHhhcCcchhhH-H---hhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCc
Q 000133 209 LACMMEEDVSVCSR-V---LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK 284 (2100)
Q Consensus 209 L~~L~~~~~~~~~~-i---~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 284 (2100)
|..++...+..... . .-...++.|++.+++. +.++|..|+++|.++....+..-... -...++.++.++.+++
T Consensus 152 L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~~d~~- 228 (852)
T 4fdd_A 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALAGDEE- 228 (852)
T ss_dssp HHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHcCCCC-
Confidence 99888543322111 0 0234677777777754 47899999999998876433211000 1134667777765543
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHH
Q 000133 285 EFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLV 364 (2100)
Q Consensus 285 e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv 364 (2100)
..++..++.+|.++....+..+. . .-..+.+.+.
T Consensus 229 --------~~vr~~a~~~L~~l~~~~~~~~~----------------~----------------------~l~~l~~~l~ 262 (852)
T 4fdd_A 229 --------PEVRKNVCRALVMLLEVRMDRLL----------------P----------------------HMHNIVEYML 262 (852)
T ss_dssp --------HHHHHHHHHHHHHHHHHCHHHHG----------------G----------------------GHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhCHHHHH----------------H----------------------HHHHHHHHHH
Confidence 67889999999887752211100 0 0013455566
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhCCCccchhhhc--cccHHHHHHhh-----------cC-----------CCHHHHHHH
Q 000133 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLI-----------TM-----------ATNEVQEEL 420 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL-----------~~-----------~~~~v~~~A 420 (2100)
.++++. ++.++..|++.+..+...+..+..+.. ...++.++..+ .+ .+..++..|
T Consensus 263 ~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a 341 (852)
T 4fdd_A 263 QRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS 341 (852)
T ss_dssp HHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred HHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence 666653 456899999999988765543332211 13355666665 22 223468899
Q ss_pred HHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 421 VRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 421 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
+.+|..++...++. +.. ..++.+..++.++++.+|+.|+++|++++.+..+. ....-.+.++.|+.++.++++.+
T Consensus 342 ~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 342 AAALDVLANVYRDE---LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHhccHH---HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999998764321 111 45788888899999999999999999999654432 11233457899999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCC
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDL 573 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~ 573 (2100)
|..|+|+|++++...+.......-.+.++.|+..+++.++.+++.|+++|.+++....+ ..++.|+..+.+..
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999863211100001134778999999999999999999999999864322 45666777777666
Q ss_pred cchHHHHHHHHHHHHhccC----chhHHHHhhhccchHHHHHH---HhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 574 PESKVYVLDALKSMLSVVS----FSDILREGSAANDAVETMIK---ILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~----~~~~~~~~i~~~~~i~~Lv~---lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
.+....+.++++.++.... .++.+. ..+|.+++ .+.+.+++++ .+..++..++..-.... .....
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~-~~~~~ 568 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGF-LPYCE 568 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGG-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhH-HHHHH
Confidence 6666667788887764322 112121 22566664 3445666664 78888888876422211 11112
Q ss_pred CchHHHHHhhc-----------------CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000133 647 KTLWSVMKLLD-----------------VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQ 709 (2100)
Q Consensus 647 g~v~~Lv~lL~-----------------~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~ 709 (2100)
.+++.++.++. .++.+.+..++.+++.++......-+..+.+.+.++.+...+.++++++|+.
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~ 648 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 648 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHH
Confidence 23444444432 2255688889999999976554333332335788999999999999999999
Q ss_pred HHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc
Q 000133 710 ATCALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA 788 (2100)
Q Consensus 710 aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~ 788 (2100)
+..+++.++.. ++....++ ..+++.+.+.+..+...++.+|+|++..+....+. .+.. .....++.+++.+++.
T Consensus 649 a~~~l~~l~~~~~~~~~~~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~p--~~~~il~~L~~~l~~~ 723 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVLHQLVEIINRP 723 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGGG--GTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHHH--HHHHHHHHHHHHhCCC
Confidence 99999999833 33333333 34888899999777778999999999999875543 2333 2256788889988875
Q ss_pred c-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc-CChhHHHHHHHHHHHHhcCCcc
Q 000133 789 S-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD-ATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 789 ~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
+ .....+++..++..+...... +..| -++..+.++.+.|.. ++..-++.+++.|..+..-+|.
T Consensus 724 ~~~~~~~~~a~~~igrl~~~~~~--~~~~------~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 724 NTPKTLLENTAITIGRLGYVCPQ--EVAP------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHH--HHGG------GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred CCCchHHHHHHHHHHHHHHhCHH--HhCc------cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4 333448899999999766432 1111 245677888888876 4566799999999888555554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=222.33 Aligned_cols=239 Identities=22% Similarity=0.244 Sum_probs=216.0
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
...+.++..|.+++++++..|+++|+++....++.+..+.+.|+++.|+++|.+++++++..|+++|.+++..+++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45899999999999999999999998876556778889999999999999999999999999999999999888999999
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 601 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i 601 (2100)
+.+.|+++.|+++|+++++.+++.|+++|++++...+. ....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch-------------------------------------HHHHH
Confidence 99999999999999999999999999999999763321 11234
Q ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 000133 602 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 681 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~ 681 (2100)
...++++.|+++|.++++.+++.|+++|++++.++++....+...|++|.|+.++.++++.++..++.+|++++.+.+ .
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 213 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-E 213 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-H
Confidence 567889999999999999999999999999999888888889999999999999999999999999999999986654 4
Q ss_pred HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 682 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 682 ~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
++..+.+.|+++.|++++.++++++|+.|+++|+||+
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 5555889999999999999999999999999999986
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=234.56 Aligned_cols=567 Identities=12% Similarity=0.094 Sum_probs=402.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChh
Q 000133 97 IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEG 176 (2100)
Q Consensus 97 i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~ 176 (2100)
+..|+..|++++.+.|..|+.+|..+... . +.. -....++|.|...+ ..++.++..+..+|..++.....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~----~-~~~-~~~~~l~~~L~~~~----d~~~~vr~~~~~~L~~~~~~~~~ 81 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALA----L-GVE-RTRSELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHH----S-CHH-HHHHTHHHHHHHTC----CCCHHHHHHHHHHHTTCSGGGTS
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHH----h-CHH-HHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHhccCc
Confidence 67888999999999999999999887751 0 110 11123455554433 34456888888889887642111
Q ss_pred hHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 177 FWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 177 ~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
. -.....++.|..++.++++.+|..|+.+|.+++...+. .......++.+.++..+ ++...|..|+.+|..++
T Consensus 82 ~---~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 82 P---EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCY 154 (588)
T ss_dssp G---GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHT
T ss_pred H---HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH
Confidence 1 11234577888888889999999999999999865542 12223346666666655 45689999999999987
Q ss_pred cCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhh
Q 000133 257 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 336 (2100)
Q Consensus 257 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~ga 336 (2100)
...++. . ....++.+..++.+++ ..++..++.+|.+++..... ...
T Consensus 155 ~~~~~~---~-~~~l~~~l~~l~~d~~---------~~VR~~a~~~l~~l~~~~~~---------------~~~------ 200 (588)
T 1b3u_A 155 PRVSSA---V-KAELRQYFRNLCSDDT---------PMVRRAAASKLGEFAKVLEL---------------DNV------ 200 (588)
T ss_dssp TTSCHH---H-HHHHHHHHHHHHTCSC---------HHHHHHHHHHHHHHHHTSCH---------------HHH------
T ss_pred HhcCHH---H-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHhcH---------------HhH------
Confidence 643321 1 1223566667765543 67889999999877642110 000
Q ss_pred hHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC-CccchhhhccccHHHHHHhhcCCCHH
Q 000133 337 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMATNE 415 (2100)
Q Consensus 337 l~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~ 415 (2100)
...+.+.+..++.... ..+|..|+.++..++.. +. .......++.+..+++++++.
T Consensus 201 -------------------~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~ 257 (588)
T 1b3u_A 201 -------------------KSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWR 257 (588)
T ss_dssp -------------------HHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHH
T ss_pred -------------------HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHH
Confidence 0135566666666543 56899999999988432 21 111223577788888889999
Q ss_pred HHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc-HHHHHhcCChHHHHHhcc
Q 000133 416 VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS-KWAITAAGGIPPLVQILE 494 (2100)
Q Consensus 416 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~-~~~i~~~g~i~~Lv~lL~ 494 (2100)
+|..++.+|..++..... .......++.++.+++++++.++..|+.+|..++...... +........+|.+..++.
T Consensus 258 vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 334 (588)
T 1b3u_A 258 VRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence 999999999999864222 1122356899999999999999999999999997643322 211233456788999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-----CCcHHHHHHHh
Q 000133 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-----TATISQLTALL 569 (2100)
Q Consensus 495 ~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~~~i~~L~~lL 569 (2100)
+.++.+|..++++|..++..... .. .....+|.+..++++.++.++..+..+|..++.... +..+|.+..++
T Consensus 335 d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~ 411 (588)
T 1b3u_A 335 DANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99999999999999998753111 11 123478999999999999999999999988876432 24677888888
Q ss_pred hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCch
Q 000133 570 TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTL 649 (2100)
Q Consensus 570 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v 649 (2100)
.+.++.+|..+..+++.++...+... .....+|.+..++.+++..+|+.|+.++..++..... .......+
T Consensus 412 ~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~ll 482 (588)
T 1b3u_A 412 EDAKWRVRLAIIEYMPLLAGQLGVEF------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATII 482 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCGGG------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTH
T ss_pred cCCCchHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHH
Confidence 88899999999999998876433211 1223478899999999999999999999999864221 12234678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHH
Q 000133 650 WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAI 728 (2100)
Q Consensus 650 ~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v 728 (2100)
|.|..++.+.+..++..++.+++.++..... . ......++.|.+++.++++++|..++++|+.+... .+ .+.
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~ 555 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---D-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STL 555 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---H-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---H-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch---hhh
Confidence 9999999999999999999999999654221 1 23356899999999999999999999999999842 22 123
Q ss_pred HcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 729 AEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 729 ~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
.+.+++.|.+++.+.+..+|..|..+|..+.
T Consensus 556 ~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 3577888888888888889999999997653
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-18 Score=229.68 Aligned_cols=575 Identities=13% Similarity=0.068 Sum_probs=393.3
Q ss_pred chhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc
Q 000133 5 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE 84 (2100)
Q Consensus 5 ~~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~ 84 (2100)
+.+...+..+++.++. .++..|..|...|..++..-...+. ....+|.|...+ ++++++|..++..|+.++..
T Consensus 6 ~~~~~~i~~l~~~l~s--~~~~~R~~A~~~l~~i~~~~~~~~~----~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~ 78 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRN--EDVQLRLNSIKKLSTIALALGVERT----RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTL 78 (588)
T ss_dssp TTSSHHHHHHHHHTTC--SCHHHHHHHHHTHHHHHHHSCHHHH----HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGG
T ss_pred CCCcCcHHHHHHHhhc--ccHHHHHHHHHhHHHHHHHhCHHHH----HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhc
Confidence 3445668888887764 4567888898888877653211110 113456665555 67889999999999988743
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHH
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 164 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~ 164 (2100)
-... -.....+|.|..++.+++..+|..|..+|.++..... + .....-.+|.+..+..+ .+..++..+.
T Consensus 79 ~~~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~-~-----~~~~~~l~~~l~~l~~~---~~~~~R~~a~ 147 (588)
T 1b3u_A 79 VGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-P-----SDLEAHFVPLVKRLAGG---DWFTSRTSAC 147 (588)
T ss_dssp GTSG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC-H-----HHHHHTHHHHHHHHHTC---SSHHHHHHHG
T ss_pred cCcH--HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC-H-----HHHHHHHHHHHHHHhcC---CCcHHHHHHH
Confidence 1110 0112346777777788899999999999999987211 1 11222345555554433 2345677777
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHH
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASV 244 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 244 (2100)
.++..++...+.. + ....++.+..++.++++.+|..++.+|..++...+. .......+|.|..++.+++ ..+
T Consensus 148 ~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~-~~v 219 (588)
T 1b3u_A 148 GLFSVCYPRVSSA---V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQ-DSV 219 (588)
T ss_dssp GGHHHHTTTSCHH---H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSC-HHH
T ss_pred HHHHHHHHhcCHH---H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCc-HHH
Confidence 7777776443322 1 123577888888999999999999999988865442 2233566888888887654 689
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 245 RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 245 ~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
|..|+.+|..++...+.. ......+|.+..++.+++ ..+
T Consensus 220 r~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~---------~~v----------------------------- 258 (588)
T 1b3u_A 220 RLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKS---------WRV----------------------------- 258 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSS---------HHH-----------------------------
T ss_pred HHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCC---------HHH-----------------------------
Confidence 999999998887532211 111123444444443221 233
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHH
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 404 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~ 404 (2100)
|..++.++..+..... ........++.
T Consensus 259 ---------------------------------------------------R~~a~~~l~~l~~~~~--~~~~~~~l~~~ 285 (588)
T 1b3u_A 259 ---------------------------------------------------RYMVADKFTELQKAVG--PEITKTDLVPA 285 (588)
T ss_dssp ---------------------------------------------------HHHHHHTHHHHHHHHC--HHHHHHTHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHhC--cccchhHHHHH
Confidence 4444444444421100 00011234677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccc-hHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
++.+++++++.+|..|+.+|..++...+.. .........+|.+..+++++++.+|..++++|..++..... . ....
T Consensus 286 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~ 362 (588)
T 1b3u_A 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIE 362 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHH
Confidence 888888899999999999999998764332 11111235678899999999999999999999999742111 1 1123
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-----C
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-----D 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-----~ 558 (2100)
..+|.+..++++.++++|..++.+|..++....... .....+|.|..++++.+++++..++.+|..++..- .
T Consensus 363 ~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 439 (588)
T 1b3u_A 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439 (588)
T ss_dssp HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHH
Confidence 478899999999999999999999998875322111 12346789999999999999999999999987532 2
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
+..+|.+..++.++++.+|..+..+++.+....+... .. ...+|.|..++.+.+..+|..+++++..++..-.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~-----~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~- 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW-AH-----ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG- 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH-HH-----HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh-HH-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-
Confidence 3467788888999999999999999999887654332 11 2348888888889999999999999999986421
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
........+|.|.+++.++++.++..++.+++.++...... +.....+|.|.+++.++++++|..|+.||..+.
T Consensus 513 --~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 513 --QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 22334568999999999999999999999999997654321 223456788888889999999999999998763
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-17 Score=227.08 Aligned_cols=755 Identities=11% Similarity=0.045 Sum_probs=456.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCccc---
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS--SAEGQIAAAKTIYAVSQGGAKDYVG--- 132 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~~--- 132 (2100)
.++..+.+++.++|..|...|..+..++ ..+.++.|+..+.++ +..+|..|+..|++.... ....
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~---~~~~~~~ 74 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTS---KDPDIKA 74 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC---SSHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc---cchHhHH
Confidence 3455566788899999999998875421 124577788888764 578899999999986531 1000
Q ss_pred --ccch------hccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC--hhhHHHHHhcCCHHHHHHhHccC--CHH
Q 000133 133 --SKIF------STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAATVQAGGIDILVKLLTLG--QSS 200 (2100)
Q Consensus 133 --~~~~------~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~--~~~~~~i~~~g~v~~Lv~lL~s~--~~~ 200 (2100)
...+ ....+-+.+++.|.+.. +.+ ..+..++..++... ...|. ..++.++..+.++ ++.
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~---~~~-~~~~~~l~~i~~~~~~~~~w~-----~ll~~l~~~l~~~~~~~~ 145 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET---YRP-SSASQCVAGIACAEIPVNQWP-----ELIPQLVANVTNPNSTEH 145 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC---SSS-CHHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHHCTTCCHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc---HHH-HHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhCCCCCHH
Confidence 0001 11122333666665432 224 45666666665321 13343 4578999999998 899
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhH-HHHHhCCChHHHHHh
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAMINA 278 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~Lv~l 278 (2100)
++..+..+|..++.......-.-.-...++.+.+.+..+. +.++|..|..+|.++...-...- ........++.+...
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 225 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999888542111111122456778888888763 46899999999999875322110 000001134555555
Q ss_pred hcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchh
Q 000133 279 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 358 (2100)
Q Consensus 279 l~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~ 358 (2100)
+... +..++..++.+|..+.......+ ...+. ..
T Consensus 226 ~~~~---------~~~vr~~a~~~l~~l~~~~~~~~------------~~~~~-------------------------~~ 259 (876)
T 1qgr_A 226 TQCP---------DTRVRVAALQNLVKIMSLYYQYM------------ETYMG-------------------------PA 259 (876)
T ss_dssp TTCS---------SHHHHHHHHHHHHHHHHHSGGGC------------HHHHT-------------------------TT
T ss_pred cCCC---------CHHHHHHHHHHHHHHHHHhHHHH------------HHHHH-------------------------HH
Confidence 5433 25677888888887664211000 00000 02
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhCCC-----------------c--cchhhh--ccccHHHHHHhhc-------
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLYGNP-----------------L--LSIKLE--NSEAKRLLVGLIT------- 410 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~-----------------~--~~~~l~--~~g~i~~Lv~lL~------- 410 (2100)
+.+.+...+.. .++.++..+.+.+..+.... . ...... -...++.++..+.
T Consensus 260 l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~ 338 (876)
T 1qgr_A 260 LFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD 338 (876)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccc
Confidence 33444444433 33456777777777663221 0 000100 0234556667664
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPL 489 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~L 489 (2100)
+.++.+|..|..+|..++...++ .+.. ..++.+...+.++++.+|+.|+.+|+.++.+.. +.... .-...+|.|
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l 413 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTL 413 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHH
Confidence 23567899999999998876432 1111 456777788889999999999999999986443 22222 234478999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--------
Q 000133 490 VQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------- 558 (2100)
Q Consensus 490 v~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------- 558 (2100)
+..+.++++.+|..|+++|.+++...+.. ...+ ...++.|+..+++. ++++..++++|.+++....
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999999999999999753321 1111 24678888888875 8899999999999885411
Q ss_pred -------------CCcHHHHHHHhhcC---CcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC------
Q 000133 559 -------------TATISQLTALLTSD---LPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS------ 616 (2100)
Q Consensus 559 -------------~~~i~~L~~lL~~~---~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s------ 616 (2100)
+..++.|...+.+. ...+|..+.++++.+....+... ...+ ...++.++..+..
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~--~~l~~~l~~~l~~~~~~~~ 566 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC--YPAV--QKTTLVIMERLQQVLQMES 566 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT--HHHH--HHHHHHHHHHHHHHHTTTT
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhh--HHHH--HHHHHHHHHHHHHHHHHHh
Confidence 13456666666654 35688889999998887654321 1111 1235666655432
Q ss_pred ----C-C----HHHHHHHHHHHHHHhcCCh-hhHHHHHhcCchHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchhHHH
Q 000133 617 ----T-K----EETQAKSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGS--ECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 617 ----~-~----~~~~~~Aa~aL~~L~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
. + ++++..++.++..++..-. +.. ......++|.++.++.+.+ ..++..++.+++.++.........
T Consensus 567 ~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 567 HIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp SCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH-HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh-hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 2 2 4577889999999987643 211 1223457888888887764 367889999999987643221100
Q ss_pred HHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc--CChhHHHHHHHHHHHHHhc
Q 000133 685 AAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE--GTISGKTLAAAAIARLLHS 761 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~ll~~~-~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~--~~~~~~~~Aa~aL~~l~~~ 761 (2100)
.. ...++.|...+.+. ++++|..+.++++.|+.............+++.+.+.+.+ .+.+++..+.+++.++...
T Consensus 646 -~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 646 -YM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp -GH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 11 23677788888876 8999999999999998332112222346888999999987 3456999999999999874
Q ss_pred CccchhHhhhhhccCcHHHHHHhhhhcc----c------ccchHhHHHHHHHHHHcCCCC-CCCCc-ccceeeccCCCch
Q 000133 762 RKIDYTITDCVNRAGTVLALVSFLESAS----G------SVATSEALDALAILSRSGGAS-GHVKP-AWQVLAEFPKSIT 829 (2100)
Q Consensus 762 ~~~~~~~~~~~~~~g~l~~li~~l~s~~----~------~v~~~~al~~L~~L~~~~~~~-~~~~~-~~~~~~~~~~~l~ 829 (2100)
.+.. +..+ ....++.+.+.++... + ...++.++.++..+++..... ....+ .....-..+..+.
T Consensus 724 ~g~~--~~~~--l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 799 (876)
T 1qgr_A 724 IGGE--FKKY--LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILS 799 (876)
T ss_dssp HGGG--GGGG--HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHH
T ss_pred hchh--HHHH--HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHH
Confidence 4332 2221 1334555555554321 0 022255667776665432210 00000 0011111223333
Q ss_pred hhhhhhccC--ChhHHHHHHHHHHHHhcCCcccchh-cccc--cccchHHHHHHHhhcCCcceecchhhHHHHHhhh
Q 000133 830 PIVSSIADA--TPLLQDKAIEILSRLCRDQPAVLGD-EVTG--ASGCISSIARRVISCTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 830 ~L~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~g~-~~~~--~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~~~~ 901 (2100)
.+.+...+. ++.+|..|..+|..|+... |. .+.. ...+...++...+.|+++++|..|+|++..++|.
T Consensus 800 ~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 800 FIDHIAGDEDHTDGVVACAAGLIGDLCTAF----GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHHHTCSCCCHHHHHHHHHHHHHHHHHH----CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence 333333555 6799999999998884321 11 1110 1223334555477799999999999999999987
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=197.62 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=181.5
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.++.+.|+.+++++++.++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|+|++.++++.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 46788999999999999999999999999988888889999999999999999999999999999999999977888999
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
.+.+.|+++.|+++|.++++.+++.|+++|+||+.++++.+..+.+.|+++.|+++++++++.++..|+++|++++..++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999987432
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
. .+..+...|+++.|++++.++++++++.|+++|.+|+.
T Consensus 171 ~-------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 E-------------------------------------QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp H-------------------------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred H-------------------------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1 12244567889999999999999999999999999985
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=195.45 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=181.5
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
.++.+.|+.+++++++.++..|+++|++++.++++.+..+.+.|+++.|+++|.++++++++.|+++|+|++..+++.+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 47789999999999999999999999999987889999999999999999999999999999999999999987889999
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
.+.+.|++|.|+++|+++++.++..|+++|++++.+.+. ....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~ 133 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQA 133 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-------------------------------------HHHH
Confidence 999999999999999999999999999999999863321 1123
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 676 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~ 676 (2100)
+.+.++++.|+++++++++.+++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.+++.|+.+|.+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4457889999999999999999999999999999888899999999999999999999999999999999999954
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-15 Score=213.19 Aligned_cols=768 Identities=13% Similarity=0.031 Sum_probs=466.7
Q ss_pred HHHHHHHHHH-HccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHhhhccc
Q 000133 9 ASVAQCIEQL-RQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 9 ~~v~~~~~~l-~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~ 85 (2100)
..+.++++.+ .. .++..|..|...|..+.+... .+....|+.++.+. +..+|..|+.+|.+..+..
T Consensus 4 ~~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 4 AEFAQLLENSILS--PDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhCH---------HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc
Confidence 3567777765 53 466778888888888665311 24567788888764 6789999999999875321
Q ss_pred h-h-------hHH--H---HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc
Q 000133 86 E-L-------RVK--V---LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 152 (2100)
Q Consensus 86 ~-~-------~~~--i---~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~ 152 (2100)
. . +.. + .....-+.|+..|.++++.+|..++.+|..+.....+. . .-...+|.|++.+.+.
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~----~--~w~~ll~~L~~~l~~~ 146 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH----G--AWPELMKIMVDNTGAE 146 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG----T--CCHHHHHHHHHHTSTT
T ss_pred ChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc----c--ccHHHHHHHHHHHhcC
Confidence 0 0 000 0 01122356788888899999999999999988721110 0 0123466666666542
Q ss_pred CCCcchHHHHHHHHHHHhccCChhhHH--HHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHhhcCcchhh-HHhhhc
Q 000133 153 LKSGNVVDNLLTGALRNLSTSTEGFWA--ATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAAD 227 (2100)
Q Consensus 153 ~~~~~~v~~~a~~aL~nL~~~~~~~~~--~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g 227 (2100)
.++.++..++.+|..++.......+ .-.....++.+...+.++ ++.+|..++.+|..+......... ......
T Consensus 147 --~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 147 --QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp --SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 1455777788888888753211100 001112466777788877 889999999999877533221110 001123
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 228 ATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 228 ~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
.++.|.+.+.+ .+.++|..++.+|..+....++. ...+. ...++.++..+.+. +..++..++..+..+
T Consensus 225 ll~~l~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~---------~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 225 LMQVVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP---------NDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS---------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC---------cHHHHHHHHHHHHHH
Confidence 46666666655 44789999999999988643321 11111 13344455555443 256777888877766
Q ss_pred hCCCcchhhhccccccCCCC-hhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC------CChHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSS-PAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR------LPFLVQERT 379 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~-~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~------~~~~vq~~a 379 (2100)
+.........-.+....|.. ...... .+ ..+.+.++..+... ....++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 294 CEEEIDIAYELAQFPQSPLQSYNFALS---SI-------------------KDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHH---HH-------------------HHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHHHhhhhhhhhccCCchhhHHHHHH---HH-------------------HHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 54110000000000000000 000000 00 13344444444431 223578889
Q ss_pred HHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHH
Q 000133 380 IEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQ 458 (2100)
Q Consensus 380 a~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v 458 (2100)
..+|..++..-. ...+ ...++.+...+.+.++.+|+.|+.+++.++.... .......+ ..++.|+..++++++.+
T Consensus 352 ~~~L~~l~~~~~-~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~v 427 (861)
T 2bpt_A 352 GACLQLFAQNCG-NHIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHG-GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHcc-HhHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHH
Confidence 999988843211 1111 1345666777788899999999999999997642 21111121 46788999999999999
Q ss_pred HHHHHHHHHHhccCCcccH-HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC-----hhhHHHHHhCCcHHHHH
Q 000133 459 QECSVALLCLLSNENDDSK-WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-----EDIRACVESADAVPALL 532 (2100)
Q Consensus 459 ~~~A~~aL~nLs~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv 532 (2100)
+..++++|+.++....... ..-.-...++.|++.+.+. +.+|..|+++|.+++... +.....+ ...++.|+
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~ 504 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHH
Confidence 9999999999875321100 0001123578888888776 999999999999998631 1111111 23567888
Q ss_pred HHhhcCC--hhHHHHHHHHHHHHhcCCCCC-------cHHHHHHHhhcC---------------CcchHHHHHHHHHHHH
Q 000133 533 WLLKNGS--ANGKEIAAKTLNHLIHKSDTA-------TISQLTALLTSD---------------LPESKVYVLDALKSML 588 (2100)
Q Consensus 533 ~lL~~~~--~~~~~~Aa~aL~~L~~~~~~~-------~i~~L~~lL~~~---------------~~~~~~~a~~aL~~l~ 588 (2100)
.++++.+ +.++..+..++..++...... .+|.++..+.+. ..+++..+..+|+.+.
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 8888543 789999999999998765432 334455555421 3346677888888877
Q ss_pred hccCchhHHHHhhhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHH
Q 000133 589 SVVSFSDILREGSAANDAVETMIKILSSTKE-ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEA 667 (2100)
Q Consensus 589 ~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~-~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a 667 (2100)
...+.. +... -...++.+...+.+.+. .+++.+..++..++....+... ......+|.|...+.+++..++..+
T Consensus 585 ~~~~~~--~~~~--~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 585 RKSPSS--VEPV--ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHCGGG--TGGG--HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHhhhh--hHHH--HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccccHHHHHHH
Confidence 644321 1111 12347788888888776 8999999999998865332211 2233488999999988888899999
Q ss_pred HHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCC--HHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHHHHHHHccCC
Q 000133 668 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV--LEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLCEGT 744 (2100)
Q Consensus 668 a~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~--~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~~~ 744 (2100)
+.+++.++....+.-. ..-...++.+++.+.+++ +++|..+..+++.++.. ++.... .-+.+++.+.+.+....
T Consensus 660 ~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 660 VGFIADISNSLEEDFR--RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP-YLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHTGGGGH--HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhchhcc--chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCC
Confidence 9999999765543211 122346777777777764 88999999999999843 222222 23678888888887532
Q ss_pred -----------hhHHHHHHHHHHHHHhcCccc-hhHhhhhhccCcHHHHHHhhhhc----ccccchHhHHHHHHHHHHcC
Q 000133 745 -----------ISGKTLAAAAIARLLHSRKID-YTITDCVNRAGTVLALVSFLESA----SGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 745 -----------~~~~~~Aa~aL~~l~~~~~~~-~~~~~~~~~~g~l~~li~~l~s~----~~~v~~~~al~~L~~L~~~~ 808 (2100)
..+|..+..++..+....+.. ..+..+ ....+..+...+.+. +..+. ..|+.+|..+++.-
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~--~~~i~~~l~~~~~d~~~~~~~~vr-~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY--VGTIFQFIAQVAEDPQLYSEDATS-RAAVGLIGDIAAMF 813 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG--HHHHHHHHHHHHHCHHHHTSHHHH-HHHHHHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH--HHHHHHHHHHHHcCcccCCcHHHH-HHHHHHHHHHHHHc
Confidence 236888888888888654421 122221 112233333444432 34444 88999999998765
Q ss_pred CCCCCCCcccceeeccC-CCchhhhhhhcc---CChhHHHHHHHHHHHH
Q 000133 809 GASGHVKPAWQVLAEFP-KSITPIVSSIAD---ATPLLQDKAIEILSRL 853 (2100)
Q Consensus 809 ~~~~~~~~~~~~~~~~~-~~l~~L~~~l~~---~~~~~~~~a~~~L~~L 853 (2100)
.+..+. .-.+ ..+..|++++.. .+..+++.|..+++.+
T Consensus 814 ~g~~~~-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 814 PDGSIK-------QFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp TTSTTG-------GGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchHH-------HHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 221111 1234 467888888873 5678999999988777
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-16 Score=216.67 Aligned_cols=750 Identities=14% Similarity=0.082 Sum_probs=468.2
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCcccc-
Q 000133 58 VLVSLL-RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS--SAEGQIAAAKTIYAVSQGGAKDYVGS- 133 (2100)
Q Consensus 58 ~L~~lL-~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~~~- 133 (2100)
.++..+ .+++..+|..|...|..+.+++ ..+.++.|+..+.++ +..+|..|+..|++..... .....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~--w~~~~~ 78 (861)
T 2bpt_A 8 QLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK--DSVKTQ 78 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS--SHHHHH
T ss_pred HHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc--ChHHHH
Confidence 444455 6788899999999999875431 124577888888654 6788999999999875411 00000
Q ss_pred ------c----chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-h-hhHHHHHhcCCHHHHHHhHccC-CHH
Q 000133 134 ------K----IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-E-GFWAATVQAGGIDILVKLLTLG-QSS 200 (2100)
Q Consensus 134 ------~----~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~-~~~~~i~~~g~v~~Lv~lL~s~-~~~ 200 (2100)
. .-....+-+.|++.|.. .++.++..+..++..++... + ..|.. .++.|++.+.++ ++.
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCHH
Confidence 0 00122334456666654 33557777888888776432 1 24543 468899999988 999
Q ss_pred HHHHHHHHHHHHhhcCcchh--hHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhH-HHHHhCCChHHHH
Q 000133 201 TQAHVCFLLACMMEEDVSVC--SRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAMI 276 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~--~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~Lv 276 (2100)
++..+..+|..++....... -.-.....++.+...+.+.. +.++|..|+.+|.++...-...- ........++.+.
T Consensus 151 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~ 230 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC 230 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHH
Confidence 99999999988885432110 01112345677778887752 57899999999998753211110 0000011244455
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
..+.++ +..++..++.+|..+....+.. . .. ++.
T Consensus 231 ~~~~~~---------~~~~r~~a~~~l~~l~~~~~~~------------~----~~------~l~--------------- 264 (861)
T 2bpt_A 231 EATQAE---------DIEVQAAAFGCLCKIMSKYYTF------------M----KP------YME--------------- 264 (861)
T ss_dssp HHHTCS---------CHHHHHHHHHHHHHHHHHHGGG------------C----HH------HHH---------------
T ss_pred HHhcCC---------CHHHHHHHHHHHHHHHHHHHHH------------H----HH------HHH---------------
Confidence 555433 2567788888887665421100 0 00 000
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCc------------------c-chhhhccccHHHHHHhhcC------
Q 000133 357 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL------------------L-SIKLENSEAKRLLVGLITM------ 411 (2100)
Q Consensus 357 ~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~------------------~-~~~l~~~g~i~~Lv~lL~~------ 411 (2100)
..+.+.+...+.. .++.++..+.+.+..+..... . +..+ ...++.++..+..
T Consensus 265 ~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~~ll~~l~~~~~d~~ 341 (861)
T 2bpt_A 265 QALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI--KDVVPNLLNLLTRQNEDPE 341 (861)
T ss_dssp HTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH--HHHHHHHHHHTTCCCCC-C
T ss_pred HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH--HHHHHHHHHHHHhcccccc
Confidence 0233344444443 345678888888887743210 0 1111 2356677777763
Q ss_pred -CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHH
Q 000133 412 -ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPL 489 (2100)
Q Consensus 412 -~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~L 489 (2100)
.++.++..+..+|..++...+.. +. ...++.+...+.+.+..+++.|+.+|+.++.+.. +...... ...++.|
T Consensus 342 d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l 416 (861)
T 2bpt_A 342 DDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSI 416 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHH
Confidence 23578999999999988753321 11 1345777778888999999999999999996432 2221222 2478889
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--------
Q 000133 490 VQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------- 558 (2100)
Q Consensus 490 v~lL~~~~~~vre~A~~aL~~L~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-------- 558 (2100)
+..+.++++.+|..++|+|+.++...... ... -...++.|+..+++. ++++..++++|.+++....
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence 99999999999999999999998632110 001 123678888888876 8999999999999876421
Q ss_pred ---CCcHHHHHHHhhcCC--cchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcC---------------CC
Q 000133 559 ---TATISQLTALLTSDL--PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS---------------TK 618 (2100)
Q Consensus 559 ---~~~i~~L~~lL~~~~--~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s---------------~~ 618 (2100)
+..++.|+.++.+.+ +.+|..+.++++.+....+..- ...+ ...+|.+++.+.. ..
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~ 569 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV--AETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSL 569 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh--HHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHH
Confidence 133556667776433 6789999999999887655321 1111 1236667766542 14
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH
Q 000133 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSE-CILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 697 (2100)
Q Consensus 619 ~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ 697 (2100)
..++..++.+|.+++........ ......++.+...+.+.+. .++..+..+++.++......... .-...++.|..
T Consensus 570 ~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~ 646 (861)
T 2bpt_A 570 QELQSNILTVLAAVIRKSPSSVE-PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK--YLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHH
Confidence 56788899999999875443111 1122467778888877765 78888999999887543322111 12347888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC--hhHHHHHHHHHHHHHhcCccchhHhhhhhcc
Q 000133 698 LAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT--ISGKTLAAAAIARLLHSRKIDYTITDCVNRA 775 (2100)
Q Consensus 698 ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~--~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~ 775 (2100)
.+.++++++|..+..++..++.............+++.+.+.+.+.+ ..++..+..++..+....+.. +..+ ..
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~--l~ 722 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD--FIPY--LN 722 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG--GHHH--HH
T ss_pred HhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh--HHHH--HH
Confidence 88888889999999999998733221222334678888999998765 669999999999998755432 3331 13
Q ss_pred CcHHHHHHhhhhcc----c------ccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccC----Chh
Q 000133 776 GTVLALVSFLESAS----G------SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA----TPL 841 (2100)
Q Consensus 776 g~l~~li~~l~s~~----~------~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~----~~~ 841 (2100)
..++.+++.+.... + ...+..+++++..++..-... +....-..+..+..|.+++.+. +..
T Consensus 723 ~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-----~~~~~~~~~~i~~~l~~~~~d~~~~~~~~ 797 (861)
T 2bpt_A 723 DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDA 797 (861)
T ss_dssp HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----HHHHGGGHHHHHHHHHHHHHCHHHHTSHH
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 45666777665321 0 112377788888777543320 1122223355666676777663 789
Q ss_pred HHHHHHHHHHHHhcCCcccchhcccc--cccchHHHHHHHh--hcCCcceecchhhHHHHHhh
Q 000133 842 LQDKAIEILSRLCRDQPAVLGDEVTG--ASGCISSIARRVI--SCTNPKVKIGGAALLICAAK 900 (2100)
Q Consensus 842 ~~~~a~~~L~~L~~~~~~~~g~~~~~--~~~~~~~~~~~~l--~s~~~~~r~~~~~~~~~~~~ 900 (2100)
+|..|..++..|+..-+ |.-+.. .+.+...++...- ++.+..++-.|+|++..++|
T Consensus 798 vr~~a~~~l~~l~~~~~---g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 798 TSRAAVGLIGDIAAMFP---DGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHHHHCT---TSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99999999998854210 221111 1123334444443 36677889999999888775
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=195.46 Aligned_cols=205 Identities=19% Similarity=0.184 Sum_probs=172.6
Q ss_pred CChHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Q 000133 95 GCIPPLLGLLKSSSA--EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 172 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~--~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~ 172 (2100)
-.+|+|+.+|.++++ +++..|+.+|.+++.+ +...+..+++.|+||+|+++|.+. ++.++..++++|+||+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~---~~~~r~~I~~~G~Ip~LV~lL~s~---~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKVQ---NEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC---CcHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHh
Confidence 358999999999998 8888899999999973 444577788999999999999873 45699999999999998
Q ss_pred CChhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhc-----C--------
Q 000133 173 STEGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG-----S-------- 238 (2100)
Q Consensus 173 ~~~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-----~-------- 238 (2100)
.++.++..|+++|+||+|+++|+ +++.+++++|+.+|++|+..+. ++..+++ +++++|++++. .
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccc
Confidence 88889999999999999999998 5799999999999999987544 6777775 57999998663 1
Q ss_pred --CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC-hHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCC
Q 000133 239 --GNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310 (2100)
Q Consensus 239 --~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~ 310 (2100)
..+.+++.+|+++|+||+..++++|+.+.+++| |+.|+.++.... ..++.+.+.+|+++++|+||+...
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~---~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI---ADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH---HTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh---hcccchhHHHHHHHHHHHHHHhhh
Confidence 135689999999999999988899999998855 799999996421 123446788999999999999753
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=192.01 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=173.7
Q ss_pred hHHHHHhhcCCCCCh-HHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchH
Q 000133 359 VEQTLVNQFKPRLPF-LVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWR 436 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~-~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~ 436 (2100)
.++.++++|.+++++ .+|..++.++.+| ..++.++..+.+.|++|.|+.+|+++++++|+.|+++|+||+.++++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 467789999888762 5788899999999 47788999999999999999999999999999999999999998888999
Q ss_pred HHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc----------------CCCHH
Q 000133 437 ALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----------------SGSAK 499 (2100)
Q Consensus 437 ~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~~~ 499 (2100)
.|.+.|+||+|+++|+ +++.++++.|+.+|+||+. .++++..|.+. ++|+|++++. ..+.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5799999999999999995 78888888874 7999999763 12679
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhC-CcHHHHHHHhhcC------ChhHHHHHHHHHHHHhcC
Q 000133 500 AKEDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKNG------SANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~~------~~~~~~~Aa~aL~~L~~~ 556 (2100)
++++|+.+|.||+..+++.|..+.+. |+|+.|+.+++.+ +.+.++.|..+|+||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998778999999885 6689999999873 457899999999999985
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=213.31 Aligned_cols=765 Identities=12% Similarity=0.036 Sum_probs=457.1
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHhhhccc-hh
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN-EL 87 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~-~~ 87 (2100)
+.++++.+. +.++..|..|...|-.+.... ..+.++.|+..+.++ +..+|..|+.+|.+..... +.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 445666554 345667888888887765421 125677888888774 5789999999999865322 11
Q ss_pred hHHHHh---cCC--------hHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 88 RVKVLL---GGC--------IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 88 ~~~i~~---~g~--------i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
+..... ... -+.++..|.++++.. ..++.++..++....+ .. .-...+|.|+..+.+.. .+
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~--~w~~ll~~l~~~l~~~~-~~ 143 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VN--QWPELIPQLVANVTNPN-ST 143 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GT--CCTTHHHHHHHHHHCTT-CC
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----cc--ccHHHHHHHHHHHhCCC-CC
Confidence 110000 011 223777888777777 7788888888762110 00 12456788888886531 14
Q ss_pred chHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHhhcCcchhh-HHhhhchHHHHH
Q 000133 157 NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAADATKQLL 233 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~Lv 233 (2100)
+.++..++.+|..++.......-.-.-...++.+...+.++ +..+|..++.+|..++...+.... .......++.+.
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56777888899888743211000011124566778888876 688999999999887754332111 111123466667
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcch
Q 000133 234 KLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV 313 (2100)
Q Consensus 234 ~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~ 313 (2100)
+.+.. .+.++|..++.+|..+....+..-........++.++..+...+ ..++..++..+.+++......
T Consensus 224 ~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~v~~~al~~l~~l~~~~~~~ 293 (876)
T 1qgr_A 224 EATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI---------DEVALQGIEFWSNVCDEEMDL 293 (876)
T ss_dssp HHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHHHHHHhH
Confidence 66654 45789999999999998654432111222345666666664432 566777777776665311000
Q ss_pred hhh----ccccccCC-CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCC------CCChHHHHHHHHH
Q 000133 314 ISS----LGQSLESC-SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKP------RLPFLVQERTIEA 382 (2100)
Q Consensus 314 i~~----l~~~~~~~-~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~------~~~~~vq~~aa~a 382 (2100)
... ..+ -..| +...... ...+ ..+.+.+...+.. ..+..+|..+..+
T Consensus 294 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~-------------------~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~ 351 (876)
T 1qgr_A 294 AIEASEAAEQ-GRPPEHTSKFYA--KGAL-------------------QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (876)
T ss_dssp HHHHHHHHHH-SSCCSSCCCCHH--HHHH-------------------HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred hhhhcccccc-CCCccchhHHHH--HHHH-------------------HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence 000 000 0000 0000000 0000 1233444444432 1234578899999
Q ss_pred HHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHHHHH
Q 000133 383 LASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQEC 461 (2100)
Q Consensus 383 L~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~ 461 (2100)
+..++..-. ..+. ...++.+...+.+.++.+|..|+.++..++.+.. ....... ...++.++..++++++.+|..
T Consensus 352 l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~ 427 (876)
T 1qgr_A 352 LMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDT 427 (876)
T ss_dssp HHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHH
Confidence 988843211 1111 1345666777888899999999999999997643 2111111 246899999999999999999
Q ss_pred HHHHHHHhccCCcccH-HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCCh---------------hhHHHHHhC
Q 000133 462 SVALLCLLSNENDDSK-WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE---------------DIRACVESA 525 (2100)
Q Consensus 462 A~~aL~nLs~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~---------------~~~~~i~~~ 525 (2100)
|+++|.+++...+... ..-.-...++.|+..+.+. +.+++.++++|.+++.... .....+ .
T Consensus 428 a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 504 (876)
T 1qgr_A 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--E 504 (876)
T ss_dssp HHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--H
T ss_pred HHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--H
Confidence 9999999986433210 0001123577888888775 8999999999999986311 011111 2
Q ss_pred CcHHHHHHHhhcC---ChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhc-----------CC----cchHHHH
Q 000133 526 DAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTS-----------DL----PESKVYV 580 (2100)
Q Consensus 526 g~i~~Lv~lL~~~---~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~-----------~~----~~~~~~a 580 (2100)
..++.|+..+.+. +..++..+..+|..++..... ..++.++..+.. ++ ++++..+
T Consensus 505 ~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 505 LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Confidence 3667888888764 356788889999888775433 223334443332 11 3456667
Q ss_pred HHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC
Q 000133 581 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTK--EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 658 (2100)
Q Consensus 581 ~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~--~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~ 658 (2100)
..+++.+....+..+ +.... ...++.++.++++.+ ..++..+..++..++........ ......+|.|...+.+
T Consensus 585 ~~~l~~l~~~~~~~~-~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 585 CATLQNVLRKVQHQD-ALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL-KYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHTTSCHHH-HHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhh-hhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHcC
Confidence 788887765443111 11111 234788888887764 47899999999999864222111 1112367888899987
Q ss_pred C-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC--CCHHHHHHHHHHHHHHhc--CcHHHHHHHHcCcH
Q 000133 659 G-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS--PVLEVAEQATCALANLIL--DSEVSEKAIAEEII 733 (2100)
Q Consensus 659 ~-~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~--~~~evr~~aa~aL~~L~~--~~~~~~~~v~~~~v 733 (2100)
. +..++..++.+++.++...... ....-...++.|++.+.+ .+.+++..+.+++++++. +++. .. .-+.++
T Consensus 661 ~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~-~~-~l~~~~ 736 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLCRALQSN--IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEF-KK-YLEVVL 736 (876)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGG-GG-GHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhH-HH-HHHHHH
Confidence 6 7889999999999997643321 111124567788888877 467899999999999973 2332 11 225677
Q ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHHHHhcCccc--------hhHhhhhhccCcHHHHHHhh----hhcc-
Q 000133 734 LPATRVLCEGT-----------ISGKTLAAAAIARLLHSRKID--------YTITDCVNRAGTVLALVSFL----ESAS- 789 (2100)
Q Consensus 734 ~~L~~ll~~~~-----------~~~~~~Aa~aL~~l~~~~~~~--------~~~~~~~~~~g~l~~li~~l----~s~~- 789 (2100)
+.|.+.+.... ..+|..+..++..++...+.. ..+ ...++.++..+ .+.+
T Consensus 737 ~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 737 NTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLV------QPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp HHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGS------GGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHH------HHHHHHHHHHHHHHhcCCCC
Confidence 77777776442 157778888888777643321 111 11234444433 3331
Q ss_pred cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhh-hhccCChhHHHHHHHHHHHH
Q 000133 790 GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS-SIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 790 ~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~a~~~L~~L 853 (2100)
....+..|+.+|..+...... +. .........+.++++ ++.++++.+|+.|..++..+
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~~-----~~-~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFGK-----DV-LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT-----HH-HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc-----HH-HHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 223348888888888654421 00 111113446788888 99999999999999999887
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=190.33 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHH-hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHH
Q 000133 456 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 534 (2100)
Q Consensus 456 ~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 534 (2100)
.+.+..|...|.+++. +.++...+...|++|+|+. +|.++++.+|+.|+|+|++++.+++.++..+.+.|++|+|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567789999999995 6778888999999999999 9999999999999999999999889999999999999999999
Q ss_pred hhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHH
Q 000133 535 LKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI 613 (2100)
Q Consensus 535 L~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~l 613 (2100)
|+++ +..+++.|+++|++++.+..+ ....+...+|+|.|+.+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~-------------------------------------~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEA-------------------------------------GLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHH-------------------------------------HHHHHHHTTHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcH-------------------------------------HHHHHHHCCCHHHHHHH
Confidence 9964 788999999999999874321 11234456899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 000133 614 LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 614 L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
|+++++.++..|+|+|.+++.++++.+..+.+.|++|+|+.+|.+.+..++..++.+|++++...+
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999888899999999999999999999999999999999999987743
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=192.84 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhCCCccchhhhccccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCC
Q 000133 375 VQERTIEALASLYGNPLLSIKLENSEAKRLLVG-LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL 453 (2100)
Q Consensus 375 vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s 453 (2100)
-+..|+..|..+..+.++...+.+.|+++.|+. +|.++++.+|..|+++|++++.+++..++.+++.|++++|+.+|++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 477888888888888888888899999999999 9999999999999999999999999999999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHH
Q 000133 454 -SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 532 (2100)
Q Consensus 454 -~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 532 (2100)
++..+++.|+|+|+|++.+++.....+.+.||++.|+.+|.+++..++..|+|+|.+|+..+++.+..+.+.|++++|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 5889999999999999987888888999999999999999999999999999999999988889999999999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcC
Q 000133 533 WLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 533 ~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
.+|.++++.+++.++.+|++++..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-13 Score=169.64 Aligned_cols=475 Identities=16% Similarity=0.163 Sum_probs=325.9
Q ss_pred hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHH
Q 000133 226 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 305 (2100)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~n 305 (2100)
...|+.|+.-+.++.-.+-|+.|...|..+++. .+ .-+..+|++.|+..|.... .+.++.+.+..+|.|
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~-------~D~e~v~~~LetL~~ 88 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDR-------SDSEIIGYALDTLYN 88 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCT-------TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhccc-------ccHHHHHHHHHHHHH
Confidence 456888888888877788999999999999864 32 2345689999999997642 457788889999988
Q ss_pred hhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHH
Q 000133 306 ISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALAS 385 (2100)
Q Consensus 306 l~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~ 385 (2100)
+..+.+. +.... .. + ...++ +..+-+.
T Consensus 89 l~~~~~~-----------~~~~~-~~------------------------~------------~~~~~-~~~~~~d---- 115 (651)
T 3grl_A 89 IISNDEE-----------EEVEE-NS------------------------T------------RQSED-LGSQFTE---- 115 (651)
T ss_dssp HHCCC--------------------------------------------------------------C-HHHHHHH----
T ss_pred HhCCCCc-----------ccccc-cc------------------------c------------ccchH-HHHHHHH----
Confidence 7653210 00000 00 0 00000 0000000
Q ss_pred HhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc-chHHHHhC-CcHHHHHHhhCCCCHHHHHHHH
Q 000133 386 LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQGR-EGIQLLISLLGLSSEQQQECSV 463 (2100)
Q Consensus 386 L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~-g~i~~Lv~lL~s~~~~v~~~A~ 463 (2100)
..+.+.+.++.|+.+|++.+..+|.+++.+|..|+.+++. .+++|... +||+.|+.+|+++.+.+|.++.
T Consensus 116 --------~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 116 --------IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp --------HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred --------HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 1344567899999999999999999999999999999888 88999865 8999999999999999999999
Q ss_pred HHHHHhccCCcccHHHHHhcCChHHHHHhccCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCC
Q 000133 464 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGS----AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539 (2100)
Q Consensus 464 ~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 539 (2100)
..|.+|+.++.+.++.+.-.|+++.|++++..+. ..+.+.|+..|.||...++.++..|.+.|.++.|..+++.+.
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence 9999999988898999999999999999997653 478889999999999999999999999999999999997532
Q ss_pred h----hHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc
Q 000133 540 A----NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 615 (2100)
Q Consensus 540 ~----~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 615 (2100)
+ ..++ +.|+. .+-.++.+|-........ ....|..+...|+++.|++++.
T Consensus 268 ~~~~W~~Qk-----~~N~~------~~L~iIrlLv~~~~~~~~---------------t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 268 ENSGWSAQK-----VTNLH------LMLQLVRVLVSPNNPPGA---------------TSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp CSSCCCHHH-----HHHHH------HHHHHHHHHTCTTSCHHH---------------HHHHHHHHHHTTHHHHHHHHHT
T ss_pred cccccHHHH-----HHHHH------HHHHHHHHHhCCCCCCCC---------------CHHHHHHHHHCCCHHHHHHHHc
Confidence 2 1111 11110 011223333332221100 1113567778899999999887
Q ss_pred CC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcC-----chHHHHHh----hcC-CCHHHHHHHHHHHHHHhcCCchhHH
Q 000133 616 ST--KEETQAKSASALAGIFETRKDLRESSIAVK-----TLWSVMKL----LDV-GSECILVEASRCLAAIFLSVRENRE 683 (2100)
Q Consensus 616 s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g-----~v~~Lv~l----L~~-~~~~v~~~aa~aL~~L~~~~~~~~~ 683 (2100)
+. ...++..|..+++.+.++++..++.+.... ..|.++.+ +.+ ....++.+++.++.+.+..+.+.+.
T Consensus 322 ~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~ 401 (651)
T 3grl_A 322 ATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQG 401 (651)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 65 688999999999999999999999887653 23444444 433 4578899999999999988765554
Q ss_pred HHHHhC----------CCh---HHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHH-HH--------c---CcHHHHHH
Q 000133 684 VAAVAR----------DAL---SPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA-IA--------E---EIILPATR 738 (2100)
Q Consensus 684 ~~~~~~----------~~l---~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~-v~--------~---~~v~~L~~ 738 (2100)
. +... +.+ ..|...+.+.++---.-|+.+|.+++.+++..++. .. + -.++.++.
T Consensus 402 ~-i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~ 480 (651)
T 3grl_A 402 E-IVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTN 480 (651)
T ss_dssp H-HHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHH
T ss_pred H-HHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHH
Confidence 4 3322 111 12445566667744467888999999877665543 21 1 22445566
Q ss_pred HHccCC-hhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhc-c-cccchHhHHHHHH
Q 000133 739 VLCEGT-ISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA-S-GSVATSEALDALA 802 (2100)
Q Consensus 739 ll~~~~-~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~-~-~~v~~~~al~~L~ 802 (2100)
.+..++ ..++-+=..-|.-.+...+ .++.+.+.....++.|+..+... . .++. .++|.++.
T Consensus 481 ~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV~dFL~~~s~l~~L~~~i~~~~~~~~~l-vqGL~a~L 544 (651)
T 3grl_A 481 ILSQGSKIQTRVGLLMLLCTWLSNCP--IAVTHFLHNSANVPFLTGQIAENLGEEEQL-VQGLCALL 544 (651)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHSTTHHHHHHHHHHSCCCHHHHH-HHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHhCCh--HHHHHHHcCCchHHHHHHHHHhccCcchHH-HHHHHHHH
Confidence 665432 2244444455555554443 44555555566788888877532 2 2333 44555444
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-13 Score=175.78 Aligned_cols=518 Identities=12% Similarity=0.081 Sum_probs=340.3
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHH-HHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAAT-VLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 131 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 131 (2100)
.|-+..+-..|++++...|.++.. .+..+..+.+. ....+.+++++.+++.+.|+.+..++.+++.. +++
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e- 82 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPD- 82 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHH-
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--Cch-
Confidence 477888999999999887777555 44434444431 23477889999999999999998888888762 011
Q ss_pred cccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
+ ..-++..+.+-| ...++.++..|+.+|+++. .++.... .++.+.+++.++++.+|..|+.++.+
T Consensus 83 ----~-~~l~~n~l~kdL---~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~ 147 (591)
T 2vgl_B 83 ----M-AIMAVNSFVKDC---EDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAK 147 (591)
T ss_dssp ----H-HHTTHHHHGGGS---SSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHHHHc---CCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 0 011233333333 3356678888888888875 3333332 36789999999999999999999999
Q ss_pred HhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhh
Q 000133 212 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 291 (2100)
Q Consensus 212 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~ 291 (2100)
+...+++. +.+.+.++.|.++|.+ .+..++..|+.+|..++..+++........+.++.|+..+...
T Consensus 148 i~~~~p~~---~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--------- 214 (591)
T 2vgl_B 148 LHDINAQM---VEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--------- 214 (591)
T ss_dssp HHHSSCCC---HHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC---------
T ss_pred HHhhChhh---cccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC---------
Confidence 98765532 2235778999999975 4578999999999999876543210001112355566665432
Q ss_pred hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCC
Q 000133 292 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 371 (2100)
Q Consensus 292 ~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~ 371 (2100)
++..|-..+.+|.+++...+ . ....+.+.+..++++.+
T Consensus 215 ~~~~q~~il~~l~~l~~~~~----------------~--------------------------~~~~~l~~l~~~l~~~~ 252 (591)
T 2vgl_B 215 TEWGQIFILDCLSNYNPKDD----------------R--------------------------EAQSICERVTPRLSHAN 252 (591)
T ss_dssp CHHHHHHHHHHHHTSCCCSH----------------H--------------------------HHHHHHHHHTTCSCSST
T ss_pred CchHHHHHHHHHHHhCCCCh----------------H--------------------------HHHHHHHHHHHHHcCCC
Confidence 24455555555554432110 0 00134555666666554
Q ss_pred ChHHHHHHHHHHHHHhC----CCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHH
Q 000133 372 PFLVQERTIEALASLYG----NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447 (2100)
Q Consensus 372 ~~~vq~~aa~aL~~L~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 447 (2100)
+ .|+..|+.++..+.. +++....+. ....+.|+.++. +++.+|..|+.+|..+....+..-. ..+..+
T Consensus 253 ~-~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~ 324 (591)
T 2vgl_B 253 S-AVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVF 324 (591)
T ss_dssp T-HHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTT
T ss_pred h-HHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhh
Confidence 4 578999999998853 333322221 234566776664 7899999999999999887554211 112222
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCc
Q 000133 448 ISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 527 (2100)
Q Consensus 448 v~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~ 527 (2100)
... .+++..++..++..|.+++. +.+... .++.|...+.+.+.+.|..++++++.++...+... ...
T Consensus 325 ~~~-~~d~~~Ir~~al~~L~~l~~--~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~ 391 (591)
T 2vgl_B 325 FVK-YNDPIYVKLEKLDIMIRLAS--QANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERC 391 (591)
T ss_dssp SCC-TTSCHHHHHHHHHHHHHTCC--SSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHH
T ss_pred eec-cCChHHHHHHHHHHHHHHCC--hhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHH
Confidence 222 24458899999999999984 444333 45678888888899999999999999998654322 236
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 528 VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 528 i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
++.|++++.+..+.+...+..++.++...... ....++
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~------------------------------------------~~~~~v 429 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN------------------------------------------KYESII 429 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS------------------------------------------SCCTTH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcc------------------------------------------hHHHHH
Confidence 78999999988888877777777766432111 012346
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 608 ETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 608 ~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+.|.+.+. ..++.++..++|+|+..+...++. ...+..+++-+.+.+..++..++.++..+....++...
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~------~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~--- 500 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDNA------DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQ--- 500 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH------HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTH---
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccCH------HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHH---
Confidence 77777775 457888999999999987654321 13455555556677889999999999999876543210
Q ss_pred HhCCChHHHHHHh-C-CCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 687 VARDALSPLVVLA-G-SPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll-~-~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
..+..+++.. . +.++|+|.+|...+.-+..+++..
T Consensus 501 ---~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~ 537 (591)
T 2vgl_B 501 ---ELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTA 537 (591)
T ss_dssp ---HHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHH
T ss_pred ---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHH
Confidence 1244455543 4 478999999988776554444333
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-13 Score=180.19 Aligned_cols=464 Identities=13% Similarity=0.113 Sum_probs=324.5
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHH
Q 000133 360 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 439 (2100)
Q Consensus 360 ~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 439 (2100)
..-+.+.|++++....++.....+.......+. ..+...++.++.++++.+++.+..++..++..+++. +
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~- 84 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A- 84 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H-
Confidence 344566677665543333333333322222221 234666888999999999999999999887764442 1
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
.-.+..+.+-+.++++.++..|..+|+++. .++....+ ++.+.+++.+.++.+|..|++++.+++..+++.-
T Consensus 85 -~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 85 -IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp -HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 135678888899999999999999999986 35544333 5779999999999999999999999998665532
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhcc
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--------ATISQLTALLTSDLPESKVYVLDALKSMLSVV 591 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~--------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~ 591 (2100)
.+.+.++.|..+|.+.++.++..|+.+|..++.+... ..++.|+..+.+.++-.+....++++.+.
T Consensus 157 ---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~--- 230 (591)
T 2vgl_B 157 ---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN--- 230 (591)
T ss_dssp ---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---
T ss_pred ---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---
Confidence 2346789999999999999999999999999886532 23677787787777777777777665443
Q ss_pred CchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHH
Q 000133 592 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET---RKDLRESSIAVKTLWSVMKLLDVGSECILVEAS 668 (2100)
Q Consensus 592 ~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa 668 (2100)
+.++.. ....++.+..++++.++.++..|++++.++... +++....+ .....++|+.++. ++++++..++
T Consensus 231 ~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL 303 (591)
T 2vgl_B 231 PKDDRE-----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVAL 303 (591)
T ss_dssp CCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHH
T ss_pred CCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHH
Confidence 322211 123478888889999999999999999999742 23333322 2356788887765 7789999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHH
Q 000133 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGK 748 (2100)
Q Consensus 669 ~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~ 748 (2100)
.++..+....++. + ...+..+..+. +.+..+|..+...|.++...... ..+++.|..++++.+.+.+
T Consensus 304 ~~l~~i~~~~p~~-----~-~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~nv------~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 304 RNINLIVQKRPEI-----L-KQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQANI------AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHCCST-----T-TTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSSTH------HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHhChHH-----H-HHHHHhheecc-CChHHHHHHHHHHHHHHCChhhH------HHHHHHHHHHHhcCCHHHH
Confidence 9999997643321 1 11222222222 34488999999999998744332 2467778888988888999
Q ss_pred HHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCc
Q 000133 749 TLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSI 828 (2100)
Q Consensus 749 ~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l 828 (2100)
..+++++.++....+.. ....+..++++++...+.+. .+++.++..+.+..+. .....+
T Consensus 371 ~~~v~aI~~la~~~~~~--------~~~~v~~Ll~ll~~~~~~v~-~e~i~~l~~ii~~~p~------------~~~~~v 429 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQS--------AERCVSTLLDLIQTKVNYVV-QEAIVVIRDIFRKYPN------------KYESII 429 (591)
T ss_dssp HHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHSCS------------SCCTTH
T ss_pred HHHHHHHHHHHHhChhH--------HHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHCcc------------hHHHHH
Confidence 99999999998765422 24567888899887766666 7788888888765443 124567
Q ss_pred hhhhhhhcc-CChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhh---cCCcceecchhhHHHHHhh
Q 000133 829 TPIVSSIAD-ATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVIS---CTNPKVKIGGAALLICAAK 900 (2100)
Q Consensus 829 ~~L~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~---s~~~~~r~~~~~~~~~~~~ 900 (2100)
..|.+.+.+ ..+.++..+..+|++++. .+... ..+++.+++ ++++.+|..+.-++.++..
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~--------~~~~~----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAE--------RIDNA----DELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCT--------TCTTH----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccc--------cccCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 778888864 468899999999999933 33222 233444432 3567888877666666663
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-11 Score=156.47 Aligned_cols=444 Identities=16% Similarity=0.125 Sum_probs=299.9
Q ss_pred hHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCCh
Q 000133 97 IPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 175 (2100)
Q Consensus 97 i~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~ 175 (2100)
|+.|+.-+.+.. .+-|+.|..+|+.++. ++ +..+..+++|.|+..|+... .|.++-..++.+|.++....+
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y---~~~Vg~~~l~~li~~L~~d~-~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSK----KY---RLEVGIQAMEHLIHVLQTDR-SDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TT---TTHHHHHTHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHH----Hh---HHHhhhhhHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCCC
Confidence 555566665444 6789999999999986 44 23456788999999998865 444555567888888654332
Q ss_pred h---------------hHH--H-HHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc-hhhHHh-hhchHHHHHHH
Q 000133 176 G---------------FWA--A-TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVL-AADATKQLLKL 235 (2100)
Q Consensus 176 ~---------------~~~--~-i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~-~~~~i~-~~g~i~~Lv~l 235 (2100)
. .|- . +.+.+.|+.|+.+|++.+..+|.++..+|..++...+. ....+. ..+|++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 111 1 34678899999999999999999999999999987776 556666 46999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhh
Q 000133 236 LGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIS 315 (2100)
Q Consensus 236 L~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~ 315 (2100)
|.++. ..+|..+...|.+|+.++++.++.++-+|+++.|+..+....
T Consensus 175 L~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg-------------------------------- 221 (651)
T 3grl_A 175 LADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG-------------------------------- 221 (651)
T ss_dssp GGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT--------------------------------
T ss_pred HhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC--------------------------------
Confidence 99876 479999999999999999999999999999999999884311
Q ss_pred hccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchh
Q 000133 316 SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK 395 (2100)
Q Consensus 316 ~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~ 395 (2100)
T Consensus 222 -------------------------------------------------------------------------------- 221 (651)
T 3grl_A 222 -------------------------------------------------------------------------------- 221 (651)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHH------HHH---HHHHHH
Q 000133 396 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQ------QQE---CSVALL 466 (2100)
Q Consensus 396 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~------v~~---~A~~aL 466 (2100)
+ .+...+...++..|.||...|+.++..+.+.|+++.|..+++.+.+. ... .+..++
T Consensus 222 -----~---------~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iI 287 (651)
T 3grl_A 222 -----N---------SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLV 287 (651)
T ss_dssp -----G---------GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHH
T ss_pred -----C---------CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 0 00113344566677788888787888888888898888888754321 112 245566
Q ss_pred HHhccC------CcccHHHHHhcCChHHHHHhccCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCC-----cHHHHHH
Q 000133 467 CLLSNE------NDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESAD-----AVPALLW 533 (2100)
Q Consensus 467 ~nLs~~------~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vre~A~~aL~~L~~~~~~~~~~i~~~g-----~i~~Lv~ 533 (2100)
.-|... ...++..+.+.|+++.|++++... ...++..|..+++.+...++.++..+.+.. ..|+++.
T Consensus 288 rlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~ 367 (651)
T 3grl_A 288 RVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVV 367 (651)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHH
T ss_pred HHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHH
Confidence 666543 235688999999999999998765 788999999999999999999999988743 2244444
Q ss_pred H----hhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHH-HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 534 L----LKN-GSANGKEIAAKTLNHLIHKSDTATISQLTA-LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 534 l----L~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
+ +.+ .....|-.|+.++....+..+.+.. .++. ++...... ..+ . .. .-
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~-~i~~~llp~~~~~-----------------~~~----~-~s--~g 422 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQG-EIVSTLLPSTIDA-----------------TGN----T-VS--AG 422 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHH-HHHHTTSSCCCCC-----------------TTS----S-SC--HH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHH-HHHHhcCCccccc-----------------CCC----C-CC--cc
Confidence 3 333 2345666666666666553321100 0110 01000000 000 0 00 11
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc------C-----chHHHHHhh-cCCCHHHHHHHHHHHHHHh
Q 000133 608 ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV------K-----TLWSVMKLL-DVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 608 ~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~------g-----~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~ 675 (2100)
..|...+.+.++.--.-|+.+|.++..++++.++..... | .++.+...| .+.++++...-+.-|....
T Consensus 423 ~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL 502 (651)
T 3grl_A 423 QLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWL 502 (651)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 224455666777666679999999999887776665441 1 355556666 3445666666666666666
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhC
Q 000133 676 LSVRENREVAAVARDALSPLVVLAG 700 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~ 700 (2100)
.+.+..-+.-+-+...++.|++.+.
T Consensus 503 ~e~p~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 503 SNCPIAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hCChHHHHHHHcCCchHHHHHHHHH
Confidence 6666544442333446888887764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-11 Score=159.28 Aligned_cols=485 Identities=13% Similarity=0.053 Sum_probs=305.7
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccccc
Q 000133 55 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSK 134 (2100)
Q Consensus 55 ~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~ 134 (2100)
+....++++.+.+-+.|.-+--++..++.+++.-.. -.+..|.+-|.++++..|..|+++|.++.. ..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~---- 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SE---- 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HH----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HH----
Confidence 456778888888888888877788888765432111 246788889999999999999999999885 22
Q ss_pred chhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhh
Q 000133 135 IFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 135 ~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~ 214 (2100)
+ -..++|.+...|.+ .++.|+..|+.++.++....++. ++ +.++.+..+|.+.|+.++..|+.+|..++.
T Consensus 139 -~-~~~l~~~l~~~L~~---~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 139 -M-CRDLAGEVEKLLKT---SNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp -H-HHHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred -H-HHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 2 24567778888876 46789999999999997644432 22 678888999999999999999999988876
Q ss_pred cCcchhhHHhhhchHHHHHHHhcC--------------CCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhc
Q 000133 215 EDVSVCSRVLAADATKQLLKLLGS--------------GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATI 280 (2100)
Q Consensus 215 ~~~~~~~~i~~~g~i~~Lv~lL~~--------------~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~ 280 (2100)
.+++....+ ...++.|+++|.+ ..++-.+.....+|+.++..+++.... .++.|..++.
T Consensus 209 ~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~ 281 (618)
T 1w63_A 209 RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVAT 281 (618)
T ss_dssp SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHH
T ss_pred hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHh
Confidence 543221222 2557777777653 124567777888888887655433221 1222323221
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhH
Q 000133 281 APSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVE 360 (2100)
Q Consensus 281 ~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~ 360 (2100)
..+ ..+ .....+
T Consensus 282 ~~~--~~~-~~~~aV----------------------------------------------------------------- 293 (618)
T 1w63_A 282 NTE--TSK-NVGNAI----------------------------------------------------------------- 293 (618)
T ss_dssp TSC--CSS-THHHHH-----------------------------------------------------------------
T ss_pred ccc--ccc-chHHHH-----------------------------------------------------------------
Confidence 110 000 011222
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 361 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 361 ~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
...++.++..+...+... ..++..|..++.++++.+|..|+.+|..+...++. .+.
T Consensus 294 ---------------~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~- 349 (618)
T 1w63_A 294 ---------------LYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ- 349 (618)
T ss_dssp ---------------HHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG-
T ss_pred ---------------HHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH-
Confidence 233333333332111110 12455667777778888999999999888876432 222
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hhhH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-EDIR 519 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~-~~~~ 519 (2100)
.....++.++.+++..++..|..+|..++. ..+...+ ++.|...+.+.+.+.|..++.+|+.++..- +...
T Consensus 350 -~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~ 421 (618)
T 1w63_A 350 -RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR 421 (618)
T ss_dssp -GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred -HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 356678888888899999999999999984 3433333 467888888888999999999999998753 2232
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 599 (2100)
+ .++.|+++++.....++..+...+..+... .++.+..
T Consensus 422 ~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~----------------~p~l~~~-------------------- 459 (618)
T 1w63_A 422 W------HIDTIMRVLTTAGSYVRDDAVPNLIQLITN----------------SVEMHAY-------------------- 459 (618)
T ss_dssp H------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHH----------------SCSTHHH--------------------
T ss_pred H------HHHHHHHHHHhccchhHHHHHHHHHHHHhc----------------ChhHHHH--------------------
Confidence 2 357778888765544444444444433221 1222221
Q ss_pred hhhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChhh-HH-----HHHhcCchHHHHHhhc--CCCHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSS--TKEETQAKSASALAGIFETRKDL-RE-----SSIAVKTLWSVMKLLD--VGSECILVEASR 669 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s--~~~~~~~~Aa~aL~~L~~~~~~~-~~-----~~~~~g~v~~Lv~lL~--~~~~~v~~~aa~ 669 (2100)
+++.|++++.+ .++.+...++|+|+..+..-.+. .+ .+....+++.|..++. ..++.++..++.
T Consensus 460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lt 533 (618)
T 1w63_A 460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALT 533 (618)
T ss_dssp ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHH
T ss_pred ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 25666666654 34455567899999887420000 00 0000123555556554 567899999999
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 722 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~ 722 (2100)
++..++...++.... ....|-....+.++|+|.+|...+.-+..+++
T Consensus 534 a~~Kl~~~~~~~~~~------l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~ 580 (618)
T 1w63_A 534 AIMKLSTRFTCTVNR------IKKVVSIYGSSIDVELQQRAVEYNALFKKYDH 580 (618)
T ss_dssp HHHHHHTTCSSCHHH------HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhCcchHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHcCcHH
Confidence 999998876532211 12233445678899999999987765555443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-12 Score=154.00 Aligned_cols=253 Identities=14% Similarity=0.034 Sum_probs=203.0
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 519 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~ 519 (2100)
+.+.++.|+..|+++++.++..|+++|+++.. + +.++.|+++|.++++.+|..|+++|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45789999999999999999999999999872 2 368999999999999999999999999875322111
Q ss_pred HHHHhCCcHHHHH-HHhhcCChhHHHHHHHHHHHHhcCC---CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 520 ACVESADAVPALL-WLLKNGSANGKEIAAKTLNHLIHKS---DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv-~lL~~~~~~~~~~Aa~aL~~L~~~~---~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
..++.|. .++++.++.++..++++|+++.... .+..++.|+.++.+.++.+|..+..+|+.+.
T Consensus 90 ------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------- 156 (280)
T 1oyz_A 90 ------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 156 (280)
T ss_dssp ------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------
Confidence 1233444 2456788999999999999997432 3467888999999999999999999998543
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
...+++.|+.++.++++.+|..|+++|.++....+ .+++.|+.++.++++.++..++.+|+.+.
T Consensus 157 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 157 -------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 23469999999999999999999999999964433 35789999999999999999999999883
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCCh-hHHHHHHHH
Q 000133 676 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTI-SGKTLAAAA 754 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~-~~~~~Aa~a 754 (2100)
...+++.|+.++.+++ +|..++.+|+.+-. ..+++.|.++++++++ +....+..+
T Consensus 221 ------------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 221 ------------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp ------------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred ------------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 2458999999998865 89999999998753 3688999999977544 466666665
Q ss_pred HH
Q 000133 755 IA 756 (2100)
Q Consensus 755 L~ 756 (2100)
|.
T Consensus 277 l~ 278 (280)
T 1oyz_A 277 LK 278 (280)
T ss_dssp HT
T ss_pred hh
Confidence 53
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=152.57 Aligned_cols=256 Identities=14% Similarity=0.075 Sum_probs=203.3
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccH
Q 000133 398 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 398 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
....++.|+..|.++++.+|..|+++|.++... +.++.|+.+++++++.++..|+++|+.+.. .+...
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccc
Confidence 456789999999999999999999999988632 578999999999999999999999999974 22211
Q ss_pred HHHHhcCChHHHH-HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 478 WAITAAGGIPPLV-QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv-~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
.. .++.|. .++.++++.+|..++++|++++..++... ...++.|+.+++++++.++..|+.+|+++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 223333 24577899999999999999985433222 2367999999999999999999999998753
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
+..++.|+.++.++++.+|..+..+|+.+... ...+++.|+.++.++++.+|..|+++|+++..
T Consensus 158 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-- 221 (280)
T 1oyz_A 158 --KATIPLLINLLKDPNGDVRNWAAFAININKYD------------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-- 221 (280)
T ss_dssp ---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC------------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC------------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--
Confidence 56899999999999999999999999865311 23458999999999999999999999999873
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALA 715 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~ 715 (2100)
+ ..++.|+.++.+++ ++..++.+|+.+.. ..+++.|.+++.+ .++++...+..+|.
T Consensus 222 ~---------~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 K---------RVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp G---------GGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred H---------hhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2 57899999998765 88999999998832 2578999999865 56777777777664
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=153.80 Aligned_cols=464 Identities=13% Similarity=0.068 Sum_probs=322.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+....+.++.+++...++.+.-++..++..+++. +. -.+..|.+-++++++.++..|+.+|+++.. ++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~--- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV---HL--LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC--- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---HH--HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH---
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---HH--HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH---
Confidence 4455677888999999998888888888765432 11 356778888899999999999999999973 3321
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT- 559 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~- 559 (2100)
...++.+.++|.+.++.+|..|+.++.++...+++.. .+.++.+..++.+.++.++..|+.+|..++.....
T Consensus 141 --~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 141 --RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp --HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 2357889999999999999999999999997666532 25778888899999999999999999999865321
Q ss_pred -----CcHHHHHHHhhc---------------CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc----
Q 000133 560 -----ATISQLTALLTS---------------DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS---- 615 (2100)
Q Consensus 560 -----~~i~~L~~lL~~---------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~---- 615 (2100)
..+|.++.+|.+ .++-.+...+++|+.++... ++ .... ..+.|..++.
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~-~~~~-----~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DD-SSEA-----MNDILAQVATNTET 285 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HH-HHHT-----THHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HH-HHHH-----HHHHHHHHHhcccc
Confidence 456777777664 24556677778887765432 22 1111 2445555543
Q ss_pred --CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChH
Q 000133 616 --STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALS 693 (2100)
Q Consensus 616 --s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~ 693 (2100)
+.+..+...|++++.++... +..+ ..++..|.+++.++++.++..|+.+|..++...+ . .+ .....
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~-~~-~~~~~ 353 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----N-AV-QRHRS 353 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----H-HH-GGGHH
T ss_pred ccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----H-HH-HHHHH
Confidence 34568999999999998653 3222 1467889999998888999999999999965422 1 12 34678
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhh
Q 000133 694 PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVN 773 (2100)
Q Consensus 694 ~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~ 773 (2100)
.++..+++++..+|..|...|..++..... ..+++.|...+.+.+.+.+..+..++.++....+..
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-------- 419 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-------- 419 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred HHHHHccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--------
Confidence 899999999999999999999999854332 235688888888889999999999999998754332
Q ss_pred ccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhcc--CChhHHHHHHHHHH
Q 000133 774 RAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD--ATPLLQDKAIEILS 851 (2100)
Q Consensus 774 ~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~~~~~a~~~L~ 851 (2100)
....+..++++++.....+. .+++..+..+....+. .....+..|.+.+.+ .++.+...+.++|+
T Consensus 420 ~~~~v~~ll~lL~~~~~~v~-~~~~~~l~~ii~~~p~------------l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTAGSYVR-DDAVPNLIQLITNSVE------------MHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHTGGGSC-SSHHHHHHHHHHHSCS------------THHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhH-HHHHHHHHHHHhcChh------------HHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 13346778888887766666 7778888888765443 012345566667765 34445557899999
Q ss_pred HHhcCCcccchhcccc-----------cccchHHHHHHHhh--cCCcceecchhhHHHHHhhhchhhHHhhhhccccchh
Q 000133 852 RLCRDQPAVLGDEVTG-----------ASGCISSIARRVIS--CTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAP 918 (2100)
Q Consensus 852 ~L~~~~~~~~g~~~~~-----------~~~~~~~~~~~~l~--s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2100)
++ |+.+.. .......++..+++ ++++.+|.....++++++--. + ..
T Consensus 487 Ey--------~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~--~--------~~--- 545 (618)
T 1w63_A 487 EY--------GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRF--T--------CT--- 545 (618)
T ss_dssp HH--------HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTC--S--------SC---
T ss_pred hh--------HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhC--c--------ch---
Confidence 99 333322 01122345555665 578899998888887777431 0 11
Q ss_pred hHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhc
Q 000133 919 LIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTS 953 (2100)
Q Consensus 919 ~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 953 (2100)
...+..+|.....+ .+.+.+-.|...++.|+
T Consensus 546 -~~~l~~~L~~~~~~---~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 546 -VNRIKKVVSIYGSS---IDVELQQRAVEYNALFK 576 (618)
T ss_dssp -HHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHc
Confidence 22333334433322 35566667777777643
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=132.74 Aligned_cols=190 Identities=16% Similarity=0.153 Sum_probs=162.8
Q ss_pred ccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccH
Q 000133 398 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK 477 (2100)
Q Consensus 398 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~ 477 (2100)
..+.++.|+.+|+++++.+|..|+.+|..+... ++++.|+.+++++++.++..|+.+|+.+.. +
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~--- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 80 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc-----------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 356788999999999999999999999886542 689999999999999999999999999863 2
Q ss_pred HHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 478 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 478 ~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
++++.|+++|.++++.+|..|+++|.++.. ...++.|+.+++++++.++..|+.+|+++.
T Consensus 81 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--- 140 (211)
T 3ltm_A 81 ------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--- 140 (211)
T ss_dssp ------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---
Confidence 378999999999999999999999999864 247899999999999999999999999994
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
++..++.|..++.+.++.+|..+..+|+.+. ...+++.|..++.++++.+|..|..+|.++.....
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 4678999999999999999999999999652 23458899999999999999999999999987643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=129.41 Aligned_cols=185 Identities=17% Similarity=0.155 Sum_probs=162.7
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHH
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 478 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~ 478 (2100)
.+..+.++.+|+++++.+|..|+.+|..+... +.++.|+.+++++++.++..|+.+|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 45678899999999999999999999986542 678999999999999999999999999863 2
Q ss_pred HHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 479 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 479 ~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
++++.|+.+|.++++.+|..|+++|.++.. ...++.|+.++++.++.++..|+++|+++. +
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~ 136 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---D 136 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C
Confidence 378999999999999999999999999864 237899999999999999999999999994 4
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
+..++.|..++.+.++.+|..+..+|+.+. ...+++.|..++.++++.+|..|..+|.++.
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999652 2345899999999999999999999998875
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.6e-10 Score=143.33 Aligned_cols=374 Identities=12% Similarity=0.058 Sum_probs=247.1
Q ss_pred cCcHHHHHHHHhcC--CHHHHHHHHHHHHHhhcchhh-h--------hhhhh---cCChHHHHHhhccCChhhHHHHHHH
Q 000133 1230 FAAVSQLVAVLRLG--GRGARYSAAKALESLFSADHI-R--------NAESA---RQAVQPLVEILNTGLEREQHAAIAA 1295 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~--~~~~r~~Aa~aL~~L~~~~~~-~--------~~i~~---~~~i~~Lv~lL~~~~~~~~~~A~~a 1295 (2100)
++.+..|..+|.++ +...|..|+..|.++...... . ..+.. ...-..|+..|.+.+... +.++.+
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~ 112 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQC 112 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHH
Confidence 46778888888876 468899999999988542110 0 01111 122356778888877777 778888
Q ss_pred HHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC-ChhhHHHHHHHHHHHhcCc--chHHHHHhhcChHHHHHHHhcC--
Q 000133 1296 LVRLLSENPSRALAVADVEMNAVDVLCRILSSNC-SMELKGDAAELCGVLFGNT--RIRSTVAAARCVEPLVSLLVTE-- 1370 (2100)
Q Consensus 1296 L~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~-~~~~~~~a~~~L~~L~~~~--~~r~~~~~~~~i~~Lv~lL~~~-- 1370 (2100)
+..++....... .-.+.++.|+..+.+.. +..+++.+..++..++... +.. .......++.++..+.+.
T Consensus 113 i~~ia~~~~~~~-----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 113 VAGIACAEIPVN-----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHGGGT-----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHhcccc-----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCCCCC
Confidence 888885321110 01357888999887743 6789999999999988642 211 111234667788888887
Q ss_pred CchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHH
Q 000133 1371 FSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448 (2100)
Q Consensus 1371 ~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~ 1448 (2100)
++.+|..|+.++.++.. .+....+....-+++.|...+.+.+..+|+.++.+|..++...++.-........++.++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998652 1111111111124677778888999999999999999998765321111111157777888
Q ss_pred HhccCChhHHHHHHHHHHHHHhcc------------------CCcccc---cccCchHHHHHHhccCC-----CCchhHh
Q 000133 1449 ILHEAPDFLCSAFAELLRILTNNA------------------GIAKGP---SAAKVVEPLFLLLTRSE-----FGPDGQH 1502 (2100)
Q Consensus 1449 ~L~~~~~~~~~~aa~lL~~Ls~~~------------------~~~~~~---~~~~~v~~Ll~ll~~~~-----~~~~~~~ 1502 (2100)
.+.+.++.++..+.+++..++... ...... .....++.++..+...+ +++..++
T Consensus 267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 888888888988888887776542 000000 01345566666665432 2356778
Q ss_pred HHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcccc---ccccccccCchHHHHHHhcc
Q 000133 1503 SALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ---LQKDPVTQQVIGPLIRVLGS 1579 (2100)
Q Consensus 1503 ~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~---~~~~l~~~g~i~~Lv~lL~s 1579 (2100)
.|..+|..+...... . .-..+++.+...|.+.+..+|..++.+|+.++.... ++..+ ..+++.|+.+|++
T Consensus 347 ~a~~~L~~l~~~~~~--~---~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d 419 (462)
T 1ibr_B 347 AAGVCLMLLATCCED--D---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD 419 (462)
T ss_dssp HHHHHHHHHHHHTTT--T---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccH--H---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC
Confidence 899999888644321 1 112356667778889999999999999999986322 22222 4688999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhc
Q 000133 1580 GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIIL 1617 (2100)
Q Consensus 1580 ~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~ 1617 (2100)
.++.+|..|+.+|.+++..-+..+.....+++++..|.
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 99999999999999999654332212234555555443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-10 Score=130.74 Aligned_cols=190 Identities=24% Similarity=0.258 Sum_probs=160.4
Q ss_pred hhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhH
Q 000133 1356 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1435 (2100)
Q Consensus 1356 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~ 1435 (2100)
....++.|+..|.++++.+|..|+.+|..+.. .++++.|+.+++++++.+|..|+.+|+.+....
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~----- 81 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER----- 81 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-----
Confidence 35688999999999999999999999998864 357899999999999999999999999997543
Q ss_pred HHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCC
Q 000133 1436 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHP 1515 (2100)
Q Consensus 1436 ~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~ 1515 (2100)
.++.+++.|.+++..++..++..|..+.. ...++.|+.++.+++ +.++..|..+|.++
T Consensus 82 ------~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~---- 139 (211)
T 3ltm_A 82 ------AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEI---- 139 (211)
T ss_dssp ------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH----
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHHc----
Confidence 78999999999998999988877755532 135889999998766 88999999999985
Q ss_pred CcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 000133 1516 QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1595 (2100)
Q Consensus 1516 ~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~L 1595 (2100)
.....++.|+.+|.++++.+|..++.+|+++.. ..+++.|..+++++++.+|..|..+|.++
T Consensus 140 --------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 140 --------GDERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999964 35778999999999999999999999999
Q ss_pred hcCCh
Q 000133 1596 ALTWP 1600 (2100)
Q Consensus 1596 s~~~~ 1600 (2100)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87653
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-08 Score=127.87 Aligned_cols=496 Identities=14% Similarity=0.080 Sum_probs=297.6
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+.+..++++.+.+-+.|.-+--++..++++++.-.. -.+..+.+-|.++|+..|..|+++|.++.. ..
T Consensus 73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e-- 142 (621)
T 2vgl_A 73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVGS----RE-- 142 (621)
T ss_dssp CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH--
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH--
Confidence 34567888899999999998888888888865442221 136677888899999999999999998875 22
Q ss_pred ccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 212 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L 212 (2100)
.-..++|.+...|.+ ...++.|+..|+.++..+....++. +...+.++.+.++|.+.|+.++.+|..+|..+
T Consensus 143 ----~~~~l~~~v~~~l~~-~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 143 ----MAEAFAGEIPKILVA-GDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ----HHHHHTTHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 223567777787743 2356789999999999887544332 22248899999999999999999999999888
Q ss_pred hhcCcchhhHHhhhchHHHHHHHhcCC-C-----------CHHHHHHHHHHHHHhhcC-ChHhHHHHHhCCChHHHHHhh
Q 000133 213 MEEDVSVCSRVLAADATKQLLKLLGSG-N-----------EASVRAEAAGALKSLSDH-CKDARREIAGSNGIPAMINAT 279 (2100)
Q Consensus 213 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~-----------~~~v~~~Aa~aL~~Ls~~-~~~~~~~i~~~g~i~~Lv~ll 279 (2100)
+..++.....+ -...+..|-+++..+ . ++-.+......|..++.. +++.+..+.+ .++.++..+
T Consensus 215 ~~~~~~~~~~~-~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~ 291 (621)
T 2vgl_A 215 AQKNPEEFKTS-VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA 291 (621)
T ss_dssp HHHCHHHHTTH-HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred HHhChHHHHHH-HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence 86654321111 112233333444321 1 356777777777777642 2333333222 122222221
Q ss_pred cCCCc-chhhhhh-hHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCch
Q 000133 280 IAPSK-EFMQGEY-AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPL 357 (2100)
Q Consensus 280 ~~~~~-e~~~~~~-~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~ 357 (2100)
....+ ...++.. ...+..
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~------------------------------------------------------------ 311 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLF------------------------------------------------------------ 311 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHH------------------------------------------------------------
T ss_pred ccCcccccccccchHHHHHH------------------------------------------------------------
Confidence 11000 0000000 012222
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHH
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 437 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~ 437 (2100)
.++.++..+..+++... .++..|..++.+.++.+|..++..|..++...+. ...
T Consensus 312 --------------------ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~ 365 (621)
T 2vgl_A 312 --------------------EAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEA 365 (621)
T ss_dssp --------------------HHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHH
T ss_pred --------------------HHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHH
Confidence 22233332221111111 2355567777778899999999999999876542 123
Q ss_pred HHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC-C
Q 000133 438 LQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-S 515 (2100)
Q Consensus 438 i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~ 515 (2100)
+. .-...++..++ +++..++..+...|..++. +.+...+ +..|...+.+.+.+.+..++.+++.++.. .
T Consensus 366 ~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 366 VK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp HH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 32 34677778888 8899999999999999983 5554444 45677777778889999999988888752 1
Q ss_pred hhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 516 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 516 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
+...+ .+..|++++......+...+...+..+... .++.+.+
T Consensus 437 ~~~~~------~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~----------------~~~~~~~---------------- 478 (621)
T 2vgl_A 437 VDYTW------YVDTILNLIRIAGDYVSEEVWYRVIQIVIN----------------RDDVQGY---------------- 478 (621)
T ss_dssp SSTHH------HHHHHHHHHHHHGGGSCSHHHHHHHHHHGG----------------GCSCHHH----------------
T ss_pred CcHHH------HHHHHHHHHHhhcccchHHHHHHHHHHHhC----------------ChhHHHH----------------
Confidence 22222 356777777654333333333333333221 1222222
Q ss_pred HHHHhhhccchHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHH
Q 000133 596 ILREGSAANDAVETMIKILSST--KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~--~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
++..|.+.+.++ ...+-+.++|.++..+..-++.. ...-...+..+..-+...+..++.....++..
T Consensus 479 ----------~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~-~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~K 547 (621)
T 2vgl_A 479 ----------AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDP-RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIK 547 (621)
T ss_dssp ----------HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSST-TSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 244555656543 34566788899998764211100 00000124455555677888999999999999
Q ss_pred HhcCCchhHHHHHHhCCChHHHH-HHhC--CCCHHHHHHHHHHHHHHhcC
Q 000133 674 IFLSVRENREVAAVARDALSPLV-VLAG--SPVLEVAEQATCALANLILD 720 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv-~ll~--~~~~evr~~aa~aL~~L~~~ 720 (2100)
++...++.... +..++ .... +.++|+|.+|..-+.-+..+
T Consensus 548 l~~~~p~~~~~-------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 548 FVNLFPEVKAT-------IQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHCGGGHHH-------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHChHHHHH-------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 97655432211 22222 2233 88999999998776554443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-10 Score=126.97 Aligned_cols=184 Identities=21% Similarity=0.150 Sum_probs=160.9
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccc
Q 000133 526 DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 605 (2100)
Q Consensus 526 g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~ 605 (2100)
+..+.++++|+++++.++..|+.+|+.+. ++..++.|+.++.++++.+|..+..+|+.+. ...
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~~ 76 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DER 76 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CHH
Confidence 46789999999999999999999999884 3578999999999999999999999998542 335
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 606 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 606 ~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
+++.|+.+|.++++.+|..|+++|+++... ..++.|+.++.++++.++..++.+|+.+..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 136 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 136 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 699999999999999999999999998642 478999999999999999999999999832
Q ss_pred HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 686 AVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
...++.|..++.++++.+|..|+.+|+.+.. ..+++.|..++++++..+|..|.++|.++-
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998832 357889999999999999999999998754
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-09 Score=137.97 Aligned_cols=406 Identities=11% Similarity=0.046 Sum_probs=258.2
Q ss_pred HHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcCChHhHHHHH
Q 000133 189 ILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDARREIA 267 (2100)
Q Consensus 189 ~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~Aa~aL~~Ls~~~~~~~~~i~ 267 (2100)
.++.-+.+++.++|..|-..|..+...+ ..+....|+.++.+.+ +..+|..|+..|.++..........-
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~- 75 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ- 75 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH-
Confidence 4455556789999999999886543210 2355778888887753 57899999999999876432211100
Q ss_pred hCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccc
Q 000133 268 GSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSK 347 (2100)
Q Consensus 268 ~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~ 347 (2100)
.......+. ...++.
T Consensus 76 ----~~~~~~~l~------------~~~~~~------------------------------------------------- 90 (462)
T 1ibr_B 76 ----YQQRWLAID------------ANARRE------------------------------------------------- 90 (462)
T ss_dssp ----HHHHHHTSC------------HHHHHH-------------------------------------------------
T ss_pred ----HHhhhhcCC------------HHHHHH-------------------------------------------------
Confidence 000001110 011111
Q ss_pred cCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC--CccchhhhccccHHHHHHhhcCC--CHHHHHHHHHH
Q 000133 348 AESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGLITMA--TNEVQEELVRA 423 (2100)
Q Consensus 348 ~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~a 423 (2100)
+...++..+...++. + ..++.+++.++.. |. . .-.+.++.|+..+.++ ++.++..++.+
T Consensus 91 -----------ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~-~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 91 -----------VKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPV-N---QWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp -----------HHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGG-T---CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccc-c---ccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 111122222222221 2 3455556555322 21 0 1246788899999888 89999999999
Q ss_pred HHHhhccC-ccchHHHHhCCcHHHHHHhhCCC--CHHHHHHHHHHHHHhccCCcccHH-HHHhcCChHHHHHhccCCCHH
Q 000133 424 LLKLCNNE-GSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKW-AITAAGGIPPLVQILESGSAK 499 (2100)
Q Consensus 424 L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~s~--~~~v~~~A~~aL~nLs~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~ 499 (2100)
|..++... +....... ...++.++..++++ ++.+|..|+.+++++.....+... .....-.++.|.+++.+.+++
T Consensus 154 l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 99999753 21111111 13578888999887 799999999999987632221100 001111366677778888999
Q ss_pred HHHHHHHHHHHHhcCChhh-HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-------------------C-
Q 000133 500 AKEDSASILRNLCNHSEDI-RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-------------------D- 558 (2100)
Q Consensus 500 vre~A~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-------------------~- 558 (2100)
+|..++++|..++...++. +..+ ..+.++.++..+++.++.++..+...+..++... .
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 9999999999998643321 1111 1167788888888889999999999888887531 0
Q ss_pred --------CCcHHHHHHHhhc-------CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHH
Q 000133 559 --------TATISQLTALLTS-------DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQA 623 (2100)
Q Consensus 559 --------~~~i~~L~~lL~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~ 623 (2100)
+..+|.++..+.+ +++.+|..+..+|+.++...+. ... ...++.+...+.+.+..+|+
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHH
Confidence 1234445555543 3457899999999998876552 211 12377888888999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh
Q 000133 624 KSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA 699 (2100)
Q Consensus 624 ~Aa~aL~~L~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll 699 (2100)
.|+.+|+.++.+.. +... .....++|.++..+.++++.++..|+.+|++++...... +.....++++++.+
T Consensus 385 aal~~l~~l~~~~~~~~~~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~----~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA----AINDVYLAPLLQCL 456 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTC-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG----CCSTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc----cccHHHHHHHHHHH
Confidence 99999999998643 1111 122568999999999999999999999999997643210 11234566666543
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-10 Score=117.52 Aligned_cols=112 Identities=20% Similarity=0.316 Sum_probs=92.4
Q ss_pred CceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCC-eEEEEeecCCccCCccc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSKMGKSSF 2057 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2057 (2100)
.|+|+|.+..++. |....+.++++ .+-+++|||+. .+.||+|||.|+|.+..|+..+ .|+|.|||.++||++.+
T Consensus 22 sL~V~l~~a~~Lp---g~~Dp~akv~F-Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl 97 (144)
T 3l9b_A 22 ALIVHLKTVSELR---GRADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL 97 (144)
T ss_dssp EEEEEEEEEESCC---SCEEEEEEEEE-TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred EEEEEEEEecCCC---CCCCCeEEEEE-eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence 4899999999999 56667778888 79999999998 5999999999999999866554 99999999999998888
Q ss_pred -ceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEE
Q 000133 2058 -GKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEF 2095 (2100)
Q Consensus 2058 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2095 (2100)
|.++|.+.+|+.+|...-.-+|..++.+-..-++++++
T Consensus 98 IG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l 136 (144)
T 3l9b_A 98 IGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEV 136 (144)
T ss_dssp EEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEE
Confidence 99999999999999998887884444332223344444
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.5e-10 Score=117.78 Aligned_cols=103 Identities=16% Similarity=0.366 Sum_probs=90.0
Q ss_pred CCCceeeeeccchhhh-----hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ-----SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|.+..++.. ..|.+.-|+.+.+++ ...++|+|++++.||+|+|.|.|.+. .+..+.|+|+|+|++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC-TTSCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEec-CCCCCEEEEEEEECC
Confidence 5889999999999974 457788999999986 36778999999999999999999986 456889999999999
Q ss_pred ccCCcccceEEEEEeeEEeecccccceeecC
Q 000133 2051 KMGKSSFGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.++.+.+|++.|++..+.........|.|.+
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQ 111 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence 9998888999999999876666778888854
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=124.57 Aligned_cols=470 Identities=13% Similarity=0.068 Sum_probs=308.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+....+.++.+++...++.+.-++..++..+++.. + -.+..+.+=+.++++-++..|..+|+++. .++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~--~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-- 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI--R---LINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-- 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH--H---HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH--H---HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH--
Confidence 45667889999999999999999999887755421 1 24566777778999999999999999996 344322
Q ss_pred HhcCChHHHHHhc--cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000133 481 TAAGGIPPLVQIL--ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 558 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL--~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~ 558 (2100)
..++.+.+++ .+.++.+|..|+.++.++...+++.- ...+.++.|.++|.+.++.++..|..+|..++.+..
T Consensus 146 ---~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 146 ---AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp ---HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 3578899999 88999999999999999998665432 124789999999999999999999999999987542
Q ss_pred C---CcHHHHHHHhh----cC-------------CcchHHHHHHHHHHHHhccCc--hhHHHHhhhccchHHHHHHHh--
Q 000133 559 T---ATISQLTALLT----SD-------------LPESKVYVLDALKSMLSVVSF--SDILREGSAANDAVETMIKIL-- 614 (2100)
Q Consensus 559 ~---~~i~~L~~lL~----~~-------------~~~~~~~a~~aL~~l~~~~~~--~~~~~~~i~~~~~i~~Lv~lL-- 614 (2100)
. ..+|.++..|. .+ ++-.+...++.|+ ..... ++ ....+. +.++.++..+
T Consensus 220 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~---~~~~~~d~~-~~~~l~--~~L~~il~~~~~ 293 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ---CYPPPEDPA-VRGRLT--ECLETILNKAQE 293 (621)
T ss_dssp HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG---GSSSCSSHH-HHHHHH--HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH---HhCCCCCHH-HHHHHH--HHHHHHHHhhcc
Confidence 2 24555554432 22 2224444444444 33332 22 122210 1123333222
Q ss_pred -------cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 000133 615 -------SSTK--EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 685 (2100)
Q Consensus 615 -------~s~~--~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~ 685 (2100)
.+.+ ..+...|+.++..+... ++... .++..|.+++.+++++++..++.++..++...++. .
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~- 364 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E- 364 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCc-HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-
Confidence 1123 37888899999998743 33322 46778999998889999999999999997654321 1
Q ss_pred HHhCCChHHHHHHhC-CCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCcc
Q 000133 686 AVARDALSPLVVLAG-SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 764 (2100)
Q Consensus 686 ~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~ 764 (2100)
++ ......++..++ +++..+|..+...|..++.... . ..++..|...+...+.+.+..+..++..+....+.
T Consensus 365 ~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N-v-----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 365 AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN-A-----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH-H-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh-H-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 12 356788888888 9999999999999998874322 2 35777888888888888999999999988753332
Q ss_pred chhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCC--hhH
Q 000133 765 DYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT--PLL 842 (2100)
Q Consensus 765 ~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~~ 842 (2100)
. ....+..+++++....+.+. .+++..+..+....+.. -...+..|...+.+.. ..+
T Consensus 438 ~--------~~~~v~~Ll~ll~~~~~~v~-~ev~~~l~~ii~~~~~~------------~~~~~~~l~~~l~~~~~~~~l 496 (621)
T 2vgl_A 438 D--------YTWYVDTILNLIRIAGDYVS-EEVWYRVIQIVINRDDV------------QGYAAKTVFEALQAPACHENL 496 (621)
T ss_dssp S--------THHHHHHHHHHHHHHGGGSC-SHHHHHHHHHHGGGCSC------------HHHHHHHHHHHHTSSSCCHHH
T ss_pred c--------HHHHHHHHHHHHHhhcccch-HHHHHHHHHHHhCChhH------------HHHHHHHHHHHHcCccchHHH
Confidence 1 13455667777777666666 77777777776544331 1123444555665543 355
Q ss_pred HHHHHHHHHHHhcCCcccchhcccccccc-hHHHHHHH---hhcCCcceecchhhHHHHHhhhchhhHHhhhhccccchh
Q 000133 843 QDKAIEILSRLCRDQPAVLGDEVTGASGC-ISSIARRV---ISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAP 918 (2100)
Q Consensus 843 ~~~a~~~L~~L~~~~~~~~g~~~~~~~~~-~~~~~~~~---l~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2100)
-..+..+++.+ |+.+....++ +...++.+ ...+++.+|...--+++++..- ++ .
T Consensus 497 i~~~~wilGEy--------~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~--~p------------~ 554 (621)
T 2vgl_A 497 VKVGGYILGEF--------GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL--FP------------E 554 (621)
T ss_dssp HHHHHHHHHHH--------THHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH--CG------------G
T ss_pred HHHHHHHhcch--------HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--Ch------------H
Confidence 56677899888 5556554433 22223322 2456788888777776666532 11 1
Q ss_pred hHHHHHHHHhhhcC--CCCcCCCCChhHHHHHhhhhc
Q 000133 919 LIQSLVTMLSVVEA--SPLRNQGNDDKEAISIYRYTS 953 (2100)
Q Consensus 919 ~v~~Lv~~l~~~~~--~~~~~~~~~~~~~~~~l~~l~ 953 (2100)
....+...|+.... + .+.+.+-.|....+.|.
T Consensus 555 ~~~~i~~~l~~~~~~~~---~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 555 VKATIQDVLRSDSQLKN---ADVELQQRAVEYLRLST 588 (621)
T ss_dssp GHHHHHHHHSSHHHHSC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHc
Confidence 12334444443332 2 34555666666666653
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=116.63 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=97.2
Q ss_pred cCCCceeeeeccchhhhhh-CCCcceEEEecCCCCCccccccccCCCccccccceeccccCC--CCCeEEEEeecCCccC
Q 000133 1977 LPGTLVVIIKRGNNMKQSV-GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPP--KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 2053 (2100)
.+|.|.|+|.+..++...- |...-|+.+.+++ ..++|+|++++.||+|+|.|.|.+..++ ..+.|+|+|+|++.||
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKD-EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSS-CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC-EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 3799999999999987532 6678899999985 5699999999999999999999998654 4679999999999998
Q ss_pred Cc-ccceEEEEEeeEEeeccccccee---ecCCCCCCCCcceEEEEEecC
Q 000133 2054 KS-SFGKVTIQIDRVVMLGAVAGEYT---LLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
++ .+|++.|.+..+...+.....|. |....++...=++.+++.|.+
T Consensus 84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 77 56999999999877777777787 533332211224668888865
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-10 Score=121.59 Aligned_cols=114 Identities=17% Similarity=0.243 Sum_probs=94.0
Q ss_pred hcCCCceeeeeccchhhhhh------------CCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1976 CLPGTLVVIIKRGNNMKQSV------------GNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
...|.|.|+|.+..++...= |.+.-++.+++|+....+||+++++.||+|||.|++.+. .++.|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~---~~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVT---DGGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEE---EECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcC---CCCEEE
Confidence 56799999999999986321 446789999998766668999999999999999998864 367999
Q ss_pred EEeecCCccCCc-ccceEEEEEeeEEee----cccccceeecCCCCCCCCcceEEEEEec
Q 000133 2044 ISCKNKSKMGKS-SFGKVTIQIDRVVML----GAVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2044 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
|+|+++..||++ .+|+++|++.++... +.+.+-|.|.+ .|+.+ +++.|+
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~---~G~i~---l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP---EGKVF---VVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS---SCEEE---EEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC---CcEEE---EEEEEE
Confidence 999999999965 669999999998865 67888899965 55544 777775
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-06 Score=115.46 Aligned_cols=339 Identities=14% Similarity=0.085 Sum_probs=229.8
Q ss_pred hhcCCCCChHHHHHHHHHHHHH-hCCCccchhhhccccHHHHHHhhc---CCCHHHHHHHHHHHHHhhccCccchHHHHh
Q 000133 365 NQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENSEAKRLLVGLIT---MATNEVQEELVRALLKLCNNEGSLWRALQG 440 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L-~~~~~~~~~l~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~ 440 (2100)
.++...++. .+..|+-+|+-+ ..+.+ +++..|-..+. +.++.++..|+.+|+-+..+...
T Consensus 365 ~Wl~k~~~~-~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~------- 428 (963)
T 4ady_A 365 PWLGKAQNW-AKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR------- 428 (963)
T ss_dssp HHHHHCCTH-HHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------
T ss_pred hhhhccchH-HHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------
Confidence 344433333 255666666655 22221 34555555665 56789999999999998887532
Q ss_pred CCcHHHHHHhhCCCC--------HHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000133 441 REGIQLLISLLGLSS--------EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 512 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~--------~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~ 512 (2100)
.++..|...+.+++ +.++..|+..|+....+... ..+++.|...+.+.+..+++.|+.+|+.+-
T Consensus 429 -~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 429 -DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp -HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 25677777777554 66888888888887543221 125677888888888888889999999874
Q ss_pred cCChhhHHHHHhCCcHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhc
Q 000133 513 NHSEDIRACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDTATISQLTALLT-SDLPESKVYVLDALKSMLSV 590 (2100)
Q Consensus 513 ~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~ 590 (2100)
..+... .++..|++.+. +.+..+++.++.+|+.+.. +.+..++.++..|. +.++-+|..+.-+++ +++.
T Consensus 501 vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-g~~e~~~~li~~L~~~~dp~vRygaa~alg-lAya 571 (963)
T 4ady_A 501 LGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY-GRQELADDLITKMLASDESLLRYGGAFTIA-LAYA 571 (963)
T ss_dssp TTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH-HHTT
T ss_pred cccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhc
Confidence 432211 14566666554 4577899999999998855 44578889988876 466778888887777 3333
Q ss_pred cCchhHHHHhhhccchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh-cCCCHHHHHHHH
Q 000133 591 VSFSDILREGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEAS 668 (2100)
Q Consensus 591 ~~~~~~~~~~i~~~~~i~~Lv~l-L~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa 668 (2100)
.+ .+..+|+.|+.. ..+.++.+|+.|+.+|+.+..+.+ ..++.++..+ .+.++.++..++
T Consensus 572 GT---------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 572 GT---------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp TS---------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHH
T ss_pred CC---------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHH
Confidence 32 122347766664 467789999999999999987754 3467777654 678899999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHcc--CChh
Q 000133 669 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE--GTIS 746 (2100)
Q Consensus 669 ~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~--~~~~ 746 (2100)
.+++.++.+++. ..++..|..++.+++..||..|+.+|+.+..+.......--......|.....+ .+..
T Consensus 634 lALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~ 705 (963)
T 4ady_A 634 FALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGL 705 (963)
T ss_dssp HHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHH
Confidence 999999887641 135788999999999999999999999998553322100002334445555543 3444
Q ss_pred HHHHHHHHHHHHHhcC
Q 000133 747 GKTLAAAAIARLLHSR 762 (2100)
Q Consensus 747 ~~~~Aa~aL~~l~~~~ 762 (2100)
.+..+.-|+.-+-.+.
T Consensus 706 ~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 706 AKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6777766665554333
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=110.12 Aligned_cols=120 Identities=18% Similarity=0.370 Sum_probs=90.7
Q ss_pred cCCCceeeeeccchhhhh--hCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCCCCCeEEEEeecC
Q 000133 1977 LPGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
-.|.|.|+|++..++... .|.+.-|+.+.+++. ..++|+|++++.||+|+|.|.|.+. +..+.|+|+|+|+
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~l~~~V~d~ 95 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH--PQQHRLLFEVFDE 95 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC--TTTCEEEEEEEEC
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec--CCCCEEEEEEEEC
Confidence 358899999999999743 456778998888742 3678999999999999999998765 4468999999999
Q ss_pred CccCCcc-cceEEEEEeeEEeeccc------ccceeecCCCC-CCCCcceEEEEEec
Q 000133 2050 SKMGKSS-FGKVTIQIDRVVMLGAV------AGEYTLLPESK-SGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2050 ~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~ 2098 (2100)
+.||++. +|++.|++.++...+.- ...|.|.+.++ +...=.+.|++.|.
T Consensus 96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9998765 59999999999876542 47899977632 22223456777764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-06 Score=116.35 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=152.4
Q ss_pred CchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhccCCCCccc
Q 000133 54 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLL-GLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 132 (2100)
Q Consensus 54 g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~ 132 (2100)
..+.|++..|+++++..|.+|+.+|.+++.++..+..+...|++++++ .+|.+++.++|.+|+++|+||+... .+.-
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~--g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE--EADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS--CHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc--CchH
Confidence 356778899999999999999999999999888888888889988765 5688899999999999999999732 2222
Q ss_pred ccchhccCChHHHHHHhhccC-----------CCcc-------hHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH
Q 000133 133 SKIFSTEGVVPVLWEQLKNGL-----------KSGN-------VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL 194 (2100)
Q Consensus 133 ~~~~~~~g~vp~L~~lL~~~~-----------~~~~-------~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL 194 (2100)
...+...|++|+|..++.... .... .+...++.+|++||...+.....+...++++.|+.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 455788999999999986421 0000 1334567889999977767667788899999999998
Q ss_pred ccC---CHHHHHHHHHHHHHHhhcCcchhhHHhhhch---HHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 000133 195 TLG---QSSTQAHVCFLLACMMEEDVSVCSRVLAADA---TKQLLKLLGSGNEASVRAEAAGALKSLS 256 (2100)
Q Consensus 195 ~s~---~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls 256 (2100)
.+. ..+++..|+.+|..++.++......+.+.+. ...++.+... .+ ..+..++++|+|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SC-TTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-Cc-HHHHHHHHHHHhHh
Confidence 653 3579999999999999888777777766553 3344443333 32 36788999999975
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-09 Score=109.84 Aligned_cols=114 Identities=25% Similarity=0.423 Sum_probs=88.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+++ ...+|+|++++.||+|+|.|.|.+.. .++.|.|+|+|++.+|++
T Consensus 12 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~i~V~d~d~~~~~ 88 (133)
T 2ep6_A 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDEDGDKPP 88 (133)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEEETTEEE
T ss_pred ceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-EEEEeeeecCCCCCccccEEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 48899999999999743 45677899999976 57899999999999999999988863 368999999999999754
Q ss_pred -ccceEEEEEeeEEeecccccceeecCCCC----CCCCcceEEEEEe
Q 000133 2056 -SFGKVTIQIDRVVMLGAVAGEYTLLPESK----SGPSRNLEIEFLW 2097 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 2097 (2100)
.+|++.|.+..+.. |. ...|.|.+.++ .|..+ |+++|.|
T Consensus 89 ~~lG~~~i~l~~l~~-~~-~~w~~L~~~~~~~~~~G~i~-l~i~~~~ 132 (133)
T 2ep6_A 89 DFLGKVAIPLLSIRD-GQ-PNCYVLKNKDLEQAFKGVIY-LEMDLIY 132 (133)
T ss_dssp EECCBCEEEGGGCCS-SC-CEECCCBCSCTTSCCSSEEE-EEEEEEE
T ss_pred CeeEEEEEEHHHccC-CC-ceEEEeecCCCCCccceEEE-EEEEEEe
Confidence 56999999999743 43 46788865432 23333 5555555
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=113.02 Aligned_cols=120 Identities=17% Similarity=0.367 Sum_probs=88.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++.. ..|.+.-|+.+.+++. ...+|+|++++.||.|+|.|.|.+. +..+.|.|+|++++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~L~~~V~d~d 84 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL--PQRHRILFEVFDEN 84 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC--TTTCEEEEEEEECC
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEc--CCCCEEEEEEEECC
Confidence 4889999999999964 3566788999998853 3468999999999999999986654 66789999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeeccc-c-----cceeecCCCCCCC-CcceEEEEEecC
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAV-A-----GEYTLLPESKSGP-SRNLEIEFLWSN 2099 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~-~~~~~~~~~~~~ 2099 (2100)
.||++. +|+|+|++..+...+.. . ..|.|.+.+++++ .=.|.+.+.|.+
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEe
Confidence 998754 69999999999886544 2 5788976533332 335668887754
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-09 Score=109.12 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=85.2
Q ss_pred CCCceeeeeccchhhhhhCC-CcceEEEecC----CCCCccccccccCCCccccccceec-cccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGN-PSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWS-FEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|.+..++....++ +.-|+++.+. ....++|+|++++.||+|+|.|.|. +.... .+..|.|+|++++
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 68899999999999865444 5678877763 2456799999999999999999987 55322 5679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeecCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
.||++ .+|+++|+++.+...+...+-|.|.+.
T Consensus 99 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 99 SLRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred CCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 99876 569999999999777777888888665
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-09 Score=111.34 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.9
Q ss_pred cCCCceeeeeccchhhh--hhCC-----------CcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEE
Q 000133 1977 LPGTLVVIIKRGNNMKQ--SVGN-----------PSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLH 2043 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2043 (2100)
+.|.|.|+|.+..+++. ..|. +.-++.+.+++.+..+|++++++.||+|||.|+|.+..+ +.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 35889999999999863 2222 668999999776667899999999999999999998643 8999
Q ss_pred EEeecCCccCCc-ccceEEEEEeeEEeec--ccccceeecCCCCCCCCcceEEEEEec
Q 000133 2044 ISCKNKSKMGKS-SFGKVTIQIDRVVMLG--AVAGEYTLLPESKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2044 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2098 (2100)
++|++++.||++ .+|++.|++.++...+ .+..-|.|.+ .|..+ +.+.|.
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~---~G~i~---l~l~~~ 132 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP---EGKVY---VIIDLS 132 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS---SCEEE---EEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC---CeEEE---EEEEEE
Confidence 999999999976 5699999999987643 3466677755 55544 555554
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-08 Score=106.38 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=85.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|.+.-|+++.+. ....++|+|++++.||+|+|.|.|..-.+ ...+.|+|+|+++
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 47899999999999753 4556788888883 45678999999999999999999984312 2457999999999
Q ss_pred CccCC---cccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGK---SSFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.||+ +.+|+++|++.++...+ ...-|.|.+..
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred CCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 99994 67799999999987765 78889997663
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=106.47 Aligned_cols=102 Identities=16% Similarity=0.380 Sum_probs=85.2
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc---
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM--- 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 2052 (2100)
.|.|.|+|++..++.. ..|.+.-|+.+.+|+ ..++|++++++.||.|+|.|.|.+.. .++.|+|+|++++.+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK-TKKRTKTIYGNLNPVWEENFHFECHN--SSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCCSCSSCEEEEEEEEEECS--TTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC-EEEECCccCCCCCCCcccEEEEEecC--CCCEEEEEEEECCCCccc
Confidence 6899999999999965 467788999999965 67899999999999999999887763 358999999999987
Q ss_pred --------CCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2053 --------GKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2053 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++ .+|++.|++..+ .+.....|.|.+.++
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~ 131 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTD 131 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSST
T ss_pred cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCC
Confidence 555 459999999998 456677899986643
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-08 Score=109.79 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=85.9
Q ss_pred CCCceeeeeccchhhhh---------hCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCC-CCCeEEEE
Q 000133 1978 PGTLVVIIKRGNNMKQS---------VGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHIS 2045 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 2045 (2100)
.|.|.|+|++..++... +|.+.-|+++.+++ ...++|+|++++.||+|+|.|.|.+..+. ....|+|+
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~ 104 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT 104 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence 57899999999999864 45577888888873 45789999999999999999998764221 34699999
Q ss_pred eecCCccCCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2046 CKNKSKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2046 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
|++++.||++ .+|++.|+++.+...+....-|.|.+.++
T Consensus 105 V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 144 (147)
T 2enp_A 105 VVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP 144 (147)
T ss_dssp EECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred EEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence 9999999876 46999999999876666666778876643
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.5e-09 Score=111.10 Aligned_cols=114 Identities=19% Similarity=0.351 Sum_probs=90.8
Q ss_pred CCCceeeeeccchhhhhh-CCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQSV-GNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++...- |.+.-|+++.+. ....++|+|++++.||+|+|.|.|.+......+.|.|+|++++.|
T Consensus 26 ~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 105 (153)
T 3fbk_A 26 DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105 (153)
T ss_dssp SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCC
Confidence 478999999999987543 556678877773 335678999999999999999999986555667899999999999
Q ss_pred CC--cccceEEEEEeeEEe-ecccccceeecCCCCCCCCcceE
Q 000133 2053 GK--SSFGKVTIQIDRVVM-LGAVAGEYTLLPESKSGPSRNLE 2092 (2100)
Q Consensus 2053 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2092 (2100)
|+ +.+|+++|+++.+.. ...+.+-|.|.+.. .|..+++.
T Consensus 106 ~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~-~g~~~~lk 147 (153)
T 3fbk_A 106 SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH-LGRTKHLK 147 (153)
T ss_dssp GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT-GGGTCCCB
T ss_pred CCCCcEEEEEEEEHHHhcCCCCccccEEECCChh-hcccccce
Confidence 76 567999999999875 68888999997764 45555444
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-09 Score=108.39 Aligned_cols=117 Identities=19% Similarity=0.400 Sum_probs=91.9
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
.|.|+|+|.+..++... .|...-|+.+.+++. .++|++++ ++.||+|+|.|.|.+.. ..+.|+|+|+|++.||+
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~~~ 85 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVGTE 85 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSCTT
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCCCC
Confidence 48899999999998753 466778999999764 67899998 89999999999998873 67899999999999986
Q ss_pred c-ccceEEEEEeeEEeecc-cccceeecCCCCCCCCcceEEEEEecC
Q 000133 2055 S-SFGKVTIQIDRVVMLGA-VAGEYTLLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2055 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
+ .+|+++|++..+...|. ....|.|...++ ..=.+.+.+.|.+
T Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~G~i~l~l~~~p 130 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE--YKGEIWVALSFKP 130 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEEETTE--EEEEEEEEEEEEE
T ss_pred CceEEEEEEEHHHhccCCCCCcEEEEeecCCc--cCEEEEEEEEEEe
Confidence 5 55999999999866654 345688863221 1223557777754
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.2e-09 Score=112.31 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=89.1
Q ss_pred cCCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCC
Q 000133 1977 LPGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKS 2050 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2100)
-+|.|.|+|++..++... .|.+.-|+.+.+++ ...++|+|++++.||+|+|.|.|.+..+...+.|+|+|+|++
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 108 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence 368899999999999643 56677899888875 567889999999999999999998864445679999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceeecCCCCCCCCc
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSR 2089 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2089 (2100)
.||++. +|+++|.+.++... ...+-|.|.+. ++|+..
T Consensus 109 ~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~-~~g~~~ 146 (149)
T 1a25_A 109 LTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ-EEGEYF 146 (149)
T ss_dssp SSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH-HHHTTC
T ss_pred CCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC-CCCccc
Confidence 998765 59999999987654 46677888554 244443
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=107.59 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=86.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC---CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP---KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .|.+.-|+++.++ +...++|+|++++.||+|+|.|.|..- |+ ..+.|.|+|++++
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF-PYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSC-CHHHHTTSEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECcc-CHHHcccCEEEEEEEECC
Confidence 58899999999999754 4556788888885 345778999999999999999988742 22 4679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.||++ .+|++.|+++.+...+....-|.|.+.+
T Consensus 104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp SSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 99875 4599999999998777778889998773
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-06 Score=112.64 Aligned_cols=294 Identities=15% Similarity=0.051 Sum_probs=213.6
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC---CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHH
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG---LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 488 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~ 488 (2100)
.....+..|+.+|+.+-..+.+ +++..|-..|. +.++.++..|+.+|+.+..+... .++..
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~l 433 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDY 433 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHH
T ss_pred cchHHHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHH
Confidence 3445677788888887776543 57888888887 66788899999999999765432 14667
Q ss_pred HHHhccCCC--------HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHH-hcCCCC
Q 000133 489 LVQILESGS--------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL-IHKSDT 559 (2100)
Q Consensus 489 Lv~lL~~~~--------~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L-~~~~~~ 559 (2100)
|...|.+.+ +.+|..|+.+|+-....+.. +.+++.|..++.+.+..+.+.|+.+|+.+ ...++.
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 777776554 67888999999987643221 12567888888887777778888899876 555667
Q ss_pred CcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh
Q 000133 560 ATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRK 637 (2100)
Q Consensus 560 ~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-s~~~~~~~~Aa~aL~~L~~~~~ 637 (2100)
.++..|+..+. +.+..++..+..+||-+. ..+..+++.+++.|. +.++.+|+.++.+++--..+..
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC
Confidence 78888888754 456667888888888442 223345888888765 6789999999888764443322
Q ss_pred hhHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH-HhCCCCHHHHHHHHHHHH
Q 000133 638 DLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV-LAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 638 ~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~-ll~~~~~evr~~aa~aL~ 715 (2100)
+. .+|..|+..+ .+.+..+++.|+.+|+-+..+.+ ..++.++. ++.+.++.+|..++.||+
T Consensus 575 n~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 575 NN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp CH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11 2455555554 56678899999999998866542 45677776 556789999999999999
Q ss_pred HHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCc
Q 000133 716 NLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 716 ~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
.+..+++. ..++..|.+++.+.+..+|.+|+-+|..+.....
T Consensus 638 li~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 638 IACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 99866543 2467888888988899999999999999886544
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-08 Score=105.03 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC---CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCccC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2053 (2100)
.|.|+|+|.+..+ +...|.+.-|+++.++. ...++|||++++.||+|+|.|.|.+..+. .+..|.++|++++.||
T Consensus 25 ~~~L~V~v~~a~~-~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~ 103 (138)
T 1wfm_A 25 KAELFVTRLEAVT-SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103 (138)
T ss_dssp TTEEEEEEEEEEC-CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC
T ss_pred CCEEEEEEEEEEc-CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC
Confidence 4789999999985 34556677888888852 23578999999999999999999876332 2569999999999998
Q ss_pred Ccc-cceEEEEEeeEEeecccccceeecCCCC
Q 000133 2054 KSS-FGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
++. +|++.|++..+-.......-|.|.+..|
T Consensus 104 ~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 104 RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred CCcEEEEEEEEcccccCcccccceeeCcCCCc
Confidence 765 5999999999865666777888877654
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-09 Score=112.75 Aligned_cols=105 Identities=24% Similarity=0.425 Sum_probs=88.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCCCCeEEEEee-cC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCK-NK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 2049 (2100)
.|.|+|+|++..++... .|...-|+++.+++.. .++|+|++++.||+|+|.|.|.+ ++..+.|+|+|+ ++
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v--~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE--SPQGKVLQVIVWGDY 106 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS--CCTTEEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe--cCCCCEEEEEEEEcC
Confidence 58899999999999864 4667789988887543 77899999999999999998876 466789999999 99
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
+.||++ .+|++.|.++.+.....+.+-|.|.+.++
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSS 142 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGG
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccc
Confidence 999875 66999999999987777888899977754
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-08 Score=106.46 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++.. ..|.+.-|+.+.++ +...++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++.|
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 112 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence 4789999999999864 35667788888884 445788999999999999999998875332 457999999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
|++. +|+++|+++.+-.......-|.|.+
T Consensus 113 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 8755 6999999999866666677777754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-08 Score=108.30 Aligned_cols=106 Identities=21% Similarity=0.375 Sum_probs=86.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCC-------------CccccccccCCCccccccceec-cccC-CCCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTP-------------PRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQ 2040 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 2040 (2100)
.|.|+|+|++..++... .|.+.-|+++.+++.+ .++|+|++++.||+|+|.|.|. +... +..+
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 58899999999999753 5667789999998653 4789999999999999999986 4321 2577
Q ss_pred eEEEEeecCCccCCcc-cceEEEEEeeEEeecccccceeecCCC
Q 000133 2041 KLHISCKNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2041 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
.|+|+|++++.||++. +|++.|++..+...+....-|.|.+.+
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 9999999999998665 599999999987767777888886543
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-08 Score=102.98 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecCC-CCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN-TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK- 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2054 (2100)
..|.|+|++..++.. ..|.+.-|+.+.++. +...+|+|++++.||+|+|.|.|.+.. ++.|+|+|++++.||+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK---TDSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEET---TCCEEEEEEEGGGTTSS
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCC---CCEEEEEEEECCCCCCC
Confidence 468999999999953 456677899998864 678899999999999999999998863 3569999999999996
Q ss_pred ---cccceEEEEEeeEEeecc-cccceeecCCCCCCC---CcceEEEEEe
Q 000133 2055 ---SSFGKVTIQIDRVVMLGA-VAGEYTLLPESKSGP---SRNLEIEFLW 2097 (2100)
Q Consensus 2055 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~ 2097 (2100)
+.+|+++|+++.+-..+. -...|.|...+++++ .=.|.|+|.|
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 678999999887633221 124577755422221 2245666654
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-08 Score=105.51 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=82.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|+|+|++..++... .|.+.-|+++.++ +...++|+|++++.||+|+|.|.|.+..+. .++.|+|+|++++.|
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 120 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 120 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence 58899999999999653 4567788888885 346778999999999999999999765221 468999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceeec
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
+++ .+|++.|.+..+........-|.|.
T Consensus 121 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 121 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp SCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 865 4599999999886554556667664
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=104.24 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=76.9
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC----CCCCccccccccCCCccccccceeccccC--CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIP--PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2049 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+. ....++|+|++++.||+|+|.|.|....+ ..++.|+|+|+++
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 47899999999999753 3446788888773 34677899999999999999999885322 2567999999999
Q ss_pred CccC---CcccceEEEEEeeEEeecccccceee
Q 000133 2050 SKMG---KSSFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2050 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
+.+| .+.+|++.|+++++...+ ..+-|.|
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9998 466799999999987765 5566655
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=106.97 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=86.6
Q ss_pred CCCceeeeeccchhhhh---hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS---VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|++..++... .|.+.-|+++.++..+ .++|+|++++.||+|+|.|.|.+..+. .+..|.|+|+++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 47899999999999742 4557788888887433 568999999999999999998865332 355899999999
Q ss_pred CccCCc-ccceEEEEEeeEEeecccccceeecCCC
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLGAVAGEYTLLPES 2083 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2083 (2100)
+.||++ .+|++.|+++.+...+....-|.|.+.+
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred CCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 999875 4699999999998777888899998873
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.4e-08 Score=103.46 Aligned_cols=106 Identities=22% Similarity=0.360 Sum_probs=85.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .| +.-|+++.+.. ...++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 101 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSG 101 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECC
Confidence 57899999999999743 56 77888887752 25678999999999999999999864211 3459999999999
Q ss_pred ccCC---cccceEEEEEeeEEeecccccceeecCCCC
Q 000133 2051 KMGK---SSFGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2051 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
.||+ +.+|++.|++..+.....+..-|.|.+.++
T Consensus 102 ~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 102 GFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp CSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred CccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 9984 478999999999877777888899977654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=122.07 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=145.9
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH-HhccCCCHHHHHHHHHHHHHHhcC-ChhhH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV-QILESGSAKAKEDSASILRNLCNH-SEDIR 519 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~vre~A~~aL~~L~~~-~~~~~ 519 (2100)
..|.++++.|+++++..|..|+++|+||+. ++..+..+...++|.+++ .+|.+++.++|+.|+++|.||+.+ .++.+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345667788999999999999999999995 788899999999998765 578889999999999999999964 46788
Q ss_pred HHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHH
Q 000133 520 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 599 (2100)
Q Consensus 520 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 599 (2100)
..+.+.|++++|..+++..... +..+...... ....-..++ +++..+++.+|.+++... .+ ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~--------~~~~~~~~~~-~~~~~~~~~----~~~~~~~l~lL~~L~e~s--~~-~~~ 176 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLET--------LTTSEPPFSK-LLKAQQRLV----WDITGSLLVLIGLLALAR--DE-IHE 176 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHH--------HHCBTTBGGG-SCHHHHHHH----HHHHHHHHHHHHHHHHHC--HH-HHH
T ss_pred HHHHHcChHHHHHHHHHhhHHH--------Hhhhcccccc-ccHHHHHHH----HHHHHHHHHHHHHHHhCC--HH-HHH
Confidence 8899999999999998752111 1100000000 000000000 011122333333333221 11 233
Q ss_pred hhhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHH---HHHhhcCCCHHHHHHHHHHHHH
Q 000133 600 GSAANDAVETMIKILSS---TKEETQAKSASALAGIFETRKDLRESSIAVKTLWS---VMKLLDVGSECILVEASRCLAA 673 (2100)
Q Consensus 600 ~i~~~~~i~~Lv~lL~s---~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~---Lv~lL~~~~~~v~~~aa~aL~~ 673 (2100)
.+...++++.|+.+|.+ ...+++..|+.+|..++.++++..+.+...+.... +..+..+.+ ..+..+++.+.|
T Consensus 177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~N 255 (684)
T 4gmo_A 177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHN 255 (684)
T ss_dssp HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHh
Confidence 45567889999998743 35789999999999999999988888888764333 222223333 356778888888
Q ss_pred Hh
Q 000133 674 IF 675 (2100)
Q Consensus 674 L~ 675 (2100)
+.
T Consensus 256 i~ 257 (684)
T 4gmo_A 256 VF 257 (684)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-08 Score=100.83 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.5
Q ss_pred CCCceeeeeccchhhhhh---CCCcceEEEecCC--CCCccccccccCCCccccccceec-cccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQSV---GNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWS-FEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++...- |.+.-|+++.+++ ...++|+|++++.||+|+|.|.|. +.... ....|+|+|++++
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 478999999999997542 4466888888863 467789999999999999999984 44222 4569999999999
Q ss_pred ccCCc-ccceEEEEEeeEEe-ecccccceeecCCCCCC
Q 000133 2051 KMGKS-SFGKVTIQIDRVVM-LGAVAGEYTLLPESKSG 2086 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2086 (2100)
.||++ .+|++.|++..+.. .|...-.|.|.+...+|
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~sG 138 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSSG 138 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSSCC
T ss_pred CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCCCC
Confidence 99876 56999999999876 35555567776654444
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-08 Score=105.85 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=82.5
Q ss_pred hcCCCceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccC
Q 000133 1976 CLPGTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2053 (2100)
+-.|.|.|+|++..++. ...|.+.-|+.+.+++ ..++|+|++++.||+|+|.|.|.++ | .+.|.|+|+|++.||
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-~~~kT~v~~~tlnP~Wne~f~f~v~--~-~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVT--P-VSKLHFRVWSHQTLK 108 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEEC--T-TCEEEEEEEECCSSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-EEeEccccCCCCCCeECCEEEEEeC--C-CCEEEEEEEECCCCC
Confidence 44678999999999996 3455577899999976 8889999999999999999999874 3 889999999999998
Q ss_pred Cc-ccceEEEEEeeEEee--cc---cccceeecCC
Q 000133 2054 KS-SFGKVTIQIDRVVML--GA---VAGEYTLLPE 2082 (2100)
Q Consensus 2054 ~~-~~~~~~~~~~~~~~~--~~---~~~~~~~~~~ 2082 (2100)
++ .+|++.|.+..+... +. ..-.|.|...
T Consensus 109 ~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~ 143 (173)
T 2nq3_A 109 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD 143 (173)
T ss_dssp CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred CCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence 77 569999999988642 11 1235666554
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-08 Score=105.59 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC-----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT-----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2049 (2100)
.|.|+|+|.+..++... .|.+.-|+++.++.. ..++|||++++.||+|||.|.|.+..+. ....|+|+|+++
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 47899999999999764 455678888888652 2579999999999999999999865321 356899999999
Q ss_pred CccCCccc-ceEEEEEeeEEe-ecccccceeec
Q 000133 2050 SKMGKSSF-GKVTIQIDRVVM-LGAVAGEYTLL 2080 (2100)
Q Consensus 2050 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 2080 (2100)
+.||++.+ |++.|.+..+.. ......-|.|.
T Consensus 122 d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 122 DRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp CTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 99987664 999999988742 23334445553
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.9e-08 Score=102.61 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCC----CCCccccccccCCCccccccceec-cccC-CCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGN----TPPRQTKIVSTGPNPEWEESFAWS-FEIP-PKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 2049 (2100)
.|.|.|+|++..++... .|.+.-|+++.+++ ...++|+|++++.||+|+|.|.|. +... +....|+|+|+++
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 107 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence 57899999999999754 45577899888875 357789999999999999999886 4321 1246999999999
Q ss_pred CccCCc-ccceEEEEEeeEEeec
Q 000133 2050 SKMGKS-SFGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2050 ~~~~~~-~~~~~~~~~~~~~~~~ 2071 (2100)
+.||++ .+|++.|++..+...+
T Consensus 108 d~~~~d~~iG~~~i~l~~l~~~~ 130 (142)
T 2chd_A 108 DKFGHNEFIGETRFSLKKLKANQ 130 (142)
T ss_dssp CTTSCEEEEEEEEEEGGGCCTTC
T ss_pred CCCCCCcEEEEEEEEHHHcCCCC
Confidence 999875 5699999999875433
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-07 Score=97.57 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=68.2
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
|.|+|+|.+..++. ..|.+.-++.++ +..++|++++ ++.||+|||.|.|.+. +....|+|+|+|++ |+++ .
T Consensus 5 ~~L~V~V~~A~~l~-~~g~~DPYv~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~--~~~~~L~~~V~D~d-~~~dd~ 77 (131)
T 2cjt_A 5 SLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVKSTTIAVRGSQPSWEQDFMFEIN--RLDLGLTVEVWNKG-LIWDTM 77 (131)
T ss_dssp EEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEEEC--CCSSEEEEEEEECC-SSCEEE
T ss_pred eEEEEEEEEeECCC-CCCCcCeEEEEE---ecCEEEeEecCCCCCceECCEEEEEEe--CCCCeEEEEEEECC-CCCCCe
Confidence 67999999998774 356667888888 3345566665 7999999999999876 34568999999999 7665 5
Q ss_pred cceEEEEEeeEEeec
Q 000133 2057 FGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~ 2071 (2100)
+|+++|.+..+...+
T Consensus 78 iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 78 VGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhhhcC
Confidence 599999999987665
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=108.26 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=211.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcc-cHHHHHhcC
Q 000133 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD-SKWAITAAG 484 (2100)
Q Consensus 406 v~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~-~~~~i~~~g 484 (2100)
+.-+...+..-+..++..+.++..+..... ....+.+..|.+.+.+.+.. +.|+.++..|+..... ...+.+--+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 20 FQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 333443334445677778888766532211 11125678888888877655 8899999999853321 112333336
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC----
Q 000133 485 GIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD---- 558 (2100)
Q Consensus 485 ~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~aL~~L~~~~~---- 558 (2100)
.+|.++..+.+....+|+.|..++..+... ++..- ..++|.|+..|++. .|..|..|..++..|+....
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 789999999999999999888777777643 23332 23689999999875 69999999999999987542
Q ss_pred ---CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 559 ---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 559 ---~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
++.+|.+...+.|..++++..+..++-.++.+.++.|+ . .-+|.|++.+.++++ +. .+...|....+.
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~------~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv 241 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E------RFIPSLIQCIADPTE-VP-ETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G------GGHHHHHHHHHCTTH-HH-HHHHHHTTCCCC
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h------hhHHHHHHHhcChhh-hH-HHHHHhhcCeeE
Confidence 36788888899999999999999999999998887772 2 239999999998855 32 334444443333
Q ss_pred ChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHH
Q 000133 636 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCAL 714 (2100)
Q Consensus 636 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~-~~~~evr~~aa~aL 714 (2100)
. ..+.+..+-.+|.|.+.|..++..++++++-++.|||.-..+.......-...+|.|.+... ..+||+|+.+..|+
T Consensus 242 ~--~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 242 A--EVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp S--CCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred e--eecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 1 22334445579999999999999999999999999998877777775555667777776554 48999999999999
Q ss_pred HHHh
Q 000133 715 ANLI 718 (2100)
Q Consensus 715 ~~L~ 718 (2100)
..|.
T Consensus 320 ~~l~ 323 (986)
T 2iw3_A 320 KTLR 323 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-07 Score=100.51 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=79.7
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++... .|.+.-|+++.+++. ..++|+|++++.||+|+|.|.|.+..+. .+..|.|+|++++
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 57899999999999653 566778999888753 6788999999999999999998875322 3679999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceeec
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTLL 2080 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2080 (2100)
.||++ .+|++.|.++.+ ...+..-|.|.
T Consensus 116 ~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~ 144 (166)
T 2cm5_A 116 IGKSNDYIGGCQLGISAK--GERLKHWYECL 144 (166)
T ss_dssp SSSCCEEEEEEEEETTCC--HHHHHHHHHHH
T ss_pred CCCCCcEEEeEEEecccC--CchhHHHHHHH
Confidence 99875 569999999874 22344445553
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-07 Score=106.59 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccC-CCCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2052 (2100)
.|.|.|+|.+..++.. ..|.+.-++.+.+++ +..++|+|++++.||+|+|.|.|.+..+ ..++.|.|+|++++.|
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 5889999999999974 345577899888874 4567899999999999999999986533 2468999999999999
Q ss_pred CCc-ccceEEEEEeeEEeecccccceeecCCCCC--CCCcceEEEEEe
Q 000133 2053 GKS-SFGKVTIQIDRVVMLGAVAGEYTLLPESKS--GPSRNLEIEFLW 2097 (2100)
Q Consensus 2053 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 2097 (2100)
|++ .+|++.|++..+...+.+..-|.|.+.++. ...-.+.+.+.|
T Consensus 98 ~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~ 145 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY 145 (284)
T ss_dssp SCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEE
T ss_pred CCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEe
Confidence 864 559999999999887778888999765432 122234455554
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.6e-07 Score=99.49 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
+|.|.|+|++..++... .|.+.-|+++.+++.. .++|+|++++.||+|+|.|.|.+..+.. +..|+|+|+|++
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 58899999999999753 4567789988886433 5689999999999999999998764332 468999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.||++. +|++.|++.. ....+..-|.|..
T Consensus 109 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 109 RGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp TTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 998665 5999999987 4445666676644
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-07 Score=114.18 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCCceeeeeccchhhhh-hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC-c
Q 000133 1978 PGTLVVIIKRGNNMKQS-VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK-S 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2055 (2100)
+|.|.|+|++..+++.. .|.+.-++++.+|+ ...+|||++++.||+|+|.|.|.+...+.++.|.|+|+|++.+++ +
T Consensus 393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~-~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD 471 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFGG-QEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD 471 (540)
T ss_dssp EEEEEEEEEEEESCCCSSCSCCCEEEEEEETT-EEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred ccEEEEEEEEccCCCcccCCCcCeEEEEEECC-EeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 47899999999998764 34566888999985 468999999999999999999986545678999999999999988 6
Q ss_pred ccceEEEEEeeEEeecccccceee
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.+|+|++.+. .|.....+.|
T Consensus 472 ~LG~~~~~L~----~g~~~~~~~l 491 (540)
T 3nsj_A 472 LLGSCDRSPH----SGFHEVTCEL 491 (540)
T ss_dssp EEEEEEECCC----SEEEEEEEEC
T ss_pred EEEEEEEEee----CCcEEEEEEc
Confidence 7799999987 4666666666
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-07 Score=96.51 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=77.7
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.. ..|.+.-|+++.+++. ..++|+|++++.||+|+|.|.|.+..+. .+..|+|+|++++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 3789999999999975 3455778998888754 3667999999999999999998865333 2368999999999
Q ss_pred ccCCc-ccceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKS-SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.||++ .+|++.|+++. ....+..-|.|
T Consensus 95 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l 122 (138)
T 3n5a_A 95 KLSRNDVIGKIYLSWKS--GPGEVKHWKDM 122 (138)
T ss_dssp SSSCCEEEEEEEESSSS--CHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEcccc--CChHHHHHHHH
Confidence 99876 45999999986 23334444555
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.1e-07 Score=97.30 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCCc-c
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-S 2056 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 2056 (2100)
|.|.|+|.+..++. ..|...-++.++ +..++|++++ ++.||+|||.|.|.+.. ....|+|+|+|++ |+++ .
T Consensus 14 ~~L~V~V~~A~~l~-~~g~~DPYV~v~---~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~dd~ 86 (167)
T 2cjs_A 14 SLLCVGVKKAKFDG-AQEKFNTYVTLK---VQNVESTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIWDTM 86 (167)
T ss_dssp CEEEEEEEEEECSS-CGGGCEEEEEEE---ETTEEEECCCEESSSCEEEEEEEEECCC--TTSEEEEEEEECC-SSCCEE
T ss_pred EEEEEEEEEEECCC-CCCCCCeEEEEE---ecceEEEEecCCCCCCCCCCEEEEEeeC--CCCEEEEEEEECC-CCCCce
Confidence 68999999998774 456667888888 3345677775 69999999999998873 4568999999999 7655 5
Q ss_pred cceEEEEEeeEEeec
Q 000133 2057 FGKVTIQIDRVVMLG 2071 (2100)
Q Consensus 2057 ~~~~~~~~~~~~~~~ 2071 (2100)
+|+++|.+..+...+
T Consensus 87 iG~~~i~L~~l~~~~ 101 (167)
T 2cjs_A 87 VGTVWIPLRTIRQSN 101 (167)
T ss_dssp EEEEEEEGGGSCBCS
T ss_pred EEEEEEEHHHhcccC
Confidence 699999999987655
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0058 Score=86.12 Aligned_cols=341 Identities=8% Similarity=0.027 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHH
Q 000133 457 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-----SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 531 (2100)
Q Consensus 457 ~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 531 (2100)
.++..++.+|..+....++.- ...-...++..++++. ..++.++..++..+..++.. +..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVF-GPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHH
Confidence 356667777777664333211 1111123444444443 33678888888888888753 3333222111233333
Q ss_pred H-----HHhh-----------------------cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH----hh------cCC
Q 000133 532 L-----WLLK-----------------------NGSANGKEIAAKTLNHLIHKSDTATISQLTAL----LT------SDL 573 (2100)
Q Consensus 532 v-----~lL~-----------------------~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l----L~------~~~ 573 (2100)
+ ..+. +.....+..|...|..++..-....++.++.. +. +.+
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh
Confidence 3 2221 01124567788888888876544455555544 44 456
Q ss_pred cchHHHHHHHHHHHHhccC-chhHHHHhhhccchHH----HHHHHhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 574 PESKVYVLDALKSMLSVVS-FSDILREGSAANDAVE----TMIKILSST---KEETQAKSASALAGIFETRKDLRESSIA 645 (2100)
Q Consensus 574 ~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~~~i~----~Lv~lL~s~---~~~~~~~Aa~aL~~L~~~~~~~~~~~~~ 645 (2100)
+..|+.|..+++.++.... ...............+ .++..+.++ ++.+|..|+|+++.++..-+ .. .-
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~-~l 494 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA-QL 494 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH-HH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HH-HH
Confidence 6788999999998864211 0000000000001122 234445666 89999999999999986421 11 23
Q ss_pred cCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-------h--hHHHHHHhCCChHHHHHHhCCCC---HH--HHHHHH
Q 000133 646 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR-------E--NREVAAVARDALSPLVVLAGSPV---LE--VAEQAT 711 (2100)
Q Consensus 646 ~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~-------~--~~~~~~~~~~~l~~Lv~ll~~~~---~e--vr~~aa 711 (2100)
..+++.++..+.+.+..++..|+.++.+++.... + .......-...++.|..++.... +. ..+.+.
T Consensus 495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~ 574 (960)
T 1wa5_C 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (960)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHH
Confidence 3468888888888889999999999999976311 1 11110001123444445555531 11 336677
Q ss_pred HHHHHHhcC-cHHHHHHHHcCcHHHHHHHHcc----CCh-hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhh
Q 000133 712 CALANLILD-SEVSEKAIAEEIILPATRVLCE----GTI-SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFL 785 (2100)
Q Consensus 712 ~aL~~L~~~-~~~~~~~v~~~~v~~L~~ll~~----~~~-~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l 785 (2100)
.+|..++.. .+.... ....+++.|...+.. .++ ..+.....++..+...... ..+.. .....++.+...+
T Consensus 575 ~al~~vv~~~~~~~~p-~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~~~~~--~~~~~~p~~~~iL 650 (960)
T 1wa5_C 575 RSIFRVLQTSEDSIQP-LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-QNLPL--LVDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHTTTTGG-GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-GGHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-chHHH--HHHHHHHHHHHHH
Confidence 778777521 111111 122344455444433 333 3566677788777765221 11222 2244556566666
Q ss_pred hhcccccchHhHHHHHHHHHHcC
Q 000133 786 ESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 786 ~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
.....+.. +.++.++..+++..
T Consensus 651 ~~~~~~~~-~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 651 SEDIQEFI-PYVFQIIAFVVEQS 672 (960)
T ss_dssp HTTCTTTH-HHHHHHHHHHHHHC
T ss_pred HhhhHhhH-HHHHHHHHHHHHhc
Confidence 54445555 77888888887665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.005 Score=86.83 Aligned_cols=333 Identities=10% Similarity=0.083 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-----CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 415 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-----LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 415 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-----s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
.++.+++.+|..+....++.-.... ...++..+.++. ...+.+...+...+..++. .+..+..+...+.++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHH
Confidence 5678888888887765433111111 123444455553 3456778888888888764 22221111001123333
Q ss_pred H-----Hhcc-----------------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh-----
Q 000133 490 V-----QILE-----------------------SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK----- 536 (2100)
Q Consensus 490 v-----~lL~-----------------------~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~----- 536 (2100)
+ ..+. +.....|..|...|..++..-+ ..+. ...++.+-+.+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~ 414 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSD 414 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccC
Confidence 3 2221 0112356677778888876432 1111 112344444455
Q ss_pred -cCChhHHHHHHHHHHHHhcCCC----C-C------cHHH-----HHHHhhcC---CcchHHHHHHHHHHHHhccCchhH
Q 000133 537 -NGSANGKEIAAKTLNHLIHKSD----T-A------TISQ-----LTALLTSD---LPESKVYVLDALKSMLSVVSFSDI 596 (2100)
Q Consensus 537 -~~~~~~~~~Aa~aL~~L~~~~~----~-~------~i~~-----L~~lL~~~---~~~~~~~a~~aL~~l~~~~~~~~~ 596 (2100)
+.+|+.++.|..+++.++.... + . .+.+ ++..+.+. ++-+|..+..+++.++.... ++.
T Consensus 415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~ 493 (960)
T 1wa5_C 415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ 493 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH
Confidence 5678899999999999975321 1 1 2322 23345666 77899999999999987642 232
Q ss_pred HHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-------hh-HHH--HHhcCchHHHHHhhcCCC---HH-
Q 000133 597 LREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-------DL-RES--SIAVKTLWSVMKLLDVGS---EC- 662 (2100)
Q Consensus 597 ~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~-------~~-~~~--~~~~g~v~~Lv~lL~~~~---~~- 662 (2100)
. ...++.++..|.+++..++..|+++|.+++.... +. .+. ......++.|..++...+ ..
T Consensus 494 l------~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 494 L------IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred H------HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 2 2237888888888899999999999999987311 10 111 112235666667775531 11
Q ss_pred -HHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh----C-CCCHHHHHHHHHHHHHHhcC-cHHHHHHHHcCcHHH
Q 000133 663 -ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA----G-SPVLEVAEQATCALANLILD-SEVSEKAIAEEIILP 735 (2100)
Q Consensus 663 -v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll----~-~~~~evr~~aa~aL~~L~~~-~~~~~~~v~~~~v~~ 735 (2100)
....+..+|..++....+.-. ..-...++.|...+ + ..++..+.....+++.++.. .+.....+...++|.
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~ 645 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPT 645 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 123444444444321111000 00011223333322 2 24667777888888888743 333344456788899
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHhcC
Q 000133 736 ATRVLCEGTISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 736 L~~ll~~~~~~~~~~Aa~aL~~l~~~~ 762 (2100)
+...+..+..+....+...+..++...
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 999998877777777777777777543
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-07 Score=115.91 Aligned_cols=117 Identities=15% Similarity=0.334 Sum_probs=93.1
Q ss_pred cCCCceeeeeccchhhh--hhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCC
Q 000133 1977 LPGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2054 (2100)
-.|.|+|+|++..++.. ..|.+.-|+.+.+|+ ...+|+|++++.||.|+|.|.|.+. ++.++.|.++|+|++.||+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-~~~~~~l~~~v~d~d~~~~ 462 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-QSYTTRTIQDTLNPKWNFNCQFFIK-DLYQDVLCLTLFDRDQFSP 462 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEES-CTTTCEEEEEEEECCSSSS
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-eeccCCccCCCCCCccCceEEEEec-CCCCCEEEEEEEeCCCCCC
Confidence 35789999999999953 466688899999964 6788999999999999999999886 6677899999999999997
Q ss_pred cc-cceEEEEEeeEEeecc----cccceeecCCCCCCCCcceEEEEEe
Q 000133 2055 SS-FGKVTIQIDRVVMLGA----VAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2055 ~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+. +|+|+|++..+...+. +...|.|.+. ..|... +.+++++
T Consensus 463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-~~G~i~-l~~~l~l 508 (510)
T 3jzy_A 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV-PTGEVW-VRFDLQL 508 (510)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS-SSCEEE-EEEEEEE
T ss_pred CCceEEEEEEHHHhccccCCCCceeeeecCCCC-CCceEE-EEEEEEE
Confidence 65 5999999999876544 5555777543 356544 6666665
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.6e-07 Score=96.05 Aligned_cols=89 Identities=26% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2050 (2100)
.|.|.|+|++..++... .|.+.-|+.+.+++. ..++|+|++++.||+|+|.|.|.+..+- .+..|.|+|+|++
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 103 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence 58899999999999743 455778999888743 3578999999999999999998865322 2458999999999
Q ss_pred ccCCc-ccceEEEEEee
Q 000133 2051 KMGKS-SFGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~ 2066 (2100)
.||++ .+|++.|.++.
T Consensus 104 ~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 104 KIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp SSSCCEEEEEEEEETTC
T ss_pred CCCCCceEEEEEECCCC
Confidence 99865 55999999985
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0014 Score=92.68 Aligned_cols=587 Identities=11% Similarity=0.024 Sum_probs=290.9
Q ss_pred HhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCC
Q 000133 63 LRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGV 141 (2100)
Q Consensus 63 L~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~ 141 (2100)
+.+++.+.|.+|-..|..+-+.+ ++++.+..+|. +.+.++|..|+..|.+.....-. . -..-...+.
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p---------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~-~--l~~~~~~~i 83 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASP---------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWH-E--VPPENREEL 83 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTST---------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGG-G--CCGGGHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHh-h--CCHHHHHHH
Confidence 33455567777777777765444 34556666764 45788899999999986652110 0 000011222
Q ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccC------CHHHHHHHHHHHHHHhh
Q 000133 142 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLG------QSSTQAHVCFLLACMME 214 (2100)
Q Consensus 142 vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~------~~~v~~~a~~~L~~L~~ 214 (2100)
-..+++.+.......+.++..+..++..++... + .|. +.++.++.+++++ ++.....+..+|..+..
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP-----GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc-----HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 233555554432234567877888887776432 2 565 4577889888875 56678888888877763
Q ss_pred c----Ccc-hh----hHHhh--hchHHHHHHHhcCCCC-------HHHHHHHHHHHHHhhc--CChHhHHHHHhCCChHH
Q 000133 215 E----DVS-VC----SRVLA--ADATKQLLKLLGSGNE-------ASVRAEAAGALKSLSD--HCKDARREIAGSNGIPA 274 (2100)
Q Consensus 215 ~----~~~-~~----~~i~~--~g~i~~Lv~lL~~~~~-------~~v~~~Aa~aL~~Ls~--~~~~~~~~i~~~g~i~~ 274 (2100)
. .+. .+ ..+.. ...++.+.+++....+ .+++..+..++..... .-+.. ....-++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 2 111 11 11111 1223333344432111 1577777777765443 12211 11122333
Q ss_pred HHHhhc-----C---CCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcc
Q 000133 275 MINATI-----A---PSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346 (2100)
Q Consensus 275 Lv~ll~-----~---~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~ 346 (2100)
++. +. . .+..+. ....+.+++.++.++..+..... + .+....+.
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~l~~i~~~~~------------~------~~~~~~~~-------- 285 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCM-TADENELAESCLKTMVNIIIQPD------------C------HNYPKTAF-------- 285 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCC-CHHHHHHHHHHHHHHHHHHHCSG------------G------GGCHHHHH--------
T ss_pred HHh-hhhhhcccccccccccc-CcCCcHHHHHHHHHHHHHHcCcc------------c------cccHHHHH--------
Confidence 443 20 0 000000 01235677777777776553210 0 00000000
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC---HHHHHHHHHH
Q 000133 347 KAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT---NEVQEELVRA 423 (2100)
Q Consensus 347 ~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~---~~v~~~A~~a 423 (2100)
.+.+.+..+ .+.+...+...+ .+.....++.
T Consensus 286 -----------~l~~~~~~~-----------------------------------~~~~~~~~~~~d~~~~~~~~~l~~l 319 (971)
T 2x1g_F 286 -----------VLIKMFLDS-----------------------------------LSEITKTEWKRENDNEDIIVHIYML 319 (971)
T ss_dssp -----------HHHHHHHHH-----------------------------------HHHHHHHHSSSSCSCSHHHHHHHHH
T ss_pred -----------HHHHHHHHh-----------------------------------HHHHHHHHhcccccchHHHHHHHHH
Confidence 000000000 000111112223 2455555555
Q ss_pred HHHhhccCccc------------hHHHHhCCcHHHHHHhhCC-----CCHHHHHHHHHHHHHhccCC---------cccH
Q 000133 424 LLKLCNNEGSL------------WRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNEN---------DDSK 477 (2100)
Q Consensus 424 L~~L~~~~~~~------------~~~i~~~g~i~~Lv~lL~s-----~~~~v~~~A~~aL~nLs~~~---------~~~~ 477 (2100)
+..++...... ...+. ..++.|+.+... .++++...++..+..++... ....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 320 FVSSVERHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp HHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 55554332111 01111 234555555533 46677778887777665311 1111
Q ss_pred HHH--HhcCChHHHHHhccCC--------CH-------HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhc---
Q 000133 478 WAI--TAAGGIPPLVQILESG--------SA-------KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN--- 537 (2100)
Q Consensus 478 ~~i--~~~g~i~~Lv~lL~~~--------~~-------~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--- 537 (2100)
..+ .=...++.++..+.-+ ++ ..|..+..+|..++...++. +.. -..+.+-..+.+
T Consensus 398 ~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~ 473 (971)
T 2x1g_F 398 EYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQR 473 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccC
Confidence 111 1112344444444211 11 34556677777776543211 000 012333333433
Q ss_pred --CChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHh---h--cCCcchHHHHHHHHHHHHhccC-chhHHHHhhhccch
Q 000133 538 --GSANGKEIAAKTLNHLIHKSD---TATISQLTALL---T--SDLPESKVYVLDALKSMLSVVS-FSDILREGSAANDA 606 (2100)
Q Consensus 538 --~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL---~--~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~i~~~~~ 606 (2100)
.+|+.++.+..+++.++.... ...++.++.++ . +.++.+|..+..+++.++.... +++... ..
T Consensus 474 ~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~------~v 547 (971)
T 2x1g_F 474 HPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP------PA 547 (971)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH------HH
T ss_pred CCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH------HH
Confidence 578899999999999976433 24566666654 2 3477899999999999887433 222112 23
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREV 684 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~aa~aL~~L~~~~~~~~~~ 684 (2100)
++.|+..| + +.++..|+.++.+++........ ..-...+..|..++.. -+...+..+..+++.++...+.....
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~-p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDCQLQLK-PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 67777777 3 77999999999999975433221 2233456666677765 35678888899999887654322211
Q ss_pred HHHhCCChHHHHH----HhCCC--CHHHHHHHHHHHHHHh---c--Cc-----------HHHHHHHHcCcHHHHHHHHcc
Q 000133 685 AAVARDALSPLVV----LAGSP--VLEVAEQATCALANLI---L--DS-----------EVSEKAIAEEIILPATRVLCE 742 (2100)
Q Consensus 685 ~~~~~~~l~~Lv~----ll~~~--~~evr~~aa~aL~~L~---~--~~-----------~~~~~~v~~~~v~~L~~ll~~ 742 (2100)
.. -...++++++ ++... +++.+.....++..|. . +. ......+...+++.+..++..
T Consensus 624 ~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 11 1223444443 33333 4444444444554442 1 11 011123456788888888875
Q ss_pred C--ChhHHHHHHHHHHHHHhcC
Q 000133 743 G--TISGKTLAAAAIARLLHSR 762 (2100)
Q Consensus 743 ~--~~~~~~~Aa~aL~~l~~~~ 762 (2100)
. +..+.+.+.+++.++....
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhh
Confidence 4 4468888999998877543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.09 E-value=0.011 Score=83.43 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=130.3
Q ss_pred hcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHh---hcCCcchHHHHHHHHHHHHhcc-CchhHHHHhhhccchHH
Q 000133 536 KNGSANGKEIAAKTLNHLIHKSD---TATISQLTALL---TSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVE 608 (2100)
Q Consensus 536 ~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL---~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~i~~~~~i~ 608 (2100)
.+.+|..++.+..+++.++.... ...++.++..+ .++++.++..+..+++.++... .+++. -...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~------l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM------INSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH------HTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH------HHHHHH
Confidence 45678999999999999987543 24566666654 3356778899999999887642 22221 123477
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
.++..|.+ +.++..|+.+|.+++...++... ..-...+..|..++.. -+...+..+..+++.++...+..... -
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~-~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLP-PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL-K 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT-TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH-H
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH-H
Confidence 88887754 78999999999999965332110 1112344555555654 35678888899999987654311111 1
Q ss_pred HhCCChHHHHHHh----CC-CCHHHHHHHHHH---HHHHh--cC---c-H----------------HHHHHHHcCcHHHH
Q 000133 687 VARDALSPLVVLA----GS-PVLEVAEQATCA---LANLI--LD---S-E----------------VSEKAIAEEIILPA 736 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll----~~-~~~evr~~aa~a---L~~L~--~~---~-~----------------~~~~~v~~~~v~~L 736 (2100)
.-...++++.+.+ .. .+++.+...... |+.+. .+ + + .....+...+++.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1123444444433 22 366666544333 43333 11 1 0 11122345677777
Q ss_pred HHHHccC--ChhHHHHHHHHHHHHHhcCc
Q 000133 737 TRVLCEG--TISGKTLAAAAIARLLHSRK 763 (2100)
Q Consensus 737 ~~ll~~~--~~~~~~~Aa~aL~~l~~~~~ 763 (2100)
.+++... +..+.+.+..++.++....+
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 7776543 34577888888888775444
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-06 Score=115.11 Aligned_cols=105 Identities=15% Similarity=0.353 Sum_probs=89.4
Q ss_pred cCCCceeeeeccchhhh-----hhCCCcceEEEecCC--CCCccccccccCCCccccccceeccccCCCCCeEEEEeecC
Q 000133 1977 LPGTLVVIIKRGNNMKQ-----SVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2100)
-.|.|.|+|++..++.. ..|...-++++.++. ...++|||++++.||+|+|.|.|.+. .+..+.|+|+|+|+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~-~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC-TTSCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEec-CCCCCEEEEEEEEC
Confidence 35789999999999865 567788899999985 46788999999999999999999988 45678999999999
Q ss_pred CccCCcccceEEEEEeeEEeecccccceeecCC
Q 000133 2050 SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+.||.+.+|+|+|.+.++...+.....|.|.+.
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 999966789999999998666667778888554
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-05 Score=90.92 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=138.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC-CCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
+.+.+.+.++..|..|+..|..+...++.....- -...++.|...+. +++..++..|+.+|..|+..-.. ...-+-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSNYAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHHHHH
Confidence 6677889999999999999999987633321000 0134678888884 99999999999999999853222 1222334
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC----
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---- 559 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---- 559 (2100)
..+|.|+..+++.++.+|+.|..+|.+++...+ .. ..++.|...+++.++.+|..+...|..+.....+
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 478999999999999999999999999987432 21 2578899999999999999999999996544321
Q ss_pred -----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC
Q 000133 560 -----ATISQLTALLTSDLPESKVYVLDALKSMLSVVS 592 (2100)
Q Consensus 560 -----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~ 592 (2100)
..+|.|+..+.+..+++|..|.++++.+....+
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 467788889999999999999999998776543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.8e-05 Score=91.98 Aligned_cols=268 Identities=14% Similarity=0.071 Sum_probs=158.8
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHh
Q 000133 1318 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAA 1397 (2100)
Q Consensus 1318 l~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~ 1397 (2100)
-...++++.+ +|..+++-.--.+..++..++- ..-+++.|..=++++++-+|..|+++|.++...+-..+
T Consensus 70 f~~v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e-----~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~---- 139 (355)
T 3tjz_B 70 FFAMTKLFQS-NDPTLRRMCYLTIKEMSCIAED-----VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQA---- 139 (355)
T ss_dssp HHHHHGGGGC-CCHHHHHHHHHHHHHHTTTSSC-----GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHH----
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHH----
Confidence 3445566666 4777887777777776665321 11356778888999999999999999999986543332
Q ss_pred cCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCccc
Q 000133 1398 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKG 1477 (2100)
Q Consensus 1398 ~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~ 1477 (2100)
+.+.+-..+.+.++.||++|+.+..++....|+.. + +++..+.+++.+....+...+..+++++......
T Consensus 140 --l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 140 --IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp --HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 46778888999999999999999999988776532 2 5899999999888877777777788777764321
Q ss_pred ccccCchHHHHHHhccCC-CCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000133 1478 PSAAKVVEPLFLLLTRSE-FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1556 (2100)
Q Consensus 1478 ~~~~~~v~~Ll~ll~~~~-~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~ 1556 (2100)
.+..++.-+.... .+++.+..-++.+..+...+... ....+++.|..+|+..++.|..++++++..+..
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 2444455444321 23666665455444433221000 234567888899999999999999999999855
Q ss_pred cccccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCC
Q 000133 1557 EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADP 1621 (2100)
Q Consensus 1557 ~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~ 1621 (2100)
.+. ..+ ..++.+|..++.+.++++|..|++.|..+....|..+.. .-..+++++.+++.
T Consensus 280 ~~~--~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~--~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 280 CSA--KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA--CNLDLENLVTDANR 338 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------
T ss_pred CCH--HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH--HHHHHHHHccCCcH
Confidence 211 111 245678888999999999999999999999888775432 23456666766554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.9e-07 Score=92.49 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=95.0
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHH
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATIS 563 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~ 563 (2100)
..++.|+.+|.++++.+|..|+++|.++... .++.|+.+|++.++.++..|+++|+++. ++..++
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~---~~~a~~ 76 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ---DERAVE 76 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC---SHHHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 4678899999999999999999988876421 3689999999999999999999998884 356899
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 632 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L 632 (2100)
.|+.++.+.++.+|..+.++|+.+. +..+++.|+.+++++++.+|..|+++|.+|
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~--------------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG--------------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC--------------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC--------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999653 234589999999999999999999998653
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00021 Score=86.30 Aligned_cols=280 Identities=13% Similarity=0.024 Sum_probs=164.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 481 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~ 481 (2100)
...++.++.++|...++-.--.+.+++...++ .+ =++..|.+=++++++-++..|..+|+++.. ++..+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH--
Confidence 44567889999999999998888888776332 11 246778888889999999999999999973 444333
Q ss_pred hcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc
Q 000133 482 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT 561 (2100)
Q Consensus 482 ~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~ 561 (2100)
..+.+.+.+.+.++-+|..|+.+..+|....++.- .+.+..+-+++.+.++.++..|..+|..+..+ +..+
T Consensus 140 ---l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a 210 (355)
T 3tjz_B 140 ---IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLA 210 (355)
T ss_dssp ---HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHH
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHH
Confidence 35668888899999999999999999998766542 36889999999999999999999999999764 3446
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 562 ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE 641 (2100)
Q Consensus 562 i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~ 641 (2100)
+..|+.-+....-.....-...+..+......++ .-.....++.+..+|++.++.+.+.|+.++..+...+..
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--- 283 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--- 283 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---
Confidence 7777776665421111222223333333322210 001223467777788999999999999999998763222
Q ss_pred HHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 642 SSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 642 ~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
....++.+|..++.++++.++-.|++.|..+....++. . ...-..+..++.+++..+...|..+|-
T Consensus 284 --~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v----~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 284 --ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--V----TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred --HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--H----HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 12346778888898888899999999998886654321 1 234566778888888888777666653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.5e-05 Score=87.53 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=136.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcC-CC------CCcHHHHHHHhh-cCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHK-SD------TATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~-~~------~~~i~~L~~lL~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
+.+.+.+.+.+|..|..|+..|..+... +. ...++.|..++. +.+..++..+..+++.++...... +...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHH
Confidence 4577888899999999999999998764 21 145666777784 888899999999999998643221 1111
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-c
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV-R 679 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~-~ 679 (2100)
+ ...+|.+++.+.+.++.+|..|..+|..++.... . ...+|.+...+.+.++.++..++..|..+.... +
T Consensus 96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 1 2348999999999999999999999999987532 1 136888999999999999999999999965443 2
Q ss_pred hh-HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 680 EN-REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 680 ~~-~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
+. ... .. ...++.|+.++.++++++|..|..+++.+.
T Consensus 167 ~~~~~~-~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKK-LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHH-HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHH-HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 21 111 11 357899999999999999999999999887
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.97 E-value=0.21 Score=70.47 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHh-cCCHHHHHHHHHHHHhhhcc--
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKE-- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~-~~~~~v~~~aa~~L~~L~~~-- 84 (2100)
...+.++++.+..+ .++..|..|-..|..+-+..+ +.+.+..+|. +.+..+|..|+.+|.+..+.
T Consensus 23 ~~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~p~-----------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w 90 (963)
T 2x19_B 23 VENVEKALHQLYYD-PNIENKNLAQKWLMQAQVSPQ-----------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYW 90 (963)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSTT-----------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCH
Confidence 55677777775543 356778888888888776443 4445556664 45678999999999987632
Q ss_pred ----chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC--Ccch
Q 000133 85 ----NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK--SGNV 158 (2100)
Q Consensus 85 ----~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~--~~~~ 158 (2100)
++.|..+ +...+..+... .+++..++...+.++..+.....++. + .+.++.|+..+++... .++.
T Consensus 91 ~~l~~~~~~~i-r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~-----W--p~~l~~l~~~~~~~~~~~~~~~ 161 (963)
T 2x19_B 91 SDIPTDQYESL-KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDA-----W--PCAVADMVRLFQAEDSPVDGQG 161 (963)
T ss_dssp GGSCGGGHHHH-HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTT-----S--TTHHHHHHHHHCC------CHH
T ss_pred HhCCHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccc-----c--chHHHHHHHHHhhhccCCCcHH
Confidence 2223323 22223333332 12457778888888888887322111 1 2567788887754100 1222
Q ss_pred HHHHHHHHHHHhccC---C--hhhHHHHHh---cCCHHHHH----HhHccCC--HHHHHHHHHHHHHHhhcCcchhhHHh
Q 000133 159 VDNLLTGALRNLSTS---T--EGFWAATVQ---AGGIDILV----KLLTLGQ--SSTQAHVCFLLACMMEEDVSVCSRVL 224 (2100)
Q Consensus 159 v~~~a~~aL~nL~~~---~--~~~~~~i~~---~g~v~~Lv----~lL~s~~--~~v~~~a~~~L~~L~~~~~~~~~~i~ 224 (2100)
....+...|..++.+ . +..++.-.. ...++.++ .++...+ ..+...+..++..... -+.. ...
T Consensus 162 ~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~--~~~ 238 (963)
T 2x19_B 162 RCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVP--LQD 238 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCC--GGG
T ss_pred HHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCC--ccc
Confidence 445566667766521 0 001111101 12244444 4443332 2466777777643332 1111 112
Q ss_pred hhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q 000133 225 AADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 258 (2100)
Q Consensus 225 ~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~ 258 (2100)
....++.+++.+.. .+++..|+.+|..+...
T Consensus 239 ~~~ll~~l~~~l~~---~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 239 CEALIQAAFAALQD---SELFDSSVEAIVNAISQ 269 (963)
T ss_dssp THHHHHHHHHHTTS---TTTHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHhCC---chHHHHHHHHHHHHHcc
Confidence 35567777777753 36889999999998864
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00012 Score=79.81 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=151.4
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
+.+..|..++.+.++.++..+..+|..+-..-+.......-...++.++.++.+.++.+--.|..+|..|-...|-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 46788999999999999999999999998754444444444458999999999999999999999999999876655555
Q ss_pred HHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 522 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 522 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
+.. +..+|.++++++++-.+..++..|+.+--.+ .++.+.-+..++.+.+++++..+..++-+++.....++...
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-- 188 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-- 188 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG--
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH--
Confidence 544 6789999999999999999999999994433 34667778888989999999999999998888765444222
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFET 635 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~ 635 (2100)
+.+..+-.+|++.++.+++.|..++-.+...
T Consensus 189 ----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 ----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp ----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2245566789999999999999999999876
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-06 Score=90.33 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 000133 441 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 520 (2100)
Q Consensus 441 ~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~ 520 (2100)
...++.|+.+|+++++.+|..|+++|+.+.. + .++.|+++|.++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3678899999999999999999999987752 1 37899999999999999999999999863
Q ss_pred HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 521 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 521 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
...++.|+.++++.++.++..|+++|+++. ++..++.|..++.++++.+|..+..+|+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 125899999999999999999999999985 4678999999999999999999888876
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.001 Score=69.24 Aligned_cols=212 Identities=16% Similarity=0.116 Sum_probs=153.8
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcC-CcchHHHHHHHHHHHHhccCchhHHHHh
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSD-LPESKVYVLDALKSMLSVVSFSDILREG 600 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 600 (2100)
...+..++.+|.+.-|.++++|...+..++..-+. ..+..|+.+++.+ .-.......+++|.++.+. |+.++.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--Pe~v~~- 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--PELVKS- 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--HHHHHH-
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--HHHHHh-
Confidence 45778999999999999999999999999875533 2334455565543 3344456778888877654 333332
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
.+|.+..-.+-+++.++.+-..+|..+++.+|.. ..+++.-+..++.+.+..-+..|+..++.+....
T Consensus 108 -----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-- 175 (253)
T 2db0_A 108 -----MIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-- 175 (253)
T ss_dssp -----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--
T ss_pred -----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--
Confidence 2666666667789999999999999999988854 3356677888888888777888888887774322
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHh
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 760 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~ 760 (2100)
.... ..++|.|..+|++.++-||..|..+|.+++.-++....+ +..-.+-+.+.++-++...-.+|.++.-
T Consensus 176 ~~yv----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-----i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYV----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-----VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHH----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-----HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cccc----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 2222 568999999999999999999999999999665543322 2333344555666678887888887764
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00079 Score=73.58 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=160.4
Q ss_pred hcChHHHHHHHhcCCchHHHHHHHHHHHhccc--HHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhh
Q 000133 1357 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD--EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCK 1434 (2100)
Q Consensus 1357 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k 1434 (2100)
...+..|..+|.+.|+.++..|+.+|.++-.. ...+. ..-...++.++.++.+.|..+--.|+.||..+-.+.|-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34677889999999999999999999999842 33333 2334568999999999999999999999999999877766
Q ss_pred HHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcC
Q 000133 1435 LEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH 1514 (2100)
Q Consensus 1435 ~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~ 1514 (2100)
+...+ .+..+...+.+..+..+.++++.+..+.-. ...-+++..++.++.+.+ +.++-.+..+|.|+...
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~sLl~Skd--~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINELVVSPD--LYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHHHHhCCC--hhHHHHHHHHHHHhhcc
Confidence 66655 566778888888888999999998666111 224457899999997766 88888899999998654
Q ss_pred CCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHh--------ccCCHHHHH
Q 000133 1515 PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--------GSGIHILQQ 1586 (2100)
Q Consensus 1515 ~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL--------~s~~~~vr~ 1586 (2100)
.+... ...+++.-+-.+|+++++.++..|+.+|-++...+=. .+.++-+.+.+ .-+.|.+|.
T Consensus 181 S~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 250 (265)
T 3b2a_A 181 SADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRL 250 (265)
T ss_dssp CSSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHH
T ss_pred cCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 33322 2345666777889999999999999999999875322 23333333333 246677776
Q ss_pred HHHHHH
Q 000133 1587 RAVKAL 1592 (2100)
Q Consensus 1587 ~Al~AL 1592 (2100)
.|-..-
T Consensus 251 ka~~v~ 256 (265)
T 3b2a_A 251 KAKKVS 256 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-06 Score=109.68 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=15.4
Q ss_pred hcCCCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccC---CCccccccceeccccCCCCCeEEEEeecCC--
Q 000133 1976 CLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTG---PNPEWEESFAWSFEIPPKGQKLHISCKNKS-- 2050 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 2050 (2100)
|+.|.|.|+|.+..++... +.-+|.+.+++....+|||++++ .||+|+|.|+|... |+ .+.|.|+|+++.
T Consensus 8 r~~~~L~V~VieAk~L~~~---ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~-~~~L~v~V~d~~d~ 82 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK---KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PA-VRALRLHLYRDSDK 82 (483)
T ss_dssp EEEECC------------------------------------------------CCEECC--------------------
T ss_pred eeccEEEEEEEEcCCcCCC---CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC-CC-ccEEEEEEEecCCc
Confidence 4568899999999988754 24588888876656689999998 99999999999875 44 699999999952
Q ss_pred --ccCC-cccceEEEEEeeEEeecccccceeecC
Q 000133 2051 --KMGK-SSFGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2051 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
.+++ +.+|+|.|+++.+...+.+.+-|.|..
T Consensus 83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~ 116 (483)
T 3bxj_A 83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116 (483)
T ss_dssp ------------------------CCEECC----
T ss_pred cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence 3554 556999999999988788888999953
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=96.00 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCcc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 2052 (2100)
.|.|.|+|++..++.. ..|.+.-++++.+. ....++|+|++++.||+|+|.|.|.+..+- .+..|+|+|+|++.|
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 4789999999999964 34557788888883 456788999999999999999999875222 256999999999999
Q ss_pred CCcc-cceEEEE-EeeEEe-ecccccceeecCC
Q 000133 2053 GKSS-FGKVTIQ-IDRVVM-LGAVAGEYTLLPE 2082 (2100)
Q Consensus 2053 ~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 2082 (2100)
|++. +|++.|. +-.... .+....-|.|.+.
T Consensus 99 ~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~ 131 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 131 (296)
T ss_dssp SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCCceEEEEEeccccccccCCccceeeeccccc
Confidence 8755 5999984 222222 2233445667554
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0015 Score=67.96 Aligned_cols=213 Identities=15% Similarity=0.228 Sum_probs=154.6
Q ss_pred hCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhh
Q 000133 440 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDI 518 (2100)
Q Consensus 440 ~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~ 518 (2100)
+...+..++.+|.++-..+|.+|...+.+++...++....+ +..|+.+++ +..-......+.+++.++...|+.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 44567889999999999999999999999998777754433 334555654 446666566888999998766654
Q ss_pred HHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchh
Q 000133 519 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595 (2100)
Q Consensus 519 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~ 595 (2100)
-. +++|.+..-.+-++++++-.-..+|..++..... .....+..++.+.+..-|..+..=++ .+..+.
T Consensus 105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~---alGen~- 175 (253)
T 2db0_A 105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIE---AMGENS- 175 (253)
T ss_dssp HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCTTT-
T ss_pred HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHH---HHhccC-
Confidence 32 3678888888889999999999999998874422 34555666777655444444444333 332221
Q ss_pred HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 596 ~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
.+ .+ ..-+|.|..+|.+.++-+|..|..+|.+++..++..+.. +..-+.-+.+.+..+++..-.+|+.+.
T Consensus 176 -~~-yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 -FK-YV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp -HH-HH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred -cc-cc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 11 22 234899999999999999999999999999998865543 334556678888889988888888775
Q ss_pred c
Q 000133 676 L 676 (2100)
Q Consensus 676 ~ 676 (2100)
.
T Consensus 246 l 246 (253)
T 2db0_A 246 L 246 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=85.78 Aligned_cols=190 Identities=9% Similarity=0.110 Sum_probs=138.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hhccCccchHHHHh-CCcHHHHHHhh-CCCCHHHHHHHHHHHHHhccCCc-ccHHHH
Q 000133 405 LVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQG-REGIQLLISLL-GLSSEQQQECSVALLCLLSNEND-DSKWAI 480 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~-L~~~~~~~~~~i~~-~g~i~~Lv~lL-~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i 480 (2100)
+.+.+.+.++.-|..|+..|.. +..+++.....-.+ ...+..|...+ ++.+..++..|+.+|+.|+.+-. ..-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456788999999999999999 87654432100001 13467788888 78899999999999999985332 111102
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-- 558 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-- 558 (2100)
+....+|.++..+++..+.+++.+..+|..++...+..-..-.-...++.|+..|++.++.+|+.+..+|..++....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223368999999999999999999999999987432110000001267888899999999999999999998886443
Q ss_pred ---------CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCch
Q 000133 559 ---------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 594 (2100)
Q Consensus 559 ---------~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~ 594 (2100)
+..+|.|...+.+.++++|..|.++++.+....+..
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 567888899999999999999999999887655443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0034 Score=77.31 Aligned_cols=345 Identities=12% Similarity=0.078 Sum_probs=197.0
Q ss_pred cCCchHHHHHHHhc-CCHHHHHHHHHHHHhhhccch---hhHHHHhcCC-h-HHHHH-hhcCCCHHHHHHHHHHHHHHhc
Q 000133 52 HSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENE---LRVKVLLGGC-I-PPLLG-LLKSSSAEGQIAAAKTIYAVSQ 124 (2100)
Q Consensus 52 ~~g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~~~~---~~~~i~~~g~-i-~~Lv~-lL~s~~~~~~~~A~~aL~~Ls~ 124 (2100)
+..++..++.+|+. ..+++...+...+..+..+++ .+..+...+. . ..+.. .+..++.-....+...+.-++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34677889999985 566888889999999887765 4444433221 1 11222 3333333344555555444543
Q ss_pred cCCCCcccccchhccCChHHHHH------HhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCC--HHHHHHhHcc
Q 000133 125 GGAKDYVGSKIFSTEGVVPVLWE------QLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGG--IDILVKLLTL 196 (2100)
Q Consensus 125 ~~~~~~~~~~~~~~~g~vp~L~~------lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~--v~~Lv~lL~s 196 (2100)
...+ ...++|.++. .|+.. +....+..+..+|..|.. .+.+|..+.+.++ +++++.+++.
T Consensus 155 ~~~~---------~~~~l~~l~~~~~~~~~L~~~--~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~ 222 (480)
T 1ho8_A 155 NGLH---------NVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQR 222 (480)
T ss_dssp TTTC---------CHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCc---------cHhHHHHHhhhHHHHHHhccc--cCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHH
Confidence 1111 2334444443 44332 112234456777887774 4578777765543 6666554431
Q ss_pred ---------------C--CHHHHHHHHHHHHHHhhcCcchhhHHhhhchH--HHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 000133 197 ---------------G--QSSTQAHVCFLLACMMEEDVSVCSRVLAADAT--KQLLKLLGSGNEASVRAEAAGALKSLSD 257 (2100)
Q Consensus 197 ---------------~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~ 257 (2100)
+ ...++.+++.+++.|+...+ ....+...+.. +.|+.+++....+++.+.+..+|.||..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~ 301 (480)
T 1ho8_A 223 ATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCS 301 (480)
T ss_dssp HHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTS
T ss_pred hhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhc
Confidence 1 23567899999987776544 66666665543 6788888887778999999999999997
Q ss_pred CChHh-----HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhh
Q 000133 258 HCKDA-----RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVAD 332 (2100)
Q Consensus 258 ~~~~~-----~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~ 332 (2100)
..+.. ...++..++ ++++..|.... -.++++.+.--
T Consensus 302 ~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk------~~Dedl~edl~-------------------------------- 342 (480)
T 1ho8_A 302 TRVKQHKKVIKQLLLLGNA-LPTVQSLSERK------YSDEELRQDIS-------------------------------- 342 (480)
T ss_dssp SSSTTHHHHHHHHHHHHCH-HHHHHHHHSSC------CSSHHHHHHHH--------------------------------
T ss_pred ccchhhhhHHHHHHHHccc-hHHHHHHhhCC------CCcHHHHHHHH--------------------------------
Confidence 55211 122333344 44555554321 11233322211
Q ss_pred hhhhhHHHHHHhccccCCCCCCCchhhHHHHHh----hcCCCCChH-HHHHHHHHHHHHhCCCccchhhhc--cccHHHH
Q 000133 333 TLGALASALMIYDSKAESTKPSDPLIVEQTLVN----QFKPRLPFL-VQERTIEALASLYGNPLLSIKLEN--SEAKRLL 405 (2100)
Q Consensus 333 ~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~----lL~~~~~~~-vq~~aa~aL~~L~~~~~~~~~l~~--~g~i~~L 405 (2100)
++...++..... -+.+.....+ .|.=++... -+.+ .++..++.+ ...++.|
T Consensus 343 ------~L~e~L~~~~~~-----ltsfDeY~~El~sG~L~WSP~H~se~FW-----------~ENa~kf~e~~~~llk~L 400 (480)
T 1ho8_A 343 ------NLKEILENEYQE-----LTSFDEYVAELDSKLLCWSPPHVDNGFW-----------SDNIDEFKKDNYKIFRQL 400 (480)
T ss_dssp ------HHHHHHHHHHHT-----CCHHHHHHHHHHHTCCCCCGGGGCHHHH-----------HHHSGGGSSGGGHHHHHH
T ss_pred ------HHHHHHHHHHHh-----cccHHHHHHHHhcCCcccCCCccchhHH-----------HHHHHHHHhcchHHHHHH
Confidence 111111100000 0011111111 111111000 0000 011122222 2346788
Q ss_pred HHhhcC----------CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 406 VGLITM----------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 406 v~lL~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
+.+|++ .|+.+..-||.=|+.++...|.-+..+.+.|+-..++.++.+++++++.+|..++..+.
T Consensus 401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999973 36888999999999999999888888888899999999999999999999999888764
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=104.54 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=86.3
Q ss_pred hcCCCceeeeeccchhhhh----hCCCcceEEEec-C---CCCCccccccccC-CCccccccceeccccCCCCCeEEEEe
Q 000133 1976 CLPGTLVVIIKRGNNMKQS----VGNPSVYCKLTL-G---NTPPRQTKIVSTG-PNPEWEESFAWSFEIPPKGQKLHISC 2046 (2100)
Q Consensus 1976 ~i~~~~~~~~~r~~~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 2046 (2100)
..+|.|+|+|++..++... .|...-++.+.+ | +...++|||++++ .||+|+|.|+|.+. .|....|.+.|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~-~~el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVT-VPDLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEES-CGGGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEe-cCCCCEEEEEE
Confidence 4678999999999999765 345667888887 4 2346789999998 99999999999988 45557999999
Q ss_pred ecCCccCCcc-cceEEEEEeeEEeecccccceeecCCCCCCCC---cceEEEEEe
Q 000133 2047 KNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPS---RNLEIEFLW 2097 (2100)
Q Consensus 2047 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 2097 (2100)
++++.||++. +|+++|+++.+.. | | ..+.|. +++|.+ -+|-++|..
T Consensus 573 ~D~D~~~~dd~iG~~~ipl~~L~~-G-~-r~v~L~--d~~g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 573 EDYDSSSKNDFIGQSTIPWNSLKQ-G-Y-RHVHLL--SKNGDQHPSATLFVKISI 622 (624)
T ss_dssp EECCSSSCCEEEEEEEEEGGGBCC-E-E-EEEEEE--CTTSCEEEEEEEEEEEEE
T ss_pred EEcCCCCCCceeEEEEEEHHHcCC-C-c-EEEeCC--CCCcCCCCceEEEEEEEE
Confidence 9999997655 5999999999754 3 2 145553 334443 245555544
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0043 Score=87.78 Aligned_cols=492 Identities=9% Similarity=0.050 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHc-cCCHHHHHHHHHHHHHHhhcCcch----hhHHhhhchHHHHH
Q 000133 159 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSV----CSRVLAADATKQLL 233 (2100)
Q Consensus 159 v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~-s~~~~v~~~a~~~L~~L~~~~~~~----~~~i~~~g~i~~Lv 233 (2100)
.+..|...|..+-.. ++.|. .+..+|. +.++.+|..|+.+|.+....+-.. -...+....+..+.
T Consensus 23 ~r~~A~~~L~~~~~~-p~~w~---------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~ 92 (971)
T 2x1g_F 23 NQAITHEWLTDAEAS-PQAWQ---------FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIV 92 (971)
T ss_dssp C----CHHHHHTTTS-THHHH---------HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-HHHHH---------HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHH
Confidence 444566667776533 45555 3455554 467889999999998887432111 11222333344444
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcch
Q 000133 234 KLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV 313 (2100)
Q Consensus 234 ~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~ 313 (2100)
+.- .+ +..+|...+.+|..++...-. .-.+.++.|+..+.+++. ..-.+....+.+...|..++...
T Consensus 93 ~~~-~~-~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~---~~~~~~~~~~~~l~iL~~l~EEi--- 159 (971)
T 2x1g_F 93 RFA-GG-PKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRM---PNVSADVQLWIMLEVLTAIPEEA--- 159 (971)
T ss_dssp HHT-TS-CHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHH---
T ss_pred HhC-CC-CHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhcccc---ccCCCHHHHHHHHHHHHHhHHHH---
Confidence 332 12 357999999999998864211 223567788887754210 00002345667777777655310
Q ss_pred hhhccccccCCCChhhhhhh-hhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCC-------hHHHHHHHHHHHH
Q 000133 314 ISSLGQSLESCSSPAQVADT-LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP-------FLVQERTIEALAS 385 (2100)
Q Consensus 314 i~~l~~~~~~~~~~~~~~~~-~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~-------~~vq~~aa~aL~~ 385 (2100)
... +...-+....+. ...+. .+.+.+..++..... ..++..+..|+..
T Consensus 160 ~~~-----~~~~~r~~~~~~l~~~~~-------------------~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 160 QVI-----HTSVKRVVLRAEIAKRVQ-------------------LVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp HHC-----CCSSCHHHHHHHHHTTHH-------------------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hcc-----CcHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHH
Confidence 000 000001111110 00111 233333333321111 1467778888876
Q ss_pred Hh---CCCccchhhhccccHHHHHHhhc----------------CCCHHHHHHHHHHHHHhhccCc--cchHHHHhCCcH
Q 000133 386 LY---GNPLLSIKLENSEAKRLLVGLIT----------------MATNEVQEELVRALLKLCNNEG--SLWRALQGREGI 444 (2100)
Q Consensus 386 L~---~~~~~~~~l~~~g~i~~Lv~lL~----------------~~~~~v~~~A~~aL~~L~~~~~--~~~~~i~~~g~i 444 (2100)
.. ..|.. .....++.+.. +. ..+++.++.|+.++..+....+ +....+. ..+
T Consensus 216 ~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~--~l~ 288 (971)
T 2x1g_F 216 WIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF--VLI 288 (971)
T ss_dssp HHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH--HHH
T ss_pred HHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH--HHH
Confidence 42 23332 22334555554 31 1457889999999999887432 1112221 223
Q ss_pred HHHHHh-------hCCCC---HHHHHHHHHHHHHhccCCcccHH----------HHHhcCChHHHHHhccC-----CCHH
Q 000133 445 QLLISL-------LGLSS---EQQQECSVALLCLLSNENDDSKW----------AITAAGGIPPLVQILES-----GSAK 499 (2100)
Q Consensus 445 ~~Lv~l-------L~s~~---~~v~~~A~~aL~nLs~~~~~~~~----------~i~~~g~i~~Lv~lL~~-----~~~~ 499 (2100)
+.++.+ +...+ ++.....+..+..++........ .-.-...++.|+.+... .+++
T Consensus 289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~ 368 (971)
T 2x1g_F 289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES 368 (971)
T ss_dssp HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence 333332 23334 25555666666666532221100 00001234455554433 3677
Q ss_pred HHHHHHHHHHHHhcC--------C-hhhHHHHHh--CCcHHHHHHHhhcCC--------h-------hHHHHHHHHHHHH
Q 000133 500 AKEDSASILRNLCNH--------S-EDIRACVES--ADAVPALLWLLKNGS--------A-------NGKEIAAKTLNHL 553 (2100)
Q Consensus 500 vre~A~~aL~~L~~~--------~-~~~~~~i~~--~g~i~~Lv~lL~~~~--------~-------~~~~~Aa~aL~~L 553 (2100)
+...+++.+..++.. . +.....+.. ...++.++..+.-++ + ..+..+..+|..+
T Consensus 369 v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~ 448 (971)
T 2x1g_F 369 CSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYC 448 (971)
T ss_dssp THHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888777641 0 111111111 134455554443211 1 2456677788777
Q ss_pred hcCCCCCcHHHHHHH----hhc-----CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh---c--CCCH
Q 000133 554 IHKSDTATISQLTAL----LTS-----DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL---S--STKE 619 (2100)
Q Consensus 554 ~~~~~~~~i~~L~~l----L~~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~--s~~~ 619 (2100)
+..-....++.+... +.. .++..++.+..+++.++....... ...++.++.++ . +.++
T Consensus 449 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--------~~~l~~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 449 YDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--------KRQIPRLMRVLAEIPYEKLNV 520 (971)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHSCTTTSCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh--------hHHHHHHHHHHHhcCccccCH
Confidence 765444445554433 333 567788889999988765433211 12344444433 3 3489
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh
Q 000133 620 ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA 699 (2100)
Q Consensus 620 ~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll 699 (2100)
.+|..++++++.++..-.+.. -.-..+++.|+..+ + +.++..|+.++.+++...+ ......-...+..|.+++
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~--~~l~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ--LQLKPYADPLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHH
Confidence 999999999999885311111 11123567777777 3 5789999999999986542 222222234455555666
Q ss_pred CC--CCHHHHHHHHHHHHHHhc
Q 000133 700 GS--PVLEVAEQATCALANLIL 719 (2100)
Q Consensus 700 ~~--~~~evr~~aa~aL~~L~~ 719 (2100)
.. .+.+.+.....+++.++.
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHH
Confidence 66 467889999999999874
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.64 E-value=2.2e-05 Score=93.94 Aligned_cols=89 Identities=26% Similarity=0.424 Sum_probs=71.2
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCC-C---CCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGN-T---PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++.. ..|.+..|+++.+++ + ..++|+|++++.||+|+|.|.|.+..+.. ...|+|+|+|++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 4779999999999864 345677888888863 3 35689999999999999999998753332 348999999999
Q ss_pred ccCCcc-cceEEEEEee
Q 000133 2051 KMGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~ 2066 (2100)
.||++. +|+|.|.+..
T Consensus 229 ~~~~~~~iG~~~i~l~~ 245 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNS 245 (284)
T ss_dssp SSSCCCEEEEEEEETTC
T ss_pred CCCCCcEEEEEEECCCC
Confidence 998765 5999999865
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00053 Score=79.80 Aligned_cols=205 Identities=9% Similarity=0.073 Sum_probs=140.7
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHH-Hh-CCCccchhhhc-cccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccCc--cch
Q 000133 362 TLVNQFKPRLPFLVQERTIEALAS-LY-GNPLLSIKLEN-SEAKRLLVGLI-TMATNEVQEELVRALLKLCNNEG--SLW 435 (2100)
Q Consensus 362 ~Lv~lL~~~~~~~vq~~aa~aL~~-L~-~~~~~~~~l~~-~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~L~~~~~--~~~ 435 (2100)
-+...+.+.. +.-|..+..+|.. +. ++++....-.+ .+.+..|...+ ++.+..++..|+.+|..|+.+-. ...
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 3445555444 4458889999998 74 44543310111 23466777888 68899999999999999996543 232
Q ss_pred -HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 000133 436 -RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 514 (2100)
Q Consensus 436 -~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~ 514 (2100)
.... ..+|.++..+++..+.++..+..+|-.++...+.......-...++.|+..|.+.++.+|+.++..|..+...
T Consensus 99 ~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 99 KDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2222 3689999999999999999988888888753211000000012567888899999999999999999999865
Q ss_pred Chhh-HH--HHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh
Q 000133 515 SEDI-RA--CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL 569 (2100)
Q Consensus 515 ~~~~-~~--~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL 569 (2100)
.+.. .. .......+|.|.+++.+.++.+|+.|..+|+.++..-..+.+.+++.-|
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4321 11 1112568899999999999999999999999988644444555555544
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=97.61 E-value=1.2e-05 Score=96.89 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCceeeeeccchhhhh--hCCCcceEEEecC-CC---CCccccccccCCCccccccceeccccCCC-CCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQS--VGNPSVYCKLTLG-NT---PPRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|++..++... .|.+.-|+++.++ ++ ..++|+|++++.||+|+|.|.|.+..+.. ...|+|+|+|++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 48899999999998643 4556789999887 33 45689999999999999999998764332 348999999999
Q ss_pred ccCCc-ccceEEEEEeeE
Q 000133 2051 KMGKS-SFGKVTIQIDRV 2067 (2100)
Q Consensus 2051 ~~~~~-~~~~~~~~~~~~ 2067 (2100)
.||++ .+|+|.|.+...
T Consensus 231 ~~~~~~~iG~~~i~l~~~ 248 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAA 248 (296)
T ss_dssp SSSCCEEEEECCCSSCTT
T ss_pred CCCCCceEEEEEECCccC
Confidence 99875 459999998864
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.74 Score=64.08 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC---CHHHHHHHHHHHHhhhc
Q 000133 7 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 7 ~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~---~~~v~~~aa~~L~~L~~ 83 (2100)
+.+.|.+.++...++.+++..|..|-..|..+-+..+. ......+|.++ +..+|..++.+|.+..+
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~a-----------w~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~ 72 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTG-----------WKICHEIFSEKTKYKPSTRLICLQTLSEKVR 72 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTH-----------HHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhH-----------HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 36788889988888877889999999999988876552 33445566553 68999999999988664
Q ss_pred --cch----hhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCc
Q 000133 84 --ENE----LRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 156 (2100)
Q Consensus 84 --~~~----~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~ 156 (2100)
.++ .+..+ +...+..+...-. .+..-++...+.+|..+....-++. . .+.++.++.++..++. .
T Consensus 73 ~l~~e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~--W-----p~~i~~l~~~~~~~~~-~ 143 (980)
T 3ibv_A 73 EWNNESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN--W-----NDFFASLQGVIAASSQ-S 143 (980)
T ss_dssp HCCTTTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT--C-----TTHHHHHHHHHHHHCC-H
T ss_pred hCChhhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc--C-----chHHHHHHHHhcCCCh-h
Confidence 122 22222 2222332322100 2345567777777777765211111 1 2456777777765321 0
Q ss_pred chHHHHHHHHHHHhcc---C-----Ch--hh-----HHHHHhcC---CHHHHHHhH----ccCCHHHHHHHHHHHHHHhh
Q 000133 157 NVVDNLLTGALRNLST---S-----TE--GF-----WAATVQAG---GIDILVKLL----TLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 157 ~~v~~~a~~aL~nL~~---~-----~~--~~-----~~~i~~~g---~v~~Lv~lL----~s~~~~v~~~a~~~L~~L~~ 214 (2100)
......++.|..++. + .+ .. +..+.+.. +++....+| .+.++.++..+..+|.....
T Consensus 144 -~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 144 -EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp -HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 122223334432211 1 00 01 12222210 133333344 34778888888888877665
Q ss_pred cCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 000133 215 EDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 259 (2100)
Q Consensus 215 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~ 259 (2100)
.-+ ...+++...++.+.+.|.. .+++..|+.+|..+....
T Consensus 223 wi~--~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 223 WIN--INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKK 262 (980)
T ss_dssp TSC--HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSC
T ss_pred hcC--HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcC
Confidence 432 3556677888999988876 579999999999988643
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.016 Score=71.31 Aligned_cols=339 Identities=13% Similarity=0.045 Sum_probs=196.5
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHH-hCCC---ccchhhh-ccccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccC
Q 000133 358 IVEQTLVNQFKPRLPFLVQERTIEALASL-YGNP---LLSIKLE-NSEAKRLLVG-LITMATNEVQEELVRALLKLCNNE 431 (2100)
Q Consensus 358 ~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L-~~~~---~~~~~l~-~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~~~ 431 (2100)
.....++.+|...+...+.+.+..-+..+ ..+| .....+. .......+.. .+..+++-.+..++.++..++..+
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 34566777777666555566666677776 3444 2212222 2222222333 233445556677777767765443
Q ss_pred ccchHHHHhCCcHH--HHHHhhCC-CCHHHHHHHHHHHHHhccCCcccHHHHHhcCC--hHHHHHhcc------------
Q 000133 432 GSLWRALQGREGIQ--LLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGG--IPPLVQILE------------ 494 (2100)
Q Consensus 432 ~~~~~~i~~~g~i~--~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~--i~~Lv~lL~------------ 494 (2100)
....+.+. ..+. -++..|.+ .+.+.+..++.+|..|.. .++.|..+.+.++ +|+++..+.
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 33211111 1112 24445554 345667789999999985 7888888887654 566654332
Q ss_pred ----CC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH--HHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCC---cHH
Q 000133 495 ----SG-SAKAKEDSASILRNLCNHSEDIRACVESADAV--PALLWLLKN-GSANGKEIAAKTLNHLIHKSDTA---TIS 563 (2100)
Q Consensus 495 ----~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~---~i~ 563 (2100)
.+ ..+++.+++.++|-|+-. ++....+...+.. +.|+++++. ...++.+-+..+|.|+....... .++
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 11 356788999999999985 6666666666644 677788886 45789999999999998754211 111
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhcc-CchhHHHHhhhccchHHHHHHHhc----CCCHHHHHHHHHHH-HHHhcCCh
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKILS----STKEETQAKSASAL-AGIFETRK 637 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~i~~~~~i~~Lv~lL~----s~~~~~~~~Aa~aL-~~L~~~~~ 637 (2100)
.++. .......+..|.... +.+|+... +..|.+.|. .-+. .-++..... +.|.+++.
T Consensus 313 ~~~~---------~~~~l~~l~~L~~rk~~Dedl~ed-------l~~L~e~L~~~~~~lts-fDeY~~El~sG~L~WSP~ 375 (480)
T 1ho8_A 313 QLLL---------LGNALPTVQSLSERKYSDEELRQD-------ISNLKEILENEYQELTS-FDEYVAELDSKLLCWSPP 375 (480)
T ss_dssp HHHH---------HHCHHHHHHHHHSSCCSSHHHHHH-------HHHHHHHHHHHHHTCCH-HHHHHHHHHHTCCCCCGG
T ss_pred HHHH---------HccchHHHHHHhhCCCCcHHHHHH-------HHHHHHHHHHHHHhccc-HHHHHHHHhcCCcccCCC
Confidence 1110 001122233332221 12221111 223333222 1111 111222222 33555433
Q ss_pred hhHHHHHhc----------CchHHHHHhhcC----------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHH
Q 000133 638 DLRESSIAV----------KTLWSVMKLLDV----------GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 697 (2100)
Q Consensus 638 ~~~~~~~~~----------g~v~~Lv~lL~~----------~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ 697 (2100)
+.-+.+-.. ..+..|+++|.+ .++.+..-||.=|+.++.+.+..... +-+-|+=..+++
T Consensus 376 H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i-~~~lg~K~~VM~ 454 (480)
T 1ho8_A 376 HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV-LDKTGGKADIME 454 (480)
T ss_dssp GGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH-HHHHSHHHHHHH
T ss_pred ccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHH-HHHcCcHHHHHH
Confidence 322222111 278899999963 36778888999999999988754443 667788888889
Q ss_pred HhCCCCHHHHHHHHHHHHHHh
Q 000133 698 LAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 698 ll~~~~~evr~~aa~aL~~L~ 718 (2100)
+|.+++++||.+|..|+..++
T Consensus 455 Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 455 LLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HTSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998776
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.30 E-value=0.84 Score=63.63 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=125.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccC---CCCcc
Q 000133 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGG---AKDYV 131 (2100)
Q Consensus 56 v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~---~~~~~ 131 (2100)
+..++..+-+++.+.|..|-..|..+-+.+ ++++.+..+|. +.++.+|..|+..|.+.-... .+++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e- 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND- 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH-
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH-
Confidence 445555555666677888888887765444 55666677774 557889999999998765511 1111
Q ss_pred cccchhccCChHHHHHHhhccC--CCcchHHHHHHHHHHHhccCC-hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHH
Q 000133 132 GSKIFSTEGVVPVLWEQLKNGL--KSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 208 (2100)
Q Consensus 132 ~~~~~~~~g~vp~L~~lL~~~~--~~~~~v~~~a~~aL~nL~~~~-~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~ 208 (2100)
.+..++..++..+........ ...+.++.....++..+.... +..|. +.++.++.++++ ++........+
T Consensus 88 -~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~i 160 (1023)
T 4hat_C 88 -HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIV 160 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHH
Confidence 111223333333322211100 012334455556665554321 23454 457788888865 34556666777
Q ss_pred HHHHhhc-----Cc---ch-hhHH----hh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChH
Q 000133 209 LACMMEE-----DV---SV-CSRV----LA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIP 273 (2100)
Q Consensus 209 L~~L~~~-----~~---~~-~~~i----~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~ 273 (2100)
|..+... .. .. +..+ .. ...+..+.++|....+.++...+..+|.....--+ -..+.+.+-++
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~ 238 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILE 238 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHH
Confidence 7665532 01 01 1111 11 23344455555554445677888888877665222 23466677788
Q ss_pred HHH-HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC
Q 000133 274 AMI-NATIAPSKEFMQGEYAQALQENAMCALANISG 308 (2100)
Q Consensus 274 ~Lv-~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~ 308 (2100)
.++ .++.. +.++..|+.+|..+..
T Consensus 239 ~l~~~~L~~-----------~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 239 LLSTKFMTS-----------PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHTHHHHS-----------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-----------HHHHHHHHHHHHHHHc
Confidence 888 77643 5688999999998765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.018 Score=78.13 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCcc---chHHHHhCCcHHHHHHhhC
Q 000133 376 QERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS---LWRALQGREGIQLLISLLG 452 (2100)
Q Consensus 376 q~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~ 452 (2100)
+..++..++.+..++.....+. .+.+..+...+.+.... +.|+.++..||..... ....++ +.++.++..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~ 105 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc
Confidence 4667778888744332111121 35666677777655333 9999999999954322 222333 56889999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHH
Q 000133 453 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 531 (2100)
Q Consensus 453 s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 531 (2100)
+....++..|..++..+....+.... ...+|.|+..|.++ .-+.+..|+.++..|+...++. -...-...+|.+
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~ 180 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVL 180 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcch
Confidence 99999998877776666543333221 22578899988766 5789999999999999644321 111124578999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH
Q 000133 532 LWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 607 (2100)
Q Consensus 532 v~lL~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i 607 (2100)
-+.+.+..+++++.|..++..+|..-++ ..+|.|+.-+.+.+ ++ -.++..|+..+.+.......=..+ +
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~-~~-~~~~~~l~~~tfv~~v~~~~l~~~-----~ 253 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT-EV-PETVHLLGATTFVAEVTPATLSIM-----V 253 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT-HH-HHHHHHHTTCCCCSCCCHHHHHHH-----H
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh-hh-HHHHHHhhcCeeEeeecchhHHHH-----H
Confidence 9999999999999999999999874433 56777887776552 22 223444444344444333222222 7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000133 608 ETMIKILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAI 674 (2100)
Q Consensus 608 ~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~aa~aL~~L 674 (2100)
|.|..-|+..+..+++.++-.+-|+|+--++ ...+......+|.|.+.. .-.+|+++..+.+++..|
T Consensus 254 p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 254 PLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 7788888888999999999999999986544 333456667888888766 456788888888888777
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=98.00 Aligned_cols=103 Identities=25% Similarity=0.493 Sum_probs=81.8
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCc
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2051 (2100)
+|.|+|+|.+..++.. ..|.+.-+.++.+- ....++|+|++++.||+|+|.|.|.+........|.|+|++++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 5789999999988854 34556667766662 33467899999999999999999998866677789999999999
Q ss_pred cCCccc-ceEEEEEeeEEeecccccceeecC
Q 000133 2052 MGKSSF-GKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2052 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
+|++.+ |.+.|.+..+...+ ..+-|.|..
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred ccccccccccccchhhhccCC-cccceeecc
Confidence 987765 99999998886654 366676643
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.17 E-value=0.22 Score=70.80 Aligned_cols=514 Identities=11% Similarity=0.043 Sum_probs=246.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhc
Q 000133 60 VSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST 138 (2100)
Q Consensus 60 ~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~ 138 (2100)
+..+-+++.+.|.+|-..|..+-+.+ +++..+..+|. +.+..+|..|+..|.+.....-.. -..-..
T Consensus 22 l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~---l~~~~~ 89 (1049)
T 3m1i_C 22 VSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL---LPNDHR 89 (1049)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG---SCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc---CCHHHH
Confidence 33334566677888888888775443 56677777774 457888999999999876521100 000011
Q ss_pred cCChHHHHHHhhccCCC------cchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHH
Q 000133 139 EGVVPVLWEQLKNGLKS------GNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 211 (2100)
Q Consensus 139 ~g~vp~L~~lL~~~~~~------~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~ 211 (2100)
.++-..++..+...... ++.++..+..++..++.. -+..|. +.++.|+.+++ +++..+..+..+|..
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHH
Confidence 12222344444332111 234666666666666532 224555 45788888886 566667777788877
Q ss_pred HhhcCc--------chh-----hHHhh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHH
Q 000133 212 MMEEDV--------SVC-----SRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMI 276 (2100)
Q Consensus 212 L~~~~~--------~~~-----~~i~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv 276 (2100)
+...-. ..+ ..+.. ...+..+.+.+....+.+++..+..++.+....-+. ..+.+..-++.+.
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~ 241 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLS 241 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHH
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHH
Confidence 762211 001 11111 122334455555544467888888888775542221 2234444444444
Q ss_pred HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCc
Q 000133 277 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 356 (2100)
Q Consensus 277 ~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~ 356 (2100)
..+.. ++.++..++.+|..+....- ++.. ..... .+..++.
T Consensus 242 ~~~l~----------~~~~~~~a~~~L~~i~~~~~-----------~~~~-~~~~~------~~~~l~~----------- 282 (1049)
T 3m1i_C 242 TKFMT----------SPDTRAITLKCLTEVSNLKI-----------PQDN-DLIKR------QTVLFFQ----------- 282 (1049)
T ss_dssp THHHH----------SHHHHHHHHHHHHHHHHCCC-----------CTTC-HHHHH------HHHHHHH-----------
T ss_pred HHhCC----------CHhHHHHHHHHHHHHHhCCC-----------Ccch-hhHHH------HHHHHHH-----------
Confidence 22211 25677778888776553100 0000 00000 0000000
Q ss_pred hhhHHHHHh-hcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-----
Q 000133 357 LIVEQTLVN-QFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN----- 430 (2100)
Q Consensus 357 ~~i~~~Lv~-lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~----- 430 (2100)
.+...+.. ++-.... +......-.+.+.+.....++.+..+...
T Consensus 283 -~~l~~l~~si~p~~~~-----------------------------l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 332 (1049)
T 3m1i_C 283 -NTLQQIATSVMPVTAD-----------------------------LKATYANANGNDQSFLQDLAMFLTTYLARNRALL 332 (1049)
T ss_dssp -HHHHHHHHHTCCTTSC-----------------------------HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhhCCCccc-----------------------------HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000100 0000000 00000001122333333444444332221
Q ss_pred --CccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccC---CcccHHH--HHhcCChHHHHHhccCC-------
Q 000133 431 --EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWA--ITAAGGIPPLVQILESG------- 496 (2100)
Q Consensus 431 --~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~---~~~~~~~--i~~~g~i~~Lv~lL~~~------- 496 (2100)
.+.....+ ...++.++.....++.++...+......++.. .+..+.. -.-...++.++..+.-+
T Consensus 333 ~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 333 ESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred cCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 11111222 13466666666677778777777666666530 0111100 01111234444433211
Q ss_pred ------------CH---HHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh--cCChhHHHHHHHHHHHHhcCCCC
Q 000133 497 ------------SA---KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK--NGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 497 ------------~~---~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
+. ..+..+..+|..++...+.. +. .-..+.+-+.+. ..+|+.++.++.+++.++..-..
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~ 486 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE 486 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 11 23445666777776432221 10 012233334443 35789999999999988753221
Q ss_pred ----CcHHHHHHHhhc---------CCcchHHHHHHHHHHHHhc-cCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHH
Q 000133 560 ----ATISQLTALLTS---------DLPESKVYVLDALKSMLSV-VSFSDILREGSAANDAVETMIKILSSTKEETQAKS 625 (2100)
Q Consensus 560 ----~~i~~L~~lL~~---------~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~A 625 (2100)
..++.++..+.. .++-++..+..+++.++.. ..+++.+. ..++.++..|.++++.++..|
T Consensus 487 ~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~------~vl~~ll~~l~~~~~~V~~~A 560 (1049)
T 3m1i_C 487 DTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR------TVILKLFEFMHETHEGVQDMA 560 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH------HHHHHHHHHTTSSCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhcCCCHHHHHHH
Confidence 124444443321 1222343466777766653 22333222 237778888888899999999
Q ss_pred HHHHHHHhcCChhhHHHHH----------hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000133 626 ASALAGIFETRKDLRESSI----------AVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 626 a~aL~~L~~~~~~~~~~~~----------~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~ 677 (2100)
|.++.+++...+ ..+. -...+..+..++..-+.+.......+++.+...
T Consensus 561 ~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 561 CDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 999999997422 2222 112333333444444444455555666665443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.07 E-value=1.1 Score=63.59 Aligned_cols=153 Identities=8% Similarity=0.034 Sum_probs=89.1
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCch
Q 000133 608 ETMIKILS--STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-----GSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 608 ~~Lv~lL~--s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
+.+-..+. +.+...++.|+++++.++.......+......+++.|..+... +.+.++..++.+++..+.-...
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~ 533 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 33334443 3578889999999999986433221222223355555554321 2233444577888876532111
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHH--------HHHcCcHHHHHHHHccCChhHHHHHH
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK--------AIAEEIILPATRVLCEGTISGKTLAA 752 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~--------~v~~~~v~~L~~ll~~~~~~~~~~Aa 752 (2100)
.. . +. ...++.|+..+.++++.|+..|+.|+.+++.+...... ..-+.++..|..++..-+.+......
T Consensus 534 ~~-~-~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~ 610 (1049)
T 3m1i_C 534 HW-N-FL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFY 610 (1049)
T ss_dssp CH-H-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHH
T ss_pred HH-H-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 11 1 11 23567777788888999999999999999854322111 11345556666666665555555666
Q ss_pred HHHHHHHhcCc
Q 000133 753 AAIARLLHSRK 763 (2100)
Q Consensus 753 ~aL~~l~~~~~ 763 (2100)
.++..+....+
T Consensus 611 eai~~ii~~~~ 621 (1049)
T 3m1i_C 611 KACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHcCC
Confidence 77777765444
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.06 E-value=1.2 Score=61.98 Aligned_cols=156 Identities=8% Similarity=0.024 Sum_probs=99.4
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCc
Q 000133 607 VETMIKILSS--TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-----GSECILVEASRCLAAIFLSVR 679 (2100)
Q Consensus 607 i~~Lv~lL~s--~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~v~~~aa~aL~~L~~~~~ 679 (2100)
++.+.+.+.+ .+...++++++|++.++.+..+..+...-..++|.|+.++.. ....++..++.+++..+.-..
T Consensus 453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~ 532 (1023)
T 4hat_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1023)
T ss_dssp HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 578999999999999998765444455556788889988753 222344467788887654221
Q ss_pred hhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHH--------HHHcCcHHHHHHHHccCChhHHHHH
Q 000133 680 ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK--------AIAEEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 680 ~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~--------~v~~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
... . + -...+..|++.+.++++.++..|++|+.+|+.+...... ..-+.++..+.......+.......
T Consensus 533 ~~~-~-~-L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~l 609 (1023)
T 4hat_C 533 AHW-N-F-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF 609 (1023)
T ss_dssp HCH-H-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred ccH-H-H-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111 1 1 123455556666778899999999999999854322111 1123455556666655666667788
Q ss_pred HHHHHHHHhcCccc
Q 000133 752 AAAIARLLHSRKID 765 (2100)
Q Consensus 752 a~aL~~l~~~~~~~ 765 (2100)
..|++.+....+..
T Consensus 610 yeai~~vi~~~~~~ 623 (1023)
T 4hat_C 610 YKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCCH
Confidence 88888888876654
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00017 Score=82.83 Aligned_cols=186 Identities=16% Similarity=0.087 Sum_probs=134.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCCh
Q 000133 407 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 486 (2100)
Q Consensus 407 ~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i 486 (2100)
.++.++++.+|..++..+ ....|..+++++++.|+..++.. +. .
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~---L~---------------~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYR---LP---------------R 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTT---SC---------------S
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHH---CC---------------H
Confidence 456788999999988743 12236678899999999988853 21 2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHH
Q 000133 487 PPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLT 566 (2100)
Q Consensus 487 ~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~ 566 (2100)
+.|..++.+++..+|..++..+ . .+.|..++++.++.++..++..+ . .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~l---~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQRI---P-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHHS---C-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHhc---C-------HHHHH
Confidence 4688889999999999887742 1 12456678888999999888732 1 12345
Q ss_pred HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 567 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 567 ~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
.++++.++.+|..+...+. .+.+..+++++++.+|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l~---------------------~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRLP---------------------EESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHSC---------------------GGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcCC---------------------HHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 6677888888887655411 23345678899999999998753
Q ss_pred CchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000133 647 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715 (2100)
Q Consensus 647 g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~ 715 (2100)
..+.|..++.+++..|+..++..++ .+.|..| .++++.||+.++..|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1356888899999999999888752 3456566 9999999999887664
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00029 Score=80.83 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=133.7
Q ss_pred HhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcH
Q 000133 449 SLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAV 528 (2100)
Q Consensus 449 ~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i 528 (2100)
.+++++++.++..++..| ....|..++.++++.+|..++..| . .
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------~------------~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------P------------R 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------C------------S
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------C------------H
Confidence 456889999999888632 134578888999999999888642 1 1
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHH
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 608 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~ 608 (2100)
+.|..++++.++.++..++..| . .+.|..++++.++++|..+...+. .+
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l------~----~~~L~~L~~D~d~~VR~~aA~~l~---------------------~~ 149 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL------P----LEQLEQMAADRDYLVRAYVVQRIP---------------------PG 149 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS------C----TGGGGGGTTCSSHHHHHHHHHHSC---------------------GG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC------C----HHHHHHHHcCCCHHHHHHHHHhcC---------------------HH
Confidence 4577888999999999888843 1 123556678888888887665211 12
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 000133 609 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA 688 (2100)
Q Consensus 609 ~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~ 688 (2100)
.+..+++++++.+|..++..+ . .+.|..++.+++..|+..++..+
T Consensus 150 ~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 150 RLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 344677899999999988751 1 13455778999999999888652
Q ss_pred CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHH
Q 000133 689 RDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAI 755 (2100)
Q Consensus 689 ~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL 755 (2100)
..+.|..++.++++.||..++..+. .+.|..+ ++++..+|..++..|
T Consensus 195 --~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 2356788899999999999988753 2455555 777777998887654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.053 Score=63.57 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=130.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+..+++-|.+++.+.++.+...|..+...+.+....++..+++..|++...+.+.+++..+++|+.++..+....+.. +
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv-v 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV-V 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH-H
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch-h
Confidence 445667777888888999999999966556889999999999999999999999999999999999997664322222 3
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcH-HHHHHHH----------cCcHHHHHHHHc---cCChhHHHHHH
Q 000133 687 VARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAIA----------EEIILPATRVLC---EGTISGKTLAA 752 (2100)
Q Consensus 687 ~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~-~~~~~v~----------~~~v~~L~~ll~---~~~~~~~~~Aa 752 (2100)
-....+..+..++.+....|...|...|..++...+ ...-+.. ..-+..|+..++ ..+.+++.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 356689999999999889999999999999984432 2222221 123788999998 56777899998
Q ss_pred HHHHHHHhcCccch---hHhhhhhccCcHHHHHHhhh
Q 000133 753 AAIARLLHSRKIDY---TITDCVNRAGTVLALVSFLE 786 (2100)
Q Consensus 753 ~aL~~l~~~~~~~~---~~~~~~~~~g~l~~li~~l~ 786 (2100)
.-+..++...+..+ ++.+.+...|.-..+.+.++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence 88888887665433 34444444443333333333
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.25 Score=57.95 Aligned_cols=146 Identities=14% Similarity=0.077 Sum_probs=109.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHH-h
Q 000133 404 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-A 482 (2100)
Q Consensus 404 ~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~-~ 482 (2100)
.+++-|.+.+.+.++.+...|..+-.....+...++..+|+..|+......+...+.++..+|.+|-. +......++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 35566667778889999999998555557888999999999999999999999999999999999984 666655555 4
Q ss_pred cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC----------CcHHHHHHHhh---cCChhHHHHHHHH
Q 000133 483 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESA----------DAVPALLWLLK---NGSANGKEIAAKT 549 (2100)
Q Consensus 483 ~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~~Aa~a 549 (2100)
...|..+..++.+....+...|...|..++..++.+...+.++ .-+..|+.+|+ +++..++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4578888889998889999999999999998766554433221 11456666665 3445555554443
Q ss_pred H
Q 000133 550 L 550 (2100)
Q Consensus 550 L 550 (2100)
+
T Consensus 281 I 281 (339)
T 3dad_A 281 I 281 (339)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=83.99 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=66.0
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEec-CCC----CCcccc-ccccC-CCccccc-ccee-ccccCCCCCeEEEEee
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTL-GNT----PPRQTK-IVSTG-PNPEWEE-SFAW-SFEIPPKGQKLHISCK 2047 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 2047 (2100)
.+|.|+|+|+++.++.. +...-+.++.+ |.+ ...+|| ||+++ .||+||| .|+| .+. .|.-..|.+.|+
T Consensus 676 ~~~~L~V~Visa~~L~~--~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~-~~el~~Lr~~V~ 752 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE--RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKIL-MPELASLRVAVM 752 (799)
T ss_dssp TCEEEEEEEEEEESCCS--SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEES-SGGGCEEEEEEE
T ss_pred eeeeEEEEEEeccccCc--cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEc-cCCccEEEEEEE
Confidence 36789999999999875 24445666666 522 234799 88765 8999999 6988 665 355569999999
Q ss_pred cCCccCCcccceEEEEEeeEE
Q 000133 2048 NKSKMGKSSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2048 ~~~~~~~~~~~~~~~~~~~~~ 2068 (2100)
+++ .+.+|.++|+++.+.
T Consensus 753 D~d---~d~iG~~~ipl~~L~ 770 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALN 770 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBC
T ss_pred EeC---CCccceEeeehhhcC
Confidence 985 677899999999875
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=95.83 E-value=2.1 Score=59.59 Aligned_cols=454 Identities=11% Similarity=0.036 Sum_probs=232.1
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCC---CHHHHHHHHHHHHHhccCCccc----HHHHHhcC
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS---SEQQQECSVALLCLLSNENDDS----KWAITAAG 484 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~v~~~A~~aL~nLs~~~~~~----~~~i~~~g 484 (2100)
.++..|..|-..|..+-.. + ++......++.++ ++.++..|+..|.+....-+.. ...-.+..
T Consensus 20 sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 3788888888888876654 2 4555666777654 6889999998888765422222 22333333
Q ss_pred ChHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCCh-hHHHHHHHHHHHHhcC---CC-
Q 000133 485 GIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHK---SD- 558 (2100)
Q Consensus 485 ~i~~Lv~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~aL~~L~~~---~~- 558 (2100)
.+..+.+.-. ....-+|.+.+.+|..+....-... -.+.++.|+.++.++++ ........+|..+... ..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 4444444211 2356788888888888875411111 12345555555554332 2223333333322211 00
Q ss_pred ----------------------CCcHHHHHHHhhc----CCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH
Q 000133 559 ----------------------TATISQLTALLTS----DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 612 (2100)
Q Consensus 559 ----------------------~~~i~~L~~lL~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~ 612 (2100)
+...+....+|.. .+++++..+.+|++......+... +.+.+-++.+..
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~-----i~~~~ll~~l~~ 240 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL-----IVNEPCMNLLYS 240 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH-----HHCHHHHHHHHH
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh-----hhcchHHHHHHH
Confidence 0012233333332 566677778888887766544332 233445777777
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCChh--hHHHHHhcCchHHHHHhhc--CCCHHHHHHHHHHHHHHhcC------Cc---
Q 000133 613 ILSSTKEETQAKSASALAGIFETRKD--LRESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLS------VR--- 679 (2100)
Q Consensus 613 lL~s~~~~~~~~Aa~aL~~L~~~~~~--~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~aa~aL~~L~~~------~~--- 679 (2100)
++.+ ++++..|+.+|..+.....+ ....++..-.+...+..+. ..+.+..+..++.+..++.. .+
T Consensus 241 ~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 241 FLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp HTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred HcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 7764 89999999999999875432 2112222111222222222 46666666555555443211 11
Q ss_pred --hh-HHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-----c----HHHHHHHHcCcHHHHHHHHccCCh--
Q 000133 680 --EN-REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-----S----EVSEKAIAEEIILPATRVLCEGTI-- 745 (2100)
Q Consensus 680 --~~-~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-----~----~~~~~~v~~~~v~~L~~ll~~~~~-- 745 (2100)
+. .+..-.-.+.++.++..+.+++.++-..+..-+..++.. . ......+-..+++.+.+-++++++
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 00 011011135788888889899988876665554444311 1 111222335666677777766432
Q ss_pred --------------hHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHH-hhh---hcccccchHhHHHHHHHHHHc
Q 000133 746 --------------SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVS-FLE---SASGSVATSEALDALAILSRS 807 (2100)
Q Consensus 746 --------------~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~-~l~---s~~~~v~~~~al~~L~~L~~~ 807 (2100)
+.|+... .|............+. .-...+.+++. .+. +.+=... |-++.+|..+++.
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~---~~~~~i~~~l~~~l~~~~~~~W~~~-EaaL~~l~~iaE~ 473 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS---YMYSAITSSLSTAATLSPENSWQLI-EFALYETYIFGEG 473 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH---HHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHTTTT
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH---HHHHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHhh
Confidence 1233333 3333332211110000 00012222222 121 1111122 6677777766543
Q ss_pred CCCCCCCCcccceeeccCCCchhhhhhhc-----cCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhh-
Q 000133 808 GGASGHVKPAWQVLAEFPKSITPIVSSIA-----DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVIS- 881 (2100)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~- 881 (2100)
-.+.....+ ...-..|..++-+.+.+. ..+|.+|..+.+++.||+. -|.........+++.++.
T Consensus 474 i~~~~~~~~--~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~--------~~~~~~~~l~~~L~~ll~~ 543 (980)
T 3ibv_A 474 LRGPDAFFN--EVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS--------FFDYESAAIPALIEYFVGP 543 (980)
T ss_dssp CCSGGGTBC--SSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG--------GGGTCCTTHHHHHHHHTST
T ss_pred ccccccccC--cccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH--------HHhcCchhHHHHHHHHhcc
Confidence 221000000 001123344444444544 6789999999999999943 333344455555555555
Q ss_pred ----cCCcceecchhhHHHHHhhh
Q 000133 882 ----CTNPKVKIGGAALLICAAKV 901 (2100)
Q Consensus 882 ----s~~~~~r~~~~~~~~~~~~~ 901 (2100)
++++.+|..|++++..+.+.
T Consensus 544 ~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 544 RGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp TTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred ccccCCChhHHHHHHHHHHHHHHH
Confidence 66788888888887777766
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0053 Score=81.96 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=65.7
Q ss_pred cCCCceeeeeccchhhhhhCCCcceEEEecCC-C-----CCccccccccC-CCcccccc-ceec-cccCCCCCeEEEEee
Q 000133 1977 LPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN-T-----PPRQTKIVSTG-PNPEWEES-FAWS-FEIPPKGQKLHISCK 2047 (2100)
Q Consensus 1977 i~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 2047 (2100)
.|+.|+|+|+.+.++... ...-+..+.+.. + ..++||||++| .||+|||. |+|. +. .|.-..|.+.|+
T Consensus 648 ~~~~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~-~pela~Lrf~V~ 724 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK--QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVV-LPDLAVVRIIVS 724 (816)
T ss_dssp CCEEEEEEEEEEECCCSS--CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEES-CGGGCEEEEEEE
T ss_pred cceEEEEEEEEcccCCCC--CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEcccc-CCCccEEEEEEE
Confidence 367899999999998753 334455555532 1 23479999875 99999998 9987 54 455579999999
Q ss_pred cCCccCCcccceEEEEEeeEEe
Q 000133 2048 NKSKMGKSSFGKVTIQIDRVVM 2069 (2100)
Q Consensus 2048 ~~~~~~~~~~~~~~~~~~~~~~ 2069 (2100)
+++ .+.+|.++|+++.+..
T Consensus 725 D~d---ddfiG~~~ipL~~L~~ 743 (816)
T 3qr0_A 725 EEN---GKFIGHRVMPLDGIKP 743 (816)
T ss_dssp ETT---SCEEEEEEEESTTCCC
T ss_pred ecC---CCeeeEEEEEHHHcCC
Confidence 974 6778999999998654
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0058 Score=82.03 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCceeeeeccchhhhhhCCCcceEEEecCC----C-CCccccccccC-CCccccc-cceec-cccCCCCCeEEEEeecC
Q 000133 1978 PGTLVVIIKRGNNMKQSVGNPSVYCKLTLGN----T-PPRQTKIVSTG-PNPEWEE-SFAWS-FEIPPKGQKLHISCKNK 2049 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 2049 (2100)
|..|+|+|+++.++... ...-+..+.+.. . ..++||||++| .||+|+| .|+|. +. -|.-..|.+.|+++
T Consensus 724 ~~~L~V~Visaq~L~~~--~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~-~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR--KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVV-LPTLASLRIAAFEE 800 (885)
T ss_dssp CEEEEEEEEEEESCCSS--CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEES-CGGGCEEEEEEEET
T ss_pred ceEEEEEEEEeccCccc--CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEE-cCCcCEEEEEEEcC
Confidence 33699999999998753 344555666532 1 13589999875 9999999 69998 54 45566999999998
Q ss_pred CccCCcccceEEEEEeeEE
Q 000133 2050 SKMGKSSFGKVTIQIDRVV 2068 (2100)
Q Consensus 2050 ~~~~~~~~~~~~~~~~~~~ 2068 (2100)
+ .+.+|.++|+++.+.
T Consensus 801 d---ddfiG~~~lpL~~L~ 816 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIR 816 (885)
T ss_dssp T---TEEEEEEEEETTTCC
T ss_pred C---ccEEeeEEEEHHHcC
Confidence 6 677899999998864
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.55 Score=54.00 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 686 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~ 686 (2100)
+|.|++-+.++.+.+|..+-..+..+....+. ..+.+.++..+.+.+.+++..++..+.++..... +
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G------~ 200 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG------I 200 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC------S
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC------C
Confidence 89999999999999999988888777653221 1367888889999999999999999998843211 1
Q ss_pred HhCCCh---HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 687 VARDAL---SPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 687 ~~~~~l---~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
....++ +.+.+++.+++.+||..|..++..+-
T Consensus 201 ~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 201 SPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp GGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 124578 99999999999999999998888664
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.33 Score=57.14 Aligned_cols=150 Identities=7% Similarity=0.078 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh-----hHHHHHhcCchHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKD-----LRESSIAVKTLWSVMK-LLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~-----~~~~~~~~g~v~~Lv~-lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
.+.+-..+.+.+..++..++.++..++..... ..........+|.|+. .+.+....++..+..++..++.....
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 44556678899999999999999988753211 1122233456788885 47888888888888888877543211
Q ss_pred hHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcHH-HHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHH
Q 000133 681 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEV-SEKAIAEEIILPATRVLCEGTISGKTLAAAAIAR 757 (2100)
Q Consensus 681 ~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~--~~~~-~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~ 757 (2100)
.. ..++.+...+.+.++.++..+...|..++. +... .....-..+++.+..++.+.+..+|..|...+..
T Consensus 137 ~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ 209 (278)
T 4ffb_C 137 IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE 209 (278)
T ss_dssp SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11 135667778889999999999999998872 2211 1112223566778888999999999999999998
Q ss_pred HHhcCc
Q 000133 758 LLHSRK 763 (2100)
Q Consensus 758 l~~~~~ 763 (2100)
+-+..+
T Consensus 210 ly~~~G 215 (278)
T 4ffb_C 210 IYKVTG 215 (278)
T ss_dssp HHTC--
T ss_pred HHHHhC
Confidence 876544
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.33 Score=54.02 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=103.3
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHH-HhhcCChhHHHHHHHHHHHHhc-CCCCCcHH
Q 000133 486 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLW-LLKNGSANGKEIAAKTLNHLIH-KSDTATIS 563 (2100)
Q Consensus 486 i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~aL~~L~~-~~~~~~i~ 563 (2100)
++....|..+...++|..|+..|..+ ... ...++.+.. +..+.++++++.++.++..++. ......++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~ 142 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP 142 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34444566677899999999988877 311 114556665 5567899999999999999985 44445788
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000133 564 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 643 (2100)
Q Consensus 564 ~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~ 643 (2100)
.+.....+++..+|..|.+.+...+..... .......+|.|..+..+++..+|+.-++.|..+++.+++....+
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTNRPYF------KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGGSTTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhccchh------hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 899999999999999988886544432110 01112247777778889999999999999999999988764443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=93.94 E-value=30 Score=48.07 Aligned_cols=223 Identities=15% Similarity=0.081 Sum_probs=124.8
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCcccc
Q 000133 55 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQGGAKDYVGS 133 (2100)
Q Consensus 55 ~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~~~ 133 (2100)
.+..++..+-+++.+.|..|-..|..+-+.+ ++++.+..+|.+ .++.+|..|+..|.+.-...-+.-
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L--- 96 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKIL--- 96 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGS---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhC---
Confidence 3455566666677888888888888775544 446666666644 578899999999998665211000
Q ss_pred cchhccCChHHHHHHhhccC------CCcchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHH
Q 000133 134 KIFSTEGVVPVLWEQLKNGL------KSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVC 206 (2100)
Q Consensus 134 ~~~~~~g~vp~L~~lL~~~~------~~~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~ 206 (2100)
..-...+.-..+++++.... ..++.+....+.++..+... -+..|. ..++-++.++++ ++.......
T Consensus 97 ~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 97 PRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHH
Confidence 00011122223444443311 12344445556666665422 123444 346677777754 445566677
Q ss_pred HHHHHHhhc--Cc------ch-----hhHHhh--hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCC
Q 000133 207 FLLACMMEE--DV------SV-----CSRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNG 271 (2100)
Q Consensus 207 ~~L~~L~~~--~~------~~-----~~~i~~--~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~ 271 (2100)
.+|..+... +- .. +..+.. ...+..+...|....+.++...+..+|..+..--+ -..+++.+-
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchH
Confidence 777766633 10 00 111111 22344444555555556777888888888775332 235667777
Q ss_pred hHHHH-HhhcCCCcchhhhhhhHHHHHHHHHHHHHhhC
Q 000133 272 IPAMI-NATIAPSKEFMQGEYAQALQENAMCALANISG 308 (2100)
Q Consensus 272 i~~Lv-~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~ 308 (2100)
++.++ ..+.. +.++..|+.+|..+..
T Consensus 249 l~~L~~~~L~~-----------~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 249 ISTLIYKFLNV-----------PMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHTSSS-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-----------hHHHHHHHHHHHHHHh
Confidence 77773 55532 5688999999998765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.93 E-value=1.1 Score=51.61 Aligned_cols=177 Identities=12% Similarity=0.152 Sum_probs=113.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh----hCCCCHHHHHHHHHHHHHhccCC--cccHH
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL----LGLSSEQQQECSVALLCLLSNEN--DDSKW 478 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l----L~s~~~~v~~~A~~aL~nLs~~~--~~~~~ 478 (2100)
+...|-+.|..-+..++..|......++. .+. ..+..+++. +.+.+..+...+..+|..+...- .+.+.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR---SLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44455566888888888888775544322 221 122223332 23668888877777776653110 11101
Q ss_pred HHHh-cCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 479 AITA-AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 479 ~i~~-~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
.-.+ .-.+|.|+.-++++.+.+|+.+-.++..++...+.. .+.+.+++.+++.+++++..++..+..+....
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 1111 126799999999999999999888887776532222 25678888999999999999988888774311
Q ss_pred CCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchH---HHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000133 558 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFE 634 (2100)
Q Consensus 558 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i---~~Lv~lL~s~~~~~~~~Aa~aL~~L~~ 634 (2100)
++....++ |.+..++.+.+..+|..|..++..+..
T Consensus 199 ------------------------------------------G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 199 ------------------------------------------GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp ------------------------------------------CSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------CCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 11112346 888888889999999999888887765
Q ss_pred C
Q 000133 635 T 635 (2100)
Q Consensus 635 ~ 635 (2100)
.
T Consensus 237 ~ 237 (266)
T 2of3_A 237 F 237 (266)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.25 Score=60.77 Aligned_cols=237 Identities=17% Similarity=0.120 Sum_probs=155.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--C-chHHHHHhhcC------CC---HHHHHHHHHHHHHH
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV--K-TLWSVMKLLDV------GS---ECILVEASRCLAAI 674 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~--g-~v~~Lv~lL~~------~~---~~v~~~aa~aL~~L 674 (2100)
...|+.-|.+++.++|.-|+.+|..+.+............ . ++..++-+.-+ ++ ..|+..||++|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 5667777889999999999999999886532100000000 1 23333322211 11 25899999999999
Q ss_pred hcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHH
Q 000133 675 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 754 (2100)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~a 754 (2100)
.+.++. ...+..|+..+..+..++|+-+...|.++ .+.... -+++++.++..|++.++++|.-||.+
T Consensus 256 -~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 256 -YPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp -TTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 776543 34455555556889999999999999998 221111 36789999999999999999999999
Q ss_pred HHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhh
Q 000133 755 IARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 833 (2100)
Q Consensus 755 L~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 833 (2100)
|.-+..... + ...+.-+-+.|...+ -....--.|..|+.|..-+... ...+.-++.|.-
T Consensus 323 LiPIA~p~~----l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----------~~dp~LVPRL~P 382 (800)
T 3oc3_A 323 LCHFPITDS----L------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----------SIPPERLKDIFP 382 (800)
T ss_dssp HTTSCCSST----H------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC----------CCCSGGGGGTGG
T ss_pred hhhhcchhh----H------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc----------ccChHHHHHHHh
Confidence 987761111 1 112222334444444 3444466788888887655421 112366777777
Q ss_pred hhccCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceec
Q 000133 834 SIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKI 889 (2100)
Q Consensus 834 ~l~~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~ 889 (2100)
.+.+.-+.||..+.+.|..+. .|.....+|..++=.++++++.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL-------------~~~~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS-------------EESIDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC-------------CHHHHHHHHHHHHHCSCHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHhCCcHHHHH
Confidence 999999999999999997772 4555566677776666665554
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.74 E-value=30 Score=49.36 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHH
Q 000133 67 SLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL--KSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPV 144 (2100)
Q Consensus 67 ~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL--~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~ 144 (2100)
+.+.|.+|-..|..+-+.++ +++.+...| .+.+..+|..|+..|.+.....-.. -..-.+.++=..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHH
Confidence 56678888888887754432 344444434 3557888999999999866411000 000011122233
Q ss_pred HHHHhhccC----CCcchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhh
Q 000133 145 LWEQLKNGL----KSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMME 214 (2100)
Q Consensus 145 L~~lL~~~~----~~~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~ 214 (2100)
+++.+.... ..++.++..+..++..++.. -+..|. ..++.+++++++ ++..+..+..+|..+..
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 555554321 13455777777777766532 124565 457788888876 56667788888887763
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.56 Score=55.16 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=126.3
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH--HHHHH-hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC--c-
Q 000133 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR--EVAAV-ARDALSPLVVLAGSPVLEVAEQATCALANLILD--S- 721 (2100)
Q Consensus 648 ~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~--~~~~~-~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~--~- 721 (2100)
-+| |-.-|.+.+-..+..+...+..+....+... ...+. -....+.+...+.+.+..+...++.++..++.. .
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 6677889999999999999998876543211 11011 123456667888999999999999999988732 1
Q ss_pred ---HHHHHHHHcCcHHHHHHH-HccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhH
Q 000133 722 ---EVSEKAIAEEIILPATRV-LCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEA 797 (2100)
Q Consensus 722 ---~~~~~~v~~~~v~~L~~l-l~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~a 797 (2100)
..........+++.|+.- +.+....++..|..++..+......... .+..++..+++.++.+. ..+
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~---------~~e~l~~~l~~Knpkv~-~~~ 159 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ---------SVELVIPFFEKKLPKLI-AAA 159 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH---------HHHHHGGGGGCSCHHHH-HHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH---------HHHHHHHHHhccCHHHH-HHH
Confidence 122233456777877764 6677777888888888877754433222 23345555665557776 888
Q ss_pred HHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHh
Q 000133 798 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLC 854 (2100)
Q Consensus 798 l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~ 854 (2100)
+..|..++...... .. ......+..+..+..++.+.++.||+.|..++..++
T Consensus 160 l~~l~~~l~~fg~~-~~----~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 160 ANCVYELMAAFGLT-NV----NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHHHHHTTT-TC----CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cC----CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89998887653221 01 111223456777888999999999999999987774
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.4 Score=59.02 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHh
Q 000133 1372 SPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL 1450 (2100)
Q Consensus 1372 ~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L 1450 (2100)
..+|+.|+.+|+.+-. ++. ..++..|+..+....-++|..++-.|..+ .+ -.. . -.+.++.++.-|
T Consensus 242 APVRETaAQtLGaL~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~-~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVE-D--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCC-C--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHH-H--HHHHHHHHHhhc
Confidence 4689999999988831 222 34455555555788899999999999988 22 111 0 245678888889
Q ss_pred ccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhccCCCCchhHhHHHHHHHHhhcCCCcccccccccCCChH
Q 000133 1451 HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIE 1530 (2100)
Q Consensus 1451 ~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~ 1530 (2100)
.+.+|+++..||++|...+ ........+..+...|.+.++=.......+..|..|...+.... .....++
T Consensus 309 ~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----~dp~LVP 378 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----IPPERLK 378 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----CCSGGGG
T ss_pred CCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----cChHHHH
Confidence 9999999999998885554 22335556666777777654323333445777888766664321 3347899
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchH-HHHHHhccCCHHHHHHHHHHHH
Q 000133 1531 PLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIG-PLIRVLGSGIHILQQRAVKALV 1593 (2100)
Q Consensus 1531 ~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~-~Lv~lL~s~~~~vr~~Al~AL~ 1593 (2100)
.|..+|...-+.||.+.+.+|..+... .++. ...++|=..+++++..+.++..
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL~~----------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLSEE----------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCCCH----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999999888721 1121 2223455789999999998886
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.12 E-value=2.3 Score=47.70 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcC----ChhhHHHHHHHHHHHhcC--cchHHHHHhhcChHHHHH
Q 000133 1292 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC----SMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVS 1365 (2100)
Q Consensus 1292 A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~----~~~~~~~a~~~L~~L~~~--~~~r~~~~~~~~i~~Lv~ 1365 (2100)
|+..|--+|++++.|..+ +++.+.-.|..+|...+ -+-+|-..+.+++.+... +++....-.++.+|..+.
T Consensus 76 aLaLlQcvAshpetr~~F---l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAF---LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHCTTTHHHH---HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHcCcchhhHH---HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 677778889999999988 57888888888887642 245777888888888754 455556667889999999
Q ss_pred HHhcCCchHHHHHHHHHHHhcccHHHHHHHHh--------cCCHHHHH-HhhcCCChhHHHHHHHHHHHhhcCCchhhHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1436 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~--------~g~i~~L~-~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~ 1436 (2100)
.++.+++-.+.-|...++++..++....-+.. ..++..++ .+.+++++++-+..+.|-..|+.+ +..++.
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHH
Confidence 99999999999999999998855443332211 11233333 344588999999999999999987 577777
Q ss_pred HHh
Q 000133 1437 MVK 1439 (2100)
Q Consensus 1437 i~~ 1439 (2100)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=89.02 E-value=3.4 Score=46.08 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=97.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH-HhhcCCcchHHHHHHHHHHHHh-ccCchhHHHHhhhccch
Q 000133 529 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA-LLTSDLPESKVYVLDALKSMLS-VVSFSDILREGSAANDA 606 (2100)
Q Consensus 529 ~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~-lL~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~i~~~~~ 606 (2100)
+..-.+.++....++-.|+.+|+.+ . .....++.+.. +..+++..|++.+..+++.++. ..+ ...
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~-~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-----------e~~ 140 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S-KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-----------KKA 140 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T-TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-----------TTT
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c-CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-----------HHH
Confidence 3344555667778899999988888 3 33455555655 5667889999999999887664 222 124
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 000133 607 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE 680 (2100)
Q Consensus 607 i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~ 680 (2100)
++.+.....+++..+|+.|...+.--+.. +... ..-.-++|.|..+..+++.-|++..+.+|..++...++
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 78888999999999999999887543322 1110 01112577888888999999999999999999877654
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=13 Score=43.71 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=150.8
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh----hHHHHHh-cCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD----LRESSIA-VKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~----~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
+...+.+..|+..|..-+-+.|+.++....++.+.... ..+-+.. ..++..|+..-...+ +...+-..|+-..
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHHHH
Confidence 34556788999999999999999999999999876432 2222322 234555555554433 4444444454443
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHH---cCcHHHHHHHHccCChhHHHHH
Q 000133 676 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIA---EEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
.+ ....+. +...+.+..+.+.+..++-++...|..++..|... +....+++. +......-+++.+++--+++++
T Consensus 152 r~-e~la~~-iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 152 RH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp TS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hh-HHHHHH-HhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 33 334444 56677788899999999999999999999999844 555566664 3566777788888877799999
Q ss_pred HHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcC
Q 000133 752 AAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSG 808 (2100)
Q Consensus 752 a~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~ 808 (2100)
.+-|++++-...+...+..|+....-+.-++.+|++.+..+. .+|..++--+..++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq-~EAFhVFKvFVANP 285 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQ-FEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchh-hhhhhheeeeeeCC
Confidence 999999999999988999999989999999999999888887 88888877664443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=86.32 E-value=14 Score=51.75 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=105.3
Q ss_pred chHHHHHHHhc----CCHHHHHHHHHHHHhh----hccchhhHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHH
Q 000133 55 AVPVLVSLLRS----GSLAVKIQAATVLGSL----CKENELRVKVLLGGCIPPLLGLL----KSSSAEGQIAAAKTIYAV 122 (2100)
Q Consensus 55 ~v~~L~~lL~~----~~~~v~~~aa~~L~~L----~~~~~~~~~i~~~g~i~~Lv~lL----~s~~~~~~~~A~~aL~~L 122 (2100)
.+..+..++.+ .++.++..+.-++++| |.++..+. ...++++...| ..++.+.+..+++||+|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~----~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34555566654 3445555555555554 43322211 12245555444 567777888999999999
Q ss_pred hccCCCCcccccchhccCChHHHHHHhhcc---CCC-cchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhH--cc
Q 000133 123 SQGGAKDYVGSKIFSTEGVVPVLWEQLKNG---LKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL--TL 196 (2100)
Q Consensus 123 s~~~~~~~~~~~~~~~~g~vp~L~~lL~~~---~~~-~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL--~s 196 (2100)
.. . ..++.|..++... ... ...++..|.++|+++....+... -+.+.++. ..
T Consensus 468 g~----p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~ 525 (1056)
T 1lsh_A 468 GQ----P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVA 525 (1056)
T ss_dssp TC----G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTT
T ss_pred CC----h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCC
Confidence 86 1 2467777776431 111 22377778999999986543322 24677777 45
Q ss_pred CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 000133 197 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 259 (2100)
Q Consensus 197 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~ 259 (2100)
.++++|..|+..|. ...+ ....+..+...+....+.++..-....|.+++...
T Consensus 526 e~~EvRiaA~~~Lm---~t~P-------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 526 IKSELRIRSCIVFF---ESKP-------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp SCHHHHHHHHHHHH---HTCC-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHH---HHCc-------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 67889988888772 2222 12346778888888777789988889999998743
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.59 E-value=0.23 Score=49.87 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=56.3
Q ss_pred ceEEEecCCCCC---ccc-cccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-----
Q 000133 2000 VYCKLTLGNTPP---RQT-KIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML----- 2070 (2100)
Q Consensus 2000 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 2070 (2100)
-+|++....... -|| .--++...|+|++.|+=.+. .|..|+|.|+.+.. +-+..|||+++++...
T Consensus 34 PY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~---~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 34 PYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN---KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC---SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred ceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE---CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 445444443322 334 33455679999999987766 78999999996555 6779999999999943
Q ss_pred cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2071 GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2071 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
|....-..|.| .|+.. +.++|
T Consensus 108 g~~e~WvdLeP---~Gkl~---v~i~~ 128 (138)
T 2enj_A 108 GKTEIWLELKP---QGRML---MNARY 128 (138)
T ss_dssp TCEEEEEECBS---SCEEE---EEEEE
T ss_pred CceEEEEeccc---CcEEE---EEEEE
Confidence 44444444555 44433 55555
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.54 E-value=33 Score=38.59 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred HHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcc--hHHHHHHHHHHHhccCCh-hhHHHHHhcCCHHHH
Q 000133 114 AAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGN--VVDNLLTGALRNLSTSTE-GFWAATVQAGGIDIL 190 (2100)
Q Consensus 114 ~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~--~v~~~a~~aL~nL~~~~~-~~~~~i~~~g~v~~L 190 (2100)
.|...|.-+++ +...|..|.++...-.|...|...++..+ .++-.+++.++.|...++ +...-+.+.+.||..
T Consensus 75 naLaLlQcvAs----hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 75 NALALLQCVAS----HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHH----CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHc----CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 34444556666 44457778888887778888887766654 366677788888875443 333335688999999
Q ss_pred HHhHccCCHHHHHHHHHHHHHHhhcCcch------hhHHhh-hchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhH
Q 000133 191 VKLLTLGQSSTQAHVCFLLACMMEEDVSV------CSRVLA-ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 263 (2100)
Q Consensus 191 v~lL~s~~~~v~~~a~~~L~~L~~~~~~~------~~~i~~-~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~ 263 (2100)
++.++.++.-.+..|+.++.++..++..- .+.+.. ...+..++.-+......-+.+....+-..|+. ++..+
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar 229 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAR 229 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHH
Confidence 99999999999999999999888665521 111111 12333444444444446677777777777776 56555
Q ss_pred HHHH
Q 000133 264 REIA 267 (2100)
Q Consensus 264 ~~i~ 267 (2100)
.++.
T Consensus 230 ~aL~ 233 (268)
T 2fv2_A 230 EALR 233 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.88 E-value=1.6e+02 Score=41.92 Aligned_cols=232 Identities=12% Similarity=0.032 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHH--hcCCHHHHHHHHHHHHhhhc
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL--RSGSLAVKIQAATVLGSLCK 83 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL--~~~~~~v~~~aa~~L~~L~~ 83 (2100)
.....+.++++.+.++.+++..|..|-..|..+.+..+ +...+...| .+.+..+|..|+.+|-+..+
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~ 76 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVK 76 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45677888888887766666678889888888765433 223333333 45577899999999998763
Q ss_pred c------chhhHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCC
Q 000133 84 E------NELRVKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 154 (2100)
Q Consensus 84 ~------~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~ 154 (2100)
. ++.|..+ +...+..+...-.. .+.-++...+.++..+.....++. . ...++.|+.++..
T Consensus 77 ~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~--W-----p~ll~~L~~~~~~--- 145 (1204)
T 3a6p_A 77 FRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH--W-----PDMLIELDTLSKQ--- 145 (1204)
T ss_dssp HSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT--C-----TTHHHHHHHHHHT---
T ss_pred HhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc--c-----hHHHHHHHHHhcC---
Confidence 2 2233333 22223322222111 346677778888888877322211 1 3567777777754
Q ss_pred CcchHHHHHHHHHHHhccC---C---hhhHH-----HHHhcCCHHHHHH----hHcc-------------------CCHH
Q 000133 155 SGNVVDNLLTGALRNLSTS---T---EGFWA-----ATVQAGGIDILVK----LLTL-------------------GQSS 200 (2100)
Q Consensus 155 ~~~~v~~~a~~aL~nL~~~---~---~~~~~-----~i~~~g~v~~Lv~----lL~s-------------------~~~~ 200 (2100)
++.....+..+|..++.+ . ...++ .+.+. ++.++. ++.+ ++..
T Consensus 146 -~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (1204)
T 3a6p_A 146 -GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCR 222 (1204)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHH
Confidence 223344566777777532 0 01111 12222 334433 3322 1223
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhh--chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC--hHhHHHHH
Q 000133 201 TQAHVCFLLACMMEEDVSVCSRVLAA--DATKQLLKLLGSGNEASVRAEAAGALKSLSDHC--KDARREIA 267 (2100)
Q Consensus 201 v~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~--~~~~~~i~ 267 (2100)
+...+..++.+....-+ ...+.+. ..++.+..++.. .+++..|+.+|..+.... ++.+..+.
T Consensus 223 l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 223 VGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp HHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred HHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 44555555543332221 1222232 266777766553 368999999999998744 44444333
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=84.71 E-value=50 Score=46.17 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=110.6
Q ss_pred cCcHHHHHHHHhcC----CHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhh----ccCChhhHHHHHHHHHHhhc
Q 000133 1230 FAAVSQLVAVLRLG----GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEIL----NTGLEREQHAAIAALVRLLS 1301 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~----~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL----~~~~~~~~~~A~~aL~~La~ 1301 (2100)
...+..+..++.++ ++..|..+..++++|....-..........++++.+.| ...+.+.+..++.+|+|++.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 34667777777653 34456667777777643111000112234466666554 45555566669999999992
Q ss_pred CCchhhHHHHhhhcchhHHHHHHHhhc----C--ChhhHHHHHHHHHHHhcCcchHHHHHhhcChHHHHHHHh--cCCch
Q 000133 1302 ENPSRALAVADVEMNAVDVLCRILSSN----C--SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSP 1373 (2100)
Q Consensus 1302 ~~~~~~~~~~~v~~gal~~L~~lL~~~----~--~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~Lv~lL~--~~~~~ 1373 (2100)
..+++.|.+++... . ...++..|..+|..+.... ....-+.+..+.. ..+++
T Consensus 470 -------------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-------p~~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 470 -------------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------PRKVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp -------------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------HHHHHHHHHHHHHCTTSCHH
T ss_pred -------------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-------hHHHHHHHHHHhcCCCCChH
Confidence 34677788887531 1 2346667777777665321 1123345677774 46778
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhc-CCChhHHHHHHHHHHHhhcCCchhhHHH
Q 000133 1374 AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKDRPSCKLEM 1437 (2100)
Q Consensus 1374 ~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~vr~~A~~aL~~La~~~~~~k~~i 1437 (2100)
+|..|+..|..-.-+.. .+..+...+. +.+..|+......|.+++.....+...+
T Consensus 530 vRiaA~~~Lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~l 585 (1056)
T 1lsh_A 530 LRIRSCIVFFESKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDV 585 (1056)
T ss_dssp HHHHHHHHHHHTCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHHHHHCcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 99999988876543221 2556666666 5889999999999999998864444443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=84.33 E-value=3.1 Score=51.00 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPAT 737 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~ 737 (2100)
.++...++-|++-|.....+.++.... ++..++.|..+.+..+|.+|...|..++.+ +. -..+...|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~------Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-----i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS------AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-----LPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH------HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-----hhhHHHHHH
Confidence 346789999999999999988876554 789999999999999999999999999876 32 257889999
Q ss_pred HHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHH
Q 000133 738 RVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILS 805 (2100)
Q Consensus 738 ~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~ 805 (2100)
++|+.++.......-++|..+++..+ .+++.++...+.+.++ ..++.++..|..-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e-~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGED-IVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCH-HHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccch-HHHHHHHHHHHHHH
Confidence 99999998888888889999987655 4566677777776554 44488888887553
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=84.09 E-value=0.28 Score=48.55 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred cccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEEEEEeeEEee-----cccccceeecC
Q 000133 2015 KIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVML-----GAVAGEYTLLP 2081 (2100)
Q Consensus 2015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 2081 (2100)
.--++...|+|++.|+=.+. .|..|+|.|+.+.. +-+..|||+++++... |....-..|.|
T Consensus 48 ~~K~kT~~P~Wne~Fd~~V~---~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP 113 (126)
T 1yrk_A 48 VQKKPTMYPEWKSTFDAHIY---EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP 113 (126)
T ss_dssp ECCSCCBCCCTTCEEEEECC---TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS
T ss_pred cccCCCCCcCccceEEeeee---CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc
Confidence 44456789999999987766 78999999996555 6679999999999843 34433444544
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.53 E-value=8.9 Score=45.11 Aligned_cols=118 Identities=13% Similarity=-0.015 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHhhccCccchHHHHhC--CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 412 ATNEVQEELVRALLKLCNNEGSLWRALQGR--EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 412 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
..+..+..+++++.|+..+. ..++.+... ..++.+...+.+++..++..++..+.|++.........-.....+..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 35667999999999998873 445554432 234566666667799999999999999975211100000001123334
Q ss_pred HHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHH
Q 000133 490 VQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 530 (2100)
Q Consensus 490 v~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 530 (2100)
.++++ ..+.+...++..+|++|...+++.+.....-|+...
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~ 280 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQ 280 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHH
Confidence 44443 348899999999999999765554444434444333
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.29 E-value=37 Score=39.84 Aligned_cols=172 Identities=10% Similarity=0.046 Sum_probs=96.9
Q ss_pred HHHHHHHhhcCHHHHhhhcccCcHHHHH----HHHh-cCCHHHHHHHHHHHHHhhcchhhhhhhhh--cCChHHHHHhhc
Q 000133 1210 ATDLLGILFSSAEIRRHESAFAAVSQLV----AVLR-LGGRGARYSAAKALESLFSADHIRNAESA--RQAVQPLVEILN 1282 (2100)
Q Consensus 1210 ~~~ll~~l~~~~~~~~~~~~~~al~~Li----~~L~-~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~--~~~i~~Lv~lL~ 1282 (2100)
+-++++++..++.+.......+.-..++ ..+. .+.+..+..+.+.+.|++.....+..+.. ...++.+...+.
T Consensus 122 vLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~ 201 (304)
T 3ebb_A 122 ALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKS 201 (304)
T ss_dssp HHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGS
T ss_pred HHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555544333222222333 3332 23456799999999999998888776664 234455555555
Q ss_pred cCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchHHHHHhhcChHH
Q 000133 1283 TGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEP 1362 (2100)
Q Consensus 1283 ~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r~~~~~~~~i~~ 1362 (2100)
+.....+.+++..+.|++......... . -....+..+..++....|.+....++.++++|.....-...+.+.-.+..
T Consensus 202 ~~nknl~iA~ATl~~NlAv~~~~~~~~-~-~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~ 279 (304)
T 3ebb_A 202 GSNKNIHIALATLALNYSVCFHKDHNI-E-GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDS 279 (304)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSCCH-H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHhhcCCc-h-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHH
Confidence 555666777888899998632111100 0 01124556666676666778888888899998865443334444434444
Q ss_pred HHHHHhcC-CchHHHHHHHHHH
Q 000133 1363 LVSLLVTE-FSPAQHSVVRALD 1383 (2100)
Q Consensus 1363 Lv~lL~~~-~~~~~~~A~~aL~ 1383 (2100)
.+..+.+. .+.....+++.+.
T Consensus 280 ~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 280 QIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHH
Confidence 44444443 3444444444443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=82.76 E-value=8.1 Score=47.41 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHH
Q 000133 11 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVK 90 (2100)
Q Consensus 11 v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~ 90 (2100)
+...-..+...+.++.+|+-|...+..+.+.-..... .++..++.++.+++..+|.+|.+.|-.+|++ +.-.+
T Consensus 28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k 100 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR 100 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh
Confidence 4444555555666778888888888888876554333 3688999999999999999999999999988 44344
Q ss_pred HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHH
Q 000133 91 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 163 (2100)
Q Consensus 91 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a 163 (2100)
+ ...|+.+|..+++......-.+|..+-.. | ..+.+..|+..+..+ ++.+++.+
T Consensus 101 i-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~---D--------pk~tl~~lf~~i~~~---~e~~Rer~ 154 (507)
T 3u0r_A 101 V-----ADILTQLLQTDDSAEFNLVNNALLSIFKM---D--------AKGTLGGLFSQILQG---EDIVRERA 154 (507)
T ss_dssp H-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHH---C--------HHHHHHHHHHHHHHS---CHHHHHHH
T ss_pred H-----HHHHHHHHhccchHHHHHHHHHHHHHHhc---C--------hHHHHHHHHHHHccc---chHHHHHH
Confidence 4 66789999998888777777777776651 1 234555566665553 23455443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=94 Score=36.50 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=137.6
Q ss_pred hhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCch-hhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhc
Q 000133 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPS-RALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346 (2100)
Q Consensus 1268 i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~-~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~ 1346 (2100)
+...+.+..|+..|..-+-+.++.+.....++-..... +...+.-+.. --+.|.-++....+.++.-.+-.+|+...+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 44557889999999998999999988877777653221 1111000111 122222223333455677777778888888
Q ss_pred CcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhc---CCHHHHHHhhcCCChhHHHHHHHH
Q 000133 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAH---GAVIPLVGLLYGRNYMLHEAISRA 1422 (2100)
Q Consensus 1347 ~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~---g~i~~L~~lL~~~~~~vr~~A~~a 1422 (2100)
++.+...+-....+-.+...++.++-++-..|...+..+.. ........... .++...-.+|.+++.-+||.++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 88777777777777788888888888888888888887773 22222222221 246677789999999999999999
Q ss_pred HHHhhcCCchhhHHHHh----cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccC
Q 000133 1423 LVKLGKDRPSCKLEMVK----AGVIESVLDILHEAPDFLCSAFAELLRILTNNAG 1473 (2100)
Q Consensus 1423 L~~La~~~~~~k~~i~~----~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~ 1473 (2100)
|+.+--++ .+...|.. ..-+..+..+|.+....++-+|-.++.....++.
T Consensus 233 LgelLldr-~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 233 LGELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCc-hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999885 66666643 6677888889998888877776655544444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2100 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 4e-25 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-17 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-10 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-24 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-21 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-14 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 9e-17 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-15 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 5e-12 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-11 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-04 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-13 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 8e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 8e-07 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 6e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-11 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-08 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-05 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-04 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 8e-08 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 1e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 6e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-07 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-06 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-06 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 4e-04 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 6e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 7e-04 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (271), Expect = 4e-25
Identities = 72/488 (14%), Positives = 141/488 (28%), Gaps = 66/488 (13%)
Query: 56 VPVLVSLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIA 114
+P V L S + A + C ++ + +V G I L+ LL+S + Q A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 115 AAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 174
AA + + + + + L+ + LTG L NLS++
Sbjct: 64 AAGALRNLVFRSTTN---KLETRRQNGIREAVSLLRR--TGNAEIQKQLTGLLWNLSSTD 118
Query: 175 EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 234
+ A + +L + + S
Sbjct: 119 --ELKEELIADALPVLADRVIIPFSGWCDG---------------------------NSN 149
Query: 235 LLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQA 294
+ + V A G L++LS + S I +++
Sbjct: 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV---QNCVAASRCDDK 206
Query: 295 LQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALAS-------------AL 341
EN MC L N+S L + + + LE + A + S L
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266
Query: 342 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA 401
++ + + +T +N E AL +L + L +
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326
Query: 402 KR------LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS- 454
+ L+ ++V L + + + G + + LL
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHT 384
Query: 455 -----SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASIL 508
SE + + L ++ + ++ + S S KA E + +L
Sbjct: 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444
Query: 509 RNLCNHSE 516
++ + E
Sbjct: 445 SDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (207), Expect = 3e-17
Identities = 68/428 (15%), Positives = 139/428 (32%), Gaps = 43/428 (10%)
Query: 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVL 224
+++ E Q GGI LV LL + Q L ++ +
Sbjct: 24 YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83
Query: 225 AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK 284
+ ++ + LL A ++ + G L +LS + IA + +P + + I P
Sbjct: 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFS 141
Query: 285 EFMQGEYAQA-------LQENAMCALANISGGLSN---------VISSLGQSLESCSSPA 328
+ G + + NA L N+S + +I SL +++C + +
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201
Query: 329 QVADTLGALASALMIYDSK----------AESTKPSDPLIVEQTLVNQFKPRLPFLVQER 378
+ D ++ S + + E++ F + ++
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261
Query: 379 TIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 438
L NP S L +S+A R + L+ + + E L+ L +
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 439 QGRE------GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 492
+ G+ + LL + +LL +S + + P + ++
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS-RHPLLHRVMGNQV-FPEVTRL 379
Query: 493 LESG------SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEI 545
L S S + +RNL + S+ + ++ L ++ S E
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439
Query: 546 AAKTLNHL 553
A L+ +
Sbjct: 440 ARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (176), Expect = 2e-13
Identities = 55/449 (12%), Positives = 126/449 (28%), Gaps = 45/449 (10%)
Query: 1321 LCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVR 1380
+ LSS A + F + + V + LV LL + Q +
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 1381 ALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1439
AL LV + V LL + L+ K E++
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 1440 AGVIESVLDIL----------------HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKV 1483
+ ++ P+ +A L + + +AG + + +
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186
Query: 1484 VEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAV 1543
++ L + +++ + +L + R D + + +
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246
Query: 1544 QQLAAELLSHLLLEEQLQKDPVTQ------------QVIGPLIRVLGSG----IHILQQR 1587
+ ++ P + I + ++G
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306
Query: 1588 AVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE--- 1644
A++ L + + +++ G+ E + ++ + + L S +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366
Query: 1645 FYLEVPVAVLVRLLRSG------SEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLE 1698
+ RLL S SE + + + L + A+ S + ++
Sbjct: 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426
Query: 1699 LLRSHQCE---ETAARLLEVLLNNGKIRE 1724
L RS E A LL + ++ +++
Sbjct: 427 LCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 1e-12
Identities = 59/461 (12%), Positives = 134/461 (29%), Gaps = 22/461 (4%)
Query: 1403 PLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFA 1462
V L ++ + + S K ++ + G I ++D+L + A A
Sbjct: 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Query: 1463 ELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYS 1522
LR L + K + + + L R + Q +L N+ + + +
Sbjct: 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125
Query: 1523 LTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIH 1582
A+ L + P + + + DP +R L S
Sbjct: 126 ---ADALPVLADRVIIPFSGWCDGNSNMSREV-------VDPEVFFNATGCLRNLSSADA 175
Query: 1583 ILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFS 1642
+Q I K + L + + A V + Q
Sbjct: 176 G-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234
Query: 1643 SEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1702
+ S+ + + + L E + + + S AI L L+
Sbjct: 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294
Query: 1703 HQCEETAARLLEVLLNNGKI---------RESKATKSAILPLSQYLLDPQTQAQQARLLA 1753
+ + T L N + + + +++ L + ++
Sbjct: 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354
Query: 1754 TLALGDLFQNEGLARSADAVSACRALVN-VLEEQPTEEMKVVAICALQNLVMYSRSNKRA 1812
+ + + R L + +E++ A ++NL+ +
Sbjct: 355 LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414
Query: 1813 VAEAGGVQVVLDLIGSSDPETSVQAAMFV-KLLFSNHTIQE 1852
+ + +++L SS + +AA + ++S+ +Q
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 2e-12
Identities = 66/452 (14%), Positives = 134/452 (29%), Gaps = 42/452 (9%)
Query: 444 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKED 503
I + L E+ Q + +++ +K + GGI LV +L S + ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 504 SASILRNLCNHSEDIRACVESADAVPAL-------------------LWLLKNGSANGKE 544
+A LRNL S + + + LW L + +E
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 545 IAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD--------- 595
+ A L L + V L +S +D
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 596 ------ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTL 649
++ A K + + S A + + L ++ T
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 650 WSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VLAGSPVLEVAE 708
S S+ ++ C + + DA+ + ++ S E
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG-WLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 709 QATCALANLILDSEVSEKAIAEEIIL--PATRVLCEGTISGKTLAAAAIARLLHSRKIDY 766
AL NL + +++ I L + SG + + A LL +
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362
Query: 767 TITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPK 826
+ + + L S +G+ + SE + + A + + + A Q +
Sbjct: 363 LLHRVMGNQV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS--S 419
Query: 827 SITPIVSSIADA-TPLLQDKAIEILSRLCRDQ 857
+ I++ + +P + A +LS + +
Sbjct: 420 MLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 2e-10
Identities = 55/453 (12%), Positives = 125/453 (27%), Gaps = 28/453 (6%)
Query: 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVA 707
T+ ++ L E + + ++ + LV L SP V
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ-QVYQLGGICKLVDLLRSPNQNVQ 61
Query: 708 EQATCALANLILDSEVSEKAIAEEIILPATRVLCE--GTISGKTLAAAAIARLLHSRKID 765
+ A AL NL+ S ++ + + L G + + L + ++
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHV---KPAWQVLA 822
+ ++ F G+ S + + + G ++ Q +
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 823 EFPKSITPIVSSI--ADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVI 880
+ I +++ + A DK++E + + L EV + AR
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 881 SCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGN 940
+ K + K+ + L + L ++ L +
Sbjct: 242 T-----EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296
Query: 941 DDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMD 1000
D + + G S + + G +V A +
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356
Query: 1001 VLT---------------DRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHA 1045
++ + S ED C + ++ + + +
Sbjct: 357 NMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYF 416
Query: 1046 TMKAIPILANLLKSEESANRYFAAQAVASLVCN 1078
+ + + NL +S S AA+ + S + +
Sbjct: 417 SSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-08
Identities = 56/466 (12%), Positives = 113/466 (24%), Gaps = 30/466 (6%)
Query: 777 TVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA 836
T+ V +L S + + QV I +V +
Sbjct: 3 TIPKAVQYLSSQDEKY-QAIGAYYIQHT-----CFQDESAKQQVYQL--GGICKLVDLLR 54
Query: 837 DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLI 896
+Q A L L T I + N +++ LL
Sbjct: 55 SPNQNVQQAAAGALRNLVFRSTTN--KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112
Query: 897 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDD--KEAISIYRYTSE 954
+ + + + A + + ++ R + + A R S
Sbjct: 113 NLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172
Query: 955 EARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFT 1014
+ + +I ++L ++ +A K V + L+ R+ +
Sbjct: 173 ADAGRQTMRNYSGLI--DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230
Query: 1015 QMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVAS 1074
+ + + D + + +P K A + +
Sbjct: 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290
Query: 1075 LVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLL-----------DLSEEFALVRYP 1123
L+ + L S + Q + L + V
Sbjct: 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350
Query: 1124 DQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAP----FLALGFLIQLAKDCP 1179
L + R + + P + LL A + L P
Sbjct: 351 GASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
Query: 1180 SNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRR 1225
+ L + EAA LL ++SS E++
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (263), Expect = 6e-24
Identities = 83/554 (14%), Positives = 174/554 (31%), Gaps = 37/554 (6%)
Query: 2 EDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVS 61
+D + ++ + + L V K + + +L +E + A+ Q V +V
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNK--AAVMVHQLS-KKEASRHAIMRSPQMVSAIVR 66
Query: 62 LLR-SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY 120
++ + + A L +L E + + G IP L+ +L S A T++
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 121 AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 180
+ G + + L + + T L+ L+ +
Sbjct: 127 NLLL---HQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAYGNQESKLI 180
Query: 181 TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 240
+ +GG LV ++ + ++ S ++ A + L L +
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 241 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAM 300
+ + L++LSD + ++ + G + N
Sbjct: 241 Q-RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299
Query: 301 CALANI-SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIV 359
+ GG+ ++ ++ ++ + L L S + + + L V
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Query: 360 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEE 419
L++ + T+ + +L P L A LV L+ A + Q
Sbjct: 360 VVKLLHPPSHWPL---IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 420 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 479
+ E G+ E+ E L +L+ + ++
Sbjct: 417 TSMGGTQQQFVE--------------------GVRMEEIVEGCTGALHILARD-VHNRIV 455
Query: 480 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 539
I IP VQ+L S + +A +L L ++ +E+ A L LL + +
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRN 514
Query: 540 ANGKEIAAKTLNHL 553
AA L +
Sbjct: 515 EGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.7 bits (241), Expect = 3e-21
Identities = 86/585 (14%), Positives = 180/585 (30%), Gaps = 77/585 (13%)
Query: 1262 DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVL 1321
++ +AE A +A+ L ++LN + + A + +L + SR + +M V +
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM--VSAI 64
Query: 1322 CRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRA 1381
R + + +E A
Sbjct: 65 VRTMQNTNDVETARCTAG-----------------------------------------T 83
Query: 1382 LDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAG 1441
L L + + G + LV +L + L L + K+ + AG
Sbjct: 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
Query: 1442 VIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQ 1501
++ ++ +L++ + + L+IL +K A + + R+
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203
Query: 1502 HSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ 1561
+ +VL + + ++ L L P+ + Q L + L +
Sbjct: 204 WTTSRVLKVLSVCSSNKPAI--VEAGGMQALGLHLTDPSQRLVQNCLWTLRN--LSDAAT 259
Query: 1562 KDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADP 1621
K + ++G L+++LGS + A L ++ V + ++
Sbjct: 260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319
Query: 1622 SLPH--------ALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNAL 1673
+ S + L + V+V+LL S +I + L
Sbjct: 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379
Query: 1674 LVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAIL 1733
+ + + + E GAI L++LL + + +
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRA---------------HQDTQRRTSMGGTQQ 424
Query: 1734 PLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKV 1793
+ + + L LA N + R + + V +L P E ++
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTI---PLFVQLL-YSPIENIQR 478
Query: 1794 VAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAA 1838
VA L L + A+ G + +L+ S + + AA
Sbjct: 479 VAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (207), Expect = 5e-17
Identities = 81/550 (14%), Positives = 157/550 (28%), Gaps = 38/550 (6%)
Query: 1048 KAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLG-CADAD 1106
+AIP L LL E+ AA V L + + ++ + D +
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 1107 VQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFL 1166
L L + + IPALV +L F
Sbjct: 76 TA-------RCTA------GTLHNLSHHREGLLAIFKSGGIPALVKMLG--SPVDSVLFY 120
Query: 1167 ALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRH 1226
A+ L L K+ + AG L+ + L+ L + + + E +
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180
Query: 1227 ESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLE 1286
A LV ++R + + S + + T
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 1287 REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346
+ +R LS+ ++ + + V +L + + A L +
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTCN 296
Query: 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVG 1406
N + + V +E LV ++ + A H
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDI------------TEPAICALRHLTSRHQEA 344
Query: 1407 LLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLR 1466
+ LH + + L ++ + L + AP A L++
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404
Query: 1467 ILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSH 1526
+L + ++ + F+ R E + L + R +
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRME---EIVEGCTGALHILARDVHNRI--VIRGL 459
Query: 1527 QAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1586
I + LL SP +Q++AA +L L +++ + + PL +L S +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519
Query: 1587 RAVKALVSIA 1596
A L ++
Sbjct: 520 YAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (203), Expect = 1e-16
Identities = 90/544 (16%), Positives = 162/544 (29%), Gaps = 40/544 (7%)
Query: 1143 SRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGP 1202
+ +AIP L LL + A + QL+K S +M + A+ + +
Sbjct: 15 ATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 1203 QDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSAD 1262
T L L E + LV +L + A L +L
Sbjct: 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132
Query: 1263 HIRNAESARQ-AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVL 1321
+Q +V +LN + L L N L + L
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL--IILASGGPQAL 190
Query: 1322 CRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRA 1381
I+ + +L + + VL + + + A ++ L L + +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 1382 LDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAG 1441
L L D + G + LV LL + + + L L + K+ + + G
Sbjct: 251 LRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308
Query: 1442 VIESVLDILHEAP------DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE 1495
IE+++ + A + A L + + LL
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368
Query: 1496 FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL 1555
P + + ++ N+ P A AI L+ LL Q+ + +
Sbjct: 369 HWPL-IKATVGLIRNLALCPANHAPL--REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 1556 LEEQLQKDPVTQQVIGPL---IRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTEL 1612
E ++ + + + G L R + + I I + V + L P E + L
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL-LYSPIENIQRVAAGVL 484
Query: 1613 SKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNA 1672
++ D A+ A A L LL S +EG +
Sbjct: 485 CELAQ--DKEAAEAIEAEGA------------------TAPLTELLHSRNEGVATYAAAV 524
Query: 1673 LLVL 1676
L +
Sbjct: 525 LFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (192), Expect = 3e-15
Identities = 107/603 (17%), Positives = 191/603 (31%), Gaps = 85/603 (14%)
Query: 166 ALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLA 225
A+ NL + A + I L KLL ++ + +++ S + + +
Sbjct: 1 AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 226 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKE 285
+++ + + N+ AG L +LS H ++ I S GIPA++ +P
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 286 FMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 345
+ A+ L N + A LA L
Sbjct: 117 ---------VLFYAITTLHN------------------LLLHQEGAKMAVRLAGGLQKMV 149
Query: 346 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLL 405
+ T I L + S + L
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIIL-------------------ASGGPQAL 190
Query: 406 VGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVAL 465
V ++ T E +LK+ + S A+ G+Q L L S++ + +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 466 LCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESA 525
L LS D + G + LVQ+L S +A IL NL ++ + V
Sbjct: 251 LRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 526 DAVPALLWLLKNGSANGK--EIAAKTLNHLIHKSDTATISQLTALLTSDLP--------E 575
+ AL+ + E A L HL + A ++Q L LP
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367
Query: 576 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 635
S ++ A ++ ++ A+ ++++L ++TQ +++
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT----- 422
Query: 636 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPL 695
+ V E I+ + L L+ + + + +
Sbjct: 423 ---------------QQQFVEGVRMEEIVEGCTGALHI--LARDVHNRIVIRGLNTIPLF 465
Query: 696 VVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAI 755
V L SP+ + A L L D E +E AE P T +L T AAA +
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
Query: 756 ARL 758
R+
Sbjct: 526 FRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.9 bits (187), Expect = 1e-14
Identities = 77/521 (14%), Positives = 174/521 (33%), Gaps = 36/521 (6%)
Query: 1480 AAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL-DS 1538
A + + L LL + + A ++ + + R + S Q + ++ + ++
Sbjct: 15 ATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT 71
Query: 1539 PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALT 1598
+ A L +L + I L+++LGS + + A+ L ++ L
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 1599 ---WPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLV 1655
+ GG+ ++ ++ + + + + + LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 1656 RLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEV 1715
++R+ + ++ + + +L + S ++ A+ E+G ++AL L L +
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 1716 LLNNGKIRESKATKSAILPLSQYLLD--PQTQAQQARLLATLALGDLFQNEGLARSADAV 1773
+ + + + + L Q L A +L+ L + + +
Sbjct: 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 1774 SACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPET 1833
+ R ++ + + E + A+ L + + + AV G+ VV+ L+
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 1834 SVQAAMFVKLLFSNHTIQEY-----------------ASSETVRAITAAIEKELWATGTV 1876
++A + + + A +T R + ++ + G
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Query: 1877 NEEYLK-ALNALFN--NFPRLRATEPATLSIPHLVTALKTGSEATQEAALDALFLLRQAW 1933
EE ++ AL R +IP V L + E Q A L L Q
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-- 489
Query: 1934 SACPAEVSKAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLL 1974
+ A+++ A A L L+ S A +L
Sbjct: 490 -----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (177), Expect = 2e-13
Identities = 80/530 (15%), Positives = 164/530 (30%), Gaps = 34/530 (6%)
Query: 391 LLSIKLENSEAKR---LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 447
L++ + + A R L L+ V + + +L E S ++ + + +
Sbjct: 5 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64
Query: 448 ISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSAS 506
+ + + + C+ L LS + + AI +GGIP LV++L S + +
Sbjct: 65 VRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123
Query: 507 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLT 566
L NL H E + V A + ++ LL + I L L + + + + L
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183
Query: 567 A--------LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTK 618
+ ++ + E ++ + +LSV S + + A+ + S
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243
Query: 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 678
+ + L+ ++ + + ++V + + ++ +
Sbjct: 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYKNKM 302
Query: 679 RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 738
+ A E A A L + ++E+++ A+ LP
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDIT-EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361
Query: 739 VLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV----AT 794
L + A + G + LV L A +
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLR--EQGAIPRLVQLLVRAHQDTQRRTSM 419
Query: 795 SEALDALAILSRSGGASGHVKPAWQVLAEFPKS---------ITPIVSSIADATPLLQDK 845
R A +LA + I V + +Q
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479
Query: 846 AIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALL 895
A +L L +D+ E A G + + ++ N V AA+L
Sbjct: 480 AAGVLCELAQDKE---AAEAIEAEGATAPLT-ELLHSRNEGVATYAAAVL 525
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (148), Expect = 6e-10
Identities = 73/526 (13%), Positives = 154/526 (29%), Gaps = 14/526 (2%)
Query: 589 SVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI---FETRKDLRESSIA 645
+VV+ + + A A+ + K+L+ + K+A + + +R + S
Sbjct: 1 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 60
Query: 646 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE 705
V + V + + + L + RE A + LV + GSPV
Sbjct: 61 VSAI--VRTMQNTNDVETARCTAGTLHNLSHH-REGLL-AIFKSGGIPALVKMLGSPVDS 116
Query: 706 VAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKID 765
V A L NL+L E ++ A+ L L T ++L +
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 766 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFP 825
+ + L + + + T+ + + + S + Q L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236
Query: 826 KSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNP 885
+ + T A + ++ + ++ A + + T
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296
Query: 886 KVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEA 945
K + + + ++ + + P I +L + S + + +
Sbjct: 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356
Query: 946 ISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCK---IVIMEAGAMDVL 1002
+ + + + V NLA+ ++ + ++ D
Sbjct: 357 LPVVVKLLHPPSHWPLIK--ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414
Query: 1003 TDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEES 1062
Q + + + C L IL +D + IP+ LL S
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474
Query: 1063 ANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQ 1108
+ AA + L + + GA L LL + V
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAI--EAEGATAPLTELLHSRNEGVA 518
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (145), Expect = 1e-09
Identities = 69/503 (13%), Positives = 152/503 (30%), Gaps = 52/503 (10%)
Query: 974 LAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAI 1033
A ++ L+ + ++ + + + ++ T A L
Sbjct: 36 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC---------TAGTLHN 86
Query: 1034 LFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAA 1093
L R+ + A IP L +L S + ++A + + + G ++V +G
Sbjct: 87 LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN-LLLHQEGAKMAVRLAGGL 145
Query: 1094 GGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDL 1153
+++LL + + + + + + ALV++
Sbjct: 146 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL------------ASGGPQALVNI 193
Query: 1154 LKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDL 1213
++ ++++ C SNK +VEAG ++AL +L+ Q + L
Sbjct: 194 MRTYTYEKLL--WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 1214 LGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQA 1273
+ S A ++ + + + +A + +
Sbjct: 252 RNL--SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309
Query: 1274 VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV---ADVEMNAVDVLCRILSSNCS 1330
++ LV + +RE A + + + A + V+ ++L
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369
Query: 1331 MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQ--------------- 1375
L L L + + + LV LLV Q
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429
Query: 1376 -------HSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGK 1428
AL L D ++ + V LLY + + L +L +
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489
Query: 1429 DRPSCKLEMVKAGVIESVLDILH 1451
D+ + + + G + ++LH
Sbjct: 490 DKEAAEA-IEAEGATAPLTELLH 511
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (132), Expect = 5e-08
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ 112
+P+ V LL S ++ AA VL L ++ E + G PL LL S +
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518
Query: 113 IAAAKTIYAVS 123
AA ++ +S
Sbjct: 519 TYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (119), Expect = 1e-06
Identities = 75/586 (12%), Positives = 142/586 (24%), Gaps = 62/586 (10%)
Query: 714 LANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVN 773
L N D+E++ +AI E T++L + AA + +L + I +
Sbjct: 5 LINYQDDAELATRAIPE-----LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI---MR 56
Query: 774 RAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 833
V A+V +++ + L LS H + + I +V
Sbjct: 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH------HREGLLAIFKS--GGIPALVK 108
Query: 834 SIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAA 893
+ + AI L L Q A G +A +
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCL 167
Query: 894 LLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTS 953
++ + I+ + ++++ + S + +
Sbjct: 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS------------- 214
Query: 954 EEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQF 1013
+ + + L + + + + A
Sbjct: 215 -VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 273
Query: 1014 TQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVA 1073
+ +L + + + I L + A
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333
Query: 1074 SLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFR 1133
N+ + ++ A V +AL
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW---PLIKATVGLIRNLALCPANH 390
Query: 1134 VEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEA 1193
GA IP LV LL +++
Sbjct: 391 APLREQGA-----IPRLVQLLVR-----------------------AHQDTQRRTSMGGT 422
Query: 1194 LTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAK 1253
+++ + E T L IL R + V +L + AA
Sbjct: 423 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482
Query: 1254 ALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRL 1299
L L A A A PL E+L++ E A A L R+
Sbjct: 483 VLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (98), Expect = 5e-04
Identities = 71/534 (13%), Positives = 149/534 (27%), Gaps = 38/534 (7%)
Query: 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTK 618
T I +LT LL E +V V A + + + V +++ + +T
Sbjct: 16 TRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 619 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 678
+ A+ + ++ + + +++K+L + +L A L + L
Sbjct: 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132
Query: 679 RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 738
+ +A L +V L ++ T L L ++ S+ I A
Sbjct: 133 EGAKMAVRLAG-GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 739 VLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEAL 798
+ K L + + S L L S L
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 799 DALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 858
L+ + + L ++ + + +++
Sbjct: 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 859 AVL------------GDEVTGASGCISSIARRVISCTNPKVKIGG----AALLICAAKVN 902
A++ + A ++S + N G LL +
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 903 HQRIVEDLNHSNSCAPLIQSLVTMLSVVEA-SPLRNQGNDDKEAISIYRYTSEEARNGGE 961
+ L + + P + + + L + + D + + T ++ G
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Query: 962 SESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKED 1021
E L +LA +IVI + + + +
Sbjct: 432 MEEIVE------GCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSP----------IE 474
Query: 1022 SSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASL 1075
+ + A +L L QD++ A A L LL S +AA + +
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.9 bits (203), Expect = 9e-17
Identities = 63/429 (14%), Positives = 135/429 (31%), Gaps = 12/429 (2%)
Query: 135 IFSTEGVVPVLWEQLKNGLKSGNVVDNLL-TGALRN-LSTSTEGFWAATVQAGGIDILVK 192
I S +G V E + G+ S N+ L T A R LS + ++AG I V
Sbjct: 4 IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63
Query: 193 LLTLGQSST-QAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGA 251
L S Q + L + V+ A + LL S + + +A A
Sbjct: 64 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA-HISEQAVWA 122
Query: 252 LKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQ-ALQENAMCALANISGGL 310
L +++ R + I ++ P + Y + +
Sbjct: 123 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 182
Query: 311 SNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370
+ + + +L + + + D E + V LV
Sbjct: 183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 242
Query: 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN 430
+V + G + K+ ++ A + L+T +Q+E + +
Sbjct: 243 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302
Query: 431 EGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489
+ + + L+ + + Q+E + A+ S + + G I PL
Sbjct: 303 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 362
Query: 490 VQILESGSAKAKEDSASILRNLCN------HSEDIRACVESADAVPALLWLLKNGSANGK 543
+ +L + K + + N+ +E + +E + + L ++ + +
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVY 422
Query: 544 EIAAKTLNH 552
+ + +
Sbjct: 423 KASLNLIEK 431
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.5 bits (194), Expect = 1e-15
Identities = 67/438 (15%), Positives = 151/438 (34%), Gaps = 22/438 (5%)
Query: 427 LCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGG 485
+ +N+G++ ++ ++ + + E Q + + A LLS E I AG
Sbjct: 4 IGSNQGTV------NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 57
Query: 486 IPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKE 544
IP V L + + +SA L N+ + + + V A+PA + LL + A+ E
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117
Query: 545 IAAKTLNHLIHKSDT---------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 595
A L ++ A L L DL L L LS + +
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177
Query: 596 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKL 655
A + + + L + + + R + K + +
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237
Query: 656 LDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 715
L +E +V + ++ + + + AL+ L +P + ++AT ++
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297
Query: 716 NLILDSEVSEKAIAEEIILPATRVLCE-GTISGKTLAAAAIARLLHSRKIDYTITDCVNR 774
N+ + + + ++P + + AA AI ++ +
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV--H 355
Query: 775 AGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSS 834
G + L++ L + + LDA++ + ++ G + ++ E + I +
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQV-ILDAISNIFQAAEKLGETEKLSIMIEEC-GGLDKIEAL 413
Query: 835 IADATPLLQDKAIEILSR 852
+ ++ ++ +
Sbjct: 414 QRHENESVYKASLNLIEK 431
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.9 bits (164), Expect = 5e-12
Identities = 67/408 (16%), Positives = 141/408 (34%), Gaps = 19/408 (4%)
Query: 1261 ADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDV 1320
AD N + +V+ +V+ +N+ Q A A +LLS + + +
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI-IRAGLIPK 60
Query: 1321 LCRILSSNCSMELKGDAAE-LCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVV 1379
L ++ ++A L + G + V + +SLL + + V
Sbjct: 61 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 120
Query: 1380 RALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHE-----AISRALVKLGKDRPSC 1433
AL + D +LV HGA+ PL+ LL + ++ L L +++
Sbjct: 121 WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 180
Query: 1434 KLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTR 1493
++ +++ +LH + + + LT+ K V P + L
Sbjct: 181 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 240
Query: 1494 SEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1553
+ P + + + + A+ LL +P +Q+ A +S+
Sbjct: 241 ATELP--IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298
Query: 1554 LLLEEQLQK-DPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE----IAKEGG 1608
+ Q Q V ++ L+ VL Q+ A A+ + E + G
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 358
Query: 1609 VTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVR 1656
+ L ++ D + +S+I Q + + +++++
Sbjct: 359 IEPLMNLLSAKDTKIIQV----ILDAISNIFQAAEKLGETEKLSIMIE 402
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.4 bits (160), Expect = 2e-11
Identities = 56/390 (14%), Positives = 118/390 (30%), Gaps = 9/390 (2%)
Query: 1189 GALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFA-AVSQLVAVLRLGG-RG 1246
++E + K ++ ++ +A +L + A + + V+ L
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72
Query: 1247 ARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLS--EN 1303
++ +A AL ++ S A A+ + +L + A+ AL +
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 132
Query: 1304 PSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPL 1363
+ + +L S + + L N + A + P
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 1364 VSLLVTEFSPAQHSVVRALDKLVDDEQ--LAELVAAHGAVIPLVGLLYGRNYMLHEAISR 1421
+ L+ P + + D E+V G V LV LL + R
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252
Query: 1422 ALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAA 1481
A+ + +++ AG + +L + + +T
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 1482 KVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAP 1541
+ P + + Q A + N L IEPL+ LL +
Sbjct: 313 HGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 371
Query: 1542 AVQQLAAELLSHLL-LEEQLQKDPVTQQVI 1570
+ Q+ + +S++ E+L + +I
Sbjct: 372 KIIQVILDAISNIFQAAEKLGETEKLSIMI 401
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.7 bits (140), Expect = 4e-09
Identities = 51/377 (13%), Positives = 114/377 (30%), Gaps = 15/377 (3%)
Query: 1359 CVEPLVSLLVTEFSPAQHSVVRALDKL--VDDEQLAELVAAHGAVIPLVGLL-YGRNYML 1415
VE +V + + +Q +A KL + + + + G + V L +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 1416 HEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAGI 1474
+ AL + +V G I + + +L A L I + +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 1475 AKGPSAAKVVEPLFLLLTR---SEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEP 1531
++PL LL S + L N+ + Q +
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPT 192
Query: 1532 LIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKA 1591
L+ LL P V + +S+L + + V ++ + P + L +
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252
Query: 1592 LVSIALTWPN----EIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYL 1647
+ +T + ++ G + ++ ++ + +++ + +
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 1648 EVPVAVLVRLLRSGSEGTVIGSLNALLVL-ESDDGTSAEAMAESGAIEALLELLRSHQCE 1706
V LV +L T + A+ + G IE L+ LL + +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 1707 --ETAARLLEVLLNNGK 1721
+ + + +
Sbjct: 373 IIQVILDAISNIFQAAE 389
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.3 bits (113), Expect = 7e-06
Identities = 61/409 (14%), Positives = 130/409 (31%), Gaps = 28/409 (6%)
Query: 1458 CSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQC 1517
A +LL A ++ L +++ Q + L NI
Sbjct: 34 TQAARKLLSREKQPPIDNI--IRAGLIPKFVSFLGKTDC-SPIQFESAWALTNIASG-TS 89
Query: 1518 RADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIRV 1576
++ AI I LL SP + + A L ++ + + + I PL+ +
Sbjct: 90 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149
Query: 1577 LGSGIHILQQRAVKALVSIA--------LTWPNEIAKEGGVTELSKIILQADPSLPHALW 1628
L ++ P A E + L +++ DP +
Sbjct: 150 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 209
Query: 1629 ESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMA 1688
+ + + + + V LV+LL + V +L A+ + + + +
Sbjct: 210 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 269
Query: 1689 ESGAIEALLELLRSHQC---EETAARLLEVLLNNGKIRESKATKSAILPLSQYLL--DPQ 1743
++GA+ LL + + +E + + + + L L D +
Sbjct: 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 329
Query: 1744 TQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLV 1803
TQ + A + G + + L+N+L + T+ + V + A+ N+
Sbjct: 330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP---LMNLLSAKDTK-IIQVILDAISNIF 385
Query: 1804 MYSRSN------KRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFS 1846
+ + E GG+ + L + + ++ FS
Sbjct: 386 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 2e-04
Identities = 59/419 (14%), Positives = 126/419 (30%), Gaps = 27/419 (6%)
Query: 1046 TMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADA 1105
++ + + S ++ A QA L+ + + ++ +G +S LG
Sbjct: 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---- 66
Query: 1106 DVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGA-TSRKAIPALVDLLKPIPDRPGAP 1164
+ + +++ AL + + A AIPA + LL
Sbjct: 67 --------KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH--IS 116
Query: 1165 FLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFS-SAEI 1223
A+ L +A D + + ++++ GA++ L L++ L S
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176
Query: 1224 RRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1283
+ AV Q++ L S E V+ V
Sbjct: 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236
Query: 1284 GLEREQHAAIAALVRLLSENPS---RALAVADVEMNAVDVLCRILSSNCSMELKGDAAEL 1340
L I N ++ A+ V +L++ + K +
Sbjct: 237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 296
Query: 1341 CGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQLAELVAAH 1398
+ G V V LV +L Q A+ + +
Sbjct: 297 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 356
Query: 1399 GAVIPLVGLLYGRNYMLHEAISRALVKLGK------DRPSCKLEMVKAGVIESVLDILH 1451
G + PL+ LL ++ + + I A+ + + + + + + G ++ + +
Sbjct: 357 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.1 bits (97), Expect = 6e-04
Identities = 44/387 (11%), Positives = 90/387 (23%), Gaps = 56/387 (14%)
Query: 1654 LVRLLRSGSEGTVIGSLNALLVLES-DDGTSAEAMAESGAIEALLELLRSHQCEET---A 1709
+V+ + S + + + + A L S + + + +G I + L C +
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 1710 ARLLEVLLNNGKIRESKATKSAILPLSQYL---LDPQTQAQQARLLATLALGDLFQNEGL 1766
A L + + + +P L Q L +A + +
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 1767 ARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLI 1826
+ L L NL A + ++ L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 1827 GSSDPETSVQAAMFVKLLFSNHTIQEYASSET---------------------------- 1858
+DPE + + L + +
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 1859 -------------VRAITAAIEKELWATGTVNEEYLKALNALFNNFPRLRATEPATLSIP 1905
A+ + +E ++ + +P
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 317
Query: 1906 HLVTALKTGSEATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQYLIQSGPPR 1965
LV L TQ+ A A+ V + + I L L+ + +
Sbjct: 318 FLVGVLSKADFKTQKEAAWAITNY-----TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 1966 FQEKAEFLLQCLPGTLVVIIKRGNNMK 1992
+ L + K G K
Sbjct: 373 IIQVI---LDAISNIFQAAEKLGETEK 396
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.1 bits (97), Expect = 6e-04
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 12/202 (5%)
Query: 593 FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF-----ETRKDLRESSIAVK 647
+DI N +VE ++K ++S E+Q ++ A + ++ + + +
Sbjct: 1 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL-IP 59
Query: 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVA 707
V L I E++ L I E + A V A+ + L SP ++
Sbjct: 60 KF--VSFLGKTDCSPIQFESAWALTNIASGTSEQTK-AVVDGGAIPAFISLLASPHAHIS 116
Query: 708 EQATCALANLILDSEVSEKAIAEEIILPAT-RVLCEGTISGKTLAAAAIARLLHSR--KI 764
EQA AL N+ D + + + +L +S S +
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176
Query: 765 DYTITDCVNRAGTVLALVSFLE 786
+ LV L
Sbjct: 177 KNPAPPLDAVEQILPTLVRLLH 198
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.2 bits (178), Expect = 2e-13
Identities = 90/470 (19%), Positives = 171/470 (36%), Gaps = 21/470 (4%)
Query: 395 KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS 454
K + + AKR T + +E+ Q ++ + + L
Sbjct: 36 KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYS-------QLQQELPQMTQQLNSD 88
Query: 455 SEQQQECSVALLC-LLSNENDDSKWAITAAGGIPPLVQI-LESGSAKAKEDSASILRNLC 512
Q+Q + +LS E+ + AG +P LV+ E+ + ++A L N+
Sbjct: 89 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIA 148
Query: 513 NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQL-----TA 567
+ + V ADAVP + LL GS KE A L ++ S L
Sbjct: 149 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 208
Query: 568 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSAS 627
+L + A ++ ++ + S + A+ T+ K++ S ET +
Sbjct: 209 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 268
Query: 628 ALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAV 687
A++ + + ++ ++ I V+ +++LL S + A R + I +V
Sbjct: 269 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 328
Query: 688 ARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE-GTIS 746
A L L +L SP + ++A ++N+ + +A+ + ++P L E
Sbjct: 329 A-GVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 387
Query: 747 GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSR 806
K A AI+ I + G + L LE A + LDAL + +
Sbjct: 388 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV-TLDALENILK 446
Query: 807 SGGASGHVKPAWQ----VLAEFPKSITPIVSSIADATPLLQDKAIEILSR 852
G A + E + I + + + +KA +I+
Sbjct: 447 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.6 bits (122), Expect = 8e-07
Identities = 62/404 (15%), Positives = 120/404 (29%), Gaps = 54/404 (13%)
Query: 1233 VSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQA--VQPLVEILNTGLERE-Q 1289
+ Q+ L + SA + S +H + QA V LVE + Q
Sbjct: 78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137
Query: 1290 HAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1349
A AL + S ++ V V+ +AV + ++L + + L V +T
Sbjct: 138 LEAAWALTNIASGTSAQTKVV--VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 195
Query: 1350 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLL 1408
R V +EP++ L + + L L + + A+ L L+
Sbjct: 196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 255
Query: 1409 YGR------------------------------------------NYMLHEAISRALVKL 1426
Y + ++ RA+ +
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 315
Query: 1427 GKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEP 1486
++ AGV+ ++ +L + + + +T + P
Sbjct: 316 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 375
Query: 1487 LFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADY--SLTSHQAIEPLIPLLDSPAPAVQ 1544
+ L + A + N R D L S I+PL LL+ +
Sbjct: 376 PLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434
Query: 1545 QLAAELLSHLL--LEEQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1586
++ + L ++L E + + I G G+ +
Sbjct: 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAG-GMEKIFN 477
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.6 bits (122), Expect = 8e-07
Identities = 58/433 (13%), Positives = 117/433 (27%), Gaps = 50/433 (11%)
Query: 1444 ESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVE----PLFLLLTRSEFGPD 1499
+ + + SA + +IL+ P V++ P + R
Sbjct: 80 QMTQQLNSDDMQEQLSATVKFRQILSRE----HRPPIDVVIQAGVVPRLVEFMRENQPEM 135
Query: 1500 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1559
Q A L NI + + A+ I LL + + V++ A L ++ +
Sbjct: 136 LQLEAAWALTNIASGTSAQ-TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1619
+D V Q I L + R +S V++ + +
Sbjct: 195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 254
Query: 1620 DPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESD 1679
S+ A +S + E V + + L
Sbjct: 255 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-------------HES 301
Query: 1680 DGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYL 1739
A+ G I +L L +LL++
Sbjct: 302 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP------------------- 342
Query: 1740 LDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICAL 1799
+ + ++ + G+ Q + + + + L E + K A A+
Sbjct: 343 -KENIKKEACWTISNITAGNTEQIQAVIDAN-----LIPPLVKLLEVAEYKTKKEACWAI 396
Query: 1800 QNLVMYSRSNK---RAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASS 1856
N R + G ++ + DL+ +D ++ + + A
Sbjct: 397 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG 456
Query: 1857 ETVRAITAAIEKE 1869
+ IEK
Sbjct: 457 LNINENADFIEKA 469
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (152), Expect = 6e-12
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWS 2032
L+V+++ N+ G Y KL L P ++TK + NPEW E+F +
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 2033 FEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESK 2084
+ K ++L + + ++ F G ++ I + V G + LL + +
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEE 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 61.3 bits (148), Expect = 2e-11
Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 1979 GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIP 2036
GTL V++ ++ + N Y +LT + G PEW E+F F +
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF--IFTVS 67
Query: 2037 PKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGE-YTLLPESKSGPSRNLEIE 2094
+L +K + G+ TI ++ V + G++ Y ++ + + + +
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127
Query: 2095 FL 2096
F
Sbjct: 128 FK 129
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 3e-09
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 18/133 (13%)
Query: 1971 EFLLQCLPGTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPP-------------RQTK 2015
+ + G L++ I + N+ + + G + K+ L R+TK
Sbjct: 10 QLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTK 69
Query: 2016 IVSTGPNPEWEESFAWS--FEIPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGA 2072
V NPEW ++ + + L ++ + + + F G+V I + L
Sbjct: 70 YVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN 129
Query: 2073 VAGEYTLLPESKS 2085
Y L +++S
Sbjct: 130 TPRWYPLKEQTES 142
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.7 bits (131), Expect = 4e-09
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 1971 EFLLQCLP--GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPP----RQTKIVSTGPN 2022
L TL V++ + ++ G Y K+ L + ++T + PN
Sbjct: 5 LVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPN 64
Query: 2023 PEWEESFAWSFEIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRV 2067
+ E F F+IP + + + + ++ G++ +
Sbjct: 65 AVFNELF--VFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 3e-08
Identities = 138/1089 (12%), Positives = 315/1089 (28%), Gaps = 80/1089 (7%)
Query: 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470
MATN++ EL + +KL ++ R+ +++++ LL + + Q +V L L
Sbjct: 22 MATNDLMTELQKDSIKLDDD--------SERKVVKMILKLLEDKNGEVQNLAVKCLGPLV 73
Query: 471 NENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVP 529
++ + + + L + S + ++ S+ L+ + +A+
Sbjct: 74 SKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 129
Query: 530 ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLS 589
+ L + A ++++ + I ++ + + L +L L L+
Sbjct: 130 KITGRLTSAIAKQEDVSVQLEALDI-------MADMLSRQGGLLVNFHPSILTCLLPQLT 182
Query: 590 VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTL 649
S +R+ + + ++ S L + + ++ +
Sbjct: 183 --SPRLAVRKR-----TIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI 235
Query: 650 WSVMKLLDVG-SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP----VL 704
++ + E + + + E RE A ++ P ++
Sbjct: 236 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII 295
Query: 705 EVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 764
+ + N D E ++ + + S + + R
Sbjct: 296 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 355
Query: 765 DYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEF 824
T + L S + D + V+
Sbjct: 356 AVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM 415
Query: 825 PKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTN 884
+ TP+ + +++ ++ + + + + ++ + +
Sbjct: 416 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 475
Query: 885 PKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKE 944
+ K++ + + ++S + ++ V A E
Sbjct: 476 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 535
Query: 945 AISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCK--------IVIMEA 996
A+ + + + R + S A + ++L + L D + + +
Sbjct: 536 ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 595
Query: 997 GAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANL 1056
D L + ++L F + E + + L I I + +PILA+
Sbjct: 596 NLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 655
Query: 1057 LKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEE 1116
L+ + A + A+ L+ N ++ + +SE
Sbjct: 656 LRKNQRALKLGTLSALDILIKN--------------YSDSLTAAMIDAVLDELPPLISES 701
Query: 1117 FALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAK 1176
V L L +V + S + L+ L++ + GA L F L
Sbjct: 702 DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 761
Query: 1177 DCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQL 1236
+N M L LT + T + + + ++ + A V Q
Sbjct: 762 TGTNNLGYMDL---LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF 818
Query: 1237 VAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAAL 1296
+ + R AL SL H + + ++E ++ E + AA AL
Sbjct: 819 IQDV-KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1297 VRLLSENPSRALAV--------ADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLF--- 1345
+ N L + + L I+SS + LK + +L
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1346 GNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLV 1405
+ A C+ L + P L + + AV +
Sbjct: 938 ECAEEGTRNVVAECLGKLTLIDPETLLPR-------LKGYLISGSSYARSSVVTAVKFTI 990
Query: 1406 GLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1465
L + +K +D V+ + + H P + +L
Sbjct: 991 SDHPQPIDPLLKNCIGDFLKTLEDPDL----NVRRVALVTFNSAAHNKPSLIRDLLDTVL 1046
Query: 1466 RILTNNAGI 1474
L N +
Sbjct: 1047 PHLYNETKV 1055
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 4e-06
Identities = 48/374 (12%), Positives = 110/374 (29%), Gaps = 21/374 (5%)
Query: 1443 IESVLD-ILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQ 1501
I ++L+ + DF A +L+ L ++ S KVV+ + LL + Q
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN--GEVQ 62
Query: 1502 HSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL--LEEQ 1559
+ A++ L ++ + ++ L + S ++ +++ L ++ L
Sbjct: 63 NLAVKCLGPLVSKVK-----EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA 117
Query: 1560 LQKDPVTQQVIGPLIRVLGSGIH-----ILQQRAVKALVSIALTWPNEIAKEGGVTELSK 1614
+ V + L S I +Q A+ + + + +
Sbjct: 118 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILT 175
Query: 1615 IILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSG-SEGTVIGSLNAL 1673
+L S A+ + L ++ + L+ L S T + +
Sbjct: 176 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI 235
Query: 1674 LVLESDDGTSAEAMAESGAIEALLELLRS--HQCEETAARLLEVLLNNGKIRESKATKSA 1731
+ G E I +++ + E + E + +
Sbjct: 236 AAISRQAGHRIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTI 294
Query: 1732 ILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEM 1791
I +YL A+ ++ S D S + + + +
Sbjct: 295 INICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 354
Query: 1792 KVVAICALQNLVMY 1805
V + L +
Sbjct: 355 DAVVSTRHEMLPEF 368
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-05
Identities = 110/1049 (10%), Positives = 272/1049 (25%), Gaps = 77/1049 (7%)
Query: 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD- 582
V +L LL++ + + +A K L L+ K + + L +++ K + D
Sbjct: 43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDI 102
Query: 583 ---ALKSMLSVVSFSDILREGSA--ANDAVETMIKILSSTKEETQAKSASALAGIFETRK 637
LK+++ + + +A + ++ ++ + A + +R+
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162
Query: 638 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV- 696
+ L ++ L + L + +S V D + L+
Sbjct: 163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI-----VFVDLIEHLLS 217
Query: 697 VLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIA 756
L+ + + +A + + E+II + + A
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 757 RLL-----HSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGAS 811
+ TI + + T ++ + A S
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 812 GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGC 871
+W+V K + +VS+ + P L +++ + +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADV------ 391
Query: 872 ISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE 931
+ + + + + + N + ++
Sbjct: 392 FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 451
Query: 932 ASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKI 991
+ L N A++ + ++ S++ + L +L H ++
Sbjct: 452 FNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS--PQV 509
Query: 992 VIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIP 1051
A+ + + + + D +
Sbjct: 510 FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT-C 568
Query: 1052 ILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLG--CADADVQD 1109
+ L ++ A + + L S + L L V+
Sbjct: 569 TIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKA 628
Query: 1110 LLDLSEEFALVRYPDQVA--LERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLA 1167
L ++ + + + L A + AL L+K D A +
Sbjct: 629 LTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMID 688
Query: 1168 LGFLIQL-AKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRH 1226
+ + L L K + +L+G++ S
Sbjct: 689 AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGA 748
Query: 1227 ESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLE 1286
SA Q + V G ++S + + ++ V L
Sbjct: 749 LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACP 808
Query: 1287 REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG 1346
+E A + ++ + +N ++ + + ++ + + + +EL
Sbjct: 809 KEGPAVVGQFIQDV-KNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL------------- 854
Query: 1347 NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVG 1406
++ + + + AL + V +P V
Sbjct: 855 -------------KSVILEAFSSPSEEVKSAASYALGSIS--------VGNLPEYLPFVL 893
Query: 1407 LLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLR 1466
+ +L ++ L+ + +L A + + AE L
Sbjct: 894 QEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG 953
Query: 1467 ILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSH 1526
LT ++ L L + S + + +
Sbjct: 954 KLTL-------IDPETLLPRLKGYLISGS--SYARSSVVTAVKFTISDHP--QPIDPLLK 1002
Query: 1527 QAIEPLIPLLDSPAPAVQQLAAELLSHLL 1555
I + L+ P V+++A +
Sbjct: 1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 2e-04
Identities = 47/329 (14%), Positives = 107/329 (32%), Gaps = 22/329 (6%)
Query: 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL 310
AL ++ D + + G ++ P + + +A ++
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 311 SNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370
++ ++ D+ AL+ S L ++ ++ F
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDS--IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSP 865
Query: 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN 430
V+ AL S+ E ++ IT + + Q L+ +L ++ ++
Sbjct: 866 SE-EVKSAASYALGSI-------SVGNLPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISS 916
Query: 431 EGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490
+ LL+ + E + L L+ + ++ +P L
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLK 968
Query: 491 QILESGSAKAKEDSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKT 549
L SGS+ A+ + ++ + + I ++ + + L L++ N + +A T
Sbjct: 969 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK--NCIGDFLKTLEDPDLNVRRVALVT 1026
Query: 550 LNHLIHKSDTATISQLTALLTSDLPESKV 578
N H + L +L E+KV
Sbjct: 1027 FNSAAHNKPSLIRDLLDTVLPHLYNETKV 1055
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 8e-08
Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWS 2032
L+V I ++ ++ + Y K+ + R+TK V P+W ++F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF--I 71
Query: 2033 FEIPP----KGQKLHISCKNKSKMGKSS---FGKVTIQIDRVVMLGAVAGEYTL 2079
+ + + L I+ +++++ + G++ I+++ +L Y L
Sbjct: 72 YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET-ALLDDEPHWYKL 124
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 1e-07
Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 7/216 (3%)
Query: 52 HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG-LLKSSSAE 110
P ++ + A +L LC+ + + L+G L++ +A
Sbjct: 15 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 74
Query: 111 GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170
+ AA+ I SQ + G + L L + + V A+ L
Sbjct: 75 LRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCL 129
Query: 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATK 230
E ++ G +L++ + + FLL ++ + + +
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189
Query: 231 QLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREI 266
QL+ L+ + + GAL SL RE
Sbjct: 190 QLVALVRTEHS-PFHEHVLGALCSLVTDFPQGVREC 224
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 6e-07
Identities = 35/246 (14%), Positives = 85/246 (34%), Gaps = 13/246 (5%)
Query: 436 RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV-QILE 494
R L + ++++ L L EN D+ G+ LV + LE
Sbjct: 12 RVLSQPMPPTAGEAEQAADQQEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLE 69
Query: 495 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANG-KEIAAKTLNHL 553
+G+A + +A ++ + I+ V A+ LL LL + + + A ++ L
Sbjct: 70 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 129
Query: 554 I-----HKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 608
+ + + L+ + + + + + + +++ + + V+
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189
Query: 609 TMIKILSSTKEETQAKSASALAGIF----ETRKDLRESSIAVKTLWSVMKLLDVGSECIL 664
++ ++ + AL + + ++ RE + ++ L L E
Sbjct: 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQ 249
Query: 665 VEASRC 670
E C
Sbjct: 250 EELEFC 255
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 1979 GTLVVIIKRGNN---MKQSVGNPSVYCKLTLGN--TPPRQTKIVSTGPNPEWEESFAWSF 2033
VV IK M + Y K+T+ +T+++ +P ++E+F + +
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF-Y 80
Query: 2034 EIPP---KGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKSGPS 2088
IP + LH + + + + G+V I + + + G+ + E SGPS
Sbjct: 81 GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE---GKMLMNREIISGPS 136
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 3e-07
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 6/112 (5%)
Query: 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGN---TPPRQTKIVSTGPNPEWEESFAWSFEI 2035
L V G Y + ++ N + QT + + WEE
Sbjct: 26 AELFVTRLEAVTSNHD-GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 2036 P-PKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLLPESKS 2085
L ++ + + + S G++ + +D + A L S
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.4 bits (117), Expect = 3e-07
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPP----RQTKIVSTGPNPEWEESFAWS 2032
G L+V I R ++ + G + KL L +T+I NPE+ E F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEF--F 72
Query: 2033 FEIPP---KGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLP 2081
++I + L IS + + + Q+ + Y L
Sbjct: 73 YDIKHSDLAKKSLDISVWDYDIGKSNDYI-GGCQLGISAKGERLKHWYECLK 123
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 1979 GTLVVIIKRGNNMKQSV-----GNPSVYCKLTLGNTPP--RQTKIVSTGPNPEWEESFAW 2031
V++ R + + P Y +L + TP ++T+ + NP W E+F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF-E 61
Query: 2032 SFEIPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNL 2091
P + L I+ + + + + G T + + + + ++ +
Sbjct: 62 FILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE--MVLEM 119
Query: 2092 EIEFLWS 2098
+E S
Sbjct: 120 SLEVASS 126
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 3e-06
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 1981 LVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ 2040
L V +K+ + + Y L + N + T I G P WE+ + FEI
Sbjct: 4 LCVGVKKAKFDG-AQEKFNTYVTLKVQNV--KSTTIAVRGSQPSWEQD--FMFEINRLDL 58
Query: 2041 KLHISCKNKSKMGKSSFGKVTIQIDRV 2067
L + NK + + G V I + +
Sbjct: 59 GLTVEVWNKGLIWDTMVGTVWIPLRTI 85
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 9e-06
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 1979 GTLVVIIKRGNNM--KQSVGNPSVYCKLTLGNTPP--RQTKIVSTGPNPEWEESFAWSFE 2034
L+V I + + G Y K+ L +TK+ NP + E ++F+
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ--FTFK 91
Query: 2035 IP---PKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVVMLGAVAGEYTLL 2080
+P G+ L ++ + + K G+ + ++ V L
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 43.0 bits (100), Expect = 6e-05
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 23/139 (16%)
Query: 1977 LPGTLVVIIKRGNN-------------MKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNP 2023
G L + I + + Y L + ++ QT +P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 2024 EWEESFAWSFEIPPKGQKLHISCKNKSKMGKS-SFGKVTIQIDRVVMLGAVAGE--YTLL 2080
W + + ++ G+K+ ++ + + +G TIQ + ++ G+ E L
Sbjct: 64 AWHDE--FVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 2081 PESKSGPSRNLEIEFLWSN 2099
PE K + I+ S+
Sbjct: 121 PEGKV----YVIIDLSGSS 135
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 4e-04
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 1978 PGTLVVIIKRGNNM----KQSVGNPSVYCKLTLGNTPPRQTK-----IVSTGPNPEWEES 2028
P L V I G + K + + I + G NP W+
Sbjct: 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62
Query: 2029 FAWSFEIP-PKGQKLHISCKNKSKMGKSSF-GKVTIQI 2064
F FE+ P + ++ K+ F G+ TI
Sbjct: 63 F--EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW 98
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 6e-04
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 1977 LPGTLVVIIKRGNN--MKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFE 2034
+ L + + K++ PS Y ++T+ ++T+ + +P+W++
Sbjct: 4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVT 62
Query: 2035 IPPKGQKLHISCKNKSKMGKSSF-GKVTIQIDRVV 2068
KLH + + G + I +
Sbjct: 63 PV---SKLHFRVWSHQTLKSDVLLGTAALDIYETL 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2100 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.96 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.84 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.79 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.78 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.78 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.6 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.58 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.41 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.41 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.33 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.32 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.3 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.12 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.03 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.0 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.97 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.96 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 98.91 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 98.9 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 98.87 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 98.69 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.65 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 98.65 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 98.63 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 98.6 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.52 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.5 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.42 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 98.4 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 98.4 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.36 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 98.25 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 98.24 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.21 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.05 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.86 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 97.81 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.8 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.66 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.63 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.1 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.43 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 96.05 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 93.57 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.86 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.46 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 91.21 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 87.1 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 86.0 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-35 Score=383.46 Aligned_cols=505 Identities=20% Similarity=0.185 Sum_probs=419.2
Q ss_pred CCchHHHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhc-CChHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCc
Q 000133 53 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 53 ~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
.+++|.|+.+|++++..++.+|+.+++.+++++..+..++.. |.+|.|+.+|++ ++++.+..|+.+|.+++. +.
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~----~~ 91 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----SH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC----Cc
Confidence 368999999999999999999999999999888888777665 789999999975 678899999999999987 55
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 210 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~ 210 (2100)
.++..+++.|++|.|+.+|.+ .++.++..+.++|+|++.+.+..+..+.+.|+++.|+.+|++++++++..++.+|.
T Consensus 92 ~~~~~i~~~g~i~~Li~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 168 (529)
T d1jdha_ 92 EGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCHHHHHHHhCC---CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHH
Confidence 567789999999999999976 45668999999999999988888888999999999999999999999999999999
Q ss_pred HHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhh
Q 000133 211 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 290 (2100)
Q Consensus 211 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~ 290 (2100)
+++..+...+..+.+.|+++.|+.++..+++..++..+++++.+++. +++++..+++.|+++.|+.++.+++
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~------- 240 (529)
T d1jdha_ 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 240 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSC-------
T ss_pred HHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccc-------
Confidence 99988887888889999999999999887777899999999999997 7789999999999999999997764
Q ss_pred hhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCC
Q 000133 291 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 370 (2100)
Q Consensus 291 ~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~ 370 (2100)
..++.+++++|.|++....
T Consensus 241 --~~~~~~a~~~l~~ls~~~~----------------------------------------------------------- 259 (529)
T d1jdha_ 241 --QRLVQNCLWTLRNLSDAAT----------------------------------------------------------- 259 (529)
T ss_dssp --HHHHHHHHHHHHHHHTTCT-----------------------------------------------------------
T ss_pred --hhhhhhhhhHHHhcccccc-----------------------------------------------------------
Confidence 5678888888888764211
Q ss_pred CChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHh
Q 000133 371 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 450 (2100)
Q Consensus 371 ~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 450 (2100)
......|+++.|+.++.++++.++..++++|.+++.+++.++..+.+.++++.|+.+
T Consensus 260 -----------------------~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~ 316 (529)
T d1jdha_ 260 -----------------------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp -----------------------TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -----------------------chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHH
Confidence 011123567888999999999999999999999999888888899999999999998
Q ss_pred hC--CCCHHHHHHHHHHHHHhccCCcc---cHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 451 LG--LSSEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVES 524 (2100)
Q Consensus 451 L~--s~~~~v~~~A~~aL~nLs~~~~~---~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~~~~~i~~ 524 (2100)
+. ++++++++.++++|++++..... .+..+...++++.|+.++..+ +..++..++++|++++.+ ++.+..+.+
T Consensus 317 l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~ 395 (529)
T d1jdha_ 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 395 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhh
Confidence 84 56788999999999999864433 356678899999999999876 467788899999999985 788999999
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhcc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 604 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 604 (2100)
.|+++.|++++.+++...+..++.+.......... . ..+....+..++..++. .++ .+..+...
T Consensus 396 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~al~~la~---~~~-~r~~~~~~ 459 (529)
T d1jdha_ 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV-R-----------MEEIVEGCTGALHILAR---DVH-NRIVIRGL 459 (529)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----------CBTTB-C-----------HHHHHHHHHHHHHHHTT---SHH-HHHHHHHT
T ss_pred cccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhccc-c-----------hHHHHHHHHHHHHHHcc---CHH-HHHHHHHC
Confidence 99999999999988777777666655444332211 1 12233444455554432 222 34456678
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 605 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 605 ~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
++++.|+.+|.++++.+++.|+++|++++.+ ++.++.+...|++++|++++.++++.++..|+.+|.+|
T Consensus 460 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999976 78889999999999999999999999999999999987
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-33 Score=367.95 Aligned_cols=509 Identities=19% Similarity=0.180 Sum_probs=410.5
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchh-ccCChHHHHHHhhccCCCcchHHHHHHHHHHHh
Q 000133 92 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 170 (2100)
Q Consensus 92 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~-~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL 170 (2100)
+..+.+|.|+++|++++.+++..|+.+|.+++. +...+..++ ..|++|.|+.+|+... +..++..++.+|+++
T Consensus 14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~----~~~~~~~~~~~~~~v~~l~~~L~~~~--~~~~~~~a~~~L~~l 87 (529)
T d1jdha_ 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNL 87 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh----ccHHHHHHHHhhhHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999997 333344444 4578999999997743 345888899999999
Q ss_pred ccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHH
Q 000133 171 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 250 (2100)
Q Consensus 171 ~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~ 250 (2100)
+. ++..+..+++.|++|.|+++|++++++++.+|+++|.+++.+++..+..+.+.|+++.|+++|++++ .+++..+++
T Consensus 88 ~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~ 165 (529)
T d1jdha_ 88 SH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTD 165 (529)
T ss_dssp TT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHH
T ss_pred hC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-hHHHHHHHH
Confidence 85 4566677999999999999999999999999999999999988878888899999999999998865 689999999
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
+|.+++..+++.+..+.+.|++++|+.++..++ ...+++.+.
T Consensus 166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--------~~~~~~~~~------------------------------ 207 (529)
T d1jdha_ 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTS------------------------------ 207 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--------CHHHHHHHH------------------------------
T ss_pred HHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh--------hHHHHHHHH------------------------------
Confidence 999999888889999999999999999885432 123344444
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 410 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 410 (2100)
.++.+++.+++++..+.+.|+++.|+.++.
T Consensus 208 --------------------------------------------------~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T d1jdha_ 208 --------------------------------------------------RVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp --------------------------------------------------HHHHHHTTSTTHHHHHHHTTHHHHHHTTTT
T ss_pred --------------------------------------------------HHHhhhhccccccchhhhhhhhhhHHHHhc
Confidence 444444445556667778899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
+++.+++..+++++.+++...... ....|+++.|++++++++..++..++++|++++.++++++..+.+.++++.|+
T Consensus 238 ~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li 314 (529)
T d1jdha_ 238 DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred ccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHH
Confidence 999999999999999998654331 22347899999999999999999999999999988888899999999999999
Q ss_pred Hhcc--CCCHHHHHHHHHHHHHHhcCCh---hhHHHHHhCCcHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHHH
Q 000133 491 QILE--SGSAKAKEDSASILRNLCNHSE---DIRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQ 564 (2100)
Q Consensus 491 ~lL~--~~~~~vre~A~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~~ 564 (2100)
.++. +..+++++.++++|++++...+ ..+..+...|+++.|+.++++++ +..+..++++|++++.+.+.
T Consensus 315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~----- 389 (529)
T d1jdha_ 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN----- 389 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----
T ss_pred HHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhh-----
Confidence 9884 4578999999999999996433 35667788999999999998754 45777888899999763221
Q ss_pred HHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 565 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 565 L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
+..+.+.|+++.|+++|.+.+.++++.++.+.........
T Consensus 390 ---------------------------------~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~------- 429 (529)
T d1jdha_ 390 ---------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------- 429 (529)
T ss_dssp ---------------------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT-------
T ss_pred ---------------------------------hhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcc-------
Confidence 2234457889999999998888888877766544443211
Q ss_pred hcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHH
Q 000133 645 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 724 (2100)
Q Consensus 645 ~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~ 724 (2100)
....++...++.++..++... .++..+.+.|+++.|++++++++++++..++++|++|..+++.+
T Consensus 430 -------------~~~~~~~~~~~~al~~la~~~--~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 494 (529)
T d1jdha_ 430 -------------VRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494 (529)
T ss_dssp -------------BCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHccCH--HHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhH
Confidence 112355667788888886532 55666788999999999999999999999999999999998888
Q ss_pred HHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHH
Q 000133 725 EKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 759 (2100)
Q Consensus 725 ~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~ 759 (2100)
..+...++++.|++++.++++.++..|+.+|.+++
T Consensus 495 ~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 88889999999999999999999999999998873
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.8e-27 Score=307.55 Aligned_cols=422 Identities=18% Similarity=0.203 Sum_probs=360.3
Q ss_pred cccHHHHHHhhcCCCHHHHHHHHHHHHHhhc-cCccchHHHHhCCcHHHHHHhhCC-CCHHHHHHHHHHHHHhccCCccc
Q 000133 399 SEAKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDS 476 (2100)
Q Consensus 399 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~-~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~v~~~A~~aL~nLs~~~~~~ 476 (2100)
.+.++.++..+.+.+...+..++..++++.. .+......+++.|++|.|+.++++ .++.++..|+++|+|++.+.+..
T Consensus 75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~ 154 (503)
T d1wa5b_ 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 154 (503)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3457888889999999999999999998664 334456788899999999999985 57789999999999999877888
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 556 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~ 556 (2100)
...+...|+++.|+.+|.+++.++++.|+|+|+||+..+++.|..+.+.|++++|+.++.+.++.++..++++|++++.+
T Consensus 155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred CCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 000133 557 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 636 (2100)
Q Consensus 557 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~ 636 (2100)
.++. +. .....+++|.|+.++.+.+++++..++++|.+++..+
T Consensus 235 ~~~~-------------~~------------------------~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~ 277 (503)
T d1wa5b_ 235 KKPQ-------------PD------------------------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 277 (503)
T ss_dssp SSSC-------------CC------------------------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred Cccc-------------hH------------------------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence 4331 00 0112456999999999999999999999999999988
Q ss_pred hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 637 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 637 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
++....+...|+++.|+.++.+++..++..++.++++++.+.. .....+.+.|+++.|..++.+++++++..++|+|+|
T Consensus 278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~n 356 (503)
T d1wa5b_ 278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 356 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH-HHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999987654 445557889999999999999999999999999999
Q ss_pred HhcC-cHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchH
Q 000133 717 LILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATS 795 (2100)
Q Consensus 717 L~~~-~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~ 795 (2100)
++.+ ++....+++.++++.++.++.+++.+++.+|+|+|.++..+.........++...|.+.+++++|.+.+.++. .
T Consensus 357 l~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~-~ 435 (503)
T d1wa5b_ 357 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII-E 435 (503)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH-H
T ss_pred HhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHH-H
Confidence 9865 4566677789999999999999999999999999999998776655555666779999999999998887777 7
Q ss_pred hHHHHHHHHHHcCCC----CCCCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHHhcCCcc
Q 000133 796 EALDALAILSRSGGA----SGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 796 ~al~~L~~L~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
.++.+|.++++.... ..+..+++...++..+.++.|...+.+.++.+++.|..+|++||+++.+
T Consensus 436 ~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~ 503 (503)
T d1wa5b_ 436 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 503 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence 888888888753321 1122344455667778899888888889999999999999999877653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=6.2e-26 Score=289.73 Aligned_cols=408 Identities=17% Similarity=0.187 Sum_probs=339.8
Q ss_pred cCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcc-hhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 184 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 184 ~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
.+.|+.+++.+.+++++.+..|+..|+++.+.+.. ....+++.|++|.|+++|++.++.+++..|+++|++++.++++.
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~ 91 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence 36799999999999999999999999988754443 35778899999999999987666789999999999999988899
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
+..+++.|++|.++.++.+++ ..+++.++++|.|++...+
T Consensus 92 ~~~i~~~~~i~~l~~~L~~~~---------~~~~~~a~~~L~nl~~~~~------------------------------- 131 (434)
T d1q1sc_ 92 TKAVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGDGS------------------------------- 131 (434)
T ss_dssp HHHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTCH-------------------------------
T ss_pred hhHhhhccchhhhhhccccCC---------HHHHHHHHHHHHHHhccch-------------------------------
Confidence 999999999999999998764 6778888888888875321
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCC-----HHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQ 417 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~ 417 (2100)
..+..+.+.++++.++.++...+ ....
T Consensus 132 ------------------------------------------------~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~ 163 (434)
T d1q1sc_ 132 ------------------------------------------------AFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 163 (434)
T ss_dssp ------------------------------------------------HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ------------------------------------------------HHHHHHHHhhhhhHHHHHHHhcccccchHHHH
Confidence 11223444566777777765432 3456
Q ss_pred HHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCC
Q 000133 418 EELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS 497 (2100)
Q Consensus 418 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 497 (2100)
..+++++.+++.+...........+.++.|+.++.+.+++++..++++|++++...++....+...|+++.|++++.+++
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~ 243 (434)
T d1q1sc_ 164 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243 (434)
T ss_dssp HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch
Confidence 67888999998876554444445578999999999999999999999999999766777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchH
Q 000133 498 AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESK 577 (2100)
Q Consensus 498 ~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~ 577 (2100)
++++..++.+|.+++..++..+..+.+.|+++.|+.++++.++.++..++++|.+++.....
T Consensus 244 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~------------------ 305 (434)
T d1q1sc_ 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------------------ 305 (434)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH------------------
T ss_pred hhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccch------------------
Confidence 99999999999999998888888899999999999999999999999999999999763311
Q ss_pred HHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCchHHHHHhh
Q 000133 578 VYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR-KDLRESSIAVKTLWSVMKLL 656 (2100)
Q Consensus 578 ~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~-~~~~~~~~~~g~v~~Lv~lL 656 (2100)
....+.+.++++.++.++.+++++++..|+++|.+++... ++....+.+.|++++|+.++
T Consensus 306 -------------------~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll 366 (434)
T d1q1sc_ 306 -------------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 366 (434)
T ss_dssp -------------------HHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHT
T ss_pred -------------------hHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 1223345677999999999999999999999999998753 45667788999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcC-----CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000133 657 DVGSECILVEASRCLAAIFLS-----VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 716 (2100)
Q Consensus 657 ~~~~~~v~~~aa~aL~~L~~~-----~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~ 716 (2100)
.+++++++..++.+|.++... .....+..+.+.|+++.|-.+..++++++++.|...|.+
T Consensus 367 ~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 367 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999998642 111234457789999999999999999999999888764
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=3.5e-26 Score=292.01 Aligned_cols=416 Identities=13% Similarity=0.143 Sum_probs=339.3
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCC
Q 000133 95 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 174 (2100)
Q Consensus 95 g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~ 174 (2100)
++|+.+++.|.+++++.+..|+.+|+++... ..+.....+++.|++|.|+++|++. .++.++..++++|++++...
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~--~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~la~~~ 88 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSR--EKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGT 88 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHS--SSCCCHHHHHHTTCHHHHHHHTTCG--GGHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CCCchHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999998652 1222234588999999999999753 33458888999999999888
Q ss_pred hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCC----HHHHHHHHH
Q 000133 175 EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE----ASVRAEAAG 250 (2100)
Q Consensus 175 ~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~v~~~Aa~ 250 (2100)
+..+..+++.|+++.++.+|+++++++++.|+++|.+++..++..+..+.+.|+++.|+.++..... ......+++
T Consensus 89 ~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (434)
T d1q1sc_ 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 168 (434)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence 8888889999999999999999999999999999999998888778888899999999999987543 345677888
Q ss_pred HHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhh
Q 000133 251 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 330 (2100)
Q Consensus 251 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 330 (2100)
++.+++.............+.++.++.++.+.+ ..++.+++++|.+++...
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~---------~~~~~~a~~~l~~l~~~~-------------------- 219 (434)
T d1q1sc_ 169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND---------PEVLADSCWAISYLTDGP-------------------- 219 (434)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSC---------HHHHHHHHHHHHHHTSSC--------------------
T ss_pred HHHHHhhcccccchhhhhhhHHHHHHHHHhccc---------cchhhhHHhhhcccchhh--------------------
Confidence 899988755444344445566777777775543 455666666666655321
Q ss_pred hhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhc
Q 000133 331 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 410 (2100)
Q Consensus 331 ~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 410 (2100)
+.....+...|+++.++.++.
T Consensus 220 -----------------------------------------------------------~~~~~~~~~~~~~~~Lv~ll~ 240 (434)
T d1q1sc_ 220 -----------------------------------------------------------NERIEMVVKKGVVPQLVKLLG 240 (434)
T ss_dssp -----------------------------------------------------------HHHHHHHHTTTCHHHHHHHHT
T ss_pred -----------------------------------------------------------hhhHHHHhhcccchhcccccc
Confidence 112234556788999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 490 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv 490 (2100)
++++.++..++.+|.+++.+++.....+.+.|+++.|+.++++++++++..++++|++++....+....+.+.|+++.++
T Consensus 241 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li 320 (434)
T d1q1sc_ 241 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320 (434)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred cchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHH
Confidence 99999999999999999998888888888999999999999999999999999999999987778888899999999999
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh
Q 000133 491 QILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL 569 (2100)
Q Consensus 491 ~lL~~~~~~vre~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL 569 (2100)
+++.+++.+++..|+++|.|++.+ +++....+.+.|++++|++++++.+++++..+.++|.++....+.
T Consensus 321 ~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~---------- 390 (434)
T d1q1sc_ 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK---------- 390 (434)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh----------
Confidence 999999999999999999999975 345667788999999999999999999999999999888542110
Q ss_pred hcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000133 570 TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 633 (2100)
Q Consensus 570 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~ 633 (2100)
.+..+.++..+.+.||++.|-.+..++++++++.|...|-+.+
T Consensus 391 ---------------------~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f 433 (434)
T d1q1sc_ 391 ---------------------LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433 (434)
T ss_dssp ---------------------TTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred ---------------------cCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0111123445667788998888889999999999998886653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.3e-24 Score=279.41 Aligned_cols=411 Identities=14% Similarity=0.151 Sum_probs=346.0
Q ss_pred cCCHHHHHHhHccCCHHHHHHHHHHHHHHhh-cCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh
Q 000133 184 AGGIDILVKLLTLGQSSTQAHVCFLLACMME-EDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 262 (2100)
Q Consensus 184 ~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~ 262 (2100)
...++.++..+.+++.+.+..++..++++.. ........+++.|++|.|+++++.+.+.+++..|+++|.|++.++++.
T Consensus 75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~ 154 (503)
T d1wa5b_ 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 154 (503)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4568999999999999999999999988764 333456788999999999999998777889999999999999988888
Q ss_pred HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHH
Q 000133 263 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 342 (2100)
Q Consensus 263 ~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 342 (2100)
...+.+.|+++.++.++.+++ ..+++.++++|.|++...
T Consensus 155 ~~~~~~~g~i~~l~~lL~s~~---------~~i~~~a~~~L~nia~~~-------------------------------- 193 (503)
T d1wa5b_ 155 TKVVVDADAVPLFIQLLYTGS---------VEVKEQAIWALGNVAGDS-------------------------------- 193 (503)
T ss_dssp HHHHHHTTCHHHHHHHHHHCC---------HHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHhCCChHHHHHHhcCCC---------hhHHHHHHHHHHHHhhhh--------------------------------
Confidence 889999999999999997654 567888888888877521
Q ss_pred HhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHH
Q 000133 343 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVR 422 (2100)
Q Consensus 343 ~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~ 422 (2100)
+..+..+.+.|+++.|+.++.+.++.+++.+++
T Consensus 194 -----------------------------------------------~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~ 226 (503)
T d1wa5b_ 194 -----------------------------------------------TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 226 (503)
T ss_dssp -----------------------------------------------HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHhhcccccchhhcccCCHHHHHHHHH
Confidence 223345566789999999999999999999999
Q ss_pred HHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHH
Q 000133 423 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 502 (2100)
Q Consensus 423 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre 502 (2100)
+|.+++.+...........++++.|+.++.+.+++++..++++|.+++...++....+.+.|+++.|+.++.+++..++.
T Consensus 227 ~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~ 306 (503)
T d1wa5b_ 227 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 306 (503)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhh
Confidence 99999987655444444568899999999999999999999999999977777788899999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHH
Q 000133 503 DSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 582 (2100)
Q Consensus 503 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~ 582 (2100)
.++.+|++++.+++.....+.+.|+++.|..+++++++.+++.++++|+|++..+..
T Consensus 307 ~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~----------------------- 363 (503)
T d1wa5b_ 307 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----------------------- 363 (503)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHH-----------------------
Confidence 999999999988777888888999999999999999999999999999999763311
Q ss_pred HHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHhcCchHHHHHhhcCC
Q 000133 583 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR---KDLRESSIAVKTLWSVMKLLDVG 659 (2100)
Q Consensus 583 aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~---~~~~~~~~~~g~v~~Lv~lL~~~ 659 (2100)
....+.+.++++.++.++.+++.+++..|+|+|.+++.+. ++....+...|++++|+.+|...
T Consensus 364 --------------~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~ 429 (503)
T d1wa5b_ 364 --------------QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA 429 (503)
T ss_dssp --------------HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC
T ss_pred --------------HHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCC
Confidence 1123345678999999999999999999999999998643 34566788999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCc----------hhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000133 660 SECILVEASRCLAAIFLSVR----------ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 719 (2100)
Q Consensus 660 ~~~v~~~aa~aL~~L~~~~~----------~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~ 719 (2100)
+.++...++.+|.++..... ......+.+.|+++.|..+..++++++++.|...|-..+.
T Consensus 430 d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~ 499 (503)
T d1wa5b_ 430 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 499 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 99999999999998863211 1223347788999999888889999999999888876553
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.1e-22 Score=254.93 Aligned_cols=422 Identities=20% Similarity=0.173 Sum_probs=295.0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccC
Q 000133 94 GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS 173 (2100)
Q Consensus 94 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~ 173 (2100)
++.||.||++|++++++++..|+.+|.+++.+ +...+..+.+.|+||.|+++|.+ .++.++..++++|+||+..
T Consensus 1 ~~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~a~~aL~~L~~~ 74 (457)
T d1xm9a1 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFR 74 (457)
T ss_dssp CCCHHHHHHHHHSSCTHHHHHHHHHHHHHTSS---CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCcHHHHHHHHCC---CCHHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999999999973 44558889999999999999976 3456899999999999988
Q ss_pred ChhhHHHHHhcCCHHHHHHhHcc-CCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHh---------------c
Q 000133 174 TEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL---------------G 237 (2100)
Q Consensus 174 ~~~~~~~i~~~g~v~~Lv~lL~s-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL---------------~ 237 (2100)
++..+..+.+.|+++.++.++.+ .+++++..++++|.+++..+. ....+.. .+++.++..+ .
T Consensus 75 ~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 152 (457)
T d1xm9a1 75 STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSR 152 (457)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHH-HHHHHHHHHTTHHHHTCC--------
T ss_pred CHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHh-cccHHHHHHHHhhhhhhhcchhhhhc
Confidence 88888889999999999999865 677899999999999987654 4444444 3444444443 1
Q ss_pred CCCCHHHHHHHHHHHHHhhcCChHhHHHHH-hCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhh
Q 000133 238 SGNEASVRAEAAGALKSLSDHCKDARREIA-GSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISS 316 (2100)
Q Consensus 238 ~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~ 316 (2100)
...+.+++..++++|.+++. +++++.... ..|+++.++.++.+... ...............+.+.........
T Consensus 153 ~~~~~~v~~~a~~~l~~~~~-~~~~~~~~~~~~~~i~~l~~ll~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 226 (457)
T d1xm9a1 153 EVVDPEVFFNATGCLRNLSS-ADAGRQTMRNYSGLIDSLMAYVQNCVA---ASRCDDKSVENCMCVLHNLSYRLDAEV-- 226 (457)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-SHHHHHHHTTSTTHHHHHHHHHHHHHH---HTCTTCTTHHHHHHHHHHHTTTHHHHS--
T ss_pred ccccHHHHHHHHHHHHHHhc-CchHHHHHHHHhccHHHHHHHHhcchh---hhhhHHHHHHHHHHHHhhhhhhhHHHH--
Confidence 23446899999999999998 556666555 45668999988854210 001111222333333333222100000
Q ss_pred ccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhh
Q 000133 317 LGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL 396 (2100)
Q Consensus 317 l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l 396 (2100)
...+..+...... ..........+...........+...+.....++.....+
T Consensus 227 -----------------~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (457)
T d1xm9a1 227 -----------------PTRYRQLEYNARN----------AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp -----------------CCHHHHHHHTC--------------------------------------CCCCCSSCCGGGGG
T ss_pred -----------------HHHHHHHHhhhhh----------hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHH
Confidence 0000000000000 0000001111111111111111111122224455667777
Q ss_pred hccccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCcc-----chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 397 ENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGS-----LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 397 ~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~L~~~~~~-----~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
...+.++.++.++. +.++.++..+..++.+++..... .+..+.+.|+++.|+.+++++++.++..++++|++|+
T Consensus 280 ~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La 359 (457)
T d1xm9a1 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHh
Confidence 78888999988876 55789999999999999876543 2345567889999999999999999999999999999
Q ss_pred cCCcccHHHHHhcCChHHHHHhccCC------CHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcC-ChhHH
Q 000133 471 NENDDSKWAITAAGGIPPLVQILESG------SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGK 543 (2100)
Q Consensus 471 ~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~ 543 (2100)
. +++++..+.+ ++++.|+.+|... +++++..++.+|.+|+..+++++..+.+.|++++|++++++. ++.++
T Consensus 360 ~-~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~ 437 (457)
T d1xm9a1 360 R-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp T-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred h-ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHH
Confidence 5 6777777664 6899999998643 468999999999999988899999999999999999999875 67899
Q ss_pred HHHHHHHHHHhcCCC
Q 000133 544 EIAAKTLNHLIHKSD 558 (2100)
Q Consensus 544 ~~Aa~aL~~L~~~~~ 558 (2100)
+.|+.+|++|+.+.+
T Consensus 438 ~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 438 EAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHcCHh
Confidence 999999999987654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.9e-21 Score=242.21 Aligned_cols=428 Identities=14% Similarity=0.138 Sum_probs=277.3
Q ss_pred CChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcch
Q 000133 140 GVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV 219 (2100)
Q Consensus 140 g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~ 219 (2100)
+.||.|+++|++ .++.++..++.+|+|+|..++..+..+++.||||+|+++|++++++++..|+++|.+|+..++.+
T Consensus 2 ~~ip~lv~~L~~---~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 78 (457)
T d1xm9a1 2 LTIPKAVQYLSS---QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CCHHHHHHHHHS---SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CCHHHHHHHhCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 468999999987 45679999999999999988899999999999999999999999999999999999999888888
Q ss_pred hhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCC-------cchhhhhhh
Q 000133 220 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS-------KEFMQGEYA 292 (2100)
Q Consensus 220 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~-------~e~~~~~~~ 292 (2100)
+..+.+.|+++.|++++.+..+.+++..|+++|++++.. +..+..... .+++.++..+..+. ........+
T Consensus 79 ~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh-hhhHHHHHh-cccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 899999999999999999888889999999999999984 344444444 45555555442210 001122234
Q ss_pred HHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCC
Q 000133 293 QALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP 372 (2100)
Q Consensus 293 ~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~ 372 (2100)
..+++.++.+|.+++...+. ........|.++.++.+++.....
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~--------------~~~~~~~~~~i~~l~~ll~~~~~~---------------------- 200 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAG--------------RQTMRNYSGLIDSLMAYVQNCVAA---------------------- 200 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHH--------------HHHHTTSTTHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHhcCchH--------------HHHHHHHhccHHHHHHHHhcchhh----------------------
Confidence 56777777777766643211 111111122333332222200000
Q ss_pred hHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhC
Q 000133 373 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 452 (2100)
Q Consensus 373 ~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 452 (2100)
..........+...+......++......+..+...... ..........+.
T Consensus 201 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 251 (457)
T d1xm9a1 201 ----------------------SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN-------AYTEKSSTGCFS 251 (457)
T ss_dssp ----------------------TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------
T ss_pred ----------------------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh-------hhhHHHhhhhhh
Confidence 000000011111111111111111111111111111100 011111112222
Q ss_pred CCCHHHH-HHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCC-CHHHHHHHHHHHHHHhcCChh-----hHHHHHhC
Q 000133 453 LSSEQQQ-ECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSED-----IRACVESA 525 (2100)
Q Consensus 453 s~~~~v~-~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~vre~A~~aL~~L~~~~~~-----~~~~i~~~ 525 (2100)
....... ..+...+.+.. ........+...++++.|+.++... ++.+++.+.+++.+++..... .+..+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 330 (457)
T d1xm9a1 252 NKSDKMMNNNYDCPLPEEE-TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330 (457)
T ss_dssp --------------CCCCC-SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHhhhhHHhh-hhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHc
Confidence 2222222 22233333443 4566677777788899999988654 789999999999999865332 34555678
Q ss_pred CcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccc
Q 000133 526 DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 605 (2100)
Q Consensus 526 g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~ 605 (2100)
|+++.|+++++++++.++..++.+|++|+.+.+. +..+ ..+
T Consensus 331 ~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~--------------------------------------~~~i-~~~ 371 (457)
T d1xm9a1 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--------------------------------------HRVM-GNQ 371 (457)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--------------------------------------HHHH-HHH
T ss_pred CChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH--------------------------------------HHHH-HHh
Confidence 9999999999999999999999999999763321 1111 124
Q ss_pred hHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC-CCHHHHHHHHHHHHHHhcC
Q 000133 606 AVETMIKILSS------TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 606 ~i~~Lv~lL~s------~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~aa~aL~~L~~~ 677 (2100)
+++.++.+|.. .+++++..|+.+|.+++..+++.+..+.+.|++++|+.++.+ +++.+++.|+.+|.+|+.+
T Consensus 372 ~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence 68889998853 346899999999999999888999999999999999999965 4678999999999999655
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.3e-18 Score=243.95 Aligned_cols=1075 Identities=13% Similarity=0.073 Sum_probs=582.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCc-cchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 402 KRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 402 i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
+..|++-+.+.|++.|..|+.-|.+.-.... ...... ....++.|+.+|.+++++||..|+.+|+.++...++...
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~-~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH--
Confidence 4456677889999999999998887543221 111111 124688999999999999999999999999864443221
Q ss_pred HhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhCCcHHHHHHHhhc-CChhHHHHHHHHHHHH
Q 000133 481 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI------RACVESADAVPALLWLLKN-GSANGKEIAAKTLNHL 553 (2100)
Q Consensus 481 ~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~------~~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L 553 (2100)
...++.|+..+.+++.+.|..+..+|..+...-+.. ...+ -...++.+...+.+ .++.++..+..+|..+
T Consensus 82 --~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l 158 (1207)
T d1u6gc_ 82 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADM 158 (1207)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 225677888887888889999988888876422111 0100 11123444444433 4567888999999888
Q ss_pred hcCCCC-------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHh-cCCCHHHHHHH
Q 000133 554 IHKSDT-------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKS 625 (2100)
Q Consensus 554 ~~~~~~-------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~s~~~~~~~~A 625 (2100)
.....+ ..++.++..+.+..+.+|..|..||+.+....+... -...++.++..+ .+.+...++.+
T Consensus 159 ~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~-------~~~~~~~ll~~l~~~~~~~~~~~~ 231 (1207)
T d1u6gc_ 159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-------FVDLIEHLLSELSKNDSMSTTRTY 231 (1207)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH-------HHHHHHHHHHHHccCCCHHHHHHH
Confidence 764322 355666667888888999999999998876554321 122366677654 45666777888
Q ss_pred HHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHH
Q 000133 626 ASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE 705 (2100)
Q Consensus 626 a~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~e 705 (2100)
..++..+++..+... ......++|.+.+.+.+.+.+++..+..++..+....+..... .....++.+.+.+.. ++.
T Consensus 232 ~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~ii~~~l~~l~~-dp~ 307 (1207)
T d1u6gc_ 232 IQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP--HVSTIINICLKYLTY-DPN 307 (1207)
T ss_dssp HHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCC-C--
T ss_pred HHHHHHHHHHcchhh-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh--hHHHHHHHHHHHHhc-Ccc
Confidence 899999887543321 1123468999999999999899999999999987665432111 011222333333332 222
Q ss_pred HH-HHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHh
Q 000133 706 VA-EQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSF 784 (2100)
Q Consensus 706 vr-~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~ 784 (2100)
.. ................ ......+.......+.+..+|..++++|..+....+.. +.. .....++.++..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~--l~~--~~~~~~~~L~~~ 379 (1207)
T d1u6gc_ 308 YNYDDEDEDENAMDADGGD----DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM--LPE--FYKTVSPALISR 379 (1207)
T ss_dssp --------------------------------------CTTHHHHHHHHHHHHHHTTCCTT--HHH--HHTTTHHHHHST
T ss_pred hhhhhHHHHHhhhhhhccc----hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH--HHH--HHHHHHHHHHHH
Confidence 21 1111111111111000 01122222223334445568999999999998765542 222 224567788888
Q ss_pred hhhcccccchHhHHHHHHHHHHcCCCCC-----------CCCcccceeeccCCCchhhhhhhccCChhHHHHHHHHHHHH
Q 000133 785 LESASGSVATSEALDALAILSRSGGASG-----------HVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 785 l~s~~~~v~~~~al~~L~~L~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~a~~~L~~L 853 (2100)
+...++.+. ..++.++..+.+...... ...+.....-..+..+..+.+.+.+.++.++..+..++..+
T Consensus 380 l~d~~~~vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l 458 (1207)
T d1u6gc_ 380 FKEREENVK-ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL 458 (1207)
T ss_dssp TSCSSSHHH-HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hcCCchHHH-HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 776666666 888888888776544211 01122223334566777888888999999999999999888
Q ss_pred hcCCcccchhcccccccchHHHHHHHhhcC--CcceecchhhHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhc
Q 000133 854 CRDQPAVLGDEVTGASGCISSIARRVISCT--NPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE 931 (2100)
Q Consensus 854 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~ 931 (2100)
....+......+ +.+.. .+...+..+ ....|..+...+..+.+.+....... +.......+...+.+..
T Consensus 459 ~~~~~~~l~~~l---~~~~~-~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~ 529 (1207)
T d1u6gc_ 459 VNVLPGALTQHI---PVLVP-GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP-----HVQALVPPVVACVGDPF 529 (1207)
T ss_dssp HHHSTTTTGGGH---HHHHH-HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH-----HHTTTHHHHHHHHTCSS
T ss_pred HHHcchHHHHhh---HhhHH-HHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHH-----HHHhhhhhHHHHHcccc
Confidence 543333221111 11111 222223322 33456666666666655533222111 11222233333222111
Q ss_pred CCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCchhHHHHHHHHhccCccchhhhhhccchhhhhhhhhhccc
Q 000133 932 ASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLS 1011 (2100)
Q Consensus 932 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (2100)
.....+++.++..+.+.-. ........ .....+..++..+.......+.-.-..-+++..+...+..
T Consensus 530 -------~~i~~~al~~~~~l~~~l~--~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~--- 596 (1207)
T d1u6gc_ 530 -------YKITSEALLVTQQLVKVIR--PLDQPSSF-DATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN--- 596 (1207)
T ss_dssp -------HHHHHHHHHHHHHHHHHHC--CSSSCCCC-CCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH---
T ss_pred -------HHHHHHHHHHHHHHHHHhh--hhccchhh-hhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---
Confidence 1122334444443322111 00000000 0111122222222111110000000000111111111111
Q ss_pred cccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhhcchhHHhhHhHHHHHHHHHhcCCCCchhhhhccc
Q 000133 1012 QFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSG 1091 (2100)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1091 (2100)
..| .........++.+...++++ ..|..+..++...........+....
T Consensus 597 -----------------------~~~---~~~~~~~~~l~~l~~~l~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l--- 645 (1207)
T d1u6gc_ 597 -----------------------LGD---NLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVL--- 645 (1207)
T ss_dssp -----------------------TGG---GCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHH---
T ss_pred -----------------------hhh---hhHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHhccchhHHHHH---
Confidence 111 01112235666666666655 34555555555444333222211111
Q ss_pred cchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCC--CCCCCchHHHHH
Q 000133 1092 AAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI--PDRPGAPFLALG 1169 (2100)
Q Consensus 1092 ~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~i~~Lv~~l~~~--~~~~~~~~~Al~ 1169 (2100)
......+...+.+..+.. +..++..|..+.....+......++.++..+.+. .........++.
T Consensus 646 -~~~~~~l~~~l~~~~~~~-------------r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~ 711 (1207)
T d1u6gc_ 646 -GEGVPILASFLRKNQRAL-------------KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 711 (1207)
T ss_dssp -HHHHHHHHHHTTSCCHHH-------------HHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHH
T ss_pred -HHHHHHHHHhcccchHHH-------------HHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHH
Confidence 122344444555555555 4566777776666666666666677777666533 111123356777
Q ss_pred HHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcch-HHHHHHHHHHHhh---cCH----HHHhhhc-------------
Q 000133 1170 FLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA-TEEAATDLLGILF---SSA----EIRRHES------------- 1228 (2100)
Q Consensus 1170 ~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~-~~~~~~~ll~~l~---~~~----~~~~~~~------------- 1228 (2100)
.++.+....+..... .....++.++..+.++.... ...+...++..+. .+. .....+.
T Consensus 712 ~l~~l~~~~~~~~~~-~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 790 (1207)
T d1u6gc_ 712 FLTTLAKVYPSSLSK-ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHK 790 (1207)
T ss_dssp HHHHHTTSCGGGGGG-TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCH
T ss_pred HHHHHHhhcchhhhh-HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHH
Confidence 888888777654333 23457788888877652211 1111111111110 000 0000000
Q ss_pred -----ccCcHHH------------HHHHHh-----cCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCCh
Q 000133 1229 -----AFAAVSQ------------LVAVLR-----LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLE 1286 (2100)
Q Consensus 1229 -----~~~al~~------------Li~~L~-----~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 1286 (2100)
-..++.. +..++. ..++..|..|..+|+.++.... ........+.+++.+.++++
T Consensus 791 ~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~---~~~~~~l~~~l~~~l~~~~~ 867 (1207)
T d1u6gc_ 791 QSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID---LSGQLELKSVILEAFSSPSE 867 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC---CCSCTHHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHhCCCCH
Confidence 0001111 111111 1224456666666665542111 11123445777889999999
Q ss_pred hhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHHHHhcCcchH-HHHHhhcChHHHHH
Q 000133 1287 REQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIR-STVAAARCVEPLVS 1365 (2100)
Q Consensus 1287 ~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~~L~~~~~~r-~~~~~~~~i~~Lv~ 1365 (2100)
+++.+|+.+|++++..+.. ..++.+.+.+... ...+......+..+....... ........++.|..
T Consensus 868 ~vr~aAa~aLg~l~~~~~~----------~~lp~il~~l~~~--~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~ 935 (1207)
T d1u6gc_ 868 EVKSAASYALGSISVGNLP----------EYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK 935 (1207)
T ss_dssp HHHHHHHHHHHHHHHHTHH----------HHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHH----------HHhHHHHHHHhcC--chHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 9999999999999865432 2355566666543 344455555555443322111 11111223344444
Q ss_pred HHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHH
Q 000133 1366 LLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIE 1444 (2100)
Q Consensus 1366 lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~ 1444 (2100)
.+.+.++.+|..+++.|++++. ++ ..++|.|...+.+++..+|..++.++..+..+.+..-.... ...++
T Consensus 936 ~~~~~~~~vr~~~a~~lg~L~~~~~--------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l-~~li~ 1006 (1207)
T d1u6gc_ 936 HCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIG 1006 (1207)
T ss_dssp CCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH-HHHST
T ss_pred HhCCCcHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHH
Confidence 4566778899999999999983 22 34689999999999999999999999988877544332222 23566
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHh----------ccC------CCCchhHhHHHHHH
Q 000133 1445 SVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLL----------TRS------EFGPDGQHSALQVL 1508 (2100)
Q Consensus 1445 ~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll----------~~~------~~~~~~~~~A~~~L 1508 (2100)
.+++.|.+++.++|..+..+|..+.++...--.+.....++.++... .+. |+|.+.++.|.+++
T Consensus 1007 ~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~ 1086 (1207)
T d1u6gc_ 1007 DFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECM 1086 (1207)
T ss_dssp TTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHH
Confidence 67788899999999998888877776543221122222333333221 110 25778899999999
Q ss_pred HHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhcc---------
Q 000133 1509 VNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGS--------- 1579 (2100)
Q Consensus 1509 ~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s--------- 1579 (2100)
+.|.+...++. .-..+++.++.-|++. .++|..+...|.++.........-.-...+++|-+.+..
T Consensus 1087 ~~~l~~~~~~~----~~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q 1161 (1207)
T d1u6gc_ 1087 YTLLDSCLDRL----DIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQ 1161 (1207)
T ss_dssp HHHHHSSCSSS----CHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHH
T ss_pred HHHHHHhhhhc----CHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhh
Confidence 99985533332 2234678888888874 589999999999997643221111123577899998843
Q ss_pred ---CCHHHHHHHHHHHHHhhcCC
Q 000133 1580 ---GIHILQQRAVKALVSIALTW 1599 (2100)
Q Consensus 1580 ---~~~~vr~~Al~AL~~Ls~~~ 1599 (2100)
...+.++.++++...|++.+
T Consensus 1162 ~~e~~~e~~~~~~~~~~~l~~~~ 1184 (1207)
T d1u6gc_ 1162 EFEKQDELKRSAMRAVAALLTIP 1184 (1207)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCC
Confidence 12678999999999997654
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.6e-16 Score=208.29 Aligned_cols=569 Identities=14% Similarity=0.076 Sum_probs=383.9
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCCHHHHHHHHHHHHhhhcc---
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE--- 84 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~~~v~~~aa~~L~~L~~~--- 84 (2100)
...+..+++.|++ .++..|..|++.|..++..-+..+. ....+|.|..++.+ +++++..++..|+++...
T Consensus 9 ~~~i~~l~~~l~~--~~~~~R~~a~~~l~~ia~~lg~~~~----~~~lip~l~~~~~~-~~ev~~~~~~~l~~~~~~~~~ 81 (588)
T d1b3ua_ 9 LYPIAVLIDELRN--EDVQLRLNSIKKLSTIALALGVERT----RSELLPFLTDTIYD-EDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp SHHHHHHHHHTTC--SCHHHHHHHHHTHHHHHHHSCHHHH----HHTHHHHHHHTCCC-CHHHHHHHHHHHTTCSGGGTS
T ss_pred hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCcHhh----HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCC
Confidence 4457778888764 4667888999999988765331111 12467888887765 467888888999887632
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHH
Q 000133 85 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 164 (2100)
Q Consensus 85 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~ 164 (2100)
++.. ..-+|++..++.+++..+|..|+.+|..+..... .. ....-.+|.+..+... .....+..+.
T Consensus 82 ~~~~-----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~-----~~-~~~~~l~p~i~~L~~~---~~~~~r~~a~ 147 (588)
T d1b3ua_ 82 PEYV-----HCLLPPLESLATVEETVVRDKAVESLRAISHEHS-----PS-DLEAHFVPLVKRLAGG---DWFTSRTSAC 147 (588)
T ss_dssp GGGG-----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC-----HH-HHHHTHHHHHHHHHTC---SSHHHHHHHG
T ss_pred hhHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC-----HH-HHHHHHHHHHHHHhcc---cchHHHHHHH
Confidence 2211 1236777788888999999999999999987211 11 1223334444444332 1222455555
Q ss_pred HHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHH
Q 000133 165 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASV 244 (2100)
Q Consensus 165 ~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 244 (2100)
..+..+....+.... ...++.+.+++++.++.+|..++..+..++...+ ........++.+..++++.+ ..+
T Consensus 148 ~ll~~~~~~~~~~~~----~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~d~~-~~v 219 (588)
T d1b3ua_ 148 GLFSVCYPRVSSAVK----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLASDEQ-DSV 219 (588)
T ss_dssp GGHHHHTTTSCHHHH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---HHHHHHTHHHHHHHHHTCSC-HHH
T ss_pred HHHHHHHHHhhHHHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHhcCCc-hhh
Confidence 556665543322111 1246788889999999999999999998886543 22333455677777776644 589
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 245 RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 245 ~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
|..|+.+|..++...+.. ......+|.+..++.+++ ..++..++.+|.+++..
T Consensus 220 r~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~---------~~Vr~~~~~~l~~l~~~--------------- 272 (588)
T d1b3ua_ 220 RLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKS---------WRVRYMVADKFTELQKA--------------- 272 (588)
T ss_dssp HTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSS---------HHHHHHHHHTHHHHHHH---------------
T ss_pred HHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhccccc---------HHHHHHHHHhHHHHHHH---------------
Confidence 999999998887532211 111113455555554332 33444444444433210
Q ss_pred CChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHH
Q 000133 325 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 404 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~ 404 (2100)
-. ........++.
T Consensus 273 ---------------------------------------------------------------~~----~~~~~~~l~~~ 285 (588)
T d1b3ua_ 273 ---------------------------------------------------------------VG----PEITKTDLVPA 285 (588)
T ss_dssp ---------------------------------------------------------------HC----HHHHHHTHHHH
T ss_pred ---------------------------------------------------------------hh----hhhhhhhhhHH
Confidence 00 01111235677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCcc-chHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 405 LVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 405 Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
+..++.+.++++|..++.++..++..-.. ......-...++.+...+++.++.++..++.++..++.... .. ....
T Consensus 286 l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~-~~~~ 362 (588)
T d1b3ua_ 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KD-NTIE 362 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HH-HHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hh-HHHH
Confidence 88888899999999999999998865322 22222223567889999999999999999888888763111 11 1223
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-----C
Q 000133 484 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-----D 558 (2100)
Q Consensus 484 g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-----~ 558 (2100)
..+|.+.+++.+.+++++..+...+..+...-.. .. .....+|.+.+++++.+|+++..++.++..++..- .
T Consensus 363 ~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-~~--~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~ 439 (588)
T d1b3ua_ 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD 439 (588)
T ss_dssp HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-hh--hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHH
Confidence 3689999999999999999999888887753211 11 12346788999999999999999999999887532 1
Q ss_pred CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChh
Q 000133 559 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 638 (2100)
Q Consensus 559 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~ 638 (2100)
+...+.+..++.+....+|..|.++|+.+....+... ... ..+|.+..++.+++...|..++.++..+....+
T Consensus 440 ~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~-~~~-----~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~- 512 (588)
T d1b3ua_ 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW-AHA-----TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG- 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH-HHH-----HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH-HHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-
Confidence 2345667777888899999999999999876544322 122 237888889999999999999999998875322
Q ss_pred hHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000133 639 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 718 (2100)
Q Consensus 639 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~ 718 (2100)
........+|.|.+++.++.+.++..++.++..+.....+. .......+.|.+++.+++.+||..|..||..|.
T Consensus 513 --~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 513 --QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp --HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 12334468999999999999999999999999997654322 122335677778899999999999999998764
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.3e-17 Score=231.56 Aligned_cols=1055 Identities=13% Similarity=0.075 Sum_probs=532.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 444 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 523 (2100)
Q Consensus 444 i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~ 523 (2100)
|..|++-+.++|+++|..|+.-|.+......-....-.....++.|+++|.+.++++|..|+.+|..|..+.++...
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~--- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV--- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH---
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH---
Confidence 45667778999999999998877765422111000001123678899999999999999999999999876544321
Q ss_pred hCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-----C----CcHHHHHHH----hh-cCCcchHHHHHHHHHHHHh
Q 000133 524 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-----T----ATISQLTAL----LT-SDLPESKVYVLDALKSMLS 589 (2100)
Q Consensus 524 ~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~----~~i~~L~~l----L~-~~~~~~~~~a~~aL~~l~~ 589 (2100)
...++.|+..+.+++...+..++.+|..+...-. . ...+.++.. +. ..++.++..+..+++.+..
T Consensus 82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~ 160 (1207)
T d1u6gc_ 82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160 (1207)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 2367788888888888889999888887754221 1 112333332 22 3445678888888887766
Q ss_pred ccCch-hHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhc-CCCHHHHHHH
Q 000133 590 VVSFS-DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEA 667 (2100)
Q Consensus 590 ~~~~~-~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~v~~~a 667 (2100)
..+.. .... ...++.++..+.++++.+|..|+.+|..+....++. .....++.++..+. +.+..+++.+
T Consensus 161 ~~g~~l~~~~-----~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~ 231 (1207)
T d1u6gc_ 161 RQGGLLVNFH-----PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTY 231 (1207)
T ss_dssp HTCSSCTTTH-----HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HhhHhhHHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHH
Confidence 44311 0011 223778888899999999999999999998764321 12245777777663 4444567778
Q ss_pred HHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhH
Q 000133 668 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISG 747 (2100)
Q Consensus 668 a~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~ 747 (2100)
+.+++.++...+.. ..-.-...++.+.+.+.+.++++|+.+..++..+....+......-.++++.+.+.++++.+..
T Consensus 232 ~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~ 309 (1207)
T d1u6gc_ 232 IQCIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYN 309 (1207)
T ss_dssp HHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchh
Confidence 88888887654321 1111246788889999999999999999999999844322222223456666666666655433
Q ss_pred HHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCC
Q 000133 748 KTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKS 827 (2100)
Q Consensus 748 ~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~ 827 (2100)
.................. ..................+. ..+...|..+...... ...-.....
T Consensus 310 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~s~~vR-~~a~~~L~~l~~~~~~--------~l~~~~~~~ 372 (1207)
T d1u6gc_ 310 YDDEDEDENAMDADGGDD--------DDQGSDDEYSDDDDMSWKVR-RAAAKCLDAVVSTRHE--------MLPEFYKTV 372 (1207)
T ss_dssp ----------------------------------------CTTHHH-HHHHHHHHHHHTTCCT--------THHHHHTTT
T ss_pred hhhHHHHHhhhhhhccch--------hhhhHHHHHhhhhhhhHHHH-HHHHHHHHhHHHHHHH--------HHHHHHHHH
Confidence 222222211111111110 00011111111122223344 7788888877654332 222234567
Q ss_pred chhhhhhhccCChhHHHHHHHHHHHHhcCCccc---c-hhcccccc-----------cchHHHHHHHhhcCCcceecchh
Q 000133 828 ITPIVSSIADATPLLQDKAIEILSRLCRDQPAV---L-GDEVTGAS-----------GCISSIARRVISCTNPKVKIGGA 892 (2100)
Q Consensus 828 l~~L~~~l~~~~~~~~~~a~~~L~~L~~~~~~~---~-g~~~~~~~-----------~~~~~~~~~~l~s~~~~~r~~~~ 892 (2100)
++.|+..+.+.++.+|..+...+..+....... . -......+ ......+.+.+.+.+..+|..+.
T Consensus 373 ~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~ 452 (1207)
T d1u6gc_ 373 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 452 (1207)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHH
Confidence 888899999999999999999887664221110 0 00111111 11223445566778888888777
Q ss_pred hHHHHHhhhchhhHHhhhhccccchhhHHHHHHHHhhhcCCCCcCCCCChhHHHHHhhhhcccccCCCCCCCCcceecCc
Q 000133 893 ALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGE 972 (2100)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Lv~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 972 (2100)
..+..+.+..... ...+....+..+...+.... ........++.++..+.+. +........+..
T Consensus 453 ~~l~~l~~~~~~~------l~~~l~~~~~~i~~~l~~~~-----~~~~~~~~al~~l~~l~~~-----~~~~~~~~~~~~ 516 (1207)
T d1u6gc_ 453 NMLTELVNVLPGA------LTQHIPVLVPGIIFSLNDKS-----SSSNLKIDALSCLYVILCN-----HSPQVFHPHVQA 516 (1207)
T ss_dssp HHHHHHHHHSTTT------TGGGHHHHHHHHHHHTTCSS-----SCHHHHHHHHHHHHHHHHS-----SCGGGGHHHHTT
T ss_pred HHHHHHHHHcchH------HHHhhHhhHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHh-----ccHHHHHHHHHh
Confidence 7766666542110 11222223333333333221 1112335566666653332 111111112334
Q ss_pred hhHHHHHHHHhccCccchhhhhh-ccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHH
Q 000133 973 NLAIWLLCVLACHDEKCKIVIME-AGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIP 1051 (2100)
Q Consensus 973 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 1051 (2100)
....+..++...++ ++ ..+ .++++.+...+... .... ..+...++..+ .+
T Consensus 517 l~~~~~~~~~~~~~---~i-~~~al~~~~~l~~~l~~~----~~~~-~~~~~~~~~~l--------------------~~ 567 (1207)
T d1u6gc_ 517 LVPPVVACVGDPFY---KI-TSEALLVTQQLVKVIRPL----DQPS-SFDATPYIKDL--------------------FT 567 (1207)
T ss_dssp THHHHHHHHTCSSH---HH-HHHHHHHHHHHHHHHCCS----SSCC-CCCCHHHHHHH--------------------HH
T ss_pred hhhhHHHHHccccH---HH-HHHHHHHHHHHHHHhhhh----ccch-hhhhHHHHHHH--------------------HH
Confidence 44445544443332 11 122 13333333332221 1100 11112222211 22
Q ss_pred HHHHhhc--chhHHhhHhHHHHHHHHHhcCCCCchhhhhccccchhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHH
Q 000133 1052 ILANLLK--SEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALE 1129 (2100)
Q Consensus 1052 ~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1129 (2100)
.+-..+. +.+...+..+..++..+.+.....
T Consensus 568 ~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~----------------------------------------------- 600 (1207)
T d1u6gc_ 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDN----------------------------------------------- 600 (1207)
T ss_dssp HHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-----------------------------------------------
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHhhhh-----------------------------------------------
Confidence 2221221 111111222222222221111000
Q ss_pred hhhhhcccccCccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCchhhhHHHhcCcHHHHHHHHhcCCcchHHHH
Q 000133 1130 RLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEA 1209 (2100)
Q Consensus 1130 ~L~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~Al~~L~~la~~~~~~r~~i~e~G~i~~L~~~L~s~~~~~~~~~ 1209 (2100)
........++.+++.++... .+..+++.+..++.........-.-...++.|...+.+.+...+..+
T Consensus 601 ---------~~~~~~~~l~~l~~~l~~~~----~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~a 667 (1207)
T d1u6gc_ 601 ---------LGSDLPNTLQIFLERLKNEI----TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGT 667 (1207)
T ss_dssp ---------CCTHHHHHHHHHHHHTTSSS----HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 00011223344444443211 12345555555554332211111112345666777766544444433
Q ss_pred HHHHHHHhhcC-HHHHhhhcccCcHHHHHHHHhcCCHHHHHHHHHHHHHhhcchhhhhhhhhcCChHHHHHhhccCChhh
Q 000133 1210 ATDLLGILFSS-AEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLERE 1288 (2100)
Q Consensus 1210 ~~~ll~~l~~~-~~~~~~~~~~~al~~Li~~L~~~~~~~r~~Aa~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~ 1288 (2100)
...+..++... +..... .-...++.+..++.+.+...+..+...|..+...............++.++..+.++....
T Consensus 668 l~~L~~l~~~~~~~~~~~-~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~ 746 (1207)
T d1u6gc_ 668 LSALDILIKNYSDSLTAA-MIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQG 746 (1207)
T ss_dssp HHHHHHHHHHCCTTCCHH-HHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHhccccchhH-HHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhh
Confidence 33333322211 110000 0012233333445556667777777778877654333333334567888888887653322
Q ss_pred H-HHHHHHH-HHhhcCCchhhHHHHhhhcchhHHHHHHHhhc----CC----hhhHHHHHHHHHHHhcCcchHHHHHhhc
Q 000133 1289 Q-HAAIAAL-VRLLSENPSRALAVADVEMNAVDVLCRILSSN----CS----MELKGDAAELCGVLFGNTRIRSTVAAAR 1358 (2100)
Q Consensus 1289 ~-~~A~~aL-~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~----~~----~~~~~~a~~~L~~L~~~~~~r~~~~~~~ 1358 (2100)
. ..++..+ ..+....... .....+.+.+... .. ......+..++..+... ....
T Consensus 747 ~~~~~~~~~~~~l~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-------~~~~ 810 (1207)
T d1u6gc_ 747 GALSAMLDFFQALVVTGTNN---------LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRA-------CPKE 810 (1207)
T ss_dssp HHHHHHHHHHHHHHTTCCTT---------CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHH-------SCCC
T ss_pred hhHHHHHHHHHHHHhccccc---------cchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHh-------hhhh
Confidence 2 1222222 2222211111 1223333333221 11 12222233333332211 0111
Q ss_pred ChHHHHHHH---hc--CCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchh
Q 000133 1359 CVEPLVSLL---VT--EFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSC 1433 (2100)
Q Consensus 1359 ~i~~Lv~lL---~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~ 1433 (2100)
..+.+..++ .+ ..+..+..|+.+|..+...... .........+...+++++.++|.+|..+|+.++..+..
T Consensus 811 ~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~---~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~- 886 (1207)
T d1u6gc_ 811 GPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP- 886 (1207)
T ss_dssp SHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCC---CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH-
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHH-
Confidence 112222222 22 3345677777777776521000 00112346678889999999999999999999876421
Q ss_pred hHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhcc-CC-CCchhHhHHHHHHHHh
Q 000133 1434 KLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTR-SE-FGPDGQHSALQVLVNI 1511 (2100)
Q Consensus 1434 k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~~-~~-~~~~~~~~A~~~L~nL 1511 (2100)
..++.+.+.+.++++. +......+.++....... ......+.++..+-. .. .+..++..+.++|+.|
T Consensus 887 -------~~lp~il~~l~~~~~~-~~~ll~al~ei~~~~~~~---~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L 955 (1207)
T d1u6gc_ 887 -------EYLPFVLQEITSQPKR-QYLLLHSLKEIISSASVV---GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 955 (1207)
T ss_dssp -------HHHHHHHHHHHSCGGG-HHHHHHHHHHHHHSSCST---TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHH
T ss_pred -------HHhHHHHHHHhcCchH-HHHHHHHHHHHHHhcchh---hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 1467777777665433 333333444443332221 111123344433321 11 2366777789999987
Q ss_pred hcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhccccccccccccCchHHHHHHhccCCHHHHHHHHHH
Q 000133 1512 LEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKA 1591 (2100)
Q Consensus 1512 ~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~A 1591 (2100)
.. ......++.|..+|.++++.+|..++.++..+..+......-.-...+++++.+|++.+.++|+.|+.+
T Consensus 956 ~~---------~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~ 1026 (1207)
T d1u6gc_ 956 TL---------IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVT 1026 (1207)
T ss_dssp HH---------SSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHH
T ss_pred Hh---------cCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 42 244567899999999999999999999999886542221111112456778889999999999999999
Q ss_pred HHHhhcCChhHHHhccChHHHHHHhccc--------------------CCCchHHHHHHHHHHHHhhhcccch-hhhccc
Q 000133 1592 LVSIALTWPNEIAKEGGVTELSKIILQA--------------------DPSLPHALWESAASVLSSILQFSSE-FYLEVP 1650 (2100)
Q Consensus 1592 L~~Ls~~~~n~l~~~G~i~~Ll~lL~~~--------------------~~~~~~~l~e~a~~~L~~i~~~~~~-~~~~~~ 1650 (2100)
|..+....|.-+.. .++.++..+... |+ ...+++.|-..+..+.+..-+ ....+-
T Consensus 1027 l~~~~~~~p~li~~--~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~--gl~~rk~a~e~~~~~l~~~~~~~~~~~~ 1102 (1207)
T d1u6gc_ 1027 FNSAAHNKPSLIRD--LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD--GLDIRKAAFECMYTLLDSCLDRLDIFEF 1102 (1207)
T ss_dssp HHHHHHHCGGGTGG--GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEET--HHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHhChHHHHH--HHHHHHHHHHHHhccchhheeeeecCCceeecCC--cHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 99999776652211 234444444321 11 124555555666655533211 111122
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhccCCh
Q 000133 1651 VAVLVRLLRSGSEGTVIGSLNALLVLESDDG 1681 (2100)
Q Consensus 1651 v~~Lv~ll~~~~~~~~~~a~~aL~~L~~~~~ 1681 (2100)
+..++..+.+ +.+++.-+...|..|..-.+
T Consensus 1103 ~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~ 1132 (1207)
T d1u6gc_ 1103 LNHVEDGLKD-HYDIKMLTFLMLVRLSTLCP 1132 (1207)
T ss_dssp HHHHHHTTSS-CHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcccc-hHHHHHHHHHHHHHHHHhCc
Confidence 3344444444 35677777777776655444
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.4e-16 Score=210.85 Aligned_cols=564 Identities=12% Similarity=0.100 Sum_probs=392.0
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccC--C
Q 000133 97 IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS--T 174 (2100)
Q Consensus 97 i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~--~ 174 (2100)
|..|+.-|++++...|..|++.|..++.. .|.. -.....+|.|.+.+.. +++ +...+...|.++... .
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~-----lg~~-~~~~~lip~l~~~~~~---~~e-v~~~~~~~l~~~~~~~~~ 81 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALA-----LGVE-RTRSELLPFLTDTIYD---EDE-VLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHH-----SCHH-HHHHTHHHHHHHTCCC---CHH-HHHHHHHHHTTCSGGGTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH-----hCcH-hhHHHHHHHHHHHhcC---cHH-HHHHHHHHHHHHHHHcCC
Confidence 55677888999999999999999988761 1111 1234568888887754 333 444556667766532 1
Q ss_pred hhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000133 175 EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKS 254 (2100)
Q Consensus 175 ~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~ 254 (2100)
+.+ -...++++..++.++++.+|..|+.+|..+..... ...+....+|.+..+..+ .....|..|+..+..
T Consensus 82 ~~~-----~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~---~~~~~~~l~p~i~~L~~~-~~~~~r~~a~~ll~~ 152 (588)
T d1b3ua_ 82 PEY-----VHCLLPPLESLATVEETVVRDKAVESLRAISHEHS---PSDLEAHFVPLVKRLAGG-DWFTSRTSACGLFSV 152 (588)
T ss_dssp GGG-----GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---HHHHHHTHHHHHHHHHTC-SSHHHHHHHGGGHHH
T ss_pred hhH-----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 122 13457788888899999999999999988875433 122233345544455554 445678888888888
Q ss_pred hhcCC-hHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhh
Q 000133 255 LSDHC-KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 333 (2100)
Q Consensus 255 Ls~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~ 333 (2100)
+.... +..+..+ ++.+..++.+.+ +.+++.++.++..++...+. ..
T Consensus 153 ~~~~~~~~~~~~l-----~~~~~~l~~D~~---------~~VR~~a~~~l~~~~~~~~~---------------~~---- 199 (588)
T d1b3ua_ 153 CYPRVSSAVKAEL-----RQYFRNLCSDDT---------PMVRRAAASKLGEFAKVLEL---------------DN---- 199 (588)
T ss_dssp HTTTSCHHHHHHH-----HHHHHHHHTCSC---------HHHHHHHHHHHHHHHHTSCH---------------HH----
T ss_pred HHHHhhHHHHHHH-----HHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhcH---------------HH----
Confidence 76532 2333332 566777776554 77888888888877642110 00
Q ss_pred hhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC-CccchhhhccccHHHHHHhhcCC
Q 000133 334 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMA 412 (2100)
Q Consensus 334 ~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~-~~~~~~l~~~g~i~~Lv~lL~~~ 412 (2100)
....+.+.+..+++... ..+|..++.++..+... +.. . .....++.+..++++.
T Consensus 200 ---------------------~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~-~--~~~~i~~~l~~~~~D~ 254 (588)
T d1b3ua_ 200 ---------------------VKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-D--LEALVMPTLRQAAEDK 254 (588)
T ss_dssp ---------------------HHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-H--HHHHTHHHHHHHHTCS
T ss_pred ---------------------HHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH-H--HHHHHHHHHHHhcccc
Confidence 01245566666665544 45799999999988432 211 1 1122467788888899
Q ss_pred CHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCc-ccHHHHHhcCChHHHHH
Q 000133 413 TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLVQ 491 (2100)
Q Consensus 413 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~-~~~~~i~~~g~i~~Lv~ 491 (2100)
++.+|..++.+|.+++..-.. .+.....++.+..++++.+++++..++.++..++.... .......-...+|.+..
T Consensus 255 ~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~ 331 (588)
T d1b3ua_ 255 SWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 999999999999998764222 22234678999999999999999999999998875322 23333444557888999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-----CCcHHHHH
Q 000133 492 ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-----TATISQLT 566 (2100)
Q Consensus 492 lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~-----~~~i~~L~ 566 (2100)
++.+.++.+|..++.++..++..-.. . ......+|.+..++++.++.++..+...+..+...-. ...+|.+.
T Consensus 332 ~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~ 408 (588)
T d1b3ua_ 332 LVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIV 408 (588)
T ss_dssp HHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHH
T ss_pred hhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHH
Confidence 99999999999998888777632111 1 1123468999999999999999999888877765332 24556677
Q ss_pred HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000133 567 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV 646 (2100)
Q Consensus 567 ~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~ 646 (2100)
.++.+.++.+|..+.++++.++...+... ......+.+..++.++...+|..|+++|..++.... ......
T Consensus 409 ~~~~d~~~~~r~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~---~~~~~~ 479 (588)
T d1b3ua_ 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEF------FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG---KEWAHA 479 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGG------CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---HHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHcChHh------HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhC---cHHHHH
Confidence 78889999999999999998876433221 122336777888999999999999999999985321 112234
Q ss_pred CchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHH
Q 000133 647 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK 726 (2100)
Q Consensus 647 g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~ 726 (2100)
..+|.+.+++.+++...+..++.++..+....+ . .......+|.|.+++.++.+.||..++++|..+...-+. +
T Consensus 480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~-~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~--~ 553 (588)
T d1b3ua_ 480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---Q-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--S 553 (588)
T ss_dssp HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--H
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---h-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc--H
Confidence 578999999999999999999999988854321 1 133456899999999999999999999999999743221 2
Q ss_pred HHHcCcHHHHHHHHccCChhHHHHHHHHHHHH
Q 000133 727 AIAEEIILPATRVLCEGTISGKTLAAAAIARL 758 (2100)
Q Consensus 727 ~v~~~~v~~L~~ll~~~~~~~~~~Aa~aL~~l 758 (2100)
.+...+.+.|.++.++++.++|..|.+||..|
T Consensus 554 ~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 23455677788888888888999999998765
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.7e-15 Score=171.67 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=172.6
Q ss_pred CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHH-hhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHH
Q 000133 411 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS-LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 489 (2100)
Q Consensus 411 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~-lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~L 489 (2100)
..+.+.+..|+.+|.+|+.+ .++...+...||+++++. ++++++++++..|+++|++++.+++..+..+.+.|++|.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 44678899999999999965 667788889999999886 7889999999999999999998788889999999999999
Q ss_pred HHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 000133 490 VQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL 568 (2100)
Q Consensus 490 v~lL~-~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l 568 (2100)
++++. +.++.++..++++|.+++.+++..+..+...|+++.|+++++++++.++..++++|++++...+.
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~--------- 177 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE--------- 177 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG---------
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHH---------
Confidence 99996 45899999999999999999899999999999999999999999999999999999999763321
Q ss_pred hhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 000133 569 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA 645 (2100)
Q Consensus 569 L~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~ 645 (2100)
.+..+.+.+++|.|+.+++++++++|+.|+++|.+|+..++........
T Consensus 178 ----------------------------~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 178 ----------------------------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp ----------------------------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred ----------------------------HHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1224456788999999999999999999999999999987776555543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.8e-15 Score=172.09 Aligned_cols=185 Identities=18% Similarity=0.178 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHHhCCCccchhhhccccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh
Q 000133 373 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVG-LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 451 (2100)
Q Consensus 373 ~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 451 (2100)
+..+..|..+|..|..+.+++..+...|+++.++. +++++++++|..|+++|++++.+++..+..+.+.|++|.|+.++
T Consensus 31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL 110 (264)
T d1xqra1 31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 110 (264)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 44688899999999988889899999999999875 77889999999999999999999888889999999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHH
Q 000133 452 G-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 530 (2100)
Q Consensus 452 ~-s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 530 (2100)
. ..++.++..++++|.+++.+++..+..+...||++.|++++.+++..++..++++|++++..+++.+..+.+.|++|.
T Consensus 111 ~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~ 190 (264)
T d1xqra1 111 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 190 (264)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence 6 567889999999999999888999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000133 531 LLWLLKNGSANGKEIAAKTLNHLIHKS 557 (2100)
Q Consensus 531 Lv~lL~~~~~~~~~~Aa~aL~~L~~~~ 557 (2100)
|+.+++++++.+++.++++|++|+...
T Consensus 191 L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 191 LVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998643
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.3e-13 Score=185.02 Aligned_cols=722 Identities=12% Similarity=0.077 Sum_probs=394.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccc--
Q 000133 58 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI-- 135 (2100)
Q Consensus 58 ~L~~lL~~~~~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~-- 135 (2100)
.++..|.+.+..+|..++.+++.++....... =...+|.|+..+.+++...+..|..+|..++.... .......
T Consensus 92 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~---Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~-~~~~~~~~~ 167 (888)
T d1qbkb_ 92 ECLNNIGDSSPLIRATVGILITTIASKGELQN---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA-EILDSDVLD 167 (888)
T ss_dssp HHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCS---STTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGH-HHHHTC---
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhH-HHhhHHHHH
Confidence 34455555555566556666666553221000 01356777777777777788888888888875110 0000000
Q ss_pred hhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhc
Q 000133 136 FSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEE 215 (2100)
Q Consensus 136 ~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~ 215 (2100)
-.-...+|.++..+.+.. +.++..+..++..+............ ...++.+..++.+++++++..++.+|..+...
T Consensus 168 ~~~~~ll~~ll~~~~~~~---~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 243 (888)
T d1qbkb_ 168 RPLNIMIPKFLQFFKHSS---PKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEEPEVRKNVCRALVMLLEV 243 (888)
T ss_dssp CCSTTTTHHHHTGGGSSS---SCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCS
T ss_pred HHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 012336788887776533 33555666777766544322111111 24677888888889999999999999777654
Q ss_pred CcchhhHHhhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHH
Q 000133 216 DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQAL 295 (2100)
Q Consensus 216 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l 295 (2100)
..+..... -.+.++.+++.+.+ .+.+++..|+..+..++. ....+..+. ..++.++..+...... .. ..+
T Consensus 244 ~~~~l~~~-l~~i~~~~l~~~~~-~~e~v~~~a~ef~~~~~e-~~~~~~~~~--~~l~~l~~~l~~~~~~----~~-~~~ 313 (888)
T d1qbkb_ 244 RMDRLLPH-MHNIVEYMLQRTQD-QDENVALEACEFWLTLAE-QPICKDVLV--RHLPKLIPVLVNGMKY----SD-IDI 313 (888)
T ss_dssp CTTTTTTT-TTTTTTTTTTTTTS-SCHHHHHHHHHHHCCCCS-GGGGTTTTT--TSTTTTTTTTTTSSCC----SS-TTH
T ss_pred hHHHHHHH-HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHH-hhhhHHHHH--HHHHHHHHHHHHHhhc----ch-HHH
Confidence 44322111 12344445555554 346899999888777764 222222211 1233333322211100 00 000
Q ss_pred HHHHHHHHHHhhCCCcchh----hhcccccc------CCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHh
Q 000133 296 QENAMCALANISGGLSNVI----SSLGQSLE------SCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVN 365 (2100)
Q Consensus 296 ~~~a~~aL~nl~~~~~~~i----~~l~~~~~------~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~ 365 (2100)
.. ..........+ ..+..... ........... . .. ..+ ... .
T Consensus 314 ~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~---~~~-~~~------~--------- 365 (888)
T d1qbkb_ 314 IL------LKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEE-D--DD---DDE-IDD------D--------- 365 (888)
T ss_dssp HH------HTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC------C--HH---HHT-TCC------C---------
T ss_pred HH------HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhc-c--cc---hhh-hhh------h---------
Confidence 00 00000000000 00000000 00000000000 0 00 000 000 0
Q ss_pred hcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHH
Q 000133 366 QFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQ 445 (2100)
Q Consensus 366 lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 445 (2100)
.......++..++.+|..++.... +.+. .-.++.+.+.+.++++..|+.|+.+++.++.+..+...... ...++
T Consensus 366 --~~~~~~~~r~~a~~~L~~l~~~~~--~~il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~ 439 (888)
T d1qbkb_ 366 --DTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIP 439 (888)
T ss_dssp --STTSCCSSHHHHHHHSTTTTTTCC--SSSH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHH
T ss_pred --hhhhhhhHHHHHHHHHhhHhhhhH--HHHH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhH
Confidence 001112245666666655543211 1111 11345556677888999999999999998875432111111 13578
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHh
Q 000133 446 LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED-IRACVES 524 (2100)
Q Consensus 446 ~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~-~~~~i~~ 524 (2100)
.|+..++++++.+|..++++|+.++.........-.-...++.++..+.++++.+++.|+++|.+++..... ....+
T Consensus 440 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-- 517 (888)
T d1qbkb_ 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-- 517 (888)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--
Confidence 899999999999999999999988742222222223345788899999999999999999999999853111 11111
Q ss_pred CCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-----CCCcHH----HHHHHhh--cCCcchHHHHHHHHHHHHhccCc
Q 000133 525 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-----DTATIS----QLTALLT--SDLPESKVYVLDALKSMLSVVSF 593 (2100)
Q Consensus 525 ~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~-----~~~~i~----~L~~lL~--~~~~~~~~~a~~aL~~l~~~~~~ 593 (2100)
...++.|+..++..+.+.+..+..++..++... .+..++ .+..... ..+........++++.+......
T Consensus 518 ~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~ 597 (888)
T d1qbkb_ 518 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS 597 (888)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHH
Confidence 224577777777777777777777777665321 112222 2333222 12233445567777776553321
Q ss_pred h--hHHHHhhhccchHHHHHHHh-------------cCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCchHHHHHhhc
Q 000133 594 S--DILREGSAANDAVETMIKIL-------------SSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLD 657 (2100)
Q Consensus 594 ~--~~~~~~i~~~~~i~~Lv~lL-------------~s~~~~~~~~Aa~aL~~L~~~~~~-~~~~~~~~g~v~~Lv~lL~ 657 (2100)
. ......+. ..+..+...+ ...+.+....+...+..+...-.. ....+.....++.+...+.
T Consensus 598 ~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~ 675 (888)
T d1qbkb_ 598 GFLPYCEPVYQ--RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 675 (888)
T ss_dssp TTHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT
T ss_pred HHhhhHHHHHH--HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC
Confidence 1 10111100 0011111111 123456666677777777643222 2223344567888888899
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHH
Q 000133 658 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPAT 737 (2100)
Q Consensus 658 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~ 737 (2100)
+.+..++..+..+++.++.+....-+. .-...++.|.+.+.++..+++..++++++.|+..-....+..-+.+++.|+
T Consensus 676 ~~~~~vr~~a~~llgdl~~~~~~~~~~--~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~ 753 (888)
T d1qbkb_ 676 DKMPEVRQSSFALLGDLTKACFQHVKP--CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV 753 (888)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999999987665432111 112356777788888899999999999999983322222223357899999
Q ss_pred HHHccCChh--HHHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCC
Q 000133 738 RVLCEGTIS--GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVK 815 (2100)
Q Consensus 738 ~ll~~~~~~--~~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~ 815 (2100)
+.++..+.. ++.+++-+|+++....+.. +.. .-...+++.+..+...++..-.+.++..|..+.+..+.
T Consensus 754 ~il~~~~~~~~v~~n~~~~lgrl~~~~p~~--~~~--~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~----- 824 (888)
T d1qbkb_ 754 EIINRPNTPKTLLENTAITIGRLGYVCPQE--VAP--MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS----- 824 (888)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHCHHH--HGG--GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG-----
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHHHCHHH--HHh--hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH-----
Confidence 999876543 8899999999998765532 222 12446778888887765443346777777777654432
Q ss_pred cccceeeccCCCchhhhhhhccC---ChhHHHHHHHHHHHH
Q 000133 816 PAWQVLAEFPKSITPIVSSIADA---TPLLQDKAIEILSRL 853 (2100)
Q Consensus 816 ~~~~~~~~~~~~l~~L~~~l~~~---~~~~~~~a~~~L~~L 853 (2100)
.+ ...+..++.+.... .+.+++...++|..+
T Consensus 825 ---~~----~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 858 (888)
T d1qbkb_ 825 ---GV----IQDFIFFCDAVASWINPKDDLRDMFCKILHGF 858 (888)
T ss_dssp ---GT----GGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred ---HH----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 00 12233344444443 478888888888877
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.2e-13 Score=189.00 Aligned_cols=713 Identities=13% Similarity=0.084 Sum_probs=390.2
Q ss_pred CchHHHHHHHhcCC---HHHHHHHHHHHHhhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc
Q 000133 54 QAVPVLVSLLRSGS---LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 130 (2100)
Q Consensus 54 g~v~~L~~lL~~~~---~~v~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~ 130 (2100)
..+..|+.+|+... .++|..|-..|..+...++-. ..+..++.-+.+.+..+|..|+..|+|.-...-...
T Consensus 8 ~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~------~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~ 81 (888)
T d1qbkb_ 8 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFN------NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF 81 (888)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTT------TCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCS
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccC
Confidence 56777888887654 467777777777765433210 122222333344566688888777776433110000
Q ss_pred ccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccC-ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHH
Q 000133 131 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 209 (2100)
Q Consensus 131 ~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~-~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L 209 (2100)
..-..+.+-..++..|.+ .++.++..+..++..++.. ....|. ..++.|++++.++++.++..+..+|
T Consensus 82 ---~~~~~~~Ik~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~Wp-----ell~~L~~~l~s~~~~~~~~al~~L 150 (888)
T d1qbkb_ 82 ---PNGVTDFIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFGAL 150 (888)
T ss_dssp ---TTTCCHHHHHHHTTGGGC---CCSSTTTTTTTTTHHHHTTTSSCSST-----TTSTTTTTSSTGGGSSCSSSSSTTT
T ss_pred ---CHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHhCccchH-----HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000111122334444543 2333555555555555532 223444 3577888888888888888888888
Q ss_pred HHHhhcCcchhh-HH---hhhchHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcc
Q 000133 210 ACMMEEDVSVCS-RV---LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKE 285 (2100)
Q Consensus 210 ~~L~~~~~~~~~-~i---~~~g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e 285 (2100)
..++........ .. .-...++.+++.+.+.+ ..+|..|+.++..+....+..-.... ..-++.++.....++
T Consensus 151 ~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~-- 226 (888)
T d1qbkb_ 151 QKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEE-- 226 (888)
T ss_dssp HHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSS-SCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCC--
T ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcc--
Confidence 777643221100 00 01235778888887755 46888888888877654332100001 123555565555443
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhCCCcc-hhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHH
Q 000133 286 FMQGEYAQALQENAMCALANISGGLSN-VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLV 364 (2100)
Q Consensus 286 ~~~~~~~~~l~~~a~~aL~nl~~~~~~-~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv 364 (2100)
..++..++.+|..+...... ....+ ..+.+.+.
T Consensus 227 -------~~vr~~~~~~l~~l~~~~~~~l~~~l---------------------------------------~~i~~~~l 260 (888)
T d1qbkb_ 227 -------PEVRKNVCRALVMLLEVRMDRLLPHM---------------------------------------HNIVEYML 260 (888)
T ss_dssp -------SSSTTHHHHTTTTTSCSCTTTTTTTT---------------------------------------TTTTTTTT
T ss_pred -------hHHHHHHHHHHHHHHHHhHHHHHHHH---------------------------------------HHHHHHHH
Confidence 33455566666544331110 00000 01111122
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhCCCccchhhhcc--ccHHHHHHh----------------------------------
Q 000133 365 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS--EAKRLLVGL---------------------------------- 408 (2100)
Q Consensus 365 ~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~--g~i~~Lv~l---------------------------------- 408 (2100)
..+++ .++.++..|++.+..+...+.....+... ..++.+...
T Consensus 261 ~~~~~-~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 339 (888)
T d1qbkb_ 261 QRTQD-QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHR 339 (888)
T ss_dssp TTTTS-SCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCC
T ss_pred HhcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 22222 23334555554443332211110000000 000000000
Q ss_pred -----------------------hc---CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHH
Q 000133 409 -----------------------IT---MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECS 462 (2100)
Q Consensus 409 -----------------------L~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A 462 (2100)
-. .....++..+..+|..++...++. +. .-.++.+...+.+++...|+.|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~---il-~~~l~~l~~~l~s~~~~~reaa 415 (888)
T d1qbkb_ 340 SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESG 415 (888)
T ss_dssp CCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS---SH-HHHHHHHHHTTTSSSHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH---HH-HHHHHHHHHhhccchhHHHHHH
Confidence 00 011235667777777666543221 11 0134566667788899999999
Q ss_pred HHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCcHHHHHHHhhcCChh
Q 000133 463 VALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNGSAN 541 (2100)
Q Consensus 463 ~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~ 541 (2100)
+.+|+.++.+..+..... -...++.|+..+.+.++.+|..++|+|+.++.... ..... .-...++.++..+.+.+++
T Consensus 416 ~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~ 493 (888)
T d1qbkb_ 416 ILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKR 493 (888)
T ss_dssp HHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHH
T ss_pred HHHhhhhhhhHHHHhccc-chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHH
Confidence 999999985433221111 12357889999999999999999999998875211 11111 1256889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-------CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccC----chhHHHHhhhccchHHHH
Q 000133 542 GKEIAAKTLNHLIHKSDT-------ATISQLTALLTSDLPESKVYVLDALKSMLSVVS----FSDILREGSAANDAVETM 610 (2100)
Q Consensus 542 ~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~----~~~~~~~~i~~~~~i~~L 610 (2100)
++..|+++|.+++....+ ..++.++..+.....+.+..+.++++.+..... .++.... .++.+
T Consensus 494 V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~------l~~~l 567 (888)
T d1qbkb_ 494 VQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM------LMPPL 567 (888)
T ss_dssp HHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHH------HHHHH
Confidence 999999999999864432 334556666776677777778888887765322 1121111 14444
Q ss_pred HHHhcC--CCHHHHHHHHHHHHHHhcCChh----hHHHHHhcCchHHHHHh--------h-----cCCCHHHHHHHHHHH
Q 000133 611 IKILSS--TKEETQAKSASALAGIFETRKD----LRESSIAVKTLWSVMKL--------L-----DVGSECILVEASRCL 671 (2100)
Q Consensus 611 v~lL~s--~~~~~~~~Aa~aL~~L~~~~~~----~~~~~~~~g~v~~Lv~l--------L-----~~~~~~v~~~aa~aL 671 (2100)
...... .++........++..+...... +...+.. ..+..+... . ...+......+...+
T Consensus 568 ~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 646 (888)
T d1qbkb_ 568 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 646 (888)
T ss_dssp HHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 443321 2222333445556555432211 1111110 011111111 1 123445666666677
Q ss_pred HHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCChhHHHHH
Q 000133 672 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 672 ~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
..+...........+.....++.+...+.+.++++|+.|..+++.|+..........-+.+++.|.+.++++..+++.+|
T Consensus 647 ~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a 726 (888)
T d1qbkb_ 647 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNA 726 (888)
T ss_dssp HHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 76654322222222334557788889999999999999999999987332211111224578888888888888899999
Q ss_pred HHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcc-cccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchh
Q 000133 752 AAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITP 830 (2100)
Q Consensus 752 a~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~-~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (2100)
+|+++.+....+. .+.. .....+..++..++..+ ...+.+++..+|..++...+. .+.--.+..+.+
T Consensus 727 ~~~ig~ia~~~~~--~~~p--y~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~--------~~~~~l~~~~~~ 794 (888)
T d1qbkb_ 727 TWAIGEISIQMGI--EMQP--YIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ--------EVAPMLQQFIRP 794 (888)
T ss_dssp HHHHHHHHHHTGG--GGGG--GSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH--------HHGGGGGGTHHH
T ss_pred HHHHHHHHHHHHH--Hhhh--hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH--------HHHhhHHHHHHH
Confidence 9999999875543 2333 22456778888888765 332338888888888654432 111124556777
Q ss_pred hhhhhccC-ChhHHHHHHHHHHHHhcCCcc
Q 000133 831 IVSSIADA-TPLLQDKAIEILSRLCRDQPA 859 (2100)
Q Consensus 831 L~~~l~~~-~~~~~~~a~~~L~~L~~~~~~ 859 (2100)
+++.+... +..-++.|...+..+-..+|.
T Consensus 795 ~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~ 824 (888)
T d1qbkb_ 795 WCTSLRNIRDNEEKDSAFRGICTMISVNPS 824 (888)
T ss_dssp HHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence 77777763 445577788877777554443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=1.6e-08 Score=138.23 Aligned_cols=773 Identities=13% Similarity=0.062 Sum_probs=400.8
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcC--CHHHHHHHHHHHHhhhccc
Q 000133 8 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN 85 (2100)
Q Consensus 8 ~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~--~~~v~~~aa~~L~~L~~~~ 85 (2100)
.+++.++++... .+.++..|..|-..|..+.+... .+.+..|+..+.+. +..+|..|+..|.+.....
T Consensus 3 ~~~~~~~L~~~~-~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~ 72 (861)
T d2bpta1 3 TAEFAQLLENSI-LSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence 356666666532 24467788889888988775432 24667888888754 4578888888887765322
Q ss_pred hh--hHH----HH-------hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhcc
Q 000133 86 EL--RVK----VL-------LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 152 (2100)
Q Consensus 86 ~~--~~~----i~-------~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~ 152 (2100)
.. ... .. ....-..++..|.++++.+|..++.++..++....++. .+ ...+|.|++.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~----~w--peli~~L~~~~~s~ 146 (861)
T d2bpta1 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG----AW--PELMKIMVDNTGAE 146 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT----CC--HHHHHHHHHHTSTT
T ss_pred cchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC----ch--HHHHHHHHHHhcCC
Confidence 11 000 00 00113456677788899999999999998886211100 00 12344555554432
Q ss_pred CCCcchHHHHHHHHHHHhccCChhhHHHHHh--cCCHHHHHHhHc--cCCHHHHHHHHHHHHHHhhcCcchhh-HHhhhc
Q 000133 153 LKSGNVVDNLLTGALRNLSTSTEGFWAATVQ--AGGIDILVKLLT--LGQSSTQAHVCFLLACMMEEDVSVCS-RVLAAD 227 (2100)
Q Consensus 153 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~--~g~v~~Lv~lL~--s~~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g 227 (2100)
....++..+..+|..++...+.....+.. ...+..++..+. ..+..++..+..++.++......... ......
T Consensus 147 --~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T d2bpta1 147 --QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp --SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhH
Confidence 22335556777888876432211110110 012333344343 35678999999999887755443211 112234
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChHh-HHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHh
Q 000133 228 ATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 306 (2100)
Q Consensus 228 ~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl 306 (2100)
.++.+...+..+ +.+++..+..+|..+....++. ...+. ..+..+....... .+..++..+...+..+
T Consensus 225 ~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~l~~l~~~~~~~--------~~~~v~~~~~~~l~~l 293 (861)
T d2bpta1 225 LMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKS--------PNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTC--------SSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC--------ccHHHHHHHHHHHHHH
Confidence 566677777664 4689999999999987633221 11111 1122222222111 1245556666655544
Q ss_pred hCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 000133 307 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 386 (2100)
Q Consensus 307 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L 386 (2100)
+......... ..+........+. ...+. ..
T Consensus 294 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~--~~~~~-----------------l~----- 323 (861)
T d2bpta1 294 CEEEIDIAYE--------------------------LAQFPQSPLQSYN--FALSS-----------------IK----- 323 (861)
T ss_dssp HHHHHHHHHH--------------------------HHHCTTCSCCCCC--HHHHH-----------------HH-----
T ss_pred HHHHHHHHHH--------------------------HHhhhhhHHHHHH--HHHHH-----------------HH-----
Confidence 4210000000 0000000000000 00000 00
Q ss_pred hCCCccchhhhccccHHHHHHhhc-------CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHH
Q 000133 387 YGNPLLSIKLENSEAKRLLVGLIT-------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQ 459 (2100)
Q Consensus 387 ~~~~~~~~~l~~~g~i~~Lv~lL~-------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~ 459 (2100)
..++.+...+. ..+...+..+..++..++...+... . .-..+.+...+.+.+...+
T Consensus 324 -------------~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 386 (861)
T d2bpta1 324 -------------DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---L-EPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp -------------HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHH
T ss_pred -------------HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh---h-hhhcchhhhhhhhHHHHHH
Confidence 01222222221 1234566777777777765533211 0 0123445556678889999
Q ss_pred HHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhh---
Q 000133 460 ECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK--- 536 (2100)
Q Consensus 460 ~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--- 536 (2100)
+.+..++..+............-...++.+++.+.+.++.+|+.++++++.++...+. .+.....++.++..+.
T Consensus 387 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~ 463 (861)
T d2bpta1 387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhcc
Confidence 9999999999854433333333344788999999999999999999999999853111 1112333444443332
Q ss_pred cCChhHHHHHHHHHHHHhcCCC---C--------CcHHHHHHHhhc--CCcchHHHHHHHHHHHHhccCchh--HHHHhh
Q 000133 537 NGSANGKEIAAKTLNHLIHKSD---T--------ATISQLTALLTS--DLPESKVYVLDALKSMLSVVSFSD--ILREGS 601 (2100)
Q Consensus 537 ~~~~~~~~~Aa~aL~~L~~~~~---~--------~~i~~L~~lL~~--~~~~~~~~a~~aL~~l~~~~~~~~--~~~~~i 601 (2100)
..++.+...+++++..++.... . ..+..++..... ....++..+..+++.+....+..- ......
T Consensus 464 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~ 543 (861)
T d2bpta1 464 QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIS 543 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3467788888888877764211 1 223334444432 334577778888887766543221 011110
Q ss_pred hccchHHHHHHHhcCC-----------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCC-CHHHHHHHHH
Q 000133 602 AANDAVETMIKILSST-----------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-SECILVEASR 669 (2100)
Q Consensus 602 ~~~~~i~~Lv~lL~s~-----------~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~aa~ 669 (2100)
....+.+...+... ...++.....++..+....++... ......++.+...+... +..++..+..
T Consensus 544 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~l~ 620 (861)
T d2bpta1 544 --TFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE-PVADMLMGLFFRLLEKKDSAFIEDDVFY 620 (861)
T ss_dssp --HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHhhhcccCCchhHHHHHHH
Confidence 01122222222211 123444555556655543222111 11123456666666443 4456778888
Q ss_pred HHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCCh--hH
Q 000133 670 CLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTI--SG 747 (2100)
Q Consensus 670 aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~~--~~ 747 (2100)
++++++...++.-.. .-...+|.|...+.+.+++++..|+.+++.++...+.......+++++.|.+.+++++. .+
T Consensus 621 ~l~~l~~~~~~~~~~--~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~ 698 (861)
T d2bpta1 621 AISALAASLGKGFEK--YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698 (861)
T ss_dssp HHHHHHHHHGGGGHH--HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHhhHHHHH--HHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHH
Confidence 888887654322111 11346788888899999999999999999987432222223346788999999987653 47
Q ss_pred HHHHHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccc----------hHhHHHHHHHHHHcCCCCCCCCcc
Q 000133 748 KTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVA----------TSEALDALAILSRSGGASGHVKPA 817 (2100)
Q Consensus 748 ~~~Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~----------~~~al~~L~~L~~~~~~~~~~~~~ 817 (2100)
+..+..+|..+....+.. +..++ ...++.+.+.+....+... ++.++.++..+.....+ ++
T Consensus 699 k~~~~~~l~~i~~~~~~~--~~~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-----~~ 769 (861)
T d2bpta1 699 KPAVLSVFGDIASNIGAD--FIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD-----KP 769 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG--GHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT-----CH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CH
Confidence 889999999988654432 22211 1223333344333322211 14455555444432222 11
Q ss_pred cceeeccCCCchhhhhhhcc----CChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcC--Ccceecch
Q 000133 818 WQVLAEFPKSITPIVSSIAD----ATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCT--NPKVKIGG 891 (2100)
Q Consensus 818 ~~~~~~~~~~l~~L~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~--~~~~r~~~ 891 (2100)
....--++..+.-+...+.+ ....+...+..++..+++.-++....-+... .....++....++. +...|..|
T Consensus 770 ~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 848 (861)
T d2bpta1 770 EALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQ-DWVIDYIKRTRSGQLFSQATKDTA 848 (861)
T ss_dssp HHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTC-HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhh-HHHHHHHHHHHhCcchhHHHHHHH
Confidence 11111123333333333333 3466777788888777654443222222221 11223344444554 34466666
Q ss_pred hhH
Q 000133 892 AAL 894 (2100)
Q Consensus 892 ~~~ 894 (2100)
.|+
T Consensus 849 ~~~ 851 (861)
T d2bpta1 849 RWA 851 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.1e-07 Score=127.24 Aligned_cols=771 Identities=10% Similarity=0.049 Sum_probs=395.4
Q ss_pred CCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhcCC--HHHHHHHHHHHHhhhccc-h-hhHHH------
Q 000133 22 SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS--LAVKIQAATVLGSLCKEN-E-LRVKV------ 91 (2100)
Q Consensus 22 ~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~~~--~~v~~~aa~~L~~L~~~~-~-~~~~i------ 91 (2100)
+.+.+.+..|-..|..+.+... .|.+..|...+.+.+ ..+|..|+-.|.+..... . .+...
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~~---------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~ 82 (876)
T d1qgra_ 12 SPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhcCh---------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccccc
Confidence 4456777888888888776422 256777888886643 578888888887755211 1 01100
Q ss_pred ----HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHH
Q 000133 92 ----LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGAL 167 (2100)
Q Consensus 92 ----~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL 167 (2100)
.....-..++..|.+++. .+..++.++..+.....+ ...+ .+.+|.|++.+.+.+.. ..++..++.+|
T Consensus 83 i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p----~~~W--peli~~L~~~l~~~~~~-~~~~~~~l~~l 154 (876)
T d1qgra_ 83 IDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIP----VNQW--PELIPQLVANVTNPNST-EHMKESTLEAI 154 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGG----GTCC--TTHHHHHHHHHHCTTCC-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCC----cccc--HHHHHHHHHHhcCCCCc-HHHHHHHHHHH
Confidence 011123456777777664 444567778777762111 0001 25688888888664333 33555677778
Q ss_pred HHhccCChhhHHHHHhcCCHHHHHHhHccC--CHHHHHHHHHHHHHHhhcCcchhh-HHhhhchHHHHHHHhcCCCCHHH
Q 000133 168 RNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAADATKQLLKLLGSGNEASV 244 (2100)
Q Consensus 168 ~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~v 244 (2100)
..++.......-.-.-...++.++..+.++ +.+++..+..++.+.......... .....-.++.+...+.. ++.++
T Consensus 155 ~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~v 233 (876)
T d1qgra_ 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PDTRV 233 (876)
T ss_dssp HHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC-SSHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC-CCHHH
Confidence 877642211111011123567778877654 467888888888776644332111 11112234455555554 45789
Q ss_pred HHHHHHHHHHhhcCChHhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCC
Q 000133 245 RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 324 (2100)
Q Consensus 245 ~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~ 324 (2100)
+..+..+|..+....++.-.........+.+...+.... ..+...+...+..++......
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~----------- 293 (876)
T d1qgra_ 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI---------DEVALQGIEFWSNVCDEEMDL----------- 293 (876)
T ss_dssp HHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS---------HHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999988644432111112222223333333322 334444444444333210000
Q ss_pred CChhhhhhhhhhhHHHHHH-hccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCccchhhhccccHH
Q 000133 325 SSPAQVADTLGALASALMI-YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR 403 (2100)
Q Consensus 325 ~~~~~~~~~~gal~~ll~~-l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~~~~~l~~~g~i~ 403 (2100)
....... .+.... ..... . ..... ....++
T Consensus 294 ------------~~~~~~~~~~~~~~--~~~~~----------------~-~~~~~------------------~~~l~~ 324 (876)
T d1qgra_ 294 ------------AIEASEAAEQGRPP--EHTSK----------------F-YAKGA------------------LQYLVP 324 (876)
T ss_dssp ------------HHHHHHHHHHSSCC--SSCCC----------------C-HHHHH------------------HHHHHH
T ss_pred ------------HHHhhHHHHhhhhH--HHHHH----------------H-HHHHH------------------HHHHHH
Confidence 0000000 000000 00000 0 00000 001122
Q ss_pred HHHHhhc-------CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCccc
Q 000133 404 LLVGLIT-------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS 476 (2100)
Q Consensus 404 ~Lv~lL~-------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~ 476 (2100)
.+...+. ..+..++..|..++..++...... +. ...++.+...+.+.+...++.++.+++.+.......
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~ 400 (876)
T d1qgra_ 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHH
Confidence 2222222 123357778888888777653321 11 023455666777889999999999999987543333
Q ss_pred HHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCc----HHHHHHHhhcCChhHHHHHHHHHHH
Q 000133 477 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA----VPALLWLLKNGSANGKEIAAKTLNH 552 (2100)
Q Consensus 477 ~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~----i~~Lv~lL~~~~~~~~~~Aa~aL~~ 552 (2100)
...-.-...++.++..+.++++.+|..+++++..++...+.. +..... ++.++..+. .++.++..+++++.+
T Consensus 401 ~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~ 476 (876)
T d1qgra_ 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSS 476 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh---hhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 333333457889999999999999999999999998643221 111222 344444443 467889999999988
Q ss_pred HhcCC-----------------C----CCcHHHHHHHhhcC---CcchHHHHHHHHHHHHhccCch--hHHHHhhhccch
Q 000133 553 LIHKS-----------------D----TATISQLTALLTSD---LPESKVYVLDALKSMLSVVSFS--DILREGSAANDA 606 (2100)
Q Consensus 553 L~~~~-----------------~----~~~i~~L~~lL~~~---~~~~~~~a~~aL~~l~~~~~~~--~~~~~~i~~~~~ 606 (2100)
++... - ...++.+...+... ....+..+.+++..+....... ..+.... ...
T Consensus 477 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~ 554 (876)
T d1qgra_ 477 LAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTT--LVI 554 (876)
T ss_dssp HHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHH--HHH
Confidence 86421 0 02344455555432 3446777788877765543321 1111111 111
Q ss_pred HHHHHHHhcCC------CH-----HHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcC--CCHHHHHHHHHHHHH
Q 000133 607 VETMIKILSST------KE-----ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAA 673 (2100)
Q Consensus 607 i~~Lv~lL~s~------~~-----~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~aa~aL~~ 673 (2100)
++.+...+... .. +++...+.++..+................++.+..++.. ++..++..+..+++.
T Consensus 555 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~ 634 (876)
T d1qgra_ 555 MERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634 (876)
T ss_dssp HHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 33333333211 11 233345555655554322211111122356666666643 344678888888888
Q ss_pred HhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC--hhHHHH
Q 000133 674 IFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT--ISGKTL 750 (2100)
Q Consensus 674 L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~--~~~~~~ 750 (2100)
++...++.-.. .-...++.+...+.+ .+++++..|...++.+............+.+++.+...+.+++ ..++..
T Consensus 635 l~~~~~~~~~~--~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~ 712 (876)
T d1qgra_ 635 LVEVLGGEFLK--YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQ 712 (876)
T ss_dssp HHHHHGGGGGG--GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHH
T ss_pred HHHHcchhhHH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHH
Confidence 86533221100 012245666666654 4578999999999888744333344455788899999997764 458899
Q ss_pred HHHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhccccc----------chHhHHHHHHHH---HHcCCCCCCCCcc
Q 000133 751 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV----------ATSEALDALAIL---SRSGGASGHVKPA 817 (2100)
Q Consensus 751 Aa~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v----------~~~~al~~L~~L---~~~~~~~~~~~~~ 817 (2100)
+.+++..+....+.. +..++ .-.++.+.+..+...+.. ..+..+.++..+ .+..... ..+
T Consensus 713 ~~~~i~~i~~~~~~~--~~~yl--~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~--~~~- 785 (876)
T d1qgra_ 713 ILSVFGDIALAIGGE--FKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN--VHP- 785 (876)
T ss_dssp HHHHHHHHHHHHGGG--GGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS--CCG-
T ss_pred HHHHHHHHHHHHhHh--hHHHH--HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc--chh-
Confidence 999999987654432 22211 111222222222111110 012222222222 2222110 001
Q ss_pred cceeeccCCCchhhhhh---hc---cCChhHHHHHHHHHHHHhcCCcccchhcccccccchHHHHHHHhhcCCcceecch
Q 000133 818 WQVLAEFPKSITPIVSS---IA---DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGG 891 (2100)
Q Consensus 818 ~~~~~~~~~~l~~L~~~---l~---~~~~~~~~~a~~~L~~L~~~~~~~~g~~~~~~~~~~~~~~~~~l~s~~~~~r~~~ 891 (2100)
........+.++... +. ..+..+...+..++..+.+.-.......+ ........++....+|+++..|..|
T Consensus 786 --~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~-~~~~~v~~ll~~~~~s~~~~~~~~a 862 (876)
T d1qgra_ 786 --DVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV-EARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp --GGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH-HTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHhCCCHHHHHHH
Confidence 001111222333322 21 23567777787777665321111111111 2223445688888999999999999
Q ss_pred hhHHHHHhhh
Q 000133 892 AALLICAAKV 901 (2100)
Q Consensus 892 ~~~~~~~~~~ 901 (2100)
.|+.-.+=|.
T Consensus 863 ~~~~~~~~~~ 872 (876)
T d1qgra_ 863 RWATKELRKL 872 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9985554443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=5.9e-08 Score=132.37 Aligned_cols=585 Identities=12% Similarity=0.082 Sum_probs=318.9
Q ss_pred HHHHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCCh------
Q 000133 188 DILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCK------ 260 (2100)
Q Consensus 188 ~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~Aa~aL~~Ls~~~~------ 260 (2100)
+.|...+.++|+++|..|-..|..+...+. .+.+..|++.+.+. .+.++|..|+-.|.|......
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence 345556678899999999999866653321 34577888888764 457899999999988764322
Q ss_pred -----------HhHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhh
Q 000133 261 -----------DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQ 329 (2100)
Q Consensus 261 -----------~~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~ 329 (2100)
+.+..+ -..++..+.+++ ..++..++.++..++..
T Consensus 80 ~~~~~~~~i~~~~~~~i-----k~~ll~~l~~~~---------~~vr~~~a~~i~~i~~~-------------------- 125 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQI-----KTNALTALVSIE---------PRIANAAAQLIAAIADI-------------------- 125 (861)
T ss_dssp HHHHHHHHSCHHHHHHH-----HHHHHHHHTCSS---------HHHHHHHHHHHHHHHHH--------------------
T ss_pred HHhhhHhcCCHHHHHHH-----HHHHHHHHcCCC---------HHHHHHHHHHHHHHHHH--------------------
Confidence 111111 123444444332 34455555555443320
Q ss_pred hhhhhhhhHHHHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCC--Cccchhhhc-cccHHHHH
Q 000133 330 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLEN-SEAKRLLV 406 (2100)
Q Consensus 330 ~~~~~gal~~ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~-~g~i~~Lv 406 (2100)
.+- . . .=..+++.|...+.+.++..++..+..++..+... +.....+.. ...+..++
T Consensus 126 -------------~~p---~--~--~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~ 185 (861)
T d2bpta1 126 -------------ELP---H--G--AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185 (861)
T ss_dssp -------------HGG---G--T--CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH
T ss_pred -------------hCC---c--C--chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 01246667777787777777788888999888422 222222211 11223333
Q ss_pred Hhhc--CCCHHHHHHHHHHHHHhhccCccchH-HHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhc
Q 000133 407 GLIT--MATNEVQEELVRALLKLCNNEGSLWR-ALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 483 (2100)
Q Consensus 407 ~lL~--~~~~~v~~~A~~aL~~L~~~~~~~~~-~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~ 483 (2100)
..+. ..+..++..+..++.++...-...-. .......++.+...+++++++++..+..+|..++...++........
T Consensus 186 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~ 265 (861)
T d2bpta1 186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ 265 (861)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 45689999999999987765332110 11112346778888999999999999999999975443322211111
Q ss_pred CChHH-HHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----------------CCcHHHHHHHhhcC-------C
Q 000133 484 GGIPP-LVQILESGSAKAKEDSASILRNLCNHSEDIRACVES----------------ADAVPALLWLLKNG-------S 539 (2100)
Q Consensus 484 g~i~~-Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~----------------~g~i~~Lv~lL~~~-------~ 539 (2100)
.+.. +.....+.++.++..+...+..++............ ...++.+...+... +
T Consensus 266 -~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~ 344 (861)
T d2bpta1 266 -ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD 344 (861)
T ss_dssp -THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCC
T ss_pred -HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence 2333 344556678999999998888887531111111111 11345555555432 2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcHHHHH----HHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhc
Q 000133 540 ANGKEIAAKTLNHLIHKSDTATISQLT----ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 615 (2100)
Q Consensus 540 ~~~~~~Aa~aL~~L~~~~~~~~i~~L~----~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 615 (2100)
+..+..+..+|..++.......++.+. ..+.+.++..+..+..+++.+........ ....+ ...++.++..+.
T Consensus 345 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~-~~~~l--~~~l~~l~~~l~ 421 (861)
T d2bpta1 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ-RTYYV--HQALPSILNLMN 421 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH-HHHHH--HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh-HHHHH--HHHHHHHHHHhc
Confidence 346777777787776644444444444 34566777888888888887665433221 11111 234788899999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh---cCCCHHHHHHHHHHHHHHhcCCchh--HHHHHHhCC
Q 000133 616 STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL---DVGSECILVEASRCLAAIFLSVREN--REVAAVARD 690 (2100)
Q Consensus 616 s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~v~~~aa~aL~~L~~~~~~~--~~~~~~~~~ 690 (2100)
++++.+|..+++++..++....+. ......++.++..+ ...++.++..++.++..++....+. .........
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 498 (861)
T d2bpta1 422 DQSLQVKETTAWCIGRIADSVAES---IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPA 498 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGG---SCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHH
T ss_pred CcchhhhhHHHHHHHHHHHHhchh---hhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhh
Confidence 999999999999999988542211 11122333333332 2445677888888887775421110 000000112
Q ss_pred ChHHHHHHhC--CCCHHHHHHHHHHHHHHhcC-cHHHHHH---HHcCcHHHHHHHHccCCh-----------hHHHHHHH
Q 000133 691 ALSPLVVLAG--SPVLEVAEQATCALANLILD-SEVSEKA---IAEEIILPATRVLCEGTI-----------SGKTLAAA 753 (2100)
Q Consensus 691 ~l~~Lv~ll~--~~~~evr~~aa~aL~~L~~~-~~~~~~~---v~~~~v~~L~~ll~~~~~-----------~~~~~Aa~ 753 (2100)
.+..|+.... ..+..++..+..++..++.. ++..... +.....+.|...+..... ..+.....
T Consensus 499 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (861)
T d2bpta1 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 3445555543 34556888889999988732 2222211 223333334433332221 12334444
Q ss_pred HHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCCCCCCCCcccceeeccCCCchhhhh
Q 000133 754 AIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 833 (2100)
Q Consensus 754 aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 833 (2100)
.+..+....+.. +.. .....+..+...+...+.....+.++.++..++..... ++ .-..+..++.|..
T Consensus 579 ~l~~~~~~~~~~--~~~--~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~-~~-------~~~l~~i~p~l~~ 646 (861)
T d2bpta1 579 VLAAVIRKSPSS--VEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GF-------EKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHCGGG--TGG--GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG-GG-------HHHHHHHHHHHHH
T ss_pred HHHHHHhcchhh--HHH--HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhH-HH-------HHHHHHHhhHHHH
Confidence 455544433221 111 11223444555555544333337777777776543221 00 0112334555556
Q ss_pred hhccCChhHHHHHHHHHHHH
Q 000133 834 SIADATPLLQDKAIEILSRL 853 (2100)
Q Consensus 834 ~l~~~~~~~~~~a~~~L~~L 853 (2100)
++.+.++.++..|..+++.+
T Consensus 647 ~l~~~~~~v~~~a~~~l~~i 666 (861)
T d2bpta1 647 ALNQVDSPVSITAVGFIADI 666 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHH
Confidence 66666666666665555544
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.1e-11 Score=120.24 Aligned_cols=113 Identities=25% Similarity=0.429 Sum_probs=90.0
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc-
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS- 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 2055 (2100)
|+|.|+|.+..++... .|.+.-|+.+++|+ ..++|+|+.++.||+|+|.|.|.+.. .++.|.|+|+|+++||++
T Consensus 6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~~~d~ 82 (126)
T d2ep6a1 6 GILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDEDGDKPPD 82 (126)
T ss_dssp EEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-EEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-eEEEEEeeCCceeEEEEEEEEEEEec--cCceeEEEEEEccCCcCcc
Confidence 8999999999999764 56677899999976 57899999999999999999988763 358999999999999985
Q ss_pred ccceEEEEEeeEEeecccccceeecCCCCC----CCCcceEEEEEe
Q 000133 2056 SFGKVTIQIDRVVMLGAVAGEYTLLPESKS----GPSRNLEIEFLW 2097 (2100)
Q Consensus 2056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 2097 (2100)
.+|++.|++.++-. | ....|.|.....+ |..+ |++++.|
T Consensus 83 ~lG~~~i~l~~l~~-~-~~~~~~l~~~~~~~~~~G~i~-l~~~~i~ 125 (126)
T d2ep6a1 83 FLGKVAIPLLSIRD-G-QPNCYVLKNKDLEQAFKGVIY-LEMDLIY 125 (126)
T ss_dssp ECCBCEEEGGGCCS-S-CCEECCCBCSCTTSCCSSEEE-EEEEEEE
T ss_pred eEEEEEEEHHHCCC-C-CceEEEccccCCCCceeEEEE-EEEEEEE
Confidence 56999999999743 2 3467888654333 3323 6677766
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.3e-10 Score=118.47 Aligned_cols=113 Identities=17% Similarity=0.348 Sum_probs=93.9
Q ss_pred Cceeeeeccchhhh-----hhCCCcceEEEecCCC--CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1980 TLVVIIKRGNNMKQ-----SVGNPSVYCKLTLGNT--PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
-|+|+|.|..|+.. -.|.+.-|+.+.+|.. ..++|++++++.||+|+|.|.|.++ ++.++.|.|+|++++.+
T Consensus 4 ~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~-~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEEC-TTSCCEEEEEEEECCSS
T ss_pred EEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeeccc-CcccCcEEEEEEECCCC
Confidence 58999999999963 3566788999999742 4568999999999999999999987 77888999999999999
Q ss_pred CCcccceEEEEEeeEEeecccccceeecCCCCCCCCcceEEEEEe
Q 000133 2053 GKSSFGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
+.+.+|++.|++.++...+.....|.|++.+ .|. +++.+.|
T Consensus 83 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-~g~---i~~~l~~ 123 (126)
T d1rlwa_ 83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVT-EMV---LEMSLEV 123 (126)
T ss_dssp CCEEEEEEEEEGGGSCTTCEEEEEEEETTTE-EEE---EEEEEEC
T ss_pred CCCeEEEEEEEHHHccCCCeEEEEEEccCCC-eEE---EEEEEEE
Confidence 9889999999999998888888899995543 233 4455554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.7e-08 Score=117.66 Aligned_cols=253 Identities=14% Similarity=0.094 Sum_probs=192.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHH
Q 000133 401 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 480 (2100)
Q Consensus 401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i 480 (2100)
..+.|+.+|+++++.+|..|+.+|..+... .+++.|+.+++++++.++..|+.+|..+... ......
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~- 86 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN- 86 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccc-
Confidence 456788999999999999999999876432 5689999999999999999999999999742 222111
Q ss_pred HhcCChHHHHH-hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000133 481 TAAGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 559 (2100)
Q Consensus 481 ~~~g~i~~Lv~-lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~ 559 (2100)
.++.|.. +++++++.++..++.+|++++...+.... ..++.+...+.+.++.++..++.+++.+ .++
T Consensus 87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~---~~~ 154 (276)
T d1oyza_ 87 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI---NDK 154 (276)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhc---chH
Confidence 1333443 46788999999999999999875433222 2567888888888899998888887655 456
Q ss_pred CcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000133 560 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 639 (2100)
Q Consensus 560 ~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~ 639 (2100)
..++.+..++.+..+.++..+..+++.... .....++.++..+.+.+..++..+..++..+...
T Consensus 155 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~---- 218 (276)
T d1oyza_ 155 ATIPLLINLLKDPNGDVRNWAAFAININKY------------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK---- 218 (276)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG----
T ss_pred HHHHHHHHhcccccchhhhhHHHHHHhhhc------------cccccchhhhhhhhhhhhhhhhhhccccchhhhh----
Confidence 788999999998888888877776663321 1223467788889999999999999999877532
Q ss_pred HHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCC-CCHHHHHHHHHHHH
Q 000133 640 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALA 715 (2100)
Q Consensus 640 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~-~~~evr~~aa~aL~ 715 (2100)
.++|.|+..+.+++ ++..++.+|+.+. +..+++.|..++.+ .+.++|..|..+|.
T Consensus 219 -------~~~~~L~~~l~d~~--vr~~a~~aL~~ig------------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 219 -------RVLSVLCDELKKNT--VYDDIIEAAGELG------------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -------GGHHHHHHHHTSSS--CCHHHHHHHHHHC------------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -------hhHHHHHHHhCChH--HHHHHHHHHHHcC------------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 46889999988654 7889999998873 13589999998876 47789999888774
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.7e-08 Score=117.60 Aligned_cols=251 Identities=14% Similarity=0.037 Sum_probs=195.2
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000133 442 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 521 (2100)
Q Consensus 442 g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~ 521 (2100)
...+.|+++|+++++.++..|+.+|..+.. + .+++.|+++++++++.+|..|+.+|..+... ......
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~ 86 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN 86 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccc
Confidence 457788999999999999999999998863 2 2689999999999999999999999998753 222221
Q ss_pred HHhCCcHHHHH-HHhhcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHhhcCCcchHHHHHHHHHHHHhccCchhHH
Q 000133 522 VESADAVPALL-WLLKNGSANGKEIAAKTLNHLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 597 (2100)
Q Consensus 522 i~~~g~i~~Lv-~lL~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 597 (2100)
.++.|. .++++.++.++..+..+|++++.... +..++.+...+.+.++.++..+..+++.
T Consensus 87 -----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~----------- 150 (276)
T d1oyza_ 87 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV----------- 150 (276)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT-----------
T ss_pred -----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhh-----------
Confidence 233444 34567899999999999999987542 2456677777888888888888877763
Q ss_pred HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000133 598 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 677 (2100)
Q Consensus 598 ~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~ 677 (2100)
+.+...++.+..++.+.+..++..+..++..+..... ..++.+...+.+.+..++..+..+++.+.
T Consensus 151 ---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~~-- 216 (276)
T d1oyza_ 151 ---INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK-- 216 (276)
T ss_dssp ---C---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT--
T ss_pred ---cchHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccchhh--
Confidence 2234458889999999999999999999988877643 24566788888999999999999988762
Q ss_pred CchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCcHHHHHHHHcCcHHHHHHHHccCC-hhHHHHHHHHHH
Q 000133 678 VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT-ISGKTLAAAAIA 756 (2100)
Q Consensus 678 ~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~~~~~~~~v~~~~v~~L~~ll~~~~-~~~~~~Aa~aL~ 756 (2100)
...+++.|++.+.++ ++|..++++|+.+. +...++.|..++..++ ..++..|..+|.
T Consensus 217 ----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 217 ----------DKRVLSVLCDELKKN--TVYDDIIEAAGELG----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp ----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred ----------hhhhHHHHHHHhCCh--HHHHHHHHHHHHcC----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 135789999998864 48999999999874 2468899999888764 558999888774
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.1e-06 Score=115.15 Aligned_cols=721 Identities=12% Similarity=0.080 Sum_probs=367.8
Q ss_pred cCcHHHHHHHHhcCC--HHHHHHHHHHHHHhhcch--hhhh-------hhh---hcCChHHHHHhhccCChhhHHHHHHH
Q 000133 1230 FAAVSQLVAVLRLGG--RGARYSAAKALESLFSAD--HIRN-------AES---ARQAVQPLVEILNTGLEREQHAAIAA 1295 (2100)
Q Consensus 1230 ~~al~~Li~~L~~~~--~~~r~~Aa~aL~~L~~~~--~~~~-------~i~---~~~~i~~Lv~lL~~~~~~~~~~A~~a 1295 (2100)
++.+..|..++.+.+ ...|..|+-.|.+..... .... .+. .......|+..|.+++. .++.++.+
T Consensus 34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~ 112 (876)
T d1qgra_ 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQC 112 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHH
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHH
Confidence 467888999887664 568999998888765321 1111 111 12223667777776553 44556777
Q ss_pred HHHhhcCCch-hhHHHHhhhcchhHHHHHHHhhc-CChhhHHHHHHHHHHHhcCcchH-HHHHhhcChHHHHHHHhcC--
Q 000133 1296 LVRLLSENPS-RALAVADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTRIR-STVAAARCVEPLVSLLVTE-- 1370 (2100)
Q Consensus 1296 L~~La~~~~~-~~~~~~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~L~~L~~~~~~r-~~~~~~~~i~~Lv~lL~~~-- 1370 (2100)
+..++...-. ... .+.++.|...+.+. ....++..+..++..++.+-... ........++.++..+.+.
T Consensus 113 i~~i~~~~~p~~~W------peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~ 186 (876)
T d1qgra_ 113 VAGIACAEIPVNQW------PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp HHHHHHHHGGGTCC------TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHCCcccc------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCc
Confidence 7777742110 000 25688888888654 33567778888888876542211 1112234567777777654
Q ss_pred CchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHH
Q 000133 1371 FSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLD 1448 (2100)
Q Consensus 1371 ~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~ 1448 (2100)
+.+++..|+.++.++.. ...........-+++.+...+++++.++|..++.+|..+.+..++.-...........+..
T Consensus 187 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T d1qgra_ 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45788889999888763 1111111111224677888888999999999999999998765443322233334455566
Q ss_pred HhccCChhHHHHHHHHHHHHHhccC----------------Ccccc-----cccCchHHHHHHhccCC-----CCchhHh
Q 000133 1449 ILHEAPDFLCSAFAELLRILTNNAG----------------IAKGP-----SAAKVVEPLFLLLTRSE-----FGPDGQH 1502 (2100)
Q Consensus 1449 ~L~~~~~~~~~~aa~lL~~Ls~~~~----------------~~~~~-----~~~~~v~~Ll~ll~~~~-----~~~~~~~ 1502 (2100)
.+.++.++....+.+.+..++.... ..... .....++.+...+...+ +....+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 346 (876)
T d1qgra_ 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHH
Confidence 6666666666655555544432110 00000 01123334444443322 2233556
Q ss_pred HHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHHHHHHhhcccccc-ccccccCchHHHHHHhccCC
Q 000133 1503 SALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ-KDPVTQQVIGPLIRVLGSGI 1581 (2100)
Q Consensus 1503 ~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~aL~~l~~~~~~~-~~l~~~g~i~~Lv~lL~s~~ 1581 (2100)
.|..++..+....... .....++.+...+.+++...|..+...++.+....... ..-.-...++.+...+.+.+
T Consensus 347 ~a~~~l~~l~~~~~~~-----~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ 421 (876)
T d1qgra_ 347 AAGVCLMLLATCCEDD-----IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 421 (876)
T ss_dssp HHHHHHHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhhhh-----hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc
Confidence 6777776654221110 01122344556677899999999999999886532211 11111256788889999999
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhhcccchh--------------h-
Q 000133 1582 HILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEF--------------Y- 1646 (2100)
Q Consensus 1582 ~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~~~~~~~--------------~- 1646 (2100)
+.+|..|+.++.+++...++.......+++++..+...-.+. ..+...+++.+.++....... .
T Consensus 422 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 500 (876)
T d1qgra_ 422 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS 500 (876)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST
T ss_pred cHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999765553333444555555554421111 234555777777665432110 0
Q ss_pred --hcccHHHHHHHhhcC---CHHHHHHHHHHHHHhccCChhhH-HHHHH--cccHHHHHHHHhcc------CcHHHHH--
Q 000133 1647 --LEVPVAVLVRLLRSG---SEGTVIGSLNALLVLESDDGTSA-EAMAE--SGAIEALLELLRSH------QCEETAA-- 1710 (2100)
Q Consensus 1647 --~~~~v~~Lv~ll~~~---~~~~~~~a~~aL~~L~~~~~~~~-~~i~~--~g~i~~Li~lL~s~------~~~~~a~-- 1710 (2100)
....++.+...+... ...++..++.++..+........ ..+.+ ...++.+...+... ..+....
T Consensus 501 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 580 (876)
T d1qgra_ 501 SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL 580 (876)
T ss_dssp TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH
Confidence 112345555665433 35678888888877654433221 11111 11222333333211 0111111
Q ss_pred -----HHHHHHhcC--chhhhhhhchhhhhhhhhhccC--hhhHHHHHHHHHHHHhcchhhhhhHHHhhhhhchHHHHHH
Q 000133 1711 -----RLLEVLLNN--GKIRESKATKSAILPLSQYLLD--PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVN 1781 (2100)
Q Consensus 1711 -----~lL~~L~~~--~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~~~~A~~~l~~~~~~~~l~~~~~~~~a~~~Lv~ 1781 (2100)
..+..+... ...... .....+..+.+++.. +....+.....+.+.+....... +..- ....++.|.+
T Consensus 581 ~~~l~~~l~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~-~~~~--l~~ii~~l~~ 656 (876)
T d1qgra_ 581 QSLLCATLQNVLRKVQHQDALQ-ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE-FLKY--MEAFKPFLGI 656 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHT-THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG-GGGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhhhhh-hHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchh-hHHH--HHHHHHHHHH
Confidence 222222211 011111 111233334444332 12222222223333333222111 1110 0123667888
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhcCCcccHHHHHhhCCHHHHHHHhCCCC--ccchHHHHHHHHHHhcccc--hhhhcchh
Q 000133 1782 VLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSD--PETSVQAAMFVKLLFSNHT--IQEYASSE 1857 (2100)
Q Consensus 1782 lL~~~~~~~~~~~A~~aL~~l~~~~~~~~~~~~~~g~i~~L~~lL~s~~--~~~~~~aa~~l~~L~s~~~--~~~~~~~~ 1857 (2100)
.|++..+.+++..|+..+..+....... ..-.-..+++.|.+.+++++ ...|..+..+++.+....+ ...++.
T Consensus 657 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~-- 733 (876)
T d1qgra_ 657 GLKNYAEYQVCLAAVGLVGDLCRALQSN-IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE-- 733 (876)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH--
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHhHHh-hhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHH--
Confidence 8877756789999998888777332222 11122346778888887654 3456666666666542222 112221
Q ss_pred hHHHHHHHHhhccccCCCCc-----------HHHHHHHhhhhccCCCccccCCCcc-----ChHHHHHhh------ccCC
Q 000133 1858 TVRAITAAIEKELWATGTVN-----------EEYLKALNALFNNFPRLRATEPATL-----SIPHLVTAL------KTGS 1915 (2100)
Q Consensus 1858 ~~~~~~~l~~~~~~~~~~~~-----------~~~c~~l~~~~~~~h~g~cs~~~tf-----ci~~Lv~~L------~~~~ 1915 (2100)
.-++.+....-...-+.. ...+...+.+...++...-....++ ++.++++.+ ++.+
T Consensus 734 --~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 811 (876)
T d1qgra_ 734 --VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHT 811 (876)
T ss_dssp --HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCC
T ss_pred --HHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 011111111000111111 1122222333322222111111111 245544433 3456
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHhcCcHHHHH-HHHhCCchhHHHHHHHHhhc
Q 000133 1916 EATQEAALDALFLLRQAWSACPAEVSKAQSVAAADAIPLLQY-LIQSGPPRFQEKAEFLLQCL 1977 (2100)
Q Consensus 1916 ~~~~eaal~aL~tL~~~~~~~~~~~~~~~~l~~a~~i~~i~~-~~~~~~~~~~~~a~~~le~i 1977 (2100)
+.+...|+..|..|....... + .+.+..-.-|..+++ ...+..+..|+.|-|+.+-+
T Consensus 812 ~~~~~~~~~~i~~l~~~~g~~---~--~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~ 869 (876)
T d1qgra_ 812 DGVVACAAGLIGDLCTAFGKD---V--LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHCTH---H--HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---H--HHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 788888887777776644332 0 122222223333333 34447888899999999988
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.91 E-value=1.9e-10 Score=118.81 Aligned_cols=114 Identities=19% Similarity=0.443 Sum_probs=88.8
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecCCCCCccccccc-cCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLGNTPPRQTKIVS-TGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
|+|.|+|.+.++++.. +|...-||.+++|+. +++|+++. ++.||.|+|.|.|.+. +..++|+|+|+|+++|+++
T Consensus 10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~-~~~t~~~~~~~~nP~Wne~f~f~v~--~~~~~L~v~V~d~d~~~~d 86 (136)
T d1wfja_ 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVS--EGTTELKAKIFDKDVGTED 86 (136)
T ss_dssp EEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEE--SSCCEEEEEECCSSSCTTT
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCccEEEEEeee-eEEEEEEecCCCcEEEeeEEEEEEc--CccceEEEEEEEecCCCCC
Confidence 8999999999999864 566778999999764 56677775 6889999999988776 3456899999999999986
Q ss_pred -ccceEEEEEeeEEeecccc-cceeecCCCCCCCCc-ceEEEEEec
Q 000133 2056 -SFGKVTIQIDRVVMLGAVA-GEYTLLPESKSGPSR-NLEIEFLWS 2098 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 2098 (2100)
.+|+++|+|.++...|.+. ..|.|..+ ++.+ .+.|.+.|-
T Consensus 87 ~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~~~~G~i~l~l~~~ 129 (136)
T d1wfja_ 87 DAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFK 129 (136)
T ss_dssp CCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEE
T ss_pred CEEEEEEEEhHHhcccCCcCcEEEEecCC---CccCEEEEEEEEEE
Confidence 5699999999987776664 35666433 3333 455777764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=98.90 E-value=1.5e-10 Score=119.10 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=93.6
Q ss_pred CCCceeeeeccchhhhh-------------hCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEE
Q 000133 1978 PGTLVVIIKRGNNMKQS-------------VGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHI 2044 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2044 (2100)
.|.|.|+|++..+++-. -|...-||.+++|+...++|++++++.+|+|+|.|.|... .+++|.|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~---~~~~l~i 81 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVC---NGRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEE---EECEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEe---cCCceEE
Confidence 58999999999998742 2224479999999888889999999999999999998774 3589999
Q ss_pred EeecCCccCCcc-cceEEEEEeeEEeecc--cccceeecCCCCCCCCcceEEEEEecC
Q 000133 2045 SCKNKSKMGKSS-FGKVTIQIDRVVMLGA--VAGEYTLLPESKSGPSRNLEIEFLWSN 2099 (2100)
Q Consensus 2045 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2099 (2100)
+|++++.||++. +|+++|+++++...+. ...-|.|.| .|+.+ +.|+|.||+
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p---~G~v~-l~v~~~~~~ 135 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP---EGKVY-VIIDLSGSS 135 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS---SCEEE-EEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC---CcEEE-EEEEEEeCC
Confidence 999999999866 5999999999887654 334577865 45554 778888874
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=2.3e-10 Score=117.39 Aligned_cols=110 Identities=24% Similarity=0.451 Sum_probs=88.5
Q ss_pred CCceeeeeccchhh--hhhCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCcc
Q 000133 1979 GTLVVIIKRGNNMK--QSVGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKM 2052 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2052 (2100)
|.|+|+|.+..++. ...|.+.-|+.+.+. ....++|+|++++.||.|+|.|.|.+..+..++.|+|.|++++.|
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 94 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence 67999999999994 455567788888873 233568999999999999999999988777788999999999999
Q ss_pred CCcc-cceEEEEEeeEEeecccccceeecCCCCCCCCcc
Q 000133 2053 GKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGPSRN 2090 (2100)
Q Consensus 2053 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2090 (2100)
|++. +|+|+|++..+- .+.+.+-|.|.+.. +|...|
T Consensus 95 ~~d~~iG~~~i~l~~l~-~~~~~~W~~L~~~~-~ge~~n 131 (132)
T d1a25a_ 95 SRNDFMGSLSFGISELQ-KAGVDGWFKLLSQE-EGEYFN 131 (132)
T ss_dssp SCCEEEEEEEEEHHHHT-TCCEEEEEECBCHH-HHTTCC
T ss_pred CCCcEeEEEEEeHHHcC-CCCCCeEEECCCCC-CCcccC
Confidence 9875 599999999864 55678889996543 555444
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.9e-09 Score=107.82 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=88.5
Q ss_pred CCCceeeeeccchhh--hhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCc
Q 000133 1978 PGTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKS 2055 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2055 (2100)
++-|.|||...+..+ ..+|.+.-|+.+++|+ ..++|+|++++.||+|+|.|+|... | ++.|+|+|+|+++||++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~~~--~-~~~l~~~V~d~d~~~~d 80 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-QSKKTEKCNNTNSPKWKQPLTVIVT--P-VSKLHFRVWSHQTLKSD 80 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-EEEECCCCSSCSSCEEEEEEEEEEC--T-TCEEEEEEEECCSSSCC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-eEEeeEEEEecccEEEcceEEEEEE--e-cceeEEEEEEccCCCCC
Confidence 577899999998774 5666789999999975 5789999999999999999988764 3 68999999999999985
Q ss_pred -ccceEEEEEeeEEee--cc-cccceeecCC-CCCCCCcceEEEEEec
Q 000133 2056 -SFGKVTIQIDRVVML--GA-VAGEYTLLPE-SKSGPSRNLEIEFLWS 2098 (2100)
Q Consensus 2056 -~~~~~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2098 (2100)
.+|++.|.+.+++.. |. ....++|... .++|..-.-+|.+.++
T Consensus 81 ~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 81 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 459999999988753 22 2334444322 3355555567777665
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=3.4e-09 Score=110.14 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=86.3
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCCC-------------CccccccccCCCccccccceecccc--CCCCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTP-------------PRQTKIVSTGPNPEWEESFAWSFEI--PPKGQ 2040 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 2040 (2100)
.|.|.|+|+|..++.. ..|.+.-|+++.+.++. .++|||++++.||.|+|.|.|..-. .+...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 4889999999999954 45556688888874332 2579999999999999999986321 23566
Q ss_pred eEEEEeecCCccCCcc-cceEEEEEeeEEeecccccceeecCCCC
Q 000133 2041 KLHISCKNKSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESK 2084 (2100)
Q Consensus 2041 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2084 (2100)
.|+|.|+|++.||++. +|+|.|.++.+...+.+.+-|.|.+.++
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~~ 141 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE 141 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcCC
Confidence 8999999999999865 6999999999988888889999987754
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=4.7e-09 Score=105.58 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=80.0
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCCCCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccc
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFG 2058 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2058 (2100)
++|.|+|.+..+++-. +...-|+.+++|+. .++|++++ +.||+|+|.|.|..+.| ++.|.|+|+|++.++.+.+|
T Consensus 2 ~~L~V~v~~a~~l~~~-~~~dpYv~l~~~~~-k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~~~d~~lG 76 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ-EKFNTYVTLKVQNV-KSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMVG 76 (128)
T ss_dssp EEEEEEEEEEECSSCG-GGCEEEEEEEETTE-EEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEEE
T ss_pred eEEEEEEEEEECCCCC-CCcCeEEEEEeCCE-EEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCCcCCcceE
Confidence 4699999999988774 34668999999864 56677775 56999999999998744 68999999999999988899
Q ss_pred eEEEEEeeEEeecc--cccceeecCC
Q 000133 2059 KVTIQIDRVVMLGA--VAGEYTLLPE 2082 (2100)
Q Consensus 2059 ~~~~~~~~~~~~~~--~~~~~~~~~~ 2082 (2100)
++.|++.++...+. ...-|.|.+.
T Consensus 77 ~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 77 TVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred EEEEEehhhccCCCCCCCeeEECCcc
Confidence 99999999987543 3345888554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=7.7e-07 Score=111.08 Aligned_cols=402 Identities=12% Similarity=0.045 Sum_probs=233.1
Q ss_pred HHHhcCCcchHHHHHHHHHHHhhcCHHHHhhhcccCcHHHHHHHHhcCC--HHHHHHHHHHHHHhhcch--hhhhh----
Q 000133 1196 KYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGG--RGARYSAAKALESLFSAD--HIRNA---- 1267 (2100)
Q Consensus 1196 ~~L~s~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~al~~Li~~L~~~~--~~~r~~Aa~aL~~L~~~~--~~~~~---- 1267 (2100)
+-+.+++.+.+..+...+-....+| .++.+..|..++.+++ ...|..|+..|.+..... .....
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~ 78 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 78 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhh
Confidence 3334455555555544443322211 1466788888887653 578888888787665421 11111
Q ss_pred ---hh---hcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCchhhHHHHhhhcchhHHHHHHHhhc-CChhhHHHHHHH
Q 000133 1268 ---ES---ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-CSMELKGDAAEL 1340 (2100)
Q Consensus 1268 ---i~---~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~~~~~~~~~v~~gal~~L~~lL~~~-~~~~~~~~a~~~ 1340 (2100)
+. .....+.++..+.+.+.. ++.++.++..++....... .-...++.+...+.+. .+...+..+..+
T Consensus 79 ~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~l~~ 152 (458)
T d1ibrb_ 79 WLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPVN-----QWPELIPQLVANVTNPNSTEHMKESTLEA 152 (458)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGGT-----CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCcc-----cCcchhHHHHHHHHhhcchHHHHHHHHHH
Confidence 11 123345567777665543 3334455555543211111 0135788888888654 345567777788
Q ss_pred HHHHhcCcchH-HHHHhhcChHHHHHHHhcC--CchHHHHHHHHHHHhcc--cHHHHHHHHhcCCHHHHHHhhcCCChhH
Q 000133 1341 CGVLFGNTRIR-STVAAARCVEPLVSLLVTE--FSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYML 1415 (2100)
Q Consensus 1341 L~~L~~~~~~r-~~~~~~~~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v 1415 (2100)
+..++...... ........++.++..+.+. +..++..|+.++..+.. ..............+.+..++.++++++
T Consensus 153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (458)
T d1ibrb_ 153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 232 (458)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHH
Confidence 87776542211 1122234567777777754 45789999999998884 1111112222335677888889999999
Q ss_pred HHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccC------------Cccccc----
Q 000133 1416 HEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAG------------IAKGPS---- 1479 (2100)
Q Consensus 1416 r~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~------------~~~~~~---- 1479 (2100)
+..++.+|..+++..+..-...........+...+.+..++++..+.+++..++.... ......
T Consensus 233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
T d1ibrb_ 233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312 (458)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHH
Confidence 9999999999987653322111222233445566677777777777777766653210 000000
Q ss_pred -----ccCchHHHHHHhccCC-----CCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhccCCCCHHHHHHHHH
Q 000133 1480 -----AAKVVEPLFLLLTRSE-----FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAE 1549 (2100)
Q Consensus 1480 -----~~~~v~~Ll~ll~~~~-----~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L~~~~~~vq~~a~~ 1549 (2100)
.....+.+...+...+ +....+..|..++..+....... .-...++.+...+.+++..+|..++.
T Consensus 313 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~l~~~i~~~l~s~~~~~r~aal~ 387 (458)
T d1ibrb_ 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IVPHVLPFIKEHIKNPDWRYRDAAVM 387 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-----HHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-----hhhHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1112233333333221 22345666777777764322211 01224556667788999999999999
Q ss_pred HHHHhhccc--cccccccccCchHHHHHHhccCCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhc
Q 000133 1550 LLSHLLLEE--QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIIL 1617 (2100)
Q Consensus 1550 aL~~l~~~~--~~~~~l~~~g~i~~Lv~lL~s~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~ 1617 (2100)
+|+.++... +..... -...++.|+.++++.++.+|.+|+.+|++++..-++.....-.++++++.|.
T Consensus 388 ~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 388 AFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456 (458)
T ss_dssp HHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence 999997532 211111 2367899999999999999999999999998654432222334677776654
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.2e-08 Score=104.97 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred CCceeeeeccchhhhhhCCCcceEEEecCCC---CCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCccCC
Q 000133 1979 GTLVVIIKRGNNMKQSVGNPSVYCKLTLGNT---PPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKMGK 2054 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2054 (2100)
+-|.|+|.+..++. .-|.+.-|+++.+.+. ..++|+|++++.+|+|||.|.|.+.... .+..|+|.|++++.||+
T Consensus 26 ~~L~V~v~~a~~L~-~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~ 104 (138)
T d1wfma_ 26 AELFVTRLEAVTSN-HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSR 104 (138)
T ss_dssp TEEEEEEEEEECCC-CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCT
T ss_pred CEEEEEEEEcCCCC-CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeeccccc
Confidence 56899999999994 3466778888888533 2478999999999999999999875432 35689999999999998
Q ss_pred ccc-ceEEEEEeeEEeecccccceeecCC
Q 000133 2055 SSF-GKVTIQIDRVVMLGAVAGEYTLLPE 2082 (2100)
Q Consensus 2055 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2082 (2100)
+.+ |++.|++.++-.......-|.|.+.
T Consensus 105 ~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 105 HSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp TSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred ceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 775 9999999998766667778888665
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=1.2e-08 Score=104.03 Aligned_cols=116 Identities=21% Similarity=0.342 Sum_probs=84.7
Q ss_pred CCCceeeeeccchhhh----hhCCCcceEEEecC----CCCCccccccccCC-CccccccceeccccCCCCCeEEEEeec
Q 000133 1978 PGTLVVIIKRGNNMKQ----SVGNPSVYCKLTLG----NTPPRQTKIVSTGP-NPEWEESFAWSFEIPPKGQKLHISCKN 2048 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2048 (2100)
|.-|+|+|.+..++.. .-|...-|+.+++. +...++|++|+++. ||+|+|.|+|... .|..+.|+++|+|
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~-~~~~~~L~~~V~D 81 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVT-VPDLALVRFMVED 81 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEES-CGGGCEEEEEEEE
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEE-cchhceEEEEEEE
Confidence 5568999999999942 23335577777762 45678899998875 9999999999877 6777899999999
Q ss_pred CCccCCcc-cceEEEEEeeEEeecccccceeecCCCCCCC---CcceEEEEEecC
Q 000133 2049 KSKMGKSS-FGKVTIQIDRVVMLGAVAGEYTLLPESKSGP---SRNLEIEFLWSN 2099 (2100)
Q Consensus 2049 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2099 (2100)
++.||++. +|.++|++..+. .| |. .|.|... +|. .-+|-++|.|.+
T Consensus 82 ~d~~~~d~~iG~~~i~l~~l~-~g-~~-~~~L~~~--~g~~~~~~~L~v~i~~~d 131 (131)
T d1qasa2 82 YDSSSKNDFIGQSTIPWNSLK-QG-YR-HVHLLSK--NGDQHPSATLFVKISIQD 131 (131)
T ss_dssp CCTTTCCEEEEEEEEEGGGBC-CE-EE-EEEEECT--TSCEEEEEEEEEEEEEEC
T ss_pred ecCCCCCcEEEEEEEEEeccC-CC-CE-EEECCCC--CcCCCCCCEEEEEEEEEC
Confidence 99999875 699999998764 33 22 4666322 333 225667877753
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3.2e-06 Score=105.23 Aligned_cols=438 Identities=12% Similarity=0.057 Sum_probs=233.6
Q ss_pred HHHhHccCCHHHHHHHHHHHHHHhhcCcchhhHHhhhchHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCChHh-HHHHH
Q 000133 190 LVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCKDA-RREIA 267 (2100)
Q Consensus 190 Lv~lL~s~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~Aa~aL~~Ls~~~~~~-~~~i~ 267 (2100)
+++-+.++|.+++..|...|..+...+. .+.+..|..++.+. .+.++|..|+-.|.|.-...... +....
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~ 76 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 76 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence 3344457899999999999976654321 24477788888654 45789999998998776533221 11111
Q ss_pred h-CCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHHHHHHhcc
Q 000133 268 G-SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 346 (2100)
Q Consensus 268 ~-~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~l~~ 346 (2100)
+ .+.++ +..+......+.+..... ++. .... .+++.......-.
T Consensus 77 ~~~~~l~-------------------~~~~~~i~~~ll~~~~~~------------~~~-~~~~---~~~~~~i~~~~~~ 121 (458)
T d1ibrb_ 77 QRWLAID-------------------ANARREVKNYVLQTLGTE------------TYR-PSSA---SQCVAGIACAEIP 121 (458)
T ss_dssp HHHHTSC-------------------HHHHHHHHHHHHHHTTCC------------CSS-SCSH---HHHHHHHHHHHGG
T ss_pred hhhccCC-------------------HHHHHHHHHHHHhccCCC------------cHH-HHHH---HHHHHHHHHHhCC
Confidence 1 00110 111111112222111110 000 0001 1112211111000
Q ss_pred ccCCCCCCCchhhHHHHHhhcCC-CCChHHHHHHHHHHHHHhCC--CccchhhhccccHHHHHHhhcC--CCHHHHHHHH
Q 000133 347 KAESTKPSDPLIVEQTLVNQFKP-RLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGLITM--ATNEVQEELV 421 (2100)
Q Consensus 347 ~~~~~~~~~~~~i~~~Lv~lL~~-~~~~~vq~~aa~aL~~L~~~--~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~ 421 (2100)
. . .-..+.+.+...+.+ ..+...++.+..++..+... +..... .....++.++..+.+ .+..++..++
T Consensus 122 ~-----~-~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~il~~~~~~l~~~~~~~~v~~~a~ 194 (458)
T d1ibrb_ 122 V-----N-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAAT 194 (458)
T ss_dssp G-----T-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred c-----c-cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhh-hHHHHHHHHHHHhcccccCHHHHHHHH
Confidence 0 0 112455666665553 34455677778888777322 211111 112235666777764 4678999999
Q ss_pred HHHHHhhccCccch-HHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHH
Q 000133 422 RALLKLCNNEGSLW-RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 500 (2100)
Q Consensus 422 ~aL~~L~~~~~~~~-~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 500 (2100)
.++.++........ .........+.+..++.+++++++..++.+|..+....+..-......-..+.+...+.+.++++
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 274 (458)
T d1ibrb_ 195 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 274 (458)
T ss_dssp HHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 99999876533211 11111234577788889999999999999999987544432111111112233455667788999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHH----HHHHHHHhcCCCCCcHHHHHHHhhcCCcch
Q 000133 501 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIA----AKTLNHLIHKSDTATISQLTALLTSDLPES 576 (2100)
Q Consensus 501 re~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~A----a~aL~~L~~~~~~~~i~~L~~lL~~~~~~~ 576 (2100)
+..++..+..++.. ................. -........... ...+.......+. ...++...+
T Consensus 275 ~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~~~~~~~ 343 (458)
T d1ibrb_ 275 ALQGIEFWSNVCDE--EMDLAIEASEAAEQGRP-PEHTSKFYAKGALQYLVPILTQTLTKQDE--------NDDDDDWNP 343 (458)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHCCTTCSSSC-SSCCCCCHHHHHHHHHHHHHHHHTTCCCS--------SCCTTCCSH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhhhHHHhhhH-HHHHHHHHHHHHHHHHhhhHHhhhhcchh--------hhccccccH
Confidence 99999999888753 11111110000000000 000000011111 1111111111100 011234457
Q ss_pred HHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCchHHHHHhh
Q 000133 577 KVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL 656 (2100)
Q Consensus 577 ~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g~v~~Lv~lL 656 (2100)
+..+..++..++...+.. ... . .++.+.+.+.++++..|+.|..+|+.++.+.....-.......+|.++..+
T Consensus 344 ~~~a~~~l~~l~~~~~~~-~~~-~-----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l 416 (458)
T d1ibrb_ 344 CKAAGVCLMLLATCCEDD-IVP-H-----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416 (458)
T ss_dssp HHHHHHHHHHHHHHTTTT-HHH-H-----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhccHh-hhh-H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHh
Confidence 788888888877655432 111 1 266777788999999999999999999865322111123346899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHh
Q 000133 657 DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA 699 (2100)
Q Consensus 657 ~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll 699 (2100)
+++++.++..|+.+|+.++...++.. .....++++++.+
T Consensus 417 ~d~~~~VR~~a~~~l~~i~~~~~~~~----~~~~~l~~ll~~l 455 (458)
T d1ibrb_ 417 KDPSVVVRDTAAWTVGRICELLPEAA----INDVYLAPLLQCL 455 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHGGGGC----CSTTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccc----chhhHHHHHHHHH
Confidence 99999999999999999975432211 1134577777544
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=2.9e-08 Score=102.91 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=77.2
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2053 (2100)
+.|.|+|.+..++... -|.+.-|+++++. +...++|++++++.||+|+|.|.|.+..+. ..++|.|+|++++.||
T Consensus 34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~ 113 (143)
T d1rsya_ 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113 (143)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence 5689999999999532 3446678888773 456678999999999999999998765333 4568999999999999
Q ss_pred Ccc-cceEEEEEeeEEeecccccceee
Q 000133 2054 KSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
++. +|+|.|.+..+-.......=|.|
T Consensus 114 ~~~~iG~~~i~L~~~~~~~~~~~W~~L 140 (143)
T d1rsya_ 114 KHDIIGEFKVPMNTVDFGHVTEEWRDL 140 (143)
T ss_dssp CCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred CCcEEEEEEEEchhccCCCCCccEEeC
Confidence 875 59999999886433333344444
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=5.1e-08 Score=99.09 Aligned_cols=88 Identities=25% Similarity=0.340 Sum_probs=70.5
Q ss_pred CCceeeeeccchhhhh--hCCCcceEEEecC--CCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCccC
Q 000133 1979 GTLVVIIKRGNNMKQS--VGNPSVYCKLTLG--NTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSKMG 2053 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 2053 (2100)
|.|.|+|.+..++... .|.+.-++++.++ ....++|+|++++.||+|+|.|.|.+..+. ..+.|.|+|++++.||
T Consensus 18 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~ 97 (130)
T d1dqva1 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 97 (130)
T ss_dssp CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCC
Confidence 5699999999999543 3446688999885 345678999999999999999999876443 3568999999999998
Q ss_pred Ccc-cceEEEEEee
Q 000133 2054 KSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2054 ~~~-~~~~~~~~~~ 2066 (2100)
++. +|+|.|.+..
T Consensus 98 ~d~~iG~~~i~~~~ 111 (130)
T d1dqva1 98 RHDLIGQVVLDNLL 111 (130)
T ss_dssp CCCEEEEEECCCTT
T ss_pred CCceEEEEEECchh
Confidence 865 5999986543
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4.2e-08 Score=99.04 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=70.9
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEecC----CCCCccccccccCCCccccccceeccccCC--CCCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTLG----NTPPRQTKIVSTGPNPEWEESFAWSFEIPP--KGQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 2050 (2100)
+-|.|+|.+..++.. ..|.+..|+++.+. +...++|++++++.+|+|||.|.|..-.++ .+..|+|++++++
T Consensus 14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~ 93 (125)
T d2bwqa1 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93 (125)
T ss_dssp TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence 568999999999963 34445578877762 333467999999999999999999743233 3458999999999
Q ss_pred ccCCc---ccceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKS---SFGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.|+++ .+|+|.|++.++..++. .+-|.|
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 94 RVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp ------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred CCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 88665 48999999988755443 456665
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1e-07 Score=97.90 Aligned_cols=94 Identities=20% Similarity=0.383 Sum_probs=72.0
Q ss_pred CCceeeeeccchhhh--hhCC-CcceEEEec--CCCCCccccccccCCCccccccceeccccCCC---CCeEEEEeecCC
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGN-PSVYCKLTL--GNTPPRQTKIVSTGPNPEWEESFAWSFEIPPK---GQKLHISCKNKS 2050 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 2050 (2100)
+.|+|+|.+..++.. ..|. +..++++.+ +....++|||+.++.||.|+|.|.|.. .++. +..|+|++++++
T Consensus 22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~-~~~~~l~~~~L~~~V~d~d 100 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG-IPYTQIQELALHFTILSFD 100 (138)
T ss_dssp TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEEC-CCSTTGGGCEEEEEEEEEC
T ss_pred CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEee-eCHHHcccceEEEEEEECC
Confidence 468999999999953 3444 457777777 345567899999999999999999852 2332 348999999999
Q ss_pred ccCCcc-cceEEEEEeeEEe-eccc
Q 000133 2051 KMGKSS-FGKVTIQIDRVVM-LGAV 2073 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~-~~~~ 2073 (2100)
.|+++. +|+|.|+|+++-. ++.+
T Consensus 101 ~~~~~~~iG~~~i~L~~~~~~~~~~ 125 (138)
T d1ugka_ 101 RFSRDDIIGEVLIPLSGIELSEGKM 125 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCTTCCE
T ss_pred CCCCCcEEEEEEEEcccccCCCCeE
Confidence 998655 5999999999743 4443
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.25 E-value=2e-07 Score=95.72 Aligned_cols=101 Identities=24% Similarity=0.297 Sum_probs=76.2
Q ss_pred CCceeeeeccchhhh--hhCCCcceEEEec----CCCCCccccccccCCCccccccceeccccCC-CCCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMKQ--SVGNPSVYCKLTL----GNTPPRQTKIVSTGPNPEWEESFAWSFEIPP-KGQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++.. .-|.+..++++.+ +....++|+|++++.+|.|+|.|.|.+..+. .+..|.|.|+++++
T Consensus 15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~ 94 (137)
T d2cm5a1 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 94 (137)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC
Confidence 568999999999964 3345778888876 3445578999999999999999999875333 24489999999999
Q ss_pred cCCcc-cceEEEEEeeEEeecccccceeecC
Q 000133 2052 MGKSS-FGKVTIQIDRVVMLGAVAGEYTLLP 2081 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 2081 (2100)
++++. +|+|.|.++.+ .+ ....-|.|.+
T Consensus 95 ~~~~~~iG~~~i~l~~~-~~-~~~~W~~l~~ 123 (137)
T d2cm5a1 95 GKSNDYIGGCQLGISAK-GE-RLKHWYECLK 123 (137)
T ss_dssp SSCCEEEEEEEEETTCC-HH-HHHHHHHHHH
T ss_pred CCCCCEEEEEEeCcccc-Cc-chhhhhhHhh
Confidence 98876 69999999764 22 2344466643
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=2.5e-07 Score=94.91 Aligned_cols=88 Identities=15% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCceeeeeccchhh--hhhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCC-eEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQ-KLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2051 (2100)
|.|+|+|.+..++. ...|.++.|+++.+-++ ..++|++++++.||.|+|.|.|.+......+ .|.|.+++++.
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~ 94 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 94 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence 56999999999984 34555678888877322 3457999999999999999998876444444 69999999999
Q ss_pred cCCcc-cceEEEEEee
Q 000133 2052 MGKSS-FGKVTIQIDR 2066 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~ 2066 (2100)
|+++. +|+|.|.++.
T Consensus 95 ~~~~~~iG~~~i~l~~ 110 (138)
T d1w15a_ 95 GSRNEVIGRLVLGATA 110 (138)
T ss_dssp TSCCEEEEEEEESTTC
T ss_pred CCCCCEEEEEEEcchh
Confidence 98765 5999999864
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=2.5e-07 Score=97.27 Aligned_cols=89 Identities=26% Similarity=0.422 Sum_probs=71.5
Q ss_pred CCceeeeeccchhh--hhhCCCcceEEEecCCCC----CccccccccCCCccccccceeccccCCC-CCeEEEEeecCCc
Q 000133 1979 GTLVVIIKRGNNMK--QSVGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIPPK-GQKLHISCKNKSK 2051 (2100)
Q Consensus 1979 ~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 2051 (2100)
|-|+|+|.|..++. ...|.+..|+++.+..+. .++|+|++++.||+|+|.|.|.+..+.. ...|.|.|++++.
T Consensus 25 ~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~ 104 (157)
T d1uowa_ 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104 (157)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC
Confidence 56899999999996 344557788888876443 3579999999999999999987653332 3489999999999
Q ss_pred cCCcc-cceEEEEEeeE
Q 000133 2052 MGKSS-FGKVTIQIDRV 2067 (2100)
Q Consensus 2052 ~~~~~-~~~~~~~~~~~ 2067 (2100)
|+++. +|+|.|.++.+
T Consensus 105 ~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 105 IGKNDAIGKVFVGYNST 121 (157)
T ss_dssp SSCCCEEEEEEEETTCC
T ss_pred CCCCceeEEEEEecccC
Confidence 99876 59999998754
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.05 E-value=4.2e-07 Score=94.20 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=75.6
Q ss_pred CCCceeeeeccchhhh--hhCCCcceEEEecCCCC----CccccccccCCCccccccceeccccC-CCCCeEEEEeecCC
Q 000133 1978 PGTLVVIIKRGNNMKQ--SVGNPSVYCKLTLGNTP----PRQTKIVSTGPNPEWEESFAWSFEIP-PKGQKLHISCKNKS 2050 (2100)
Q Consensus 1978 ~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 2050 (2100)
.|.|+|+|.+..++.. ..|.+..|+++.++... .++|++++++.||+|+|.|.|.+... .....|.|.+++++
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~ 98 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 98 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecC
Confidence 3789999999999853 45556789999886432 35799999999999999998865421 23458999999999
Q ss_pred ccCCcc-cceEEEEEeeEEeecccccceee
Q 000133 2051 KMGKSS-FGKVTIQIDRVVMLGAVAGEYTL 2079 (2100)
Q Consensus 2051 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 2079 (2100)
.||++. +|+|.|.++.+-.+| +..=|.|
T Consensus 99 ~~~~~~~iG~~~i~l~~~~~~~-~~~W~~l 127 (145)
T d1dqva2 99 CIGHNEVIGVCRVGPEAADPHG-REHWAEM 127 (145)
T ss_dssp SSSCCEEEEECCCSSCTTCHHH-HHHHHTS
T ss_pred CCCCCcEEEEEEECchHcCchh-hHHHHHH
Confidence 999875 699999997643333 2333555
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.86 E-value=1.2e-06 Score=85.97 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=90.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcC
Q 000133 493 LESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSD 572 (2100)
Q Consensus 493 L~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~ 572 (2100)
|.++++.+|..|+++|+.+. ...+++|+.+|++.++.++..|+++|+++. ++..++.|..+|.+.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~---~~~~~~~L~~~l~d~ 65 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ---DERAVEPLIKLLEDD 65 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC---SHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc---hhhhHHHHHhhhccc
Confidence 45667778888888776643 236789999999999999999999998764 467899999999999
Q ss_pred CcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Q 000133 573 LPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALA 630 (2100)
Q Consensus 573 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~ 630 (2100)
++.+|..+.++|+.+. ....++.|..+++++++.+|+.|..+|.
T Consensus 66 ~~~VR~~a~~aL~~i~--------------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 66 SGFVRSGAARSLEQIG--------------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp CTHHHHHHHHHHHHHC--------------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHHHhC--------------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998542 2345888999999999999999998873
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.81 E-value=3.7e-06 Score=83.63 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=71.9
Q ss_pred eccchhhhhhCCCcceEEEecCCC----CCccccccccCCCccccccceeccccCCCCCeEEEEeecCCccCCcccceEE
Q 000133 1986 KRGNNMKQSVGNPSVYCKLTLGNT----PPRQTKIVSTGPNPEWEESFAWSFEIPPKGQKLHISCKNKSKMGKSSFGKVT 2061 (2100)
Q Consensus 1986 ~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2061 (2100)
.....++-..|...-+|++.+.+. ..++|++.+++.||+|||.|++..+ .++.|.|.|++++ ++.+|++.
T Consensus 12 ~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~---~~~~l~i~V~d~d---d~~~g~~~ 85 (123)
T d1bdya_ 12 YELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY---EGRVIQIVLMRAA---EDPMSEVT 85 (123)
T ss_dssp EECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC---TTCEEEEEEEEET---TEEEEEEE
T ss_pred eecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEc---cccEEEEEEEEcc---ccccCccE
Confidence 344556666666789999999543 3567999999999999999887765 3689999999975 55678888
Q ss_pred EEEeeEEee-----cccccceeecCCCCCCCCcceEEEEEe
Q 000133 2062 IQIDRVVML-----GAVAGEYTLLPESKSGPSRNLEIEFLW 2097 (2100)
Q Consensus 2062 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2097 (2100)
|.+.++... +....-|.|. +.|+.+ ++++|
T Consensus 86 i~l~~l~~~~~~~~~~~~~W~~L~---~~Gkl~---l~v~~ 120 (123)
T d1bdya_ 86 VGVSVLAERCKKNNGKAEFWLDLQ---PQAKVL---MCVQY 120 (123)
T ss_dssp EEHHHHHHHHHTTTTEEEEEEECB---SSCEEE---EEEEE
T ss_pred EehhheeeccccCCCcccEEEeCC---CCEEEE---EEEEE
Confidence 888877542 2333445564 456644 77777
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.80 E-value=2.3e-06 Score=84.02 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHH
Q 000133 451 LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 530 (2100)
Q Consensus 451 L~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 530 (2100)
|+++++.+|..|+.+|+.+.. .+++.|+++|.++++.+|..|+++|+++.. .+.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 456778888888888877642 268999999999999999999999987653 235799
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCcchHHHHHHHHH
Q 000133 531 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 585 (2100)
Q Consensus 531 Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 585 (2100)
|+.+|++.++.++..|+.+|+.+. ++..++.|..++.++++.+|..|..+|.
T Consensus 58 L~~~l~d~~~~VR~~a~~aL~~i~---~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhccchhHHHHHHHHHHHHhC---ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999983 4678899999999999999998887764
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.66 E-value=0.0013 Score=77.88 Aligned_cols=344 Identities=11% Similarity=0.048 Sum_probs=200.8
Q ss_pred CchHHHHHHHhc-CCHHHHHHHHHHHHhhhccchhhHHHH---hc---CChHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q 000133 54 QAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKVL---LG---GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGG 126 (2100)
Q Consensus 54 g~v~~L~~lL~~-~~~~v~~~aa~~L~~L~~~~~~~~~i~---~~---g~i~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~ 126 (2100)
.++..++.+|.. ..+++.......+..|-.+++-+..+. .. .-.+++..++.+++.-....+...+..++..+
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 467889999986 556777888888888876655333222 11 12345666665555545555555556565521
Q ss_pred CCCcccccchhccCChHHHHHHhhcc-CCCcchHHHHHHHHHHHhccCChhhHHHHH--hcCCHHHHHHhHcc-------
Q 000133 127 AKDYVGSKIFSTEGVVPVLWEQLKNG-LKSGNVVDNLLTGALRNLSTSTEGFWAATV--QAGGIDILVKLLTL------- 196 (2100)
Q Consensus 127 ~~~~~~~~~~~~~g~vp~L~~lL~~~-~~~~~~v~~~a~~aL~nL~~~~~~~~~~i~--~~g~v~~Lv~lL~s------- 196 (2100)
. ..+-..+.++.+...+..- +.++...+..+..+|..+.. .+.+|..+. +...+++++..|+.
T Consensus 154 ~------~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~ 226 (477)
T d1ho8a_ 154 L------HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 226 (477)
T ss_dssp T------CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred c------cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhccccc
Confidence 1 1112223333333333221 22344455566677777764 456766543 44557777777753
Q ss_pred ----------CCHHHHHHHHHHHHHHhhcCcchhhHHhhh--chHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChH---
Q 000133 197 ----------GQSSTQAHVCFLLACMMEEDVSVCSRVLAA--DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD--- 261 (2100)
Q Consensus 197 ----------~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~~~~~--- 261 (2100)
.....+.+++.+++.|+.. +.....+... +.++.|+++++....+.+.+.+..+|.|+.....+
T Consensus 227 ~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~ 305 (477)
T d1ho8a_ 227 TRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 305 (477)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred chhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 1235688999999888764 4466666554 55999999998877789999999999999864221
Q ss_pred --hHHHHHhCCChHHHHHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhCCCcchhhhccccccCCCChhhhhhhhhhhHH
Q 000133 262 --ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALAS 339 (2100)
Q Consensus 262 --~~~~i~~~g~i~~Lv~ll~~~~~e~~~~~~~~~l~~~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ 339 (2100)
....++..++++. +..|.... -.++++.+.- ..|.
T Consensus 306 ~~~~~~~v~~~~l~~-l~~L~~r~------~~Dedl~edl-~~L~----------------------------------- 342 (477)
T d1ho8a_ 306 KVIKQLLLLGNALPT-VQSLSERK------YSDEELRQDI-SNLK----------------------------------- 342 (477)
T ss_dssp HHHHHHHHHHCHHHH-HHHHHSSC------CSSHHHHHHH-HHHH-----------------------------------
T ss_pred hHHHHHHHHcchhHH-HHHHhcCC------CCCHHHHHHH-HHHH-----------------------------------
Confidence 2233445555544 44454321 1223332221 1111
Q ss_pred HHHHhccccCCCCCCCchhhHHHHHhhcCCCCChHHHHHHHHHHHHHhCCCc---------cchhhhcc--ccHHHHHHh
Q 000133 340 ALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL---------LSIKLENS--EAKRLLVGL 408 (2100)
Q Consensus 340 ll~~l~~~~~~~~~~~~~~i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~~~~~---------~~~~l~~~--g~i~~Lv~l 408 (2100)
..++.... ..+.+.....++.. +.|.-.|. +...+.+. ..++.|+.+
T Consensus 343 --~~L~~~~k-----~lTsfd~Y~~Ev~S---------------g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~l 400 (477)
T d1ho8a_ 343 --EILENEYQ-----ELTSFDEYVAELDS---------------KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIEL 400 (477)
T ss_dssp --HHHHHHHH-----TCCHHHHHHHHHHH---------------TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHH
T ss_pred --HHHHHHHH-----hcCcHHHHHHHHhc---------------CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHH
Confidence 01110000 00011111111100 01111111 11223222 346778888
Q ss_pred hc----------CCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 000133 409 IT----------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 470 (2100)
Q Consensus 409 L~----------~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs 470 (2100)
|+ +.|+.+..-||.=++.++...|.-+..+.+.|+-..++.++.+++++|+.+|..++..+.
T Consensus 401 L~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 401 LQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 85 346788889999999999999988888888899999999999999999999999988764
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.0048 Score=73.00 Aligned_cols=344 Identities=12% Similarity=0.025 Sum_probs=200.4
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHh-CCCccch---hhhc-c-ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccCc
Q 000133 359 VEQTLVNQFKPRLPFLVQERTIEALASLY-GNPLLSI---KLEN-S-EAKRLLVGLITMATNEVQEELVRALLKLCNNEG 432 (2100)
Q Consensus 359 i~~~Lv~lL~~~~~~~vq~~aa~aL~~L~-~~~~~~~---~l~~-~-g~i~~Lv~lL~~~~~~v~~~A~~aL~~L~~~~~ 432 (2100)
....++.++...+.+.+.+.+..-+..+. .+|.... ...+ . ....++..++..++.-+...++..+..++....
T Consensus 75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~ 154 (477)
T d1ho8a_ 75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 154 (477)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence 34555666665444434444555555553 3332211 1111 1 122345556666677778888888888877654
Q ss_pred cchHHHHh-CCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHh--cCChHHHHHhccC--------------
Q 000133 433 SLWRALQG-REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA--AGGIPPLVQILES-------------- 495 (2100)
Q Consensus 433 ~~~~~i~~-~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~--~g~i~~Lv~lL~~-------------- 495 (2100)
......-. ......+-.+..+.+.+.+..++.+|..+.. .++.+..+.. ...+++|++.|+.
T Consensus 155 ~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~ 233 (477)
T d1ho8a_ 155 HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN 233 (477)
T ss_dssp CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhccc
Confidence 43221110 0112333344567888899989999999985 6777777643 3456777776642
Q ss_pred ---CCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CcHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHh
Q 000133 496 ---GSAKAKEDSASILRNLCNHSEDIRACVESA--DAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALL 569 (2100)
Q Consensus 496 ---~~~~vre~A~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL 569 (2100)
...+++.+++.++|-|+. +++....+.+. +.++.|+++++. ...++.+.+..+|.|++.......-..+...+
T Consensus 234 ~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 312 (477)
T d1ho8a_ 234 SNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 312 (477)
T ss_dssp --CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 134778899999999997 46666666654 458999999975 56789999999999998644321101111100
Q ss_pred hcCCcchHHHHHHHHHHHHhcc-CchhHHHHhhhccchHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 000133 570 TSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKIL----SSTKEETQAKSASALAGIFETRKDLRESSI 644 (2100)
Q Consensus 570 ~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~i~~~~~i~~Lv~lL----~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~ 644 (2100)
- .......+..|.... +.+|+... +..|-+.| +.-+.-=++.+----++|.+++.+.-+.+-
T Consensus 313 v------~~~~l~~l~~L~~r~~~Dedl~ed-------l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW 379 (477)
T d1ho8a_ 313 L------LGNALPTVQSLSERKYSDEELRQD-------ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFW 379 (477)
T ss_dssp H------HHCHHHHHHHHHSSCCSSHHHHHH-------HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHH
T ss_pred H------HcchhHHHHHHhcCCCCCHHHHHH-------HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHH
Confidence 0 000111222222211 12221111 22222222 222222222222223455554332222222
Q ss_pred hc----------CchHHHHHhhc----------CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCH
Q 000133 645 AV----------KTLWSVMKLLD----------VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL 704 (2100)
Q Consensus 645 ~~----------g~v~~Lv~lL~----------~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~ 704 (2100)
.. ..+..|+++|. +.++.+..-||.=|+.++.+.|.. |..+-+-|+=..++++|.++++
T Consensus 380 ~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-r~il~~lg~K~~vM~Lm~h~d~ 458 (477)
T d1ho8a_ 380 SDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDS 458 (477)
T ss_dssp HHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSH
T ss_pred HHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCH
Confidence 11 26889999985 345677888999999999988744 4436667887888899999999
Q ss_pred HHHHHHHHHHHHHh
Q 000133 705 EVAEQATCALANLI 718 (2100)
Q Consensus 705 evr~~aa~aL~~L~ 718 (2100)
+||.+|..|+..|+
T Consensus 459 ~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 459 RVKYEALKATQAII 472 (477)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.10 E-value=7.9e-05 Score=82.10 Aligned_cols=182 Identities=14% Similarity=0.061 Sum_probs=126.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhhCCCCHHHHHHHHHHHHHhccCCcccHHHHHhcCChH
Q 000133 408 LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 487 (2100)
Q Consensus 408 lL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~v~~~A~~aL~nLs~~~~~~~~~i~~~g~i~ 487 (2100)
.|.++..++|..|++ +-.+..|..+++++++.|+..++.. | +.+
T Consensus 50 ~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~---L---------------p~~ 93 (233)
T d1lrva_ 50 YLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYR---L---------------PRE 93 (233)
T ss_dssp GTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTT---S---------------CSG
T ss_pred HhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHH---c---------------CHH
Confidence 456778888865542 1335667789999999999988743 2 235
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 000133 488 PLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA 567 (2100)
Q Consensus 488 ~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~ 567 (2100)
.|..++.+++..+|..++..| ..+.|..+++++++.++..++..+ ..+.|..
T Consensus 94 ~L~~L~~D~d~~VR~~aa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~~----------~~~~L~~ 145 (233)
T d1lrva_ 94 QLSALMFDEDREVRITVADRL------------------PLEQLEQMAADRDYLVRAYVVQRI----------PPGRLFR 145 (233)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS------------------CTGGGGGGTTCSSHHHHHHHHHHS----------CGGGGGG
T ss_pred HHHHHhcCCChhHHHHHHhcc------------------CHHHHHHHhcCCCHHHHHHHHhcc----------chhHHHH
Confidence 688889999999998776532 124567788899999988877532 1234555
Q ss_pred HhhcCCcchHHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 000133 568 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK 647 (2100)
Q Consensus 568 lL~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~~~~~~~~g 647 (2100)
++++.++++|..+...+ +.+.|..++++.++.+|..++..|.
T Consensus 146 L~~D~d~~VR~~aA~~~---------------------~~~~L~~l~~D~d~~VR~~aa~~L~----------------- 187 (233)
T d1lrva_ 146 FMRDEDRQVRKLVAKRL---------------------PEESLGLMTQDPEPEVRRIVASRLR----------------- 187 (233)
T ss_dssp TTTCSCHHHHHHHHHHS---------------------CGGGGGGSTTCSSHHHHHHHHHHCC-----------------
T ss_pred HhcCCCHHHHHHHHHhc---------------------CHHHHHHHccCCCHHHHHHHHHhcC-----------------
Confidence 67777777776654321 2455677788999999988876541
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000133 648 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 712 (2100)
Q Consensus 648 ~v~~Lv~lL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~ 712 (2100)
.+.|..++++.+..++..++..+ .+.+++.|.+++++||+.++.
T Consensus 188 -~~~L~~l~~D~d~~VR~aaae~~--------------------~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 188 -GDDLLELLHDPDWTVRLAAVEHA--------------------SLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp -GGGGGGGGGCSSHHHHHHHHHHS--------------------CHHHHHHCCCCCHHHHHHHHC
T ss_pred -cHHHHHHHhCCCHHHHHHHHHhc--------------------cHHHHHHhCCCCHHHHHHHHH
Confidence 25677788999988887776321 245667788999999988764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.43 E-value=0.00037 Score=76.55 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=35.2
Q ss_pred HhhcChHHHHHHHhcCCchHHHHHHHHHHHhcccHHHHHHHHhcCCHHHHHHhhcCCChhHHHHHHHH
Q 000133 1355 AAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRA 1422 (2100)
Q Consensus 1355 ~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~L~~lL~~~~~~vr~~A~~a 1422 (2100)
.....+..|..+++++++.+|..|+..|. .+.|..++++++..||..+...
T Consensus 63 a~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~~ 113 (233)
T d1lrva_ 63 VRYSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADR 113 (233)
T ss_dssp HTTSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHhc
Confidence 34455677888899999999998876531 2346666677777777766543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0023 Score=62.64 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred CceeeeeccchhhhhhCCCcceEEEec-C---CCCC-cccc-cc-ccCCCccccccceeccc-cCCCCCeEEEEeecCCc
Q 000133 1980 TLVVIIKRGNNMKQSVGNPSVYCKLTL-G---NTPP-RQTK-IV-STGPNPEWEESFAWSFE-IPPKGQKLHISCKNKSK 2051 (2100)
Q Consensus 1980 ~~~~~~~r~~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 2051 (2100)
+|+|+|.-+..+... ...-|..+.+ | ++.. +.|| ++ +++.||.|+|.|-+.+. ..|.--.|++.|+|++
T Consensus 2 tl~V~Visaq~L~~~--~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d- 78 (122)
T d2zkmx2 2 TLSITVISGQFLSER--SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG- 78 (122)
T ss_dssp EEEEEEEEEESCCSS--CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT-
T ss_pred EEEEEEEEeeCCCCC--CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC-
Confidence 578999988777543 3455666654 4 2222 2344 33 55689999987544443 2344449999999985
Q ss_pred cCCcccceEEEEEeeE
Q 000133 2052 MGKSSFGKVTIQIDRV 2067 (2100)
Q Consensus 2052 ~~~~~~~~~~~~~~~~ 2067 (2100)
.+.+|.+.|+++.+
T Consensus 79 --~~~lG~~~ipl~~l 92 (122)
T d2zkmx2 79 --NKFLGHRIIPINAL 92 (122)
T ss_dssp --TEEEEEEEEEGGGB
T ss_pred --CCEEEEEEEEcccC
Confidence 57789999999865
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=16 Score=47.39 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=92.2
Q ss_pred hHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccCCCcchHHHHHHHHHHHhccC--
Q 000133 97 IPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS-- 173 (2100)
Q Consensus 97 i~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~~~~~~v~~~a~~aL~nL~~~-- 173 (2100)
++.+..+|. +-+++.++.|-..|.++.. ..|....|+..+...+. +..++..|.-.|+|....
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~-------------~p~f~~~L~~i~~~~~~-~~~iR~~A~i~lKn~i~~~W 69 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLET-------------QDGFGLTLLHVIASTNL-PLSTRLAGALFFKNFIKRKW 69 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHHT-------------STTHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhc
Confidence 345666664 5677889999999998875 13667788888876443 445777777788877631
Q ss_pred ---------ChhhHHHHHhcCCHHHHHHhHccCCHHHHHHHHHHHHHHhhcCc-chhhHHhhhchHHHHHHHhcCCCCHH
Q 000133 174 ---------TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEAS 243 (2100)
Q Consensus 174 ---------~~~~~~~i~~~g~v~~Lv~lL~s~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 243 (2100)
+++.+..+. ..++.++.+++..++...+.+++.++..+- +.- .+.++.|++.+++++ ..
T Consensus 70 ~~~~~~~~i~~e~k~~Ik-----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W-----p~ll~~l~~~l~s~~-~~ 138 (959)
T d1wa5c_ 70 VDENGNHLLPANNVELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MV 138 (959)
T ss_dssp BCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TT
T ss_pred ccccccCCCCHHHHHHHH-----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc-----HHHHHHHHHHhCCCC-HH
Confidence 123333233 256666777888999999999988875432 121 356888888888754 46
Q ss_pred HHHHHHHHHHHhhc
Q 000133 244 VRAEAAGALKSLSD 257 (2100)
Q Consensus 244 v~~~Aa~aL~~Ls~ 257 (2100)
.+..+..+|..+..
T Consensus 139 ~~~~~L~~l~~i~k 152 (959)
T d1wa5c_ 139 TNKGVLTVAHSIFK 152 (959)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHH
Confidence 77778888888764
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.86 E-value=1.4 Score=50.23 Aligned_cols=224 Identities=16% Similarity=0.062 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHhcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccCCcccccccCchHHHHHHhc
Q 000133 1413 YMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1492 (2100)
Q Consensus 1413 ~~vr~~A~~aL~~La~~~~~~k~~i~~~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~~~~~~~~~~~v~~Ll~ll~ 1492 (2100)
+..|+--+.+|...++.. ++..+.+.+..+.-... .++.++..+....... ...+..++.++.
T Consensus 71 ~~~r~~~lDal~~~GT~~-----------a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt-----~~~l~~~~~l~~ 133 (336)
T d1lsha1 71 KDYRRWILDAVPAMATSE-----------ALLFLKRTLASEQLTSA-EATQIVASTLSNQQAT-----RESLSYARELLN 133 (336)
T ss_dssp HHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC-----HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhCCHH-----------HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC-----HHHHHHHHHHHc
Confidence 344555667777777664 67777777765544333 3445666665443322 124566666665
Q ss_pred cCC--CCchhHhHHHHHHHHhhcCCCcccccccccCCChHhhhhcc----CCCCHHHHHHHHHHHHHhhccccccccccc
Q 000133 1493 RSE--FGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL----DSPAPAVQQLAAELLSHLLLEEQLQKDPVT 1566 (2100)
Q Consensus 1493 ~~~--~~~~~~~~A~~~L~nL~~~~~~~~~~~~~~~~~l~~Lv~~L----~~~~~~vq~~a~~aL~~l~~~~~~~~~l~~ 1566 (2100)
+.. ..+.+.+.+.-+++++....-.... .....+++++...+ ..++.+-+...+++|||+...
T Consensus 134 ~~~~~~~~~l~~~a~La~gslv~~~c~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------- 202 (336)
T d1lsha1 134 TSFIRNRPILRKTAVLGYGSLVFRYCANTV--SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------- 202 (336)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHHTTCS--SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---------
T ss_pred CcccccchhHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH---------
Confidence 432 3466677788888877432100000 02223445555444 467778888889999999752
Q ss_pred cCchHHHHHHhcc-------CCHHHHHHHHHHHHHhhcCChhHHHhccChHHHHHHhcccCCCchHHHHHHHHHHHHhhh
Q 000133 1567 QQVIGPLIRVLGS-------GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSIL 1639 (2100)
Q Consensus 1567 ~g~i~~Lv~lL~s-------~~~~vr~~Al~AL~~Ls~~~~n~l~~~G~i~~Ll~lL~~~~~~~~~~l~e~a~~~L~~i~ 1639 (2100)
+.++.|...+.+ ....+|..|+.||.++....|... .+.++.+..+. .-...++-.|..+|..-
T Consensus 203 -~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v-----~~~l~~i~~n~--~e~~EvRiaA~~~lm~t- 273 (336)
T d1lsha1 203 -NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNV--AIKSELRIRSCIVFFES- 273 (336)
T ss_dssp -GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCT--TSCHHHHHHHHHHHHHT-
T ss_pred -hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH-----HHHHHHHHcCC--CCChHHHHHHHHHHHhc-
Confidence 455667666643 257899999999999887654322 23345555442 22233344334343321
Q ss_pred cccchhhhcccHHHHHHHhhc-CCHHHHHHHHHHHHHhcc
Q 000133 1640 QFSSEFYLEVPVAVLVRLLRS-GSEGTVIGSLNALLVLES 1678 (2100)
Q Consensus 1640 ~~~~~~~~~~~v~~Lv~ll~~-~~~~~~~~a~~aL~~L~~ 1678 (2100)
+.+. .-+..+...+.. .+..+.......|.++..
T Consensus 274 ~P~~-----~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 274 KPSV-----ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp CCCH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCCH-----HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 0000 123344444432 334555555566655554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=4.8 Score=44.02 Aligned_cols=204 Identities=12% Similarity=0.146 Sum_probs=153.1
Q ss_pred hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChhh----HHHHHh-cCchHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000133 601 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL----RESSIA-VKTLWSVMKLLDVGSECILVEASRCLAAIF 675 (2100)
Q Consensus 601 i~~~~~i~~Lv~lL~s~~~~~~~~Aa~aL~~L~~~~~~~----~~~~~~-~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L~ 675 (2100)
+...+.+..|+..|..-+-+.|+.++....++.+...+. .+-+.. ..++..|+...... ++...+-..|+-..
T Consensus 65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~--eiAl~~G~mLREci 142 (330)
T d1upka_ 65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIMLRECI 142 (330)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCc--chhhhhhHHHHHHH
Confidence 444566888999999999999999999999998764332 232332 23555555555443 34555555555544
Q ss_pred cCCchhHHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cHHHHHHHH---cCcHHHHHHHHccCChhHHHHH
Q 000133 676 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-SEVSEKAIA---EEIILPATRVLCEGTISGKTLA 751 (2100)
Q Consensus 676 ~~~~~~~~~~~~~~~~l~~Lv~ll~~~~~evr~~aa~aL~~L~~~-~~~~~~~v~---~~~v~~L~~ll~~~~~~~~~~A 751 (2100)
.+ ....+. +.....+..+.+.+..++-++...|..++..|+.. +....+++. +.......+++.+++--+|+++
T Consensus 143 k~-e~lak~-iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 143 RH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp TS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hh-HHHHHH-HHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 43 335555 67778888899999999999999999999999854 556666664 3556666788887777789999
Q ss_pred HHHHHHHHhcCccchhHhhhhhccCcHHHHHHhhhhcccccchHhHHHHHHHHHHcCC
Q 000133 752 AAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 809 (2100)
Q Consensus 752 a~aL~~l~~~~~~~~~~~~~~~~~g~l~~li~~l~s~~~~v~~~~al~~L~~L~~~~~ 809 (2100)
..-|++++-...+...+..++....-+.-++.+|++.+..+. .+|..++=-+..++.
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq-~EAFhVFKvFVANpn 277 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQ-FEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHH-HHhhhHhhhhhcCCC
Confidence 999999999999988888988888899999999998888888 888888876644443
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=91.21 E-value=3.3 Score=46.90 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHhhcchhhhhhhhccCCchHHHHHHHhc----CCHHHHHHHHHHHHhh
Q 000133 6 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS----GSLAVKIQAATVLGSL 81 (2100)
Q Consensus 6 ~~~~~v~~~~~~l~~~~~~~~~k~~A~~~L~~l~~~~~~~~~~i~~~~g~v~~L~~lL~~----~~~~v~~~aa~~L~~L 81 (2100)
||.+.+.-+.+.+....-++.+....+..+....+... ..+..+..++.+ +++.++..+.-.++++
T Consensus 85 GT~~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~----------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gsl 154 (336)
T d1lsha1 85 ATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATR----------ESLSYARELLNTSFIRNRPILRKTAVLGYGSL 154 (336)
T ss_dssp CSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH----------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH----------HHHHHHHHHHcCcccccchhHHHHHHHHHHHH
Confidence 45555655666565555454443444444432222111 234555666654 3556666666666655
Q ss_pred h----ccchhhHHHHhcCChHHHHHhh----cCCCHHHHHHHHHHHHHHhccCCCCcccccchhccCChHHHHHHhhccC
Q 000133 82 C----KENELRVKVLLGGCIPPLLGLL----KSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 153 (2100)
Q Consensus 82 ~----~~~~~~~~i~~~g~i~~Lv~lL----~s~~~~~~~~A~~aL~~Ls~~~~~~~~~~~~~~~~g~vp~L~~lL~~~~ 153 (2100)
. .+++.+. ...++.+...+ ..++.+.+..+.+||+|+.. ...++.|...+....
T Consensus 155 v~~~c~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------------p~~i~~l~~~l~~~~ 216 (336)
T d1lsha1 155 VFRYCANTVSCP----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------------PNSIKKIQRFLPGQG 216 (336)
T ss_dssp HHHHHTTCSSCC----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------------GGGHHHHHTTSTTSS
T ss_pred HHHHhcCCCCCc----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------------HhHHHHHHHHhcccc
Confidence 4 3332221 11234444444 46777778888999999875 124677777775432
Q ss_pred ----CCcchHHHHHHHHHHHhccCChhhHHHHHhcCCHHHHHHhHcc--CCHHHHHHHHHHHHHHhhcCcchhhHHhhhc
Q 000133 154 ----KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAAD 227 (2100)
Q Consensus 154 ----~~~~~v~~~a~~aL~nL~~~~~~~~~~i~~~g~v~~Lv~lL~s--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g 227 (2100)
..+..++..+.++|+++....+... .+.+.++..+ .++++|..|..+|. ...+ ...
T Consensus 217 ~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm---~t~P-------~~~ 278 (336)
T d1lsha1 217 KSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFF---ESKP-------SVA 278 (336)
T ss_dssp SCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHH---HTCC-------CHH
T ss_pred cccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHH---hcCC-------CHH
Confidence 2234588889999999986653321 2355666554 46788888777662 2223 123
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 000133 228 ATKQLLKLLGSGNEASVRAEAAGALKSLSD 257 (2100)
Q Consensus 228 ~i~~Lv~lL~~~~~~~v~~~Aa~aL~~Ls~ 257 (2100)
.+..+...+....+..+.......|.+++.
T Consensus 279 ~l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 279 LVSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 467777888777777888888889999886
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.10 E-value=51 Score=42.12 Aligned_cols=247 Identities=10% Similarity=0.097 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHhCCcHHHHHHhh----C--CCCHHHHHHHHHHHHHhccCCcc------------
Q 000133 414 NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL----G--LSSEQQQECSVALLCLLSNENDD------------ 475 (2100)
Q Consensus 414 ~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL----~--s~~~~v~~~A~~aL~nLs~~~~~------------ 475 (2100)
...+..+...+..++...... +. ....+.+...+ . +.+...++.+..+++.+......
T Consensus 375 ~~~r~~a~~ll~~l~~~~~~~---~~-~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~ 450 (959)
T d1wa5c_ 375 DTRRRACTDFLKELKEKNEVL---VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (959)
T ss_dssp -CHHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred ccHHHHHHHHHHHHHHhcccc---ch-HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchh
Confidence 345667777777777664331 11 01122222222 2 34566677777777666431110
Q ss_pred cHHHHHhcCChHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000133 476 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 555 (2100)
Q Consensus 476 ~~~~i~~~g~i~~Lv~lL~~~~~~vre~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~aL~~L~~ 555 (2100)
.-...... .+.+.+.........+|..++|.+...+.... .... ...++.++..|++.+..++..|++++..++.
T Consensus 451 ~~~~~l~~-~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~ 525 (959)
T d1wa5c_ 451 NVVDFFTK-EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILT 525 (959)
T ss_dssp CHHHHHHH-HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHH-HHHHHHccCCCchHHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 00111111 11222222233467899999999999886422 1222 2478999999999999999999999999986
Q ss_pred CCCC------------------CcHHHHHHHhhcCCcch-----HHHHHHHHHHHHhccCchhHHHHhhhccchHHHHHH
Q 000133 556 KSDT------------------ATISQLTALLTSDLPES-----KVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 612 (2100)
Q Consensus 556 ~~~~------------------~~i~~L~~lL~~~~~~~-----~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~i~~Lv~ 612 (2100)
.... ..+..++..+....... ..+...++..+....+..- ... ....++.|..
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~--~~~--~~~i~~~l~~ 601 (959)
T d1wa5c_ 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI--QPL--FPQLLAQFIE 601 (959)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT--GGG--HHHHHHHHHH
T ss_pred hhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHH
Confidence 3221 12334444444433321 2346666666554332110 000 0112444444
Q ss_pred Hh----cC-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000133 613 IL----SS-TKEETQAKSASALAGIFETR-KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 674 (2100)
Q Consensus 613 lL----~s-~~~~~~~~Aa~aL~~L~~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~aa~aL~~L 674 (2100)
.+ ++ .++........++..+.... ++... ......+|.+...+..........+...+..+
T Consensus 602 ~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~ 668 (959)
T d1wa5c_ 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (959)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 33 22 35667777777888776543 22222 23334567777776554444444444444444
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=27 Score=37.90 Aligned_cols=200 Identities=12% Similarity=0.066 Sum_probs=141.6
Q ss_pred hhhcCChHHHHHhhccCChhhHHHHHHHHHHhhcCCc-----hhhHHHHhhhcchhHHHHHHHhhcCChhhHHHHHHHHH
Q 000133 1268 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENP-----SRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCG 1342 (2100)
Q Consensus 1268 i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~La~~~~-----~~~~~~~~v~~gal~~L~~lL~~~~~~~~~~~a~~~L~ 1342 (2100)
+...+.+..|+.-|..-+-+.++.+.....++-.... .-.+++. ...++..| +....+.++--.+-.+|+
T Consensus 65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L---~~gye~~eiAl~~G~mLR 139 (330)
T d1upka_ 65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFML---LKGYESPEIALNCGIMLR 139 (330)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHH---HHGGGSTTTHHHHHHHHH
T ss_pred HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHH---HhhcCCcchhhhhhHHHH
Confidence 4456778999999999999999998887777764221 1133321 12233333 333345677777888888
Q ss_pred HHhcCcchHHHHHhhcChHHHHHHHhcCCchHHHHHHHHHHHhcc-cHHHHHHHHhc---CCHHHHHHhhcCCChhHHHH
Q 000133 1343 VLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-DEQLAELVAAH---GAVIPLVGLLYGRNYMLHEA 1418 (2100)
Q Consensus 1343 ~L~~~~~~r~~~~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~---g~i~~L~~lL~~~~~~vr~~ 1418 (2100)
...+++.....+-.......+...+..++-++-..|...+..+.. ........... ..+...-.+|.+++.-+|+.
T Consensus 140 Ecik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq 219 (330)
T d1upka_ 140 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 219 (330)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence 888888887778777788888888888999999999999888873 33322222222 24567778999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHHh----cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccC
Q 000133 1419 ISRALVKLGKDRPSCKLEMVK----AGVIESVLDILHEAPDFLCSAFAELLRILTNNAG 1473 (2100)
Q Consensus 1419 A~~aL~~La~~~~~~k~~i~~----~~~i~~lv~~L~~~~~~~~~~aa~lL~~Ls~~~~ 1473 (2100)
++..|+.+-.++ .+...|.. ..-+..+..+|.+....++-+|-.++.....++.
T Consensus 220 SlKLLgelLldr-~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn 277 (330)
T d1upka_ 220 SLKLLGELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHHHHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence 999999999885 66666633 5667788888988887777766655544444443
|