Citrus Sinensis ID: 000139
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2062 | 2.2.26 [Sep-21-2011] | |||||||
| Q6FK48 | 1450 | Helicase SWR1 OS=Candida | yes | no | 0.392 | 0.558 | 0.457 | 0.0 | |
| Q759G7 | 1486 | Helicase SWR1 OS=Ashbya g | yes | no | 0.370 | 0.514 | 0.464 | 0.0 | |
| Q5ARK3 | 1698 | Helicase swr1 OS=Emericel | yes | no | 0.377 | 0.458 | 0.480 | 0.0 | |
| Q6CJ38 | 1572 | Helicase SWR1 OS=Kluyvero | yes | no | 0.358 | 0.470 | 0.471 | 0.0 | |
| Q05471 | 1514 | Helicase SWR1 OS=Saccharo | yes | no | 0.365 | 0.497 | 0.468 | 0.0 | |
| Q59U81 | 1641 | Helicase SWR1 OS=Candida | N/A | no | 0.358 | 0.450 | 0.463 | 0.0 | |
| Q4WAS9 | 1695 | Helicase swr1 OS=Neosarto | yes | no | 0.385 | 0.468 | 0.461 | 0.0 | |
| Q6BKC2 | 1616 | Helicase SWR1 OS=Debaryom | yes | no | 0.362 | 0.462 | 0.466 | 0.0 | |
| O13682 | 1288 | Helicase swr1 OS=Schizosa | yes | no | 0.382 | 0.611 | 0.461 | 0.0 | |
| Q7S133 | 1845 | Helicase swr-1 OS=Neurosp | N/A | no | 0.382 | 0.427 | 0.450 | 0.0 |
| >sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1 | Back alignment and function desciption |
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Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/855 (45%), Positives = 539/855 (63%), Gaps = 45/855 (5%)
Query: 469 LTEKQEGGSEKKSEEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFPFLLKFPLREY 528
LT+ E ++ E S+N +D A + P + T P LL+ LR Y
Sbjct: 580 LTDDSEDSND--GEHDTTSDNEKSDLFPADTTNDPLAVQDVPT------PSLLRGTLRTY 631
Query: 529 QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLN 588
Q GL+WL ++Y NGILADEMGLGKTI TI++L++LACEK WGPHLIVVPTSV+LN
Sbjct: 632 QKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLN 691
Query: 589 WETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWK 648
WE EF ++ P FK+LTY+G+ ++RK KR+GW KP++FHVCI +Y+LI+QD FKRKKW+
Sbjct: 692 WEMEFKRFAPGFKVLTYYGNPQQRKEKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKKWQ 751
Query: 649 YLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHI----- 703
Y++LDEAH IKN++S RWQ LLNFN++RRILLTGTPLQN++ ELWSL++FLMP
Sbjct: 752 YMVLDEAHNIKNFRSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFLMPQTVIDGQ 811
Query: 704 ----FQSHQEFKDWFCNPISGMVEG-----QEKVNKEVVDRLHNVLRPFILRRLKRDVEK 754
F F+ WF P+ ++E Q+ K V++LH VLRP++LRRLK DVEK
Sbjct: 812 KVSGFADLDAFQQWFGRPVDKLIETGGTYEQDNETKRTVEKLHQVLRPYLLRRLKADVEK 871
Query: 755 QLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLF 814
Q+P K EH++YC+LSKRQR LY+DF++ ++T+ATLAS NF +++ +MQLRKVCNHPDLF
Sbjct: 872 QIPGKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCNHPDLF 931
Query: 815 EGRPIVSSF----DMSGIDSQLSSSVCSMLSPSPLST-ADLKGLGLLFTNLDFSMNSWES 869
E RPI +SF + S+ ++S+ + T DL+ + L FTN D S+ +
Sbjct: 932 EVRPIKTSFLFGESVIARYSERANSITRRIHFHDKDTLVDLQNINLQFTNNDLEKTSYHT 991
Query: 870 DELNAIATPASLIKERADL--NNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQD 927
+ +N +A ++E L N EE H K +N +I + ++++ E ++
Sbjct: 992 NTINKLACINEFVEEVQKLRKQNAEEERQKSRHLK-INTQNI-SNFYEEFMQQKLDEQEN 1049
Query: 928 RASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPV 987
+ + + + NS RC +K VY +L LL + H V + + D++
Sbjct: 1050 KINFIGYLNSQRCSRKTVYGMNLIRLLEMPH----------VSNNCIDDPNYDDLIKPLQ 1099
Query: 988 ERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKC--SEVLSPLLFPIR 1045
R +E F P A + + + G F+ P K E L L P
Sbjct: 1100 TRLLDGRTTIEKFAVLTPGA-VTSNIGELT-LGMDEFVTPNSKSGIIPYEELVQLDNPFH 1157
Query: 1046 PAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLY 1105
+ + FPD+ L+Q+DCGKLQ+LAILL++LK GHRALIFTQMTK+LDILE+F++ +
Sbjct: 1158 QVQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLKDGGHRALIFTQMTKVLDILEQFLNYH 1217
Query: 1106 GYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNP 1165
GY YMRLDG+T+ E+RQ L +RFN++PKI +FILS+RSGG+GINL GADTVIFYDSDWNP
Sbjct: 1218 GYLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1277
Query: 1166 AMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFK 1225
AMD+Q QDRCHRIGQTR+VHIYR +SE TIE NILKKANQKR LDD++IQ G + T++F
Sbjct: 1278 AMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFS 1337
Query: 1226 KLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMALKRAEQE 1285
KL +LF + + + + + +E +E L EDE D A A +E
Sbjct: 1338 KLSVKDLFGSDVVGDLPVIDTKPLLGSDSEAIKDPKKLEKLLAQAEDEDDVKAANSALRE 1397
Query: 1286 EAVDNQEFTEEAVGR 1300
VD+++F E + +
Sbjct: 1398 VNVDDEDFDESSTNK 1412
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Catalytic component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWR1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SWR1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2 | Back alignment and function description |
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| >sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swr1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2062 | ||||||
| 255564822 | 2029 | Helicase, putative [Ricinus communis] gi | 0.973 | 0.989 | 0.730 | 0.0 | |
| 356498438 | 2041 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.990 | 0.694 | 0.0 | |
| 356533141 | 2057 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.984 | 0.681 | 0.0 | |
| 297829816 | 2057 | photoperiod-independent early flowering | 0.976 | 0.979 | 0.653 | 0.0 | |
| 449437916 | 2003 | PREDICTED: helicase domino-like [Cucumis | 0.961 | 0.989 | 0.658 | 0.0 | |
| 42564102 | 2055 | helicase SWR1 [Arabidopsis thaliana] gi| | 0.972 | 0.976 | 0.648 | 0.0 | |
| 11994423 | 2061 | helicase-like protein [Arabidopsis thali | 0.972 | 0.972 | 0.645 | 0.0 | |
| 224070615 | 1682 | chromatin remodeling complex subunit [Po | 0.803 | 0.985 | 0.730 | 0.0 | |
| 357111618 | 2015 | PREDICTED: uncharacterized protein LOC10 | 0.950 | 0.972 | 0.572 | 0.0 | |
| 449501953 | 1602 | PREDICTED: LOW QUALITY PROTEIN: helicase | 0.751 | 0.966 | 0.703 | 0.0 |
| >gi|255564822|ref|XP_002523405.1| Helicase, putative [Ricinus communis] gi|223537355|gb|EEF38984.1| Helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2794 bits (7244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1501/2056 (73%), Positives = 1705/2056 (82%), Gaps = 48/2056 (2%)
Query: 20 KALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQASRGE 79
+ALEAP+E RRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQA+R E
Sbjct: 9 EALEAPKELRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATREE 68
Query: 80 KKLKEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTE 139
+KLKEEEQR+RKVA+NISKDVKKFW+KIEKLVLYKHQME+D +KKKALDKQLEFLLGQTE
Sbjct: 69 RKLKEEEQRMRKVALNISKDVKKFWIKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTE 128
Query: 140 RYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADENGAEEPGVQSKEADEDDAEQHSGFE 199
RYS+MLAENL D K + Q + +QP I Y++ + +EP E +D
Sbjct: 129 RYSTMLAENLGD--KSLLQHSILDQPSISYEKGHKCDTKEPA----ELVDD--------- 173
Query: 200 PQLDAADIDEEYDVHSEDESEDDEHTIEEDEALITEEERKEELEALHNETDIPLQELLKR 259
PQLD AD D++YDV S DESEDDE TI++DEALITEEER+EEL ALHNE DIPL ELLKR
Sbjct: 174 PQLDTADNDDDYDVQS-DESEDDERTIDQDEALITEEERREELAALHNEIDIPLVELLKR 232
Query: 260 YAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLS 319
YA KV RE++ E GE+ A+ +V E G + +L + + +S + ++NG L
Sbjct: 233 YAALKVSRENTPERGENGADLSVEEGGPAESK---MLIMNHVSSSNLSLLDMTDVNGALL 289
Query: 320 ISENHLLDIETSQVRDTSKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDETTLSEEE 379
+ +N LL+ E + ++ S ++ AL+DF++EQEDGDFV+ GE+KDDETTLSEEE
Sbjct: 290 MKDNCLLETEMGESKNQPDTSLDPAKEHALFDFNEEQEDGDFVLVNGEEKDDETTLSEEE 349
Query: 380 ELAKADSNNYIDEIALLQKESEIPVEELLARYRKDMKINKISEDESDYASALSDDLSDSP 439
EL K D N +EI LLQKESE+P+ ELLARY ++ N++SEDES+Y SALSD+L DSP
Sbjct: 350 ELEKDDPTNPKNEILLLQKESEMPLIELLARYNEEFN-NEVSEDESEYTSALSDNLLDSP 408
Query: 440 AHEDGELKLENDFMDGNVDPGASQLVMLPLTEKQEGGSEKKSEEGRESENRIADAAAAAR 499
+D EL+ ++ MD NV+PG S V+ +QE +EK +EEG ESENRIADAAAAAR
Sbjct: 409 DKQDVELRQQDVSMDENVEPGKSLPVLDHSVNEQER-NEKIAEEGNESENRIADAAAAAR 467
Query: 500 SAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM 559
SAQPTG TFSTT+VRTKFPFL+K+PLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM
Sbjct: 468 SAQPTGNTFSTTKVRTKFPFLIKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIM 527
Query: 560 TIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGW 619
TIA+LAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERK KRQGW
Sbjct: 528 TIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGW 587
Query: 620 LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 679
LKPNSFHVCITTYRL+IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL
Sbjct: 588 LKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRIL 647
Query: 680 LTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNV 739
LTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK+WF NPISGMVEGQE+VNKEVVDRLHNV
Sbjct: 648 LTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKEWFSNPISGMVEGQERVNKEVVDRLHNV 707
Query: 740 LRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMIS 799
LRPFILRRLKRDVEKQLPMK EHVIYCRLSKRQRNLYEDFIASSETQATLASA+FFGMIS
Sbjct: 708 LRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASASFFGMIS 767
Query: 800 VIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTN 859
+IMQLRKVCNHPDLFEGRPI+SSFDM GID QL+SSVCSMLSP P S+ DL GLGLLFT+
Sbjct: 768 IIMQLRKVCNHPDLFEGRPIISSFDMIGIDFQLNSSVCSMLSPGPFSSVDLSGLGLLFTH 827
Query: 860 LDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIFEKIRKALLE 919
LDF+M SWE DE+NAIATP+ LI+ERA+++++EE+GP RKRL GT+IFE+IRKAL E
Sbjct: 828 LDFNMTSWECDEINAIATPSRLIEERANIDSIEEIGPQSKQRKRLPGTNIFEEIRKALFE 887
Query: 920 ERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKL 979
ER REA++RA+S+AWWNSLRC+KKP+YST+L+ELLT+K+PV DI QK R SYLYSSKL
Sbjct: 888 ERLREARERAASIAWWNSLRCRKKPIYSTNLQELLTIKNPVDDIYCQKVDRVSYLYSSKL 947
Query: 980 ADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSP 1039
AD++LSPVERF RM LVESFMFAIPAARAP P CWCSK+G+SVFL PTYKEKCSE+L P
Sbjct: 948 ADVILSPVERFHRMTDLVESFMFAIPAARAPVPTCWCSKTGSSVFLHPTYKEKCSELLLP 1007
Query: 1040 LLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILE 1099
LL PIRPAI+RRQVYFPDRRLIQFDCGKLQ+LA+LLR+LKS+GHRALIFTQMTKMLDILE
Sbjct: 1008 LLSPIRPAIIRRQVYFPDRRLIQFDCGKLQKLAVLLRRLKSEGHRALIFTQMTKMLDILE 1067
Query: 1100 EFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFY 1159
FI+LYGYTYMRLDGSTQPE+RQTLMQRFNTNPKIFLFILSTRSGGVGINL GADTVIFY
Sbjct: 1068 AFINLYGYTYMRLDGSTQPEQRQTLMQRFNTNPKIFLFILSTRSGGVGINLFGADTVIFY 1127
Query: 1160 DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1219
DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY
Sbjct: 1128 DSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGY 1187
Query: 1220 NTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMAL 1279
NTEFFKKLDPMELFSGH+ LP K QKEK +++GNE SLSNADVEAALK EDEADYMAL
Sbjct: 1188 NTEFFKKLDPMELFSGHKALPAKNAQKEKILSHGNEDSLSNADVEAALKYAEDEADYMAL 1247
Query: 1280 KRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDP 1339
K+ EQEEAVDNQEFT EA+G+ EDDELV +D ++ DEPTD + N D+G L D
Sbjct: 1248 KKVEQEEAVDNQEFT-EAIGKLEDDELVNDDDLKADEPTDLEMTI-QNKDSGTDLNAKDS 1305
Query: 1340 KEERALTFAAKEDDVDMLADVKQMAAAAAAAGEAISSFENQLRPIDRYAIRFLELWDPII 1399
+ER LTFAA DDVDMLADVKQMAAAAAA G+AIS+ ENQLRPIDRYAIRFLELWDPII
Sbjct: 1306 TDERTLTFAANGDDVDMLADVKQMAAAAAAGGQAISTLENQLRPIDRYAIRFLELWDPII 1365
Query: 1400 DKTAVESEVKFEEREWELDRIEKYKEEMEAEIDDDEEPLVYERWDADFATEAYRQQV-AL 1458
DK A+E EV+FEE EWELDRIEKYKEEMEAEIDDDEEPL+YE WDADFATEAYRQQV AL
Sbjct: 1366 DKAAMECEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLIYETWDADFATEAYRQQVEAL 1425
Query: 1459 AQHQLMEELESEAKEKEDADDGILDSV---KASHSKSKTKKKPKKAKFKSLKKGALTSES 1515
AQHQLMEELE+EA EKE+ADDG D + S+ K K+KKKPKKAKFKSLKKG+LTSE
Sbjct: 1426 AQHQLMEELEAEANEKENADDGYCDPMMIDMPSNPKPKSKKKPKKAKFKSLKKGSLTSEL 1485
Query: 1516 KAVKEEPSVEPMSIDDDFYDEDATFSDAMSPPSTSQKKRKKAELALYDDEEREKISKKKS 1575
K VKEEPSVE MSIDD DA++ + + S Q+KR++ E D E K SKKKS
Sbjct: 1486 KHVKEEPSVESMSIDD-----DASYHEEV---SAVQRKRRRVETL---DIELGKSSKKKS 1534
Query: 1576 KKLKKSIPVRSPDSDSKLSRKRHDGSTELKTCESIFIDLEQKSASRSKMGGKISITAMPV 1635
KLKK+ D DS LS K+ D S E K CE++ D+EQK A RSKMGG+ISITAMPV
Sbjct: 1535 NKLKKAPETCLSDLDSNLSGKQQDDSMESKPCENMVADIEQKPAGRSKMGGRISITAMPV 1594
Query: 1636 KRVLMIKPEKLKKGNVWSRDCVPSPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTAS 1695
KRVLMI+PEKLKKGNVWSRDCVP PD WLPQEDAILCAVVHEYGP+WSLVS+ LYGMTA
Sbjct: 1595 KRVLMIRPEKLKKGNVWSRDCVPPPDSWLPQEDAILCAVVHEYGPHWSLVSETLYGMTAG 1654
Query: 1696 GYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSGKALLKVTEDNVRTLLNV 1755
G+YRGRYRHPVHCCERFRELIQRY+LS P+N INEK N GSGKALLKVTEDN++ LLN
Sbjct: 1655 GFYRGRYRHPVHCCERFRELIQRYVLSTPENPINEKACNTGSGKALLKVTEDNIQKLLNF 1714
Query: 1756 AAEQEDNELLLQKHFTALLSSVWRMKSRMGCRQNFSSSRNGLYLGGSFFSSVTQTSCKST 1815
A EQ D+ELLLQKHFTALLSSVWRM SR + +FSSSRNGLY GG FSS Q S S
Sbjct: 1715 ATEQPDHELLLQKHFTALLSSVWRMTSRTDRQPHFSSSRNGLYFGGRLFSSFNQISLNSM 1774
Query: 1816 REPARRVKFTNLGQSSKLLSAALHDANSRQQDDKVSNFDRREDGPVI-EQLDLTLEFQRE 1874
+EPA+R++ TNL +SS+LL++ALH+ANSR DD VS +R E+ P EQL++TLEF++E
Sbjct: 1775 KEPAKRMRITNLSESSRLLASALHEANSRPMDDTVSILNRMENVPSTSEQLEITLEFEKE 1834
Query: 1875 LVDSTISFPPRVNLSVYGSDLETSVNKSTRENHHLKDS-QVAENRFRDAARACIEDSLGW 1933
DS + PP +NLS+ SD + + K E + +K S VAE+RFRDAARAC E LGW
Sbjct: 1835 ETDSLVPLPPVINLSIPLSDSQRFITKDVGEENRIKASMNVAESRFRDAARACDEGGLGW 1894
Query: 1934 ASSAFPANDAKLRSVPKSQSLGKHKLSLSDSVKCPKSKLRKTSMEHSEI-QHSSPEPV-- 1990
ASSAFPAND KLR PK QSLGKHK SL D+VK P+SKL++T +EH EI Q+ EPV
Sbjct: 1895 ASSAFPANDIKLRPGPKPQSLGKHKPSLPDTVKPPRSKLKRT-LEHGEIHQYLLAEPVFQ 1953
Query: 1991 SNQSVATKDANLRFDL----IQEAWLEDMDGGRLSCMDQDLSLETVLSSEIPHNYFPDVI 2046
S +V+ +D NL+FDL +Q+ W D G +SC D +LSLE +PHNY PD+I
Sbjct: 1954 SPHAVSPRDPNLKFDLTPAVLQDGWTNDTYGYSISCFDNELSLEIGSLEAVPHNYVPDLI 2013
Query: 2047 SGLDDCSILPDYTDIG 2062
SGLDDCS+LP++TDIG
Sbjct: 2014 SGLDDCSLLPEFTDIG 2029
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498438|ref|XP_003518059.1| PREDICTED: uncharacterized protein LOC100794898 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356533141|ref|XP_003535126.1| PREDICTED: uncharacterized protein LOC100795613 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297829816|ref|XP_002882790.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp. lyrata] gi|297328630|gb|EFH59049.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449437916|ref|XP_004136736.1| PREDICTED: helicase domino-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|42564102|ref|NP_187887.3| helicase SWR1 [Arabidopsis thaliana] gi|30984019|gb|AAP40633.1| photoperiod independent early flowering1 [Arabidopsis thaliana] gi|332641727|gb|AEE75248.1| helicase SWR1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|11994423|dbj|BAB02425.1| helicase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|224070615|ref|XP_002303179.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222840611|gb|EEE78158.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|357111618|ref|XP_003557609.1| PREDICTED: uncharacterized protein LOC100821638 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
| >gi|449501953|ref|XP_004161503.1| PREDICTED: LOW QUALITY PROTEIN: helicase domino-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2062 | ||||||
| TAIR|locus:2087780 | 2055 | PIE1 "PHOTOPERIOD-INDEPENDENT | 0.942 | 0.945 | 0.595 | 0.0 | |
| UNIPROTKB|Q6ZRS2 | 3230 | SRCAP "Helicase SRCAP" [Homo s | 0.158 | 0.101 | 0.712 | 1.7e-243 | |
| UNIPROTKB|E1BC33 | 3242 | LOC788113 "Uncharacterized pro | 0.158 | 0.100 | 0.712 | 6.9e-243 | |
| UNIPROTKB|F1RG74 | 3230 | SRCAP "Uncharacterized protein | 0.158 | 0.101 | 0.712 | 3.1e-242 | |
| RGD|1565642 | 3182 | Srcap "Snf2-related CREBBP act | 0.158 | 0.102 | 0.712 | 4.4e-239 | |
| DICTYBASE|DDB_G0267638 | 3069 | DDB_G0267638 "CHR group protei | 0.185 | 0.124 | 0.597 | 1.4e-238 | |
| FB|FBgn0020306 | 3198 | dom "domino" [Drosophila melan | 0.263 | 0.169 | 0.478 | 1.5e-234 | |
| WB|WBGene00007027 | 2395 | ssl-1 [Caenorhabditis elegans | 0.156 | 0.134 | 0.670 | 4.1e-205 | |
| ASPGD|ASPL0000041040 | 1698 | AN9077 [Emericella nidulans (t | 0.372 | 0.452 | 0.483 | 1.4e-199 | |
| POMBASE|SPAC11E3.01c | 1288 | swr1 "SNF2 family helicase Swr | 0.367 | 0.587 | 0.475 | 2.7e-197 |
| TAIR|locus:2087780 PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5710 (2015.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 1198/2013 (59%), Positives = 1390/2013 (69%)
Query: 1 MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
MASK +SK D+E+RA+RQK LEAP+EPRRPKTHWDHVLEEM WLSKDFESERKWKLAQA
Sbjct: 14 MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73
Query: 61 KKVALRASKGMLDQASRGXXXXXXXXXXXXXVAVNISKDVKKFWMKIEKLVLYKHQMEVD 120
KKVALRASKGMLDQASR VA+NISKD+KKFWMK+EKLVLYKHQ+ +
Sbjct: 74 KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKLVLYKHQLVRN 133
Query: 121 VRKKKALDKQLEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADENGAEE- 179
+KKKA+DKQLEFLLGQTERYS+MLAENLV+ +K Q +P + I+ K +DE AE+
Sbjct: 134 EKKKKAMDKQLEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLTIESK-SDEERAEQI 192
Query: 180 -PGVQSKEADEDDAEQHSGFEPQLDAADIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 238
P + S E SG P+LD
Sbjct: 193 PPEINSSAGLE------SG-SPELDE-----DYDLKSEDETEDDEDTIEEDEKHFTKRER 240
Query: 239 XXXXXXXXXXTDIPLQELLKRYAVDKVGRESSAEMGE----------------DEAEPTV 282
D+P++ELL+RY +V RE+S E DE + +
Sbjct: 241 QEELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNL 300
Query: 283 VEEGHVQGNGNDLLAGSKLDTSGS-LVRRCDEINGGLSISENHLLDIETSQVRDTSKKSG 341
G G + LA S+ +T G+ VRR ++ G L+ISE H D+E + K
Sbjct: 301 ASVGQDHGEDKNNLAASE-ETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTASVK--- 356
Query: 342 ASTQKQALYDFSDEQEDGDFVVATGXXXXXXXXXXXXXXXXXXDSNNYIDEIALLQKESE 401
S ++ YDF+DEQED DFV+A G D+ ++++EIALLQKESE
Sbjct: 357 -SRKEDHTYDFNDEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKESE 415
Query: 402 IPVEELLARYRKDMKINKIXXXXXXXXXXXXXXXXXXPAHEDGELKLENDFMDGNVDPGA 461
+P+E LLARY++D I + E + + D D NVD
Sbjct: 416 MPIEVLLARYKEDFGGKDISEDESESSFAVSEDSIV----DSDENRQQADLDDDNVDLTE 471
Query: 462 SQLVMLPLTXXXXXXXXXXXXXXXX-XXNRIXXXXXXXXXXQPTGITFSTTQVRTKFPFL 520
+L P + ++I QPTG T+STT+VRTK PFL
Sbjct: 472 CKLDPEPCSENVEGTFHEVAEDNDKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFL 531
Query: 521 LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIV 580
