Citrus Sinensis ID: 000160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1992 | 2.2.26 [Sep-21-2011] | |||||||
| Q6FK48 | 1450 | Helicase SWR1 OS=Candida | yes | no | 0.401 | 0.551 | 0.460 | 0.0 | |
| Q759G7 | 1486 | Helicase SWR1 OS=Ashbya g | yes | no | 0.384 | 0.514 | 0.464 | 0.0 | |
| Q5ARK3 | 1698 | Helicase swr1 OS=Emericel | yes | no | 0.391 | 0.458 | 0.480 | 0.0 | |
| Q6CJ38 | 1572 | Helicase SWR1 OS=Kluyvero | yes | no | 0.371 | 0.470 | 0.471 | 0.0 | |
| Q05471 | 1514 | Helicase SWR1 OS=Saccharo | yes | no | 0.375 | 0.494 | 0.470 | 0.0 | |
| Q59U81 | 1641 | Helicase SWR1 OS=Candida | N/A | no | 0.370 | 0.450 | 0.463 | 0.0 | |
| Q4WAS9 | 1695 | Helicase swr1 OS=Neosarto | yes | no | 0.398 | 0.468 | 0.461 | 0.0 | |
| Q6BKC2 | 1616 | Helicase SWR1 OS=Debaryom | yes | no | 0.375 | 0.462 | 0.466 | 0.0 | |
| O13682 | 1288 | Helicase swr1 OS=Schizosa | yes | no | 0.395 | 0.611 | 0.461 | 0.0 | |
| Q7S133 | 1845 | Helicase swr-1 OS=Neurosp | N/A | no | 0.395 | 0.427 | 0.450 | 0.0 |
| >sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1 | Back alignment and function desciption |
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Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/842 (46%), Positives = 533/842 (63%), Gaps = 43/842 (5%)
Query: 412 EEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYE 471
E S+N +D A + P + T P LL+ LR YQ GL+WL ++Y
Sbjct: 591 EHDTTSDNEKSDLFPADTTNDPLAVQDVPT------PSLLRGTLRTYQKQGLNWLASLYN 644
Query: 472 KRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK 531
NGILADEMGLGKTI TI++L++LACEK WGPHLIVVPTSV+LNWE EF ++ P FK
Sbjct: 645 NNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFK 704
Query: 532 ILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNW 591
+LTY+G+ ++RK KR+GW KP++FHVCI +Y+LI+QD FKRKKW+Y++LDEAH IKN+
Sbjct: 705 VLTYYGNPQQRKEKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKKWQYMVLDEAHNIKNF 764
Query: 592 KSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHI---------FQSHQEFKD 642
+S RWQ LLNFN++RRILLTGTPLQN++ ELWSL++FLMP F F+
Sbjct: 765 RSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFLMPQTVIDGQKVSGFADLDAFQQ 824
Query: 643 WFCNPISGMVEG-----QEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCR 697
WF P+ ++E Q+ K V++LH VLRP++LRRLK DVEKQ+P K EH++YC+
Sbjct: 825 WFGRPVDKLIETGGTYEQDNETKRTVEKLHQVLRPYLLRRLKADVEKQIPGKYEHIVYCK 884
Query: 698 LSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSF---- 753
LSKRQR LY+DF++ ++T+ATLAS NF +++ +MQLRKVCNHPDLFE RPI +SF
Sbjct: 885 LSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCNHPDLFEVRPIKTSFLFGE 944
Query: 754 DMSGIDSQLSSSVCSMLSPSPLST-ADLKGLGLLFTNLDFSMNSWESDELNAIATPASLI 812
+ S+ ++S+ + T DL+ + L FTN D S+ ++ +N +A +
Sbjct: 945 SVIARYSERANSITRRIHFHDKDTLVDLQNINLQFTNNDLEKTSYHTNTINKLACINEFV 1004
Query: 813 KERADL--NNLEEVGPFCTHRKRLNGTSIFEKIRKALLEERRREAQDRASSVAWWNSLRC 870
+E L N EE H K +N +I + ++++ E +++ + + + NS RC
Sbjct: 1005 EEVQKLRKQNAEEERQKSRHLK-INTQNI-SNFYEEFMQQKLDEQENKINFIGYLNSQRC 1062
Query: 871 QKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESF 930
+K VY +L LL + H V + + D++ R +E F
Sbjct: 1063 SRKTVYGMNLIRLLEMPH----------VSNNCIDDPNYDDLIKPLQTRLLDGRTTIEKF 1112
Query: 931 MFAIPAARAPAPVCWCSKSGASVFLQPTYKEKC--SEVLSPLLFPIRPAIVRRQVYFPDR 988
P A + + + G F+ P K E L L P + + FPD+
Sbjct: 1113 AVLTPGA-VTSNIGELT-LGMDEFVTPNSKSGIIPYEELVQLDNPFHQVQTKLTIAFPDK 1170
Query: 989 RLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP 1048
L+Q+DCGKLQ+LAILL++LK GHRALIFTQMTK+LDILE+F++ +GY YMRLDG+T+
Sbjct: 1171 SLLQYDCGKLQKLAILLQQLKDGGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKI 1230
Query: 1049 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRI 1108
E+RQ L +RFN++PKI +FILS+RSGG+GINL GADTVIFYDSDWNPAMD+Q QDRCHRI
Sbjct: 1231 EDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRI 1290
Query: 1109 GQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRT 1168
GQTR+VHIYR +SE TIE NILKKANQKR LDD++IQ G + T++F KL +LF
Sbjct: 1291 GQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDLFGSDVV 1350
Query: 1169 LPMKTMQKEKAINNGNEVSLSNADVEAALKCVEDEADYMALKRAEQEEAVDNQEFTEEAV 1228
+ + + + + +E +E L EDE D A A +E VD+++F E +
Sbjct: 1351 GDLPVIDTKPLLGSDSEAIKDPKKLEKLLAQAEDEDDVKAANSALREVNVDDEDFDESST 1410
Query: 1229 GR 1230
+
Sbjct: 1411 NK 1412
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Catalytic component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWR1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SWR1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2 | Back alignment and function description |
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| >sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swr1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1992 | ||||||
| 255564822 | 2029 | Helicase, putative [Ricinus communis] gi | 0.982 | 0.964 | 0.724 | 0.0 | |
| 356498438 | 2041 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.956 | 0.685 | 0.0 | |
| 356533141 | 2057 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.950 | 0.672 | 0.0 | |
| 224070615 | 1682 | chromatin remodeling complex subunit [Po | 0.831 | 0.985 | 0.730 | 0.0 | |
| 297829816 | 2057 | photoperiod-independent early flowering | 0.975 | 0.945 | 0.646 | 0.0 | |
| 449437916 | 2003 | PREDICTED: helicase domino-like [Cucumis | 0.959 | 0.954 | 0.649 | 0.0 | |
| 42564102 | 2055 | helicase SWR1 [Arabidopsis thaliana] gi| | 0.971 | 0.942 | 0.641 | 0.0 | |
| 11994423 | 2061 | helicase-like protein [Arabidopsis thali | 0.968 | 0.935 | 0.636 | 0.0 | |
| 449501953 | 1602 | PREDICTED: LOW QUALITY PROTEIN: helicase | 0.777 | 0.966 | 0.703 | 0.0 | |
| 357111618 | 2015 | PREDICTED: uncharacterized protein LOC10 | 0.948 | 0.937 | 0.564 | 0.0 |
| >gi|255564822|ref|XP_002523405.1| Helicase, putative [Ricinus communis] gi|223537355|gb|EEF38984.1| Helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2696 bits (6987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1453/2005 (72%), Positives = 1655/2005 (82%), Gaps = 48/2005 (2%)
Query: 1 MLDQASRGEKKLKEEEQRLRKVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQ 60
MLDQA+R E+KLKEEEQR+RKVA+NISKDVKKFW+KIEKLVLYKHQME+D +KKKALDKQ
Sbjct: 60 MLDQATREERKLKEEEQRMRKVALNISKDVKKFWIKIEKLVLYKHQMELDEKKKKALDKQ 119
Query: 61 LEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADENGAEEPGVQSKEADED 120
LEFLLGQTERYS+MLAENL D K + Q + +QP I Y++ + +EP E +D
Sbjct: 120 LEFLLGQTERYSTMLAENLGD--KSLLQHSILDQPSISYEKGHKCDTKEPA----ELVDD 173
Query: 121 DAEQHSGFEPQLDAADIDEEYDVHSEDESEDDEHTIEEDEALITEEERKEELEALHNETD 180
PQLD AD D++YDV S DESEDDE TI++DEALITEEER+EEL ALHNE D
Sbjct: 174 ---------PQLDTADNDDDYDVQS-DESEDDERTIDQDEALITEEERREELAALHNEID 223
Query: 181 IPLQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRR 240
IPL ELLKRYA KV RE++ E GE+ A+ +V E G + +L + + +S +
Sbjct: 224 IPLVELLKRYAALKVSRENTPERGENGADLSVEEGGPAESK---MLIMNHVSSSNLSLLD 280
Query: 241 CDEINGGLSISENHLLDIETSQVRDTSKKSGASTQKQALYDFSDEQEDGDFVVATGEDKD 300
++NG L + +N LL+ E + ++ S ++ AL+DF++EQEDGDFV+ GE+KD
Sbjct: 281 MTDVNGALLMKDNCLLETEMGESKNQPDTSLDPAKEHALFDFNEEQEDGDFVLVNGEEKD 340
Query: 301 DETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARYRKDMKINKISEDESDYASA 360
DETTLSEEEEL K D N +EI LLQKESE+P+ ELLARY ++ N++SEDES+Y SA
Sbjct: 341 DETTLSEEEELEKDDPTNPKNEILLLQKESEMPLIELLARYNEEFN-NEVSEDESEYTSA 399
Query: 361 LSDDLSDSPAHEDGELKLENDFMDGNVDPGASQLVMLPLTEKQEGGSEKKSEEGRESENR 420
LSD+L DSP +D EL+ ++ MD NV+PG S V+ +QE +EK +EEG ESENR
Sbjct: 400 LSDNLLDSPDKQDVELRQQDVSMDENVEPGKSLPVLDHSVNEQER-NEKIAEEGNESENR 458
Query: 421 IADAAAAARSAQPTGITFSTTQVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILAD 480
IADAAAAARSAQPTG TFSTT+VRTKFPFL+K+PLREYQHIGLDWLVTMYEKRLNGILAD
Sbjct: 459 IADAAAAARSAQPTGNTFSTTKVRTKFPFLIKYPLREYQHIGLDWLVTMYEKRLNGILAD 518
Query: 481 EMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAK 540
EMGLGKTIMTIA+LAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAK
Sbjct: 519 EMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAK 578
Query: 541 ERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 600
ERK KRQGWLKPNSFHVCITTYRL+IQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL
Sbjct: 579 ERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLL 638
Query: 601 NFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNK 660
NFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK+WF NPISGMVEGQE+VNK
Sbjct: 639 NFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKEWFSNPISGMVEGQERVNK 698
Query: 661 EVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQATLA 720
EVVDRLHNVLRPFILRRLKRDVEKQLPMK EHVIYCRLSKRQRNLYEDFIASSETQATLA
Sbjct: 699 EVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLA 758
Query: 721 SANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSVCSMLSPSPLSTADL 780
SA+FFGMIS+IMQLRKVCNHPDLFEGRPI+SSFDM GID QL+SSVCSMLSP P S+ DL
Sbjct: 759 SASFFGMISIIMQLRKVCNHPDLFEGRPIISSFDMIGIDFQLNSSVCSMLSPGPFSSVDL 818
Query: 781 KGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNGTSIF 840
GLGLLFT+LDF+M SWE DE+NAIATP+ LI+ERA+++++EE+GP RKRL GT+IF
Sbjct: 819 SGLGLLFTHLDFNMTSWECDEINAIATPSRLIEERANIDSIEEIGPQSKQRKRLPGTNIF 878
Query: 841 EKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVR 900
E+IRKAL EER REA++RA+S+AWWNSLRC+KKP+YST+L+ELLT+K+PV DI QK R
Sbjct: 879 EEIRKALFEERLREARERAASIAWWNSLRCRKKPIYSTNLQELLTIKNPVDDIYCQKVDR 938
Query: 901 RSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYK 960
SYLYSSKLAD++LSPVERF RM LVESFMFAIPAARAP P CWCSK+G+SVFL PTYK
Sbjct: 939 VSYLYSSKLADVILSPVERFHRMTDLVESFMFAIPAARAPVPTCWCSKTGSSVFLHPTYK 998
Query: 961 EKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQ 1020
EKCSE+L PLL PIRPAI+RRQVYFPDRRLIQFDCGKLQ+LA+LLR+LKS+GHRALIFTQ
Sbjct: 999 EKCSELLLPLLSPIRPAIIRRQVYFPDRRLIQFDCGKLQKLAVLLRRLKSEGHRALIFTQ 1058
Query: 1021 MTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINL 1080
MTKMLDILE FI+LYGYTYMRLDGSTQPE+RQTLMQRFNTNPKIFLFILSTRSGGVGINL
Sbjct: 1059 MTKMLDILEAFINLYGYTYMRLDGSTQPEQRQTLMQRFNTNPKIFLFILSTRSGGVGINL 1118
Query: 1081 VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD 1140
GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD
Sbjct: 1119 FGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALD 1178
Query: 1141 DLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNADVEAALKCV 1200
DLVIQSGGYNTEFFKKLDPMELFSGH+ LP K QKEK +++GNE SLSNADVEAALK
Sbjct: 1179 DLVIQSGGYNTEFFKKLDPMELFSGHKALPAKNAQKEKILSHGNEDSLSNADVEAALKYA 1238
Query: 1201 EDEADYMALKRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDN 1260
EDEADYMALK+ EQEEAVDNQEFT EA+G+ EDDELV +D ++ DEPTD + N D+
Sbjct: 1239 EDEADYMALKKVEQEEAVDNQEFT-EAIGKLEDDELVNDDDLKADEPTDLEMTI-QNKDS 1296
Query: 1261 GMMLTGNDPKEERALTFAAKEDDVDMLADVKQMAAAAAAAGEAISSFENQLRPIDRYAIR 1320
G L D +ER LTFAA DDVDMLADVKQMAAAAAA G+AIS+ ENQLRPIDRYAIR
Sbjct: 1297 GTDLNAKDSTDERTLTFAANGDDVDMLADVKQMAAAAAAGGQAISTLENQLRPIDRYAIR 1356
Query: 1321 FLELWDPIIDKTAVESEVKFEEREWELDRIEKYKEEMEAEIDDDEEPLVYERWDADFATE 1380
FLELWDPIIDK A+E EV+FEE EWELDRIEKYKEEMEAEIDDDEEPL+YE WDADFATE
Sbjct: 1357 FLELWDPIIDKAAMECEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLIYETWDADFATE 1416
Query: 1381 AYRQQV-ALAQHQLMEELESEAKEKEDADDGILDSV---KASHSKSKTKKKPKKAKFKSL 1436
AYRQQV ALAQHQLMEELE+EA EKE+ADDG D + S+ K K+KKKPKKAKFKSL
Sbjct: 1417 AYRQQVEALAQHQLMEELEAEANEKENADDGYCDPMMIDMPSNPKPKSKKKPKKAKFKSL 1476
Query: 1437 KKGALTSESKAVKEEPSVEPMSIDDDFYDEDATFSDAMSPPSTSQKKRKKAELALYDDEE 1496
KKG+LTSE K VKEEPSVE MSIDD DA++ + + S Q+KR++ E D E
Sbjct: 1477 KKGSLTSELKHVKEEPSVESMSIDD-----DASYHEEV---SAVQRKRRRVETL---DIE 1525
Query: 1497 REKISKKKSKKLKKSIPVRSPDSDSKLSRKRHDGSTELKTCESIFIDLEQKSASRSKMGG 1556
K SKKKS KLKK+ D DS LS K+ D S E K CE++ D+EQK A RSKMGG
Sbjct: 1526 LGKSSKKKSNKLKKAPETCLSDLDSNLSGKQQDDSMESKPCENMVADIEQKPAGRSKMGG 1585
Query: 1557 KISITAMPVKRVLMIKPEKLKKGNVWSRDCVPSPDVWLPQEDAILCAVVHEYGPNWSLVS 1616
+ISITAMPVKRVLMI+PEKLKKGNVWSRDCVP PD WLPQEDAILCAVVHEYGP+WSLVS
Sbjct: 1586 RISITAMPVKRVLMIRPEKLKKGNVWSRDCVPPPDSWLPQEDAILCAVVHEYGPHWSLVS 1645
Query: 1617 DILYGMTASGYYRGRYRHPVHCCERFRELIQRYILSVPDNSINEKTSNVGSGKALLKVTE 1676
+ LYGMTA G+YRGRYRHPVHCCERFRELIQRY+LS P+N INEK N GSGKALLKVTE
Sbjct: 1646 ETLYGMTAGGFYRGRYRHPVHCCERFRELIQRYVLSTPENPINEKACNTGSGKALLKVTE 1705
Query: 1677 DNVRTLLNVAAEQEDNELLLQKHFTALLSSVWRMKSRMGCRQNFSSSRNGLYLGGSFFSS 1736
DN++ LLN A EQ D+ELLLQKHFTALLSSVWRM SR + +FSSSRNGLY GG FSS
Sbjct: 1706 DNIQKLLNFATEQPDHELLLQKHFTALLSSVWRMTSRTDRQPHFSSSRNGLYFGGRLFSS 1765
Query: 1737 VTQTSCKSTREPARRVKFTNLGQSSKLLSAALHDANSRQQDDKVSNFDRREDGPVI-EQL 1795
Q S S +EPA+R++ TNL +SS+LL++ALH+ANSR DD VS +R E+ P EQL
Sbjct: 1766 FNQISLNSMKEPAKRMRITNLSESSRLLASALHEANSRPMDDTVSILNRMENVPSTSEQL 1825
Query: 1796 DLTLEFQRELVDSTISFPPRVNLSVYGSDLETSVNKSTRENHHLKDS-QVAENRFRDAAR 1854
++TLEF++E DS + PP +NLS+ SD + + K E + +K S VAE+RFRDAAR
Sbjct: 1826 EITLEFEKEETDSLVPLPPVINLSIPLSDSQRFITKDVGEENRIKASMNVAESRFRDAAR 1885
Query: 1855 ACIEDSLGWASSAFPANDAKLRSVPKSQSLGKHKLSLSDSVKCPKSKLRKTSMEHSEI-Q 1913
AC E LGWASSAFPAND KLR PK QSLGKHK SL D+VK P+SKL++T +EH EI Q
Sbjct: 1886 ACDEGGLGWASSAFPANDIKLRPGPKPQSLGKHKPSLPDTVKPPRSKLKRT-LEHGEIHQ 1944
Query: 1914 HSSPEPV--SNQSVATKDANLRFDL----IQEAWLEDMDGGRLSCMDQDLSLETVLSSEI 1967
+ EPV S +V+ +D NL+FDL +Q+ W D G +SC D +LSLE +
Sbjct: 1945 YLLAEPVFQSPHAVSPRDPNLKFDLTPAVLQDGWTNDTYGYSISCFDNELSLEIGSLEAV 2004
Query: 1968 PHNYFPDVISGLDDCSILPDYTDIG 1992
PHNY PD+ISGLDDCS+LP++TDIG
Sbjct: 2005 PHNYVPDLISGLDDCSLLPEFTDIG 2029
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498438|ref|XP_003518059.1| PREDICTED: uncharacterized protein LOC100794898 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356533141|ref|XP_003535126.1| PREDICTED: uncharacterized protein LOC100795613 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224070615|ref|XP_002303179.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222840611|gb|EEE78158.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297829816|ref|XP_002882790.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp. lyrata] gi|297328630|gb|EFH59049.1| photoperiod-independent early flowering 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449437916|ref|XP_004136736.1| PREDICTED: helicase domino-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|42564102|ref|NP_187887.3| helicase SWR1 [Arabidopsis thaliana] gi|30984019|gb|AAP40633.1| photoperiod independent early flowering1 [Arabidopsis thaliana] gi|332641727|gb|AEE75248.1| helicase SWR1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|11994423|dbj|BAB02425.1| helicase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|449501953|ref|XP_004161503.1| PREDICTED: LOW QUALITY PROTEIN: helicase domino-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357111618|ref|XP_003557609.1| PREDICTED: uncharacterized protein LOC100821638 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1992 | ||||||
| TAIR|locus:2087780 | 2055 | PIE1 "PHOTOPERIOD-INDEPENDENT | 0.940 | 0.911 | 0.585 | 0.0 | |
| DICTYBASE|DDB_G0267638 | 3069 | DDB_G0267638 "CHR group protei | 0.192 | 0.124 | 0.597 | 1.2e-240 | |
| UNIPROTKB|Q6ZRS2 | 3230 | SRCAP "Helicase SRCAP" [Homo s | 0.164 | 0.101 | 0.712 | 1.9e-239 | |
| UNIPROTKB|E1BC33 | 3242 | LOC788113 "Uncharacterized pro | 0.164 | 0.100 | 0.712 | 4.4e-239 | |
| UNIPROTKB|F1RG74 | 3230 | SRCAP "Uncharacterized protein | 0.164 | 0.101 | 0.712 | 3.5e-238 | |
| RGD|1565642 | 3182 | Srcap "Snf2-related CREBBP act | 0.164 | 0.102 | 0.712 | 6.8e-235 | |
| FB|FBgn0020306 | 3198 | dom "domino" [Drosophila melan | 0.272 | 0.169 | 0.478 | 1.9e-225 | |
| ASPGD|ASPL0000041040 | 1698 | AN9077 [Emericella nidulans (t | 0.386 | 0.452 | 0.483 | 2.1e-198 | |
| WB|WBGene00007027 | 2395 | ssl-1 [Caenorhabditis elegans | 0.161 | 0.134 | 0.670 | 4.9e-197 | |
| POMBASE|SPAC11E3.01c | 1288 | swr1 "SNF2 family helicase Swr | 0.380 | 0.587 | 0.475 | 2.7e-194 |
| TAIR|locus:2087780 PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5391 (1902.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 1138/1943 (58%), Positives = 1325/1943 (68%)
Query: 1 MLDQASRGXXXXXXXXXXXXXVAVNISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQ 60
MLDQASR VA+NISKD+KKFWMK+EKLVLYKHQ+ + +KKKA+DKQ
Sbjct: 84 MLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQ 143
Query: 61 LEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADENGAEE--PGVQSKEAD 118
LEFLLGQTERYS+MLAENLV+ +K Q +P + I+ K +DE AE+ P + S
Sbjct: 144 LEFLLGQTERYSTMLAENLVEPYKQGQNTPSKPLLTIESK-SDEERAEQIPPEINSSAGL 202
Query: 119 EDDAEQHSGFEPQLDAADIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 178
E SG P+LD
Sbjct: 203 E------SG-SPELDE-----DYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNE 250
Query: 179 TDIPLQELLKRYAVDKVGRESSAEMGE----------------DEAEPTVVEEGHVQGNG 222
D+P++ELL+RY +V RE+S E DE + + G G
Sbjct: 251 VDLPVEELLRRYTSGRVSRETSPVKDENEDNLTSVSRVTSPVKDENQDNLASVGQDHGED 310
Query: 223 NDLLAGSKLDTSGS-LVRRCDEINGGLSISENHLLDIETSQVRDTSKKSGASTQKQALYD 281
+ LA S+ +T G+ VRR ++ G L+ISE H D+E + K S ++ YD
Sbjct: 311 KNNLAASE-ETEGNPSVRRSNDSYGHLAISETHSHDLEPGMTTASVK----SRKEDHTYD 365
Query: 282 FSDEQEDGDFVVATGXXXXXXXXXXXXXXXXXXDSNNYIDEIALLQKESEIPVEELLARY 341
F+DEQED DFV+A G D+ ++++EIALLQKESE+P+E LLARY
Sbjct: 366 FNDEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKESEMPIEVLLARY 425
Query: 342 RKDMKINKIXXXXXXXXXXXXXXXXXXPAHEDGELKLENDFMDGNVDPGASQLVMLPLTX 401
++D I + E + + D D NVD +L P +
Sbjct: 426 KEDFGGKDISEDESESSFAVSEDSIV----DSDENRQQADLDDDNVDLTECKLDPEPCSE 481
Query: 402 XXXXXXXXXXXXXXX-XXNRIXXXXXXXXXXQPTGITFSTTQVRTKFPFLLKFPLREYQH 460
++I QPTG T+STT+VRTK PFLLK LREYQH
Sbjct: 482 NVEGTFHEVAEDNDKDSSDKIADAAAAARSAQPTGFTYSTTKVRTKLPFLLKHSLREYQH 541
Query: 461 IGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 520
IGLDWLVTMYEK+LNGILADEMGLGKTIMTIA+LAHLAC+KGIWGPHLIVVPTSVMLNWE
Sbjct: 542 IGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWE 601
Query: 521 TEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYL 580
TEFLKWCPAFKILTYFGSAKERK KRQGW+K NSFHVCITTYRL+IQDSK+FKRKKWKYL
Sbjct: 602 TEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRLVIQDSKMFKRKKWKYL 661
Query: 581 ILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEF 640
ILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH+FQSHQEF
Sbjct: 662 ILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEF 721
Query: 641 KDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQEHVIYCRLSK 700
KDWFCNPI+GMVEGQEK+NKEV+DRLHNVLRPF+LRRLKRDVEKQLP K EHVI+CRLSK
Sbjct: 722 KDWFCNPIAGMVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSK 781
Query: 701 RQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDX 760
RQRNLYEDFIAS+ETQATL S +FFGMIS+IMQLRKVCNHPDLFEGRPIVSSFDM+GID
Sbjct: 782 RQRNLYEDFIASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDV 841
Query: 761 XXXXXXXXXXXXXXXXTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADL-N 819
DL+ LG LFT+LDFSM SWE DE+ AI+TP+ LIK+R +L +
Sbjct: 842 QLSSTICSLLLESPFSKVDLEALGFLFTHLDFSMTSWEGDEIKAISTPSELIKQRVNLKD 901
Query: 820 NLEEVGