Citrus Sinensis ID: 000152
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2027 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IDX6 | 3130 | Reticulocyte-binding prot | yes | no | 0.044 | 0.028 | 0.351 | 0.0002 |
| >sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1 | Back alignment and function desciption |
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Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 69/108 (63%), Gaps = 18/108 (16%)
Query: 581 MQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQL--- 637
++ QE++R+ +E+E +R+E+ERL RE++EQ ++ EEE + R EQE+L
Sbjct: 2739 LKRQEQERLQKEEE-----LKRQEQERLE--REKQEQLQK-EEELK----RQEQERLQKE 2786
Query: 638 EATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAE 685
EA ++ E++R+ +EEE +R +E+ R KQ+ L+ EE + +++ E
Sbjct: 2787 EALKRQEQERLQKEEELKR---QEQERLEREKQEQLQKEEELKRQEQE 2831
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Involved in reticulocyte adhesion. Plasmodium falciparum (isolate 3D7) (taxid: 36329) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2027 | ||||||
| 147852611 | 2530 | hypothetical protein VITISV_030961 [Viti | 0.982 | 0.787 | 0.592 | 0.0 | |
| 255565158 | 2452 | hypothetical protein RCOM_1407450 [Ricin | 0.968 | 0.800 | 0.599 | 0.0 | |
| 359480807 | 2394 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.796 | 0.591 | 0.0 | |
| 224096768 | 1828 | predicted protein [Populus trichocarpa] | 0.878 | 0.973 | 0.564 | 0.0 | |
| 449448508 | 2442 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.803 | 0.544 | 0.0 | |
| 449485561 | 2391 | PREDICTED: uncharacterized protein LOC10 | 0.943 | 0.800 | 0.537 | 0.0 | |
| 296082428 | 2129 | unnamed protein product [Vitis vinifera] | 0.838 | 0.798 | 0.504 | 0.0 | |
| 358349430 | 2364 | hypothetical protein MTR_142s1012 [Medic | 0.923 | 0.791 | 0.513 | 0.0 | |
| 356565608 | 2360 | PREDICTED: uncharacterized protein LOC10 | 0.923 | 0.792 | 0.522 | 0.0 | |
| 356514250 | 2345 | PREDICTED: uncharacterized protein LOC10 | 0.922 | 0.797 | 0.524 | 0.0 |
| >gi|147852611|emb|CAN81687.1| hypothetical protein VITISV_030961 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2148 bits (5566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1244/2099 (59%), Positives = 1534/2099 (73%), Gaps = 107/2099 (5%)
Query: 1 MANPGVGNKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGG--GGGGMLVL 58
MAN GVG+KFVSVNLNKSYGQ H H YGSNR R TG GGGGM+VL
Sbjct: 1 MANHGVGSKFVSVNLNKSYGQPPHP---------PHQSSYGSNRTR-TGSHGGGGGMVVL 50
Query: 59 SRPRSSQKAAVPKLSVPPPLNLPSLRKEHERFDSSGSNGGPAGGGVSGAGQRPGSSGTGW 118
SR R+ QK PKLSVPPPLNLPSLRKEHERFDSSG G +GG SG G RP SSG GW
Sbjct: 51 SRSRNMQKIG-PKLSVPPPLNLPSLRKEHERFDSSGLGSGQSGGSGSGNGSRPTSSGMGW 109
Query: 119 TKPGTAV----------------GSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRS 162
TKPGT GS+ + VDQG HSVDG+++G+ GVY+PPS RS
Sbjct: 110 TKPGTVALQEKDGGGDHHLFGRSGSEAQAVXSVDQGLHSVDGVTRGS---GVYMPPSARS 166
Query: 163 GTVGPALSS----FAPAEKASVLRGEDFPSLQAALPAASGSEKKQKDGFSQKQKQGMSQE 218
GT+ P +S+ F EKA VLRGEDFPSLQAALP SG +K KDG +QKQK +S+E
Sbjct: 167 GTLVPPISAASRAFPSVEKAVVLRGEDFPSLQAALPTTSGPAQKPKDGQNQKQKHVLSEE 226
Query: 219 LGNNEQKDGCRFNAVNDGMSPRLQSGQDVVGSRLRENGGINHDTGSARRSEQVRKQEEYF 278
L +NEQ++ + + D M P++Q G+RL N H GS+ ++E RKQ++YF
Sbjct: 227 L-SNEQRESDHLSLLVD-MRPQVQPSHHNDGNRLNANRE-GHGLGSSCKTELTRKQDDYF 283
Query: 279 PGPLPLVRLKPRSDWADDERDTGHGITDRDRDHGFSKSEAYWEGDFDMPRPSVLPHKPAH 338
PGPLPLVRL PRSDWADDERDTGHG T+R RDHGFSK+EAYW+ DFDMPR VLPHKPAH
Sbjct: 284 PGPLPLVRLNPRSDWADDERDTGHGFTERARDHGFSKTEAYWDRDFDMPRSGVLPHKPAH 343
Query: 339 NVFERWGQRDSETGKVSSSEVARVDPFGRDIRAPSREGR---------EGNMWRASSSLQ 389
NVF+RWGQRD+E GKV SSEV ++DP+GRD+R PSR+G EGN WR SS L
Sbjct: 344 NVFDRWGQRDNEAGKVYSSEVPKLDPYGRDVRTPSRDGYVRTPSRDGYEGNSWRTSSPLP 403
Query: 390 KDGFGALDIGDNRNGICERPSSLNREANKET-KFMSSPFRDTVQDDS-----------GR 437
K GF + ++G++R G RPSS+NRE +KE K+ SP + +DD GR
Sbjct: 404 KGGFSSQEVGNDRGGFGVRPSSMNRETSKENNKYAPSPLLENSRDDFSVVSANRDSALGR 463
Query: 438 RDIDYGPGGRQPWNNSVHSFNSQRAERNPWEQYGSEQYNRFRGDAFQRSSASKSSFSSGG 497
RD+ YG GG+Q WN+++ SF+S+ AERN +++G+E NR+RGDAFQ SS SKSSFS GG
Sbjct: 464 RDMGYGQGGKQHWNHNMESFSSRGAERNMRDRHGNEHNNRYRGDAFQNSSISKSSFSLGG 523