LK LREYQHIGLDWLVTMYEK+LNGILADEMGLGKTIMTIA+LAHLAC+KGIWGPHLIV
Sbjct: 532 LKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIV 591
Query: 581 VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSK 640
VPTSVMLNWETEFLKWCPAFKILTYFGSAKERK KRQGW+K NSFHVCITTYRL+IQDSK
Sbjct: 592 VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSK 651
Query: 641 VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM 700
+FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM
Sbjct: 652 MFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM 711
Query: 701 PHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQ 760
PH+FQSHQEFKDWFCNPI+GMVEGQEK+NKEV+DRLHNVLRPF+LRRLKRDVEKQLP K
Sbjct: 712 PHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKH 771
Query: 761 EHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIV 820
EHVI+CRLSKRQRNLYEDFIAS+ETQATL S +FFGMIS+IMQLRKVCNHPDLFEGRPIV
Sbjct: 772 EHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGRPIV 831
Query: 821 SSFDMSGIDXXXXXXXXXXXXXXXXXTADLKGLGLLFTNLDFSMNSWESDELNAIATPAS 880
SSFDM+GID DL+ LG LFT+LDFSM SWE DE+ AI+TP+
Sbjct: 832 SSFDMAGIDVQLSSTICSLLLESPFSKVDLEALGFLFTHLDFSMTSWEGDEIKAISTPSE 891
Query: 881 LIKERADL-NNLEEVGPFCTHRKRLNGTSIFXXXXXXXXXXXXXXXQDRASSVAWWNSLR 939
LIK+R +L ++LE + +RK L GT+IF +DRA+++AWWNSLR
Sbjct: 892 LIKQRVNLKDDLEAIPLSPKNRKNLQGTNIFEEIRKAVFEERIQESKDRAAAIAWWNSLR 951
Query: 940 CQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVES 999
CQ+KP YSTSLR LLT+K P+ D+ K SY+YSS LADIVLSP+ERFQ+MI LVE+
Sbjct: 952 CQRKPTYSTSLRTLLTIKGPLDDL---KANCSSYMYSSILADIVLSPIERFQKMIELVEA 1008
Query: 1000 FMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRR 1059
F FAIPAAR P+P CWCSKS + VFL P+YKEK +++LSPLL PIRPAIVRRQVYFPDRR
Sbjct: 1009 FTFAIPAARVPSPTCWCSKSDSPVFLSPSYKEKVTDLLSPLLSPIRPAIVRRQVYFPDRR 1068
Query: 1060 LIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPE 1119
LIQFDCGKLQELA+LLRKLK GHRALIFTQMTKMLD+LE FI+LYGYTYMRLDGST PE
Sbjct: 1069 LIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPE 1128
Query: 1120 ERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG 1179
ERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG
Sbjct: 1129 ERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIG 1188
Query: 1180 QTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTL 1239
QTREVHIYRLISESTIEENILKKANQKR LD+LVIQ+G YNTEFFKKLDPMELFSGH+ L
Sbjct: 1189 QTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSGHKAL 1248
Query: 1240 PMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMALKRAEQEEAVDNQEFTEEAVG 1299
K +KE + + G ++ LSNADVEAALK EDEADYMALKR EQEEAVDNQEFTEE V
Sbjct: 1249 TTKD-EKETSKHCGADIPLSNADVEAALKQAEDEADYMALKRVEQEEAVDNQEFTEEPVE 1307
Query: 1300 RPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERA-LTFAAKEDDVDMLA 1358
RPEDDELV ED ++ DEP DQG M L +D ++ERA +T +++EDD D+L
Sbjct: 1308 RPEDDELVNEDDIKADEPADQGLVAAGPAKEEMSLLHSDIRDERAVITTSSQEDDTDVLD 1367
Query: 1359 DVKQMXXXXXXXGEAISSFENQLRPIDRYAIRFLELWDPIIDKTAVESEVKFEEREWELD 1418
DVKQM G+AISSFENQLRPIDRYAIRFLELWDPII + A+E+E FEE+EWELD
Sbjct: 1368 DVKQMAAAAADAGQAISSFENQLRPIDRYAIRFLELWDPIIVEAAMENEAGFEEKEWELD 1427
Query: 1419 RIEKYKXXXXXXXXXXXXPLVYERWDADFATEAYRQQV-ALAQHQLMXXXXXXXXXXXXX 1477
IEKYK PLVYE+WDADFATEAYRQQV LAQHQLM
Sbjct: 1428 HIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREAA 1487
Query: 1478 XXG---ILDXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSESKAVKEEPSVEPMSIDD--D 1532
+ L +ESK VK +E + DD +
Sbjct: 1488 EVAEMVLTQNESAHVLKPKKKKKAKKAKYKSLKKGSLAAESKHVKSVVKIEDSTDDDNEE 1547
Query: 1533 FYDEDATFSDAMSPPSTSQKKRKKAELALYDDEEREXXXXXXXXXXXXXXPVRSPDSDSK 1592
F ++ SD ++P S K KK +L + DEE+ P+SD K
Sbjct: 1548 FGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKHKKSL------PNSDIK 1601
Query: 1593 LSRKRH--DGSTELKTCESIFIDLEQKSASRSKMGGKISITAMPVKRVLMIKPEKLKKGN 1650
+ D K +S+ +D E K +R K GK IT+MP+KRVLMIKPEKLKKGN
Sbjct: 1602 YKQTSALLDELEPSKPSDSMVVDNELKLTNRGKTVGKKFITSMPIKRVLMIKPEKLKKGN 1661
Query: 1651 VWSRDCVPSPDVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCE 1710
+WSRDCVPSPD WLPQEDAILCA+VHEYGPNW+ VS LYGMTA G YRGRYRHP +CCE
Sbjct: 1662 LWSRDCVPSPDSWLPQEDAILCAMVHEYGPNWNFVSGTLYGMTAGGAYRGRYRHPAYCCE 1721
Query: 1711 RFRELIQRYILSVPDNSINEKTSNVGSGKALLKVTEDNVRTLLNVAAEQEDNELLLQKHF 1770
R+RELIQR+ILS D+++NEK N GSGKALLKVTE+N+RTLLNVAAEQ D E+LLQKHF
Sbjct: 1722 RYRELIQRHILSASDSAVNEKNLNTGSGKALLKVTEENIRTLLNVAAEQPDTEMLLQKHF 1781
Query: 1771 TALLSSVWRMKSRMGCRQNFSSSRNGLYLGGSFFSSVTQTSCKSTREPARRVKFTNLGQS 1830
+ LLSS+WR +R G Q S N F SV T R+P + +K T+L S
Sbjct: 1782 SCLLSSIWRTSTRTGNDQMLSL--NSPIFNRQFMGSVNHTQ-DLARKPWQGMKVTSL--S 1836
Query: 1831 SKLLSAALHDANSRQQDDKVSNFDRREDGPVIEQ-LDLTLEFQRELVDSTISFPPRVNLS 1889
KLL +AL D+ Q D+ +S +E P+ + L+LTLEF R DS FPP ++LS
Sbjct: 1837 RKLLESALQDSGPSQPDNTISRSRLQETQPINKLGLELTLEFPRGNDDSLNQFPPMISLS 1896
Query: 1890 VYGSDLETSVNKSTRENHHLKDSQVA-ENRFRDAARACIEDSLGWASSAFPANDAKLRSV 1948
+ GSD VN+ E+ LK S+VA ENR+R+AA ACIEDS GWAS+ FPAND K R+
Sbjct: 1897 IDGSDSLNYVNEPPGEDV-LKGSRVAAENRYRNAANACIEDSFGWASNTFPANDLKSRTG 1955
Query: 1949 PKSQSLGKHKLSLSDSVKCPKSKLRKTSMEHSE 1981
K+QSLGKHKLS SDS K KSK RK E E
Sbjct: 1956 TKAQSLGKHKLSASDSAKSTKSKHRKLLAEQLE 1988
|
|
| UNIPROTKB|Q6ZRS2 SRCAP "Helicase SRCAP" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BC33 LOC788113 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RG74 SRCAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|1565642 Srcap "Snf2-related CREBBP activator protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0267638 DDB_G0267638 "CHR group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0020306 dom "domino" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00007027 ssl-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000041040 AN9077 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC11E3.01c swr1 "SNF2 family helicase Swr1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2062 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-101 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 6e-84 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 6e-62 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 8e-49 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 2e-40 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-31 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-30 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 8e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 6e-24 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-23 | |
| smart00573 | 73 | smart00573, HSA, domain in helicases and associate | 1e-19 | |
| pfam07529 | 73 | pfam07529, HSA, HSA | 2e-14 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 9e-07 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 5e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 0.002 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 0.002 | |
| pfam04889 | 241 | pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont | 0.004 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 328 bits (842), Expect = e-101
Identities = 129/301 (42%), Positives = 183/301 (60%), Gaps = 14/301 (4%)
Query: 528 YQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLA-HLACEKGIWGPHLIVVPTSVM 586
YQ G++WL+++ L GILADEMGLGKT+ TIA+LA +L K GP L+V P S +
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 587 LNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNS-FHVCITTYRLII---QDSKVF 642
NW EF KW PA +++ Y G +ER RQ K + V ITTY ++ + +
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 643 KRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH 702
+ +W ++LDEAH +KN KS+ ++ L ++ R+LLTGTP+QN+L ELW+L++FL P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 703 IFQSHQEFKDWFCNPI---SGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMK 759
F S + F++WF PI + + KE ++RLH +L+PF+LRR K DVEK LP K
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEKSLPPK 240
Query: 760 QEHVIYCRLSKRQRNLYEDF------IASSETQATLASANFFGMISVIMQLRKVCNHPDL 813
EHV+YC LS QR LY+ S + + ++++IMQLRK+CNHP L
Sbjct: 241 TEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICNHPYL 300
Query: 814 F 814
F
Sbjct: 301 F 301
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214727 smart00573, HSA, domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
| >gnl|CDD|219455 pfam07529, HSA, HSA | Back alignment and domain information |
|---|
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2062 | |||
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.93 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.93 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.93 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.88 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.82 | |
| PTZ00110 | 545 | helicase; Provisional | 99.82 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.82 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.82 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.8 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.8 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.8 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.79 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.79 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.78 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.78 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.78 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.78 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.77 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.75 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.75 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.72 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.71 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.71 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.7 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.69 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.68 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.66 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.64 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.63 | |
| smart00573 | 73 | HSA domain in helicases and associated with SANT d | 99.61 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.6 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.6 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.6 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.59 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.58 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.58 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.57 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.56 | |
| PF07529 | 73 | HSA: HSA; InterPro: IPR006562 This domain of unkno | 99.51 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.5 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.47 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.43 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.43 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.42 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.41 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.41 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.4 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.4 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.39 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.38 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.34 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.33 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.32 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.32 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.3 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.3 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.28 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.27 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.26 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.26 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.26 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.25 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.24 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.23 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.21 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.21 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.19 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.17 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.16 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.15 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.14 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.14 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.14 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.11 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.1 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.1 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.09 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.08 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.06 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.06 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.01 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.01 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.98 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.96 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.95 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 98.88 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.8 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.79 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.79 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.73 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 98.72 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 98.71 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.7 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 98.69 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.67 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.63 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.63 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.62 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.59 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.56 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.56 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 98.56 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.54 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.53 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 98.46 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 98.42 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.31 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 98.3 | |
| KOG0048 | 238 | consensus Transcription factor, Myb superfamily [T | 98.27 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.22 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 98.16 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 98.14 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.13 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 98.11 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.09 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.06 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 98.04 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 98.01 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 98.01 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.0 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.0 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 97.99 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 97.98 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.79 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.73 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.73 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.63 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.54 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.53 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.52 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 97.47 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 97.46 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 97.43 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 97.35 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 97.29 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 97.24 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 97.14 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.14 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.13 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 97.07 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.96 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 96.93 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 96.9 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.87 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.86 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 96.86 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 96.8 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 96.67 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 96.63 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.25 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 96.19 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.82 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.76 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.75 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 95.61 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 95.14 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 94.99 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 94.9 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 94.89 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 94.67 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.55 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 94.53 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 94.41 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 94.39 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 94.34 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 94.28 | |
| KOG0051 | 607 | consensus RNA polymerase I termination factor, Myb | 94.23 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 94.21 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 94.01 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 93.94 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 93.23 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 93.1 | |
| KOG0050 | 617 | consensus mRNA splicing protein CDC5 (Myb superfam | 92.89 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 92.87 | |
| PF13837 | 90 | Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; | 92.86 | |
| COG5147 | 512 | REB1 Myb superfamily proteins, including transcrip | 92.86 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 92.78 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 92.75 | |
| KOG0699 | 542 | consensus Serine/threonine protein phosphatase [Si | 92.63 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.49 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 92.49 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 92.01 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 91.81 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 91.74 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 91.66 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 91.53 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 91.47 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 91.44 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 91.43 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 91.38 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 91.1 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 91.08 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 91.04 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 90.68 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 90.64 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 90.44 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 90.35 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 89.78 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 89.36 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 89.32 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 89.11 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 88.98 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 88.85 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 88.62 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 88.53 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 88.51 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 88.51 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 88.4 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 88.3 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 87.83 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 87.8 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 87.71 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 87.33 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 87.22 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 87.1 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 86.85 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 86.8 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 86.76 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 86.6 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 86.34 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 85.91 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 85.43 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 85.16 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 85.14 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 84.79 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 84.56 | |
| PRK08181 | 269 | transposase; Validated | 84.09 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 84.03 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 84.03 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 83.88 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 83.76 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 83.73 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 83.38 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 83.32 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 83.04 | |
| PRK06526 | 254 | transposase; Provisional | 83.04 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 82.58 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 82.3 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 82.3 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 82.24 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 82.21 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 82.17 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 82.1 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 81.83 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 81.71 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 81.67 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 80.95 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 80.95 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 80.86 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 80.72 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 80.64 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 80.14 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 80.12 |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-203 Score=1852.85 Aligned_cols=1203 Identities=42% Similarity=0.627 Sum_probs=883.7
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHhhhhhHHhchhhhhHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 000139 94 VNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEAD 173 (2062)
Q Consensus 94 ~~iak~v~~FW~~iek~v~~K~Q~~leekrKkALd~~L~fivgqTEkys~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (2062)
...|+++..||.+.++++.||+|.+..+||+++|++|+.++++++.+|+.|+...|..+..+............++.
T Consensus 192 ~~~a~d~~~f~ts~eevd~fk~qgr~~~kr~akl~~h~l~~~a~~~k~qr~s~qrl~k~~ep~~~k~~~~~~ll~~~--- 268 (1958)
T KOG0391|consen 192 QALAGDLVAFATSTEEVDLFKRQGRMPSKRMAKLSKHPLTPQAAQLKGQRQSQQRLDKSTEPPVQKAASLHTLLPQL--- 268 (1958)
T ss_pred HHHhhhhhccccCcchhhhhhhccccccchhhhhhcCcchHHHHHHhhhHHHHhhcCCCCCchhccccccccccccc---
Confidence 56789999999999999999999999999999999999999999999999999999876655433111111101000
Q ss_pred cCCCCCCCcCccccccchhhccCCCCCCCCccCCCccccCCCCCCCccchhchHHHHhhhc--hHHHHHHHHHhhcCCCC
Q 000139 174 ENGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYDVHSEDESEDDEHTIEEDEALIT--EEERKEELEALHNETDI 251 (2062)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ddef~~~~~ee~eDDEeTIEeeE~~~~--~~d~~~ELe~L~~E~El 251 (2062)
.+. .......-.++.+..|-++.+.. .+++++|+.+.+.+. .+-.+.+++.|+..+++
T Consensus 269 -~~~------------------~pp~~~t~~~d~ia~f~aqqd~~-~h~d~qIeie~~~e~~~~e~~k~~i~~lk~v~~~ 328 (1958)
T KOG0391|consen 269 -PGR------------------LPPAGVTTAADSIALFFAQQDQV-VHADTQIEIEVKTEQPNVEIPKPPISQLKIVPSQ 328 (1958)
T ss_pred -ccc------------------CCCCCCCccccchhhhhhcchhh-hhhhhhhhhhhhhccccccccccchhhccccccc
Confidence 000 11112234456677888887655 788999999988874 46688999999999999
Q ss_pred CHHHHHhhhcccccCCCCcccCCCCCCCCcccccccccCCCCCcccCCccCCCCcccccccccCCCCccccccccccccc
Q 000139 252 PLQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETS 331 (2062)
Q Consensus 252 PLEELL~~y~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~e~d~~~~~~~~~~e~~~~~~~~e~~~~~~~~~ 331 (2062)
|...+|.-...+....++.+. . .+++.-+.--++..+-.+. ....
T Consensus 329 p~q~~lhv~~pa~e~gps~~r-------~------------------------~p~sh~sfa~~~v~e~~n~----~~pg 373 (1958)
T KOG0391|consen 329 PAQLALHVPTPASEPGPSPAR-------S------------------------SPVSHPSFATNKVLEPVNS----RTPG 373 (1958)
T ss_pred hHHHhhcCCCccccCCCCchh-------c------------------------Cccccchhhhhcccccccc----cCcc
Confidence 999998665543211111100 0 0110000000000000000 0000
Q ss_pred ccccccccCCCchhhhccccCCCCccCccccccCCCCCCCccchHHHHHHhhhcCCChHHHHHHhhccCCCCHHHHHHHh
Q 000139 332 QVRDTSKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARY 411 (2062)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~deeED~df~~~e~e~~DdE~Ti~eEE~~e~~~~~d~~~E~~~L~~e~~m~ieeLla~~ 411 (2062)
.....+.++.... .+.-.+.++..|+++...+++..+.+++++..|... .++|++.++.++.++.+++...|...|
T Consensus 374 vv~s~p~ps~~~~--rn~~~~h~s~~de~seq~~ee~~~~~~~~~~~e~~~--~evd~l~~lse~drddels~y~le~ey 449 (1958)
T KOG0391|consen 374 VVASAPTPSQSPA--RNATSSHDSSQDELSEQITEENQVHQRIAELREAGL--WEVDRLPKLSEADRDDELSDYLLEEEY 449 (1958)
T ss_pred eeeccCChhhccc--cccccccccccchhhhhhHHHHHHhHhHHHhhhcch--hhhhhhhhhhccccccchhhhcccHHH
Confidence 0000011111101 111122344455555554444444444443333322 368899999999999999999998888
Q ss_pred hccccccc-------------------------CCccccccccccc----CCCCCCCCccccccccccccCCCCC-----
Q 000139 412 RKDMKINK-------------------------ISEDESDYASALS----DDLSDSPAHEDGELKLENDFMDGNV----- 457 (2062)
Q Consensus 412 ~~~~~~~~-------------------------~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 457 (2062)
-....... ++...++.++..+ ++.-||+++..++++.+..+.|...
T Consensus 450 ~~Ay~~~~as~e~~~~de~~e~kqlkE~~G~~eed~~~se~kss~s~s~ed~s~dsese~seeee~s~ss~d~t~e~~~s 529 (1958)
T KOG0391|consen 450 WMAYDVAAASKEVRTVDEHHEEKQLKEERGKKEEDSGMSERKSSASISLEDDSVDSESETSEEEEASESSVDHTTELSNS 529 (1958)
T ss_pred hhccCccccccccchHHHHHHHHhhhhhcCCcccccCcccccccccceeeeccccccCcchhhhccCccccccchhhccc
Confidence 66432110 0000000000000 0000111111111111111111000
Q ss_pred -----CC--CCccccC----CcccccccCCCccc--------ccccchhhhhHHHHHHHhhcCCCCCCccccccccccCC
Q 000139 458 -----DP--GASQLVM----LPLTEKQEGGSEKK--------SEEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFP 518 (2062)
Q Consensus 458 -----~~--~~~~~~~----~~~~~~~e~~~~~~--------~~~~~~~~~~i~~~aa~a~s~qP~g~~~~tt~vkt~vP 518 (2062)
.+ +.+.... .......+...+.. ..-+....++|+++++.|++++|+|+++.++.|++++|
T Consensus 530 a~~ae~~~~Dg~~~led~~~~yv~s~sed~dE~~~d~~~~~~g~~~~~~~keiadIaavae~~qpKgytl~tTqVktpvP 609 (1958)
T KOG0391|consen 530 AKEAELPLLDGMKLLEDAFLGYVTSGSEDADECPGDRESAERGNIGKPNAKEIADIAAVAEAIQPKGYTLVTTQVKTPVP 609 (1958)
T ss_pred ccccccccccchhhhcccccceecccccchhhcccccCCcccCCcCCCchhhhhhHHHHHHhhCccceeeeeeeeccCch
Confidence 00 0000000 00000000000000 01122345689999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCC
Q 000139 519 FLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCP 598 (2062)
Q Consensus 519 ~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw~P 598 (2062)
++|+|.||+||++||+||+++|++++|||||||||||||||+|+|++||+|.+|+|||||||||+|+|.||++||+||||
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCChhhHHhhhhccCCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHHHHHcccCceEE
Q 000139 599 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 678 (2062)
Q Consensus 599 ~lkVl~y~Gs~kerk~~r~gw~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~qaL~~L~a~~RL 678 (2062)
+|+|++|+|+.++|+.+|+||.+++.||||||||.++.+|...|++.+|.|+||||||+|||++|++|++|++|++.+||
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRL 769 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRL 769 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhhhhhhHhhcCCC
Q 000139 679 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 758 (2062)
Q Consensus 679 LLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRRtK~DVekqLP~ 758 (2062)
|||||||||+|||||+|||||||++|.+|..|+.||++|++||+++...++...|.|||+|||||+|||+|+||+||||+
T Consensus 770 LLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpk 849 (1958)
T KOG0391|consen 770 LLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPK 849 (1958)
T ss_pred eecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccccccccccccc--
Q 000139 759 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSV-- 836 (2062)
Q Consensus 759 K~EhVV~c~LSkrQR~LYdd~is~~~t~~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~~~~~~l~s~~-- 836 (2062)
||||||+|+||++||+||++||++..|+++|++|||++++|+|||||||||||+||++|++.++|...++.+..++.+
T Consensus 850 KyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r 929 (1958)
T KOG0391|consen 850 KYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITR 929 (1958)
T ss_pred hhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776432
Q ss_pred --cccCCCCCC-------------cch--------------hhcccc------------ccccccccccCccchhh----
Q 000139 837 --CSMLSPSPL-------------STA--------------DLKGLG------------LLFTNLDFSMNSWESDE---- 871 (2062)
Q Consensus 837 --~~~l~~~~~-------------~~~--------------dl~~l~------------ll~~~le~~~~~~e~~e---- 871 (2062)
..++...+. ..+ ++..+. ..|.......+.+...+
T Consensus 930 ~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~ 1009 (1958)
T KOG0391|consen 930 HLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASAS 1009 (1958)
T ss_pred hhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCcccccccc
Confidence 222222221 000 011111 11222222222222211
Q ss_pred ---------------hhhhcCchhHHHHhhhcccc---------------c--------c----cCCcc-----------
Q 000139 872 ---------------LNAIATPASLIKERADLNNL---------------E--------E----VGPFC----------- 898 (2062)
Q Consensus 872 ---------------~~~l~tp~~li~~~~~l~~~---------------~--------~----~~p~~----------- 898 (2062)
+..+..|..++++......+ . . ..+..
T Consensus 1010 ~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~ 1089 (1958)
T KOG0391|consen 1010 SVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRP 1089 (1958)
T ss_pred chhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCC
Confidence 11111122222211100000 0 0 00000
Q ss_pred -------------ccccccCCchHH------HHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCc
Q 000139 899 -------------THRKRLNGTSIF------EKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHP 959 (2062)
Q Consensus 899 -------------~~~~~~~gt~~~------e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p 959 (2062)
.......|+... ..+...+.++|.+....++..+...+ .|+|+..+.+++.+..+
T Consensus 1090 pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~------APvyg~e~l~~c~lp~e 1163 (1958)
T KOG0391|consen 1090 PVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN------APVYGRELLRICALPSE 1163 (1958)
T ss_pred CCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc------Ccccchhhhhhhccchh
Confidence 000011111110 11233567778888888887776655 89999999888877654
Q ss_pred chhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCcccccc-chhhhhccccC
Q 000139 960 VCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQP-TYKEKCSEVLS 1038 (2062)
Q Consensus 960 ~~~~~~~~~~~~~~~~ss~L~~~v~s~~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~-~~~~~~~~~l~ 1038 (2062)
..... .+.........+..+++.+..+|++|.|++|.+.++++.++..+++..+.... .+.......+.
T Consensus 1164 ~i~p~----------~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~ 1233 (1958)
T KOG0391|consen 1164 GIVPW----------RSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELA 1233 (1958)
T ss_pred hhccc----------cccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhc
Confidence 32211 12233344556677788899999999999999999999999888744333222 34445556677
Q ss_pred CCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH
Q 000139 1039 PLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP 1118 (2062)
Q Consensus 1039 ~~l~~l~~~~~~~~~~fPd~rLiq~dSGKLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~ 1118 (2062)
+++.+ ....+.+.++||++||||||||||++|+.||++|+.+||||||||||++|||+|+.||++|||.|+||||+|++
T Consensus 1234 p~~~~-~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~v 1312 (1958)
T KOG0391|consen 1234 PYFQQ-RQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSV 1312 (1958)
T ss_pred cccch-hhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccH
Confidence 88877 48888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHH
Q 000139 1119 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1198 (2062)
Q Consensus 1119 eqRq~lmerFN~D~~IfVfLLSTrAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~ 1198 (2062)
+|||.+|++||.|++|||||||||+||+|||||+||||||||+||||+||+|||||||||||||+|||||||+++|||||
T Consensus 1313 EqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEen 1392 (1958)
T KOG0391|consen 1313 EQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEEN 1392 (1958)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCChhhhhcCCCCCchhhhhHHHhhhcCCCccCChhh-HHHHHHhhhchHHHH
Q 000139 1199 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNAD-VEAALKCVEDEADYM 1277 (2062)
Q Consensus 1199 Ilkka~qKr~L~~~vIq~g~ft~~~fk~~di~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~al~~aEde~d~~ 1277 (2062)
||+++++||+|++++||||+|+++||++.+++|||++..+........ .......+++.. +|.||+.||||+|+.
T Consensus 1393 iLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~----~ad~~v~~see~~le~alA~aede~dV~ 1468 (1958)
T KOG0391|consen 1393 ILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPA----KADEFVVASEEPSLEVALAPAEDEEDVE 1468 (1958)
T ss_pred HHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCc----cchhhhhhcCcchHHHHhhhhcchHHHH
Confidence 999999999999999999999999999999999999854322111111 011122334444 999999999999999
Q ss_pred HHHHHhhHHhhhcccccccccCCCCCcccccccccCCCCCCCCCCcccccCCCCcccCCCCCchhhhhhhhcccchhhHH
Q 000139 1278 ALKRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERALTFAAKEDDVDML 1357 (2062)
Q Consensus 1278 a~~~~~~e~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 1357 (2062)
|++.|++|++.++++|+|..... .+.+.+++
T Consensus 1469 Aak~a~~e~e~d~~ef~E~~~~p-----------------------------------~s~~~ee~-------------- 1499 (1958)
T KOG0391|consen 1469 AAKSAEAEEEDDQAEFDEGVDSP-----------------------------------NSNCQEEP-------------- 1499 (1958)
T ss_pred HHHHHHHHHHhhhhhhhcccCCC-----------------------------------CCCcccch--------------
Confidence 99999999999999999974110 00112221
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhhHHhhhhhhhcccc-cchH-HHHHHHHHhHhHHHHHHHHHhHHHHHhccCCCC
Q 000139 1358 ADVKQMAAAAAAAGEAISSFENQLRPIDRYAIRFLELWDPI-IDKT-AVESEVKFEEREWELDRIEKYKEEMEAEIDDDE 1435 (2062)
Q Consensus 1358 ~~~~~~~~~~~~~~~~~~~~~~ql~pierya~~~le~~~~~-~~~~-~~~~~~~~~~~~we~~~l~~~ke~~~~~~~~~~ 1435 (2062)
.|.+++..||+||||||||||||||++++. +.++ ..+.+|..++|+|+--+|+.++-.. .+|++
T Consensus 1500 -----------~a~ee~adl~eqltPIe~YainfLe~~~~~e~Eee~~eeeav~~a~rd~d~~nl~~~rl~~---eeee~ 1565 (1958)
T KOG0391|consen 1500 -----------SADEELADLMEQLTPIERYAINFLELFYTSEFEEERNEEEAVMTAVRDEDFWNLKTLRLRL---EEEED 1565 (1958)
T ss_pred -----------hhHHHHHHHHhccCcHHHHHHHHHHhccchhhhhhhhHHHHHHHHHhHHhhhcchhhccch---hhhcc
Confidence 123456679999999999999999998877 4333 3457899999999999998774322 25566
Q ss_pred Ccceeee
Q 000139 1436 EPLVYER 1442 (2062)
Q Consensus 1436 ~~l~y~~ 1442 (2062)
++|+|+|
T Consensus 1566 ell~~~~ 1572 (1958)
T KOG0391|consen 1566 ELLGYTR 1572 (1958)
T ss_pred cccccCc
Confidence 8999998
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >smart00573 HSA domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG0048 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A | Back alignment and domain information |
|---|
| >COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2062 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 4e-56 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 3e-38 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-41 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 2e-21 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 3e-38 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 1e-20 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 7e-29 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 2e-26 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 2e-21 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-112
Identities = 120/362 (33%), Positives = 186/362 (51%), Gaps = 32/362 (8%)
Query: 471 EKQEGGSEKKSEEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFPFLLKFPLREYQH 530
E + E+ + +NR S+ T ++ + PF+ LR++Q
Sbjct: 183 ENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQL 242
Query: 531 IGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 590
G++W+ ++ K NGILADEMGLGKT+ T+A ++ L + GPH+IVVP S M W
Sbjct: 243 TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWL 302
Query: 591 TEFLKWCPAFKILTYFGSAKERKFKRQ---------GWLKPNSFHVCITTYRLIIQDSKV 641
F KW P + Y G+ K R R+ K F+V +TTY I++D
Sbjct: 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE 362
Query: 642 FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMP 701
KW+++ +DEAH +KN +S +++L +F R+L+TGTPLQN++ EL +L++FLMP
Sbjct: 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMP 422
Query: 702 HIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQE 761
F QE Q++ +E + LH ++PFILRRLK+DVEK LP K E
Sbjct: 423 GRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTE 472
Query: 762 HVIYCRLSKRQRNLYE-------DFIASSETQATLASANFFGMISVIMQLRKVCNHPDLF 814
++ LS Q Y+ + + A F +++++ +L+K NHP LF
Sbjct: 473 RILRVELSDVQTEYYKNILTKNYSALTAG------AKGGHFSLLNIMNELKKASNHPYLF 526
Query: 815 EG 816
+
Sbjct: 527 DN 528
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2062 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.95 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.95 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.94 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.93 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.93 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.93 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.92 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.92 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.91 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.9 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.9 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.9 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.89 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.87 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.86 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.85 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.85 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.84 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.84 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.82 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.82 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.8 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.79 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.77 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.77 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.77 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.73 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.73 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.72 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.71 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.65 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.63 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.61 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.61 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.61 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.57 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.56 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.52 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.52 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.51 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.51 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.51 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.51 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.22 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.46 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.46 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.46 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.44 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.44 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.43 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.42 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.42 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.42 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.41 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.39 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.38 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.37 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.36 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.35 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.35 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.33 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.32 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.31 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.31 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.28 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.26 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.23 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.22 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.22 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.19 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.18 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.01 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.92 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 98.88 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 98.66 | |
| 1w0t_A | 53 | Telomeric repeat binding factor 1; telomere, DNA-b | 98.65 | |
| 3sjm_A | 64 | Telomeric repeat-binding factor 2; human telomeric | 98.64 | |
| 1guu_A | 52 | C-MYB, MYB proto-oncogene protein; transcription, | 98.63 | |
| 1gvd_A | 52 | MYB proto-oncogene protein; transcription, transcr | 98.59 | |
| 2din_A | 66 | Cell division cycle 5-like protein; MYB_DNA-bindin | 98.58 | |
| 2d9a_A | 60 | B-MYB, MYB-related protein B; DNA binding, structu | 98.51 | |
| 1ity_A | 69 | TRF1; helix-turn-helix, telomeres, DNA binding, MY | 98.5 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 98.48 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 98.46 | |
| 2dim_A | 70 | Cell division cycle 5-like protein; MYB_DNA-bindin | 98.39 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.36 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.35 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 98.35 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 98.33 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 98.29 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 98.27 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.26 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 98.19 | |
| 2llk_A | 73 | Cyclin-D-binding MYB-like transcription factor 1; | 98.19 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 98.18 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 98.12 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 98.05 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 98.02 | |
| 2ckx_A | 83 | NGTRF1, telomere binding protein TBP1; nuclear pro | 98.01 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 97.98 | |
| 2ltp_A | 89 | Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s | 97.21 | |
| 2roh_A | 122 | RTBP1, telomere binding protein-1; plant, nucleus, | 97.95 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 97.89 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 97.87 | |
| 2juh_A | 121 | Telomere binding protein TBP1; helix, nucleus, nuc | 97.85 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 97.78 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.77 | |
| 2cqr_A | 73 | RSGI RUH-043, DNAJ homolog subfamily C member 1; m | 97.73 | |
| 2aje_A | 105 | Telomere repeat-binding protein; DNA-binding, Trp, | 97.69 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 97.68 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 97.61 | |
| 2cjj_A | 93 | Radialis; plant development, DNA-binding protein, | 97.57 | |
| 1x58_A | 62 | Hypothetical protein 4930532D21RIK; MUS musculus a | 97.23 | |
| 2eqr_A | 61 | N-COR1, N-COR, nuclear receptor corepressor 1; SAN | 97.18 | |
| 1ign_A | 246 | Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, | 96.81 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.77 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.61 | |
| 2cqq_A | 72 | RSGI RUH-037, DNAJ homolog subfamily C member 1; m | 96.47 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.38 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.06 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.02 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.72 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 95.69 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.51 | |
| 1fex_A | 59 | TRF2-interacting telomeric RAP1 protein; helix tur | 95.02 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 94.84 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.19 | |
| 1wgx_A | 73 | KIAA1903 protein; MYB DNA-binding domain, human cD | 94.13 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 93.74 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 93.66 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.14 | |
| 2iw5_B | 235 | Protein corest, REST corepressor 1; oxidoreductase | 92.94 | |
| 2ebi_A | 86 | DNA binding protein GT-1; DNA-binding domain, phos | 92.82 | |
| 3hm5_A | 93 | DNA methyltransferase 1-associated protein 1; DNA | 92.02 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 91.68 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 91.38 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.17 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 90.16 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 89.95 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 87.93 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 87.62 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 86.34 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 83.5 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 82.86 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 82.46 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 82.42 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 82.28 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 81.63 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 81.53 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 80.94 | |
| 1ug2_A | 95 | 2610100B20RIK gene product; hypothetical protein, | 80.38 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 80.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 80.26 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 80.01 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-80 Score=821.30 Aligned_cols=473 Identities=41% Similarity=0.717 Sum_probs=390.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000139 517 FPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 596 (2062)
Q Consensus 517 vP~lLk~~LRpYQ~~GL~WLv~l~~~~~gGILADEMGLGKTIQaIALLa~L~~~~g~~Gp~LIVvPtSLL~QW~~Efkkw 596 (2062)
.|+...++|||||+.||+||+.++.++.||||||+||||||+|+|++|.++....+..+|+|||||.+++.||..||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 45555789999999999999999999999999999999999999999999887778889999999999999999999999
Q ss_pred CCCCeEEEEeCChhhHHhhhhc-c--------CCCCCceEEEEehhhhhhchhhhhccCeeEEEEcCccccCChhhHHHH
Q 000139 597 CPAFKILTYFGSAKERKFKRQG-W--------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 667 (2062)
Q Consensus 597 ~P~lkVl~y~Gs~kerk~~r~g-w--------~k~~~fdVVITSYe~l~~d~~~L~r~~W~lVILDEAH~IKN~~Sk~~q 667 (2062)
+|++++++|+|....+...+.. + .....++|+||||+++.++...|....|++|||||||++||..++.++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~ 388 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYE 388 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHH
Confidence 9999999999998877654321 1 234578999999999999999999999999999999999999999999
Q ss_pred HHHcccCceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhhhhhhh
Q 000139 668 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 747 (2062)
Q Consensus 668 aL~~L~a~~RLLLTGTPLQNsL~ELwSLL~FL~P~iF~s~~eFkewFsnPisg~~eg~~~~n~~~i~rLhkvLrpFmLRR 747 (2062)
++..+++.+||+|||||++|++.|||+||+||+|+.|.....|.- .. ........+.+|+.+|+||++||
T Consensus 389 ~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~--~~--------~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 389 SLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDF--EN--------QDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-----------C--------CTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcc--cc--------cchhHHHHHHHHHHHHhHHHhhh
Confidence 999999999999999999999999999999999999987666641 11 11223456889999999999999
Q ss_pred hhhhHhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH-HHhhhcchhhHHHHHHHHHHHhCCCcccCCCCcccccccc
Q 000139 748 LKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ-ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 826 (2062)
Q Consensus 748 tK~DVekqLP~K~EhVV~c~LSkrQR~LYdd~is~~~t~-~~L~sgn~~silnvLmqLRKvCNHP~Lfe~r~i~S~f~~~ 826 (2062)
+|.+|.+.||++.+++++|+||+.|+.+|..++...... .....+...++++++++||++||||.|+.....
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~------- 531 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE------- 531 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH-------
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH-------
Confidence 999999999999999999999999999999887642211 111234456799999999999999998632100
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHhhhcccccccCCccccccccCC
Q 000139 827 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 906 (2062)
Q Consensus 827 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~le~~~~~~e~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 906 (2062)
. . +..
T Consensus 532 --------~---~------------------------------------------------~~~---------------- 536 (800)
T 3mwy_W 532 --------R---V------------------------------------------------LQK---------------- 536 (800)
T ss_dssp --------H---H------------------------------------------------CCC----------------
T ss_pred --------H---H------------------------------------------------HHh----------------
Confidence 0 0 000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000139 907 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 986 (2062)
Q Consensus 907 t~~~e~l~~~l~eer~~~~~~~~~~~~~~n~~rc~~~p~y~~~L~~ll~~~~p~~~~~~~~~~~~~~~~ss~L~~~v~s~ 986 (2062)
++. ... ..
T Consensus 537 ---------------------------------------~~~---------~~~------------------------~~ 544 (800)
T 3mwy_W 537 ---------------------------------------FGD---------GKM------------------------TR 544 (800)
T ss_dssp ---------------------------------------C-------------C------------------------CS
T ss_pred ---------------------------------------ccc---------ccc------------------------cH
Confidence 000 000 00
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000139 987 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 1066 (2062)
Q Consensus 987 ~erl~~l~~lie~f~~~vp~~~ap~p~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~fPd~rLiq~dSG 1066 (2062)
.... +.+...||
T Consensus 545 ~~~~--------------------------------------------------------------------~~l~~~s~ 556 (800)
T 3mwy_W 545 ENVL--------------------------------------------------------------------RGLIMSSG 556 (800)
T ss_dssp HHHH--------------------------------------------------------------------HHHHHTCH
T ss_pred HHHH--------------------------------------------------------------------HHhhhcCh
Confidence 0000 00112489
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000139 1067 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1145 (2062)
Q Consensus 1067 KLq~L~~LLrkLks~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~-D~~IfVfLLSTrAGG 1145 (2062)
|+..|..+|.+++..|+||||||||+.|+++|+.+|...|+.|++|+|+++..+|+.++++||. +...+|||+||++||
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 557789999999999
Q ss_pred cccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000139 1146 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1221 (2062)
Q Consensus 1146 ~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~ 1221 (2062)
+||||+.||+||+||++|||+.+.||+||||||||+++|+|||||+++||||+|++++.+|+.|.+++|+.|....
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A | Back alignment and structure |
|---|
| >3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A | Back alignment and structure |
|---|
| >1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A | Back alignment and structure |
|---|
| >2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A | Back alignment and structure |
|---|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
| >1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
| >1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* | Back alignment and structure |
|---|
| >2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* | Back alignment and structure |
|---|
| >3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2062 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 2e-52 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 9e-45 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-26 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-12 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-23 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-05 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 9e-16 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 1e-15 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-12 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 3e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 6e-07 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-06 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 2e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 4e-05 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 4e-05 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 4e-04 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 6e-04 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 182 bits (461), Expect = 2e-52
Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 518 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPH 577
P+ +K LR YQ G W+ M + LAD+MGLGKT+ TIA+ + ++ P
Sbjct: 6 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELTPS 64
Query: 578 LIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ 637
L++ P SV+ NWE E K+ P + + + K + + +TTY ++++
Sbjct: 65 LVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL--------EDYDIILTTYAVLLR 116
Query: 638 DSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMH 697
D++ K +WKY+++DEA IKN +++ ++ + SK RI LTGTP++N + +LWS+M
Sbjct: 117 DTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMT 175
Query: 698 FLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD--VEKQ 755
FL P + S+ EFK F PI +K + + L ++ PFILRR K D +
Sbjct: 176 FLNPGLLGSYSEFKSKFATPI-------KKGDNMAKEELKAIISPFILRRTKYDKAIIND 228
Query: 756 LP 757
LP
Sbjct: 229 LP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2062 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.76 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.75 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.75 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.69 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.67 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.67 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.63 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.6 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.6 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.56 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.53 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.39 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.36 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.32 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.31 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.27 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.24 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.22 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.19 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.12 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.02 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.85 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.82 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.7 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.7 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.69 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.67 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 98.66 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.65 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 98.6 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.59 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.59 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.54 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 98.53 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.52 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.5 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.5 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.42 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 98.39 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.36 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.34 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.34 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 98.29 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 98.27 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 98.2 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.1 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 98.0 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.92 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 97.79 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.66 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 97.64 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.63 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 97.57 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 95.95 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 95.4 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 94.55 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.36 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.24 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 90.57 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.09 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 82.64 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 82.57 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 81.5 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.55 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=3.7e-44 Score=431.64 Aligned_cols=173 Identities=36% Similarity=0.634 Sum_probs=163.9
Q ss_pred ccchHHHHHHHHHHhh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEec
Q 000139 1064 DCGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILST 1141 (2062)
Q Consensus 1064 dSGKLq~L~~LLrkLk-s~GhKVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsTs~eqRq~lmerFN~D-~~IfVfLLST 1141 (2062)
.|||+.+|..+|..++ ..|+||||||||+.++++|+.+|...|+.|++|+|+|+..+|+.++++||.+ ...+|||+|+
T Consensus 99 ~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~ 178 (346)
T d1z3ix1 99 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 178 (346)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecc
Confidence 4899999999999885 6689999999999999999999999999999999999999999999999985 4568999999
Q ss_pred cccccccCcccCCEEEEecCCCChhhHHHHHHhhhccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000139 1142 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1221 (2062)
Q Consensus 1142 rAGG~GLNLT~ADtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEE~Ilkka~qKr~L~~~vIq~g~ft~ 1221 (2062)
++||+||||++|++|||||++|||+.+.||+||||||||+++|+||||++.+||||+|++++..|+.|.+.|+++++...
T Consensus 179 ~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~ 258 (346)
T d1z3ix1 179 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVE 258 (346)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCC
T ss_pred hhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred cccccCChhhhhcCC
Q 000139 1222 EFFKKLDPMELFSGH 1236 (2062)
Q Consensus 1222 ~~fk~~di~eLF~~~ 1236 (2062)
..|+..++.+||+..
T Consensus 259 ~~~~~~~l~~lf~~~ 273 (346)
T d1z3ix1 259 RHFSLGELRELFSLN 273 (346)
T ss_dssp CSSCHHHHHHHTCCC
T ss_pred hcCCHHHHHHHhcCC
Confidence 788888899999754
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
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| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
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| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
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| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
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| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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