Query: 498 RGFPHNDPMHNFSRDKRPLLKREEPYQDDPFMKDFGSSSFDGRDPFSAGLVGVVKKKKDV 557
+ NDP+ NF R+KR +K E+PY +DPF+KD+GS+ FDGRDPFS GLVG+VK+KK+V
Sbjct: 524 KSLHMNDPILNFGREKRSFVKNEKPYLEDPFLKDYGSTGFDGRDPFSGGLVGLVKRKKEV 583
Query: 558 LKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQ 617
K TDFHDPVRESFEAELERVQKMQE ERQ+IIEEQERA+ELARREEEER R+AREQEEQ
Sbjct: 584 AKPTDFHDPVRESFEAELERVQKMQEMERQKIIEEQERAMELARREEEERARLAREQEEQ 643
Query: 618 RRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEE 677
+R+LEEE R+A WRAEQ+++EA R+AEEQ+IAREEE++RI++EEERRK AAKQKL+ELE
Sbjct: 644 QRKLEEEARQAAWRAEQDRVEAVRRAEEQKIAREEEKRRILVEEERRKQAAKQKLMELEA 703
Query: 678 RIAKRQAEAAKSDSNSSDIADEKS-SGLAKERDLPKMADVGDWEDGERMVERITTSASSD 736
+IA+RQAE +K D+ S+ IADEK G+ + AD+GDW+DGER+VERITTSASSD
Sbjct: 704 KIARRQAEMSKEDNFSAAIADEKMLVGMKGTK-----ADLGDWDDGERLVERITTSASSD 758
Query: 737 SSGLHRSFDMSSRNQFARDNSSGFLDRGKPFNSWRRDAFESGNSSTFITQDAENGHYSPR 796
SS L RS+++ SR +R+ SS LDRGK NSWRRDA E+GNSS F+ QD ENGH SPR
Sbjct: 759 SSSLGRSYNVGSRPISSREISSPILDRGKSINSWRRDAVENGNSSAFLPQDQENGHQSPR 818
Query: 797 RDSAFGGRAVPRKEFYGGPGIMSSRNYYKAGILEPHMDEFTVSRGQRWNMSGDGDHYGRN 856
D++ GGR RKEF+GG G MSSR+YYK G+ + +D++T ++G RWN+SGDGDHYGR+
Sbjct: 819 PDASAGGRGYSRKEFFGGGGFMSSRSYYKGGMTDHQVDDYTHAKGHRWNLSGDGDHYGRD 878
Query: 857 IEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYPNPETDVISSFGRSRYSMRHPR 916
+E++S+FH+NI E++GDVGWGQG RG++HPPY +R+Y N ++D + SFGRSRYSMR PR
Sbjct: 879 VEIDSEFHDNIGEKFGDVGWGQGPSRGHLHPPYLERMYQNSDSDELYSFGRSRYSMRQPR 938
Query: 917 VLPPPTLTSMQKPSYRRENECPSPSTFQENEVEYNRLLRSESISLAGLDRS-EQHNLAQP 975
VLPPP+L SM K SYR ENE P PSTF ++E++Y+ R+E G D S Q Q
Sbjct: 939 VLPPPSLASMHKMSYRGENERPGPSTFPDSEMQYD--ARNEPTMQTGYDNSAHQEKHEQS 996
Query: 976 EIIDVQPESTENEEQNLERSTTSRCDSQSSLSVSSAPDSPVHLSHDDLDVSGDSPALSAA 1035
EIID+Q E E EEQ LER+ T RCDSQSSLSVSS P SP HLSHDDLD SGDS L +
Sbjct: 997 EIIDIQREKAETEEQKLERNATPRCDSQSSLSVSSPPTSPTHLSHDDLDESGDSSMLPST 1056
Query: 1036 EEDKDAVLSGPVNDTVVLPMDSGNGNMIAPASSISAGDDEEWAVENDERLHEQEEYDEDE 1095
E K+ LSG N+ VVL G NM+ +SSIS DDEEW+++N+E+L EQEEYDEDE
Sbjct: 1057 TEGKEIPLSG--NEQVVLSTKGGKENMMTASSSISTADDEEWSIDNNEQLQEQEEYDEDE 1114
Query: 1096 DGYQEEDVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFNEGVEVPMPNDDFERSP 1155
+GY EED DE+I LT+E E +HL EKGSPHM+ NLVLG +EGVEV MP+D+FERS
Sbjct: 1115 EGYHEEDEVHEADEHINLTKELEDMHLGEKGSPHMVDNLVLGLDEGVEVRMPSDEFERSS 1174
Query: 1156 QNEDTT-LAPQISAGTVVEDQGSLDGLC-GNLASV-DIPSQLSIGSSSGILQETDKAIQD 1212
NE++T + P++S GT VE+QG+ G+ G + D Q+SI S ++ KAIQD
Sbjct: 1175 GNEESTFMLPKVSLGT-VEEQGAFGGIHEGQTPQLTDGSPQVSIDXSGRRGEDAGKAIQD 1233
Query: 1213 LVVQQDN-TQLSAASELMDHLNANSCSVVSTQHPIPTSVGMALQSSSDQSVMSTVTVGLS 1271
LV+Q N S AS++++ ++A+ S ++ HP P+SV +A+ SSS ++V STV+
Sbjct: 1234 LVIQPVNGPHTSVASDVLNSVDASISSSQTSLHPAPSSVNVAMHSSSGKAVTSTVSAAPG 1293
Query: 1272 QAETPVKLQFGLFSGPSLIPSPFPAIQIGSIQMPL-LHPQVGTSLAHMHPSQPPVFQFGQ 1330
QAE PVKLQFGLFSGPSLIPSP PAIQIGSIQMPL LHPQVG SL H+HPSQPP+FQFGQ
Sbjct: 1294 QAELPVKLQFGLFSGPSLIPSPVPAIQIGSIQMPLHLHPQVGPSLTHIHPSQPPLFQFGQ 1353
Query: 1331 LRYTSPVSQGVLPLAPHSVPYVQPNVPANFSLNQNAGVSQPIQHVQQTSTHKSDTFSLSG 1390
LRYTSP+SQG+LPLAP S+ +VQPNVPA+F+ NQN G S P+Q +Q T K D SL
Sbjct: 1354 LRYTSPISQGILPLAPQSMSFVQPNVPAHFTANQNPGGSIPVQAIQNT---KIDIVSLPM 1410
Query: 1391 DNHLGLVRRHLD--QGNALNEASSLPAIGSAQTTSMVQQDGAEISLIDDNKTRPDSVFEA 1448
D+ LGLV R+LD Q NA E SLP SA M A++S I +N +R + +
Sbjct: 1411 DSQLGLVPRNLDLPQDNASKEVKSLPLRVSADGNVMTSHAQADMSHIVENSSRYELGLQV 1470
Query: 1449 DEQGHHNLDMRNFKSL-NPKKSSGRLHTEASSFQSNSREKSLTGSKAQGLTSGSRGKRYV 1507
+QGHH +N+ SL N ++S G ++S QS SRE+ L+GSKAQG S +G++Y+
Sbjct: 1471 TDQGHHETVKKNYISLSNARESEGLPQNGSTSSQSFSRERDLSGSKAQGPISAGKGRKYM 1530
Query: 1508 VTARNNSFPKSSFVAAEPSRSDAVGFPRRPRR-QRTEFRVRENADKRQSTAMAPANHLGV 1566
T + NS P+SSF E SR+D+ GF R+PRR QRTEFRVREN D+RQS+ M +NH G+
Sbjct: 1531 FTVK-NSGPRSSFPVPESSRADSGGFQRKPRRIQRTEFRVRENPDRRQSSGMVSSNHSGL 1589
Query: 1567 DDNSNSSRRVTGISTRSGYRR-VVLSKSSKQINDSESSNSATMNLQERDPGSKVGKGVGN 1625
DD SN S R GIS+R+G ++ VL+K K +SE S + +E DP + KG+G
Sbjct: 1590 DDKSNISGRGAGISSRTGSKKGAVLNKPLKHTFESE--GSGPIISREVDPVGRAEKGIGK 1647
Query: 1626 ESLMKGQNISHTDEGNLKRT-IRSEDDVDASLQSGVVRVFEQPGIEAPSDEDDFIEVRSK 1684
E+L K Q+ S EGNLKR+ I + +DVDA LQSG+VRVFEQPGIEAPSDEDDFIEVRSK
Sbjct: 1648 EALTKNQSSSRAGEGNLKRSNICAGEDVDAPLQSGIVRVFEQPGIEAPSDEDDFIEVRSK 1707
Query: 1685 RQMLNDRREQKEKEIKAKSRVTKL--------------PKKHHSTSQNAIVLTSSNKISA 1730
RQMLNDRREQ+EKEIKAKSRV KL P+K STSQ+AIV T+SNKISA
Sbjct: 1708 RQMLNDRREQREKEIKAKSRVAKLILPNYVVLTILCQMPRKPRSTSQSAIVSTNSNKISA 1767
Query: 1731 STCGQGANNVRSDFAANEGRNLTNIEVSTGFNANKVSQPLAPIGTPAAKSDPQADLRSQT 1790
G+ NN+ SDFA EGR EVSTGF++N +SQPLAPIGTP +D QAD+RSQ
Sbjct: 1768 PLGGEATNNIHSDFAVAEGR--AKNEVSTGFSSNIISQPLAPIGTPTVNTDSQADIRSQP 1825
Query: 1791 NKSLKNSSIPVVSGCGKNLASGFIFDSENKIMDNVQTSMGSWGNSRLNQQVMTFTQTQLD 1850
KSL+ SS+PV+S GKN+ IFD++N ++DNV TS+GSWGN RLN+QVM TQTQLD
Sbjct: 1826 IKSLQTSSLPVISSGGKNIGPSLIFDTKNTVLDNVPTSLGSWGNGRLNKQVMALTQTQLD 1885
Query: 1851 EAMNPGKFDSCV-SVKDHTSSVSEPNMPSSSILTKDKSFSSSASPINSLLAGEKIQFGAV 1909
EAM P +FD+ V S+ DHT+SVSEP+MPSSSILTKDK+FSS+ SPINSLLAGEKIQFGAV
Sbjct: 1886 EAMKPPRFDTHVTSIGDHTTSVSEPSMPSSSILTKDKTFSSAVSPINSLLAGEKIQFGAV 1945
Query: 1910 TSPTVLPPSTRAVSHGIGPPGPCRSDIQISHNLSTPENDCTIFFDKEKNTSESCVNLEDC 1969
TSPT+LPPS+ A+SHGIG PG CRSDIQISH+LS+ ENDC +FF KEK+T ESC++LEDC
Sbjct: 1946 TSPTILPPSSHAISHGIGAPGSCRSDIQISHDLSSAENDCGLFFKKEKHTDESCIHLEDC 2005
Query: 1970 EAEAEAAASAIAVAAISSDEVVGNGLGTGSVSASETKNFGGADTDGIR-AGKNLLLPRC 2027
EAEAEAAASAIAVAAIS+DE+VGNGLG SVS +++K FG D DG GK+ L P+
Sbjct: 2006 EAEAEAAASAIAVAAISNDEIVGNGLGACSVSVTDSKGFGVPDLDGTAGGGKHFLHPKL 2064
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565158|ref|XP_002523571.1| hypothetical protein RCOM_1407450 [Ricinus communis] gi|223537133|gb|EEF38766.1| hypothetical protein RCOM_1407450 [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359480807|ref|XP_002277575.2| PREDICTED: uncharacterized protein LOC100266406 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224096768|ref|XP_002310728.1| predicted protein [Populus trichocarpa] gi|222853631|gb|EEE91178.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449448508|ref|XP_004142008.1| PREDICTED: uncharacterized protein LOC101218305 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449485561|ref|XP_004157208.1| PREDICTED: uncharacterized protein LOC101228330 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296082428|emb|CBI21433.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358349430|ref|XP_003638740.1| hypothetical protein MTR_142s1012 [Medicago truncatula] gi|355504675|gb|AES85878.1| hypothetical protein MTR_142s1012 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356565608|ref|XP_003551031.1| PREDICTED: uncharacterized protein LOC100818172 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356514250|ref|XP_003525819.1| PREDICTED: uncharacterized protein LOC100811678 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2027 | ||||||
| TAIR|locus:2074795 | 2156 | AT3G50370 "AT3G50370" [Arabido | 0.312 | 0.293 | 0.340 | 1.5e-165 | |
| DICTYBASE|DDB_G0275005 | 1486 | DDB_G0275005 "putative CCR4-NO | 0.186 | 0.254 | 0.206 | 1.1e-07 | |
| UNIPROTKB|Q9NZW4 | 1301 | DSPP "Dentin sialophosphoprote | 0.202 | 0.315 | 0.178 | 1.4e-06 | |
| CGD|CAL0003874 | 1404 | PGA55 [Candida albicans (taxid | 0.338 | 0.489 | 0.177 | 3e-05 | |
| UNIPROTKB|Q59SG9 | 1404 | PGA55 "Flocculin-like protein" | 0.338 | 0.489 | 0.177 | 3e-05 | |
| DICTYBASE|DDB_G0287625 | 981 | DDB_G0287625 [Dictyostelium di | 0.244 | 0.504 | 0.204 | 6.6e-05 | |
| RGD|1561818 | 1366 | Nhs "Nance-Horan syndrome (con | 0.088 | 0.131 | 0.286 | 7.1e-05 | |
| DICTYBASE|DDB_G0293562 | 527 | DDB_G0293562 [Dictyostelium di | 0.176 | 0.677 | 0.177 | 0.00035 | |
| FB|FBgn0004924 | 972 | Top1 "Topoisomerase 1" [Drosop | 0.160 | 0.334 | 0.200 | 0.00047 |
| TAIR|locus:2074795 AT3G50370 "AT3G50370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 1.5e-165, Sum P(4) = 1.5e-165
Identities = 237/696 (34%), Positives = 337/696 (48%)
Query: 842 QRWNMSGDGDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYPNPETDV 901
Q W + GDG +GRN MES+ EN E+YGD GWGQ + R H PY P PE
Sbjct: 689 QSWRIPGDGRTHGRNYGMESESRENFGEQYGDPGWGQSQGRPR-HGPYS----PYPEKLY 743
Query: 902 ISSFGRSRYSMRHPR--VLPPPTLTSMQKPSYRRE--NECPSPSTFQE-NEVEYNRLLRS 956
+ G Y PR V P L Q+ + +E P + Y+ R+
Sbjct: 744 QNPEGDDYYPFGRPRYSVRQPRVLPPPQESRQKTSFRSEVEHPGPSTSIGGINYSHKGRT 803
Query: 957 ESISLAGLDRSEQHNLAQPEIIDVQPESTENEEQNLERSTTXXXXXXXXXXXXXXXXXPV 1016
S LA E H+ V P S +E + + T PV
Sbjct: 804 NSTVLANY--IEDHH--------VLPGSGIDEHRRFDTKLTGRCDSQSSLSVTSPPDSPV 853
Query: 1017 HLSHDDLDVSGDSPALSAAEEDKDAVLSGPVNDTVVLPMDSGNGNMIAPASSISAGDDEE 1076
HLSHDDLD S DS L + +DA L ++ D G +++ S+S D+EE
Sbjct: 854 HLSHDDLDESADSTVLPTSRMGEDAGLLEK-GGAPIISSDIGKDSLMMATGSVSCWDNEE 912
Query: 1077 WAVENDERLHXXXXXXXXXXXXXXXXVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVL 1136
W ++++ERL G DENI+L QE E +HL++K S NLVL
Sbjct: 913 WTLDSNERLQEQEEYDEDEDGYQEEDKIHGVDENIDLAQELEEMHLDDKDS-----NLVL 967
Query: 1137 GFNEGVEVPMPNDDFERSPQNEDTTLA-PQISAGTVVEDQGSLDGLCGNLAS----VDIP 1191
GFNEGVEV +P+DDFE+ +N ++T Q + ++ +++ S++ G A+ V P
Sbjct: 968 GFNEGVEVEIPSDDFEKCQRNSESTFPLHQHTVDSLDDERPSIETSRGEQAAQPAVVSDP 1027
Query: 1192 XXXXXXXXXXXXXETDKAIQDLVVQQDNTQLSAASELMDHLNANSCSVVSTQHPIPTSVG 1251
ET +Q+L V + + S E+ +++ S S VST HP+
Sbjct: 1028 LGMHNASRTFQGAET--TMQNLTVHPNIGRQSF--EVASKVDSTSNSTVST-HPVIPLHS 1082
Query: 1252 MALQSSSDQSVMSTVTVGLSQAETPVKLQFGLFSGPSLIPSPFPAIQIGSIQMPL-LHPQ 1310
AL SS Q+ + V+ +Q E PVK QFGLFSGPSLIPSPFPAIQIGSIQMPL LHPQ
Sbjct: 1083 AALHPSSLQTAIPPVSTTSAQMEEPVKFQFGLFSGPSLIPSPFPAIQIGSIQMPLPLHPQ 1142
Query: 1311 VGTSLAHMHPSQPPVFQFGQLRYTSPVSQGVLPLAPHSVPYVQPNVPANFSLNQNAGVSQ 1370
G+SL HM QPP+ QFGQL YTSP+SQGVLP HSV VQ N + ++LNQN G
Sbjct: 1143 FGSSLTHMQQPQPPLIQFGQLPYTSPISQGVLPPPHHSV--VQANGLSTYALNQNPGSLV 1200
Query: 1371 PIQHVQQTSTHKSDTFSLSGDNH--LGLVRRHL---DQGNALNEASSLPAIGSAQTTSMV 1425
+Q Q S + + + +H L ++RR D+G N ++LP ++ ++
Sbjct: 1201 TVQLGQGNSANLLARNAATSVSHPQLSVLRRPTNVSDEGTLKN--ANLPPARASIEAAVS 1258
Query: 1426 QQDGAEISLIDDNKTRPDSVFEADEQGHHNLDMRNFKSLNPKKSSGRLHTEASSFQSNSR 1485
Q E+S N P + H NF ++S ++ T+ S+ +++
Sbjct: 1259 PQKQPELS---GNSQLPSR-----KMSHGK---SNFAE---RQSGYQVQTDTSAVRNSGL 1304
Query: 1486 EKSLTGSKAQGLTSGSRG---KRYVVTARNNSFPKS 1518
S T ++ + G+R +R R +++P S
Sbjct: 1305 RSSGTAEVSRVDSGGNRRYRRQRVEFRVRESNWPSS 1340
|
|
| DICTYBASE|DDB_G0275005 DDB_G0275005 "putative CCR4-NOT complex subunit 4" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0287625 DDB_G0287625 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| RGD|1561818 Nhs "Nance-Horan syndrome (congenital cataracts and dental anomalies)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0004924 Top1 "Topoisomerase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2027 | |||
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-13 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-11 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 6e-11 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-10 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 9e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-09 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-09 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-09 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 7e-09 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-08 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 4e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-07 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 4e-07 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 4e-07 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 5e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-07 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 7e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| pfam07767 | 387 | pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-06 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-06 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-05 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 2e-05 | |
| COG3334 | 192 | COG3334, COG3334, Uncharacterized conserved protei | 2e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-05 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 3e-05 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 3e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 5e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 6e-05 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 7e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 8e-05 | |
| pfam00992 | 131 | pfam00992, Troponin, Troponin | 8e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 9e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 1e-04 | |
| pfam05701 | 484 | pfam05701, DUF827, Plant protein of unknown functi | 1e-04 | |
| TIGR02499 | 166 | TIGR02499, HrpE_YscL_not, type III secretion appar | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 2e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 2e-04 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 2e-04 | |
| pfam03962 | 188 | pfam03962, Mnd1, Mnd1 family | 2e-04 | |
| COG1340 | 294 | COG1340, COG1340, Uncharacterized archaeal coiled- | 2e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 3e-04 | |
| COG1390 | 194 | COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su | 3e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 3e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 4e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-04 | |
| pfam06098 | 288 | pfam06098, Radial_spoke_3, Radial spoke protein 3 | 4e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 5e-04 | |
| pfam00992 | 131 | pfam00992, Troponin, Troponin | 5e-04 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 5e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 5e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 5e-04 | |
| PRK14475 | 167 | PRK14475, PRK14475, F0F1 ATP synthase subunit B; P | 5e-04 | |
| pfam04502 | 321 | pfam04502, DUF572, Family of unknown function (DUF | 5e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 5e-04 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 5e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-04 | |
| pfam05149 | 289 | pfam05149, Flagellar_rod, Paraflagellar rod protei | 6e-04 | |
| TIGR01843 | 423 | TIGR01843, type_I_hlyD, type I secretion membrane | 6e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 7e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 7e-04 | |
| pfam12757 | 126 | pfam12757, DUF3812, Protein of unknown function (D | 7e-04 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 8e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| TIGR03825 | 255 | TIGR03825, FliH_bacil, flagellar assembly protein | 8e-04 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 8e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-04 | |
| COG5269 | 379 | COG5269, ZUO1, Ribosome-associated chaperone zuoti | 9e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 0.001 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.001 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.001 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 0.001 | |
| PRK09174 | 204 | PRK09174, PRK09174, F0F1 ATP synthase subunit B'; | 0.001 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.001 | |
| pfam00430 | 132 | pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.002 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.002 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.002 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.002 | |
| PLN02316 | 1036 | PLN02316, PLN02316, synthase/transferase | 0.002 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 0.002 | |
| cd00176 | 213 | cd00176, SPEC, Spectrin repeats, found in several | 0.002 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 0.002 | |
| PRK06669 | 281 | PRK06669, fliH, flagellar assembly protein H; Vali | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 0.003 | |
| COG2811 | 108 | COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase su | 0.003 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.003 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.003 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 0.003 | |
| COG5281 | 833 | COG5281, COG5281, Phage-related minor tail protein | 0.003 | |
| PRK02292 | 188 | PRK02292, PRK02292, V-type ATP synthase subunit E; | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.004 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 0.004 | |
| TIGR02473 | 141 | TIGR02473, flagell_FliJ, flagellar export protein | 0.004 | |
| pfam05300 | 187 | pfam05300, DUF737, Protein of unknown function (DU | 0.004 | |
| COG3599 | 212 | COG3599, DivIVA, Cell division initiation protein | 0.004 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 568 RESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQ-RRRLEEETR 626
E EAE ++ +E+E R+ +QE A + REE + LR QEE R+ ++E
Sbjct: 166 EEEREAERRERKEEKEREVARLRAQQEEAED--EREELDELRADLYQEEYERKERQKEKE 223
Query: 627 EAVWRAEQEQ-LEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAE 685
EA R Q+Q L+ R+ + + + +R E ER + KQ +E + + AE
Sbjct: 224 EAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQA---EDEELEQENAE 280
Query: 686 AAK 688
+
Sbjct: 281 KRR 283
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|201540 pfam00992, Troponin, Troponin | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) | Back alignment and domain information |
|---|
| >gnl|CDD|233897 TIGR02499, HrpE_YscL_not, type III secretion apparatus protein, HrpE/YscL family | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family | Back alignment and domain information |
|---|
| >gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3 | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|201540 pfam00992, Troponin, Troponin | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|184697 PRK14475, PRK14475, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572) | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|113902 pfam05149, Flagellar_rod, Paraflagellar rod protein | Back alignment and domain information |
|---|
| >gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812) | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|169692 PRK09174, PRK09174, F0F1 ATP synthase subunit B'; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0) | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase | Back alignment and domain information |
|---|
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
| >gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here | Back alignment and domain information |
|---|
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
| >gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ | Back alignment and domain information |
|---|
| >gnl|CDD|218545 pfam05300, DUF737, Protein of unknown function (DUF737) | Back alignment and domain information |
|---|
| >gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2027 | |||
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 99.05 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.76 | |
| PF07001 | 189 | BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This | 98.56 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.46 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.4 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.39 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 98.25 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.07 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.03 | |
| PRK09510 | 387 | tolA cell envelope integrity inner membrane protei | 97.86 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 97.78 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.68 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 97.51 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 97.45 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 97.44 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 97.39 | |
| PRK09510 | 387 | tolA cell envelope integrity inner membrane protei | 97.37 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.36 | |
| TIGR02794 | 346 | tolA_full TolA protein. TolA couples the inner mem | 97.26 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 97.18 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 96.96 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 96.85 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 96.57 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 96.48 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 96.41 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 96.4 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 96.01 | |
| PF12037 | 276 | DUF3523: Domain of unknown function (DUF3523); Int | 95.43 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 95.37 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 95.15 | |
| KOG4817 | 468 | consensus Unnamed protein [Function unknown] | 94.91 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 94.63 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 94.52 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 94.41 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 93.8 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 93.44 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 93.43 | |
| KOG4722 | 672 | consensus Zn-finger protein [General function pred | 93.21 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 90.41 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 90.16 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 88.51 | |
| KOG1103 | 561 | consensus Predicted coiled-coil protein [Function | 86.31 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 85.93 | |
| KOG3654 | 708 | consensus Uncharacterized CH domain protein [Cytos | 85.48 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 85.04 | |
| PF02029 | 492 | Caldesmon: Caldesmon; InterPro: IPR006018 This gro | 84.92 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 84.76 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 84.48 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 84.27 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 84.05 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 83.9 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 82.48 | |
| KOG3634 | 361 | consensus Troponin [Cytoskeleton] | 82.14 | |
| PF06637 | 442 | PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th | 82.0 | |
| PLN03086 | 567 | PRLI-interacting factor K; Provisional | 81.9 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 81.4 | |
| PTZ00491 | 850 | major vault protein; Provisional | 80.56 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 80.54 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 80.12 |
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-10 Score=136.04 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=23.0
Q ss_pred ccCCccccCCCCCccccccccCccc
Q 000152 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (2027)
Q Consensus 839 ~~p~~W~apgDGd~igRq~E~dSd~ 863 (2027)
.+.+|||+||||+||.|||++|++-
T Consensus 1167 ~k~gmWyaHFdGq~I~RQm~l~~~k 1191 (1259)
T KOG0163|consen 1167 TKRGMWYAHFDGQWIARQMELHPDK 1191 (1259)
T ss_pred CccceEEEecCcHHHHhhheecCCC
Confidence 6789999999999999999999863
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2 | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02794 tolA_full TolA protein | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >KOG4817 consensus Unnamed protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >KOG4722 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1103 consensus Predicted coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein | Back alignment and domain information |
|---|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >KOG3634 consensus Troponin [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals | Back alignment and domain information |
|---|
| >PLN03086 PRLI-interacting factor K; Provisional | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00491 major vault protein; Provisional | Back alignment and domain information |
|---|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-14
Identities = 90/694 (12%), Positives = 182/694 (26%), Gaps = 232/694 (33%)
Query: 419 ETKFMSSPFRDTVQD-------DSGRRDI-DYGPGGRQPWNNSV--HSFNS----QRAER 464
ET ++D + + +D+ D + + H S R
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP---KSILSKEEIDHIIMSKDAVSGTLR 66
Query: 465 NPW--EQYGSEQYNRFRGDAFQRS---------------SASKSSFSSGGRGFPHNDPMH 507
W E +F + + + S + D ++
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE------QRDRLY 120
Query: 508 NFSRDKRPLLK----REEPY----------QDDPF-----MKDFGSSSFDGRDPFSAGLV 548
N D + K R +PY + + G + +
Sbjct: 121 N---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----------VA 167
Query: 549 GVVKKKKDVLKQTDFHDPV-------RESFEAELERVQKMQEQERQRIIEEQERALELAR 601
V V + DF + S E LE +QK+ Q + + +
Sbjct: 168 LDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 602 REEEERLRVAREQEEQRRR-----LEEETREAVWRAEQEQLEA----------TRKAEEQ 646
R + + R + + L V A + A TR +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLN-----VQNA--KAWNAFNLSCKILLTTRFKQVT 278
Query: 647 RIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGL-- 704
I ++ ++ L + K D D+ E +
Sbjct: 279 DFLSAATTTHISLDHH-SMTLTPDEVKSL---LLK------YLDCRPQDLPREVLTTNPR 328
Query: 705 ------AKERDLPKMADVGDWE--DGERMVERITTSASSDSSGLHRS-FDMSSRNQFA-- 753
RD D +W+ + +++ I +S + +R FD + +
Sbjct: 329 RLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----RLSVF 381
Query: 754 RDN---SSGFLDRGKPFNSW----RRDAFESGN---SSTFITQDAENGHYS--------- 794
+ + L W + D N + + + + S
Sbjct: 382 PPSAHIPTILLSL-----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 795 -PRRDSAFGGRAVPRK--EFYGGPGIMSSRNYYKAGILEPHMDEFTVSRGQRWNMSGDGD 851
+ A+ R + Y P + + ++ P++D++ S
Sbjct: 437 VKLENEY----ALHRSIVDHYNIP-----KTFDSDDLIPPYLDQYFYS------------ 475
Query: 852 HYG---RNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYPNPETDVISSFGRS 908
H G +NIE + D + + + R H N ++
Sbjct: 476 HIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIR---HDSTA----WNASGSIL------ 521
Query: 909 RYSMRHPRVLPPPTLTSMQKPSYRRENECPSPSTFQENEVEYNRLLRS-----ESISLAG 963
TL ++ Y+ +N+ +Y RL+ + I
Sbjct: 522 ------------NTLQQLKF--YKPY--------ICDNDPKYERLVNAILDFLPKIE-EN 558
Query: 964 LDRSEQHNLAQPEIIDVQPEST---ENEEQNLER 994
L S+ +L + I + E E + ++R
Sbjct: 559 LICSKYTDLLR---IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M Length = 155 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1 Length = 251 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 135 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1 Length = 332 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169 | Back alignment and structure |
|---|
| >3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis} Length = 169 | Back alignment and structure |
|---|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154 | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Length = 120 | Back alignment and structure |
|---|
| >3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1 Length = 438 | Back alignment and structure |
|---|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2027 | |||
| 3h8d_A | 141 | Myosin-VI; myosin VI, myosin 6, DAB2, cargo bindin | 93.87 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 91.29 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 85.97 | |
| 2zuo_A | 861 | MVP, major vault protein; repeat domains, protein- | 84.95 | |
| 2zuo_A | 861 | MVP, major vault protein; repeat domains, protein- | 83.71 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 82.6 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 81.76 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 80.08 |
| >3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.0071 Score=62.66 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccCCccccCCCCCccccccccCccc
Q 000152 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (2027)
Q Consensus 839 ~~p~~W~apgDGd~igRq~E~dSd~ 863 (2027)
.+.+|||+||||+||.||||+|++=
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K 58 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDK 58 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSS
T ss_pred cccceEEEeeCChhhheeeeeCCCC
Confidence 5789999999999999999999953
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2027 | ||||
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-11 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 3e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-04 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-10 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 8e-10 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 9e-09 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 7e-08 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 6e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.002 | |
| d2ap3a1 | 185 | a.24.27.1 (A:12-196) Hypothetical protein MW0975 ( | 0.001 | |
| d2ap3a1 | 185 | a.24.27.1 (A:12-196) Hypothetical protein MW0975 ( | 0.004 |
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Length = 185 | Back information, alignment and structure |
|---|
| >d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]} Length = 185 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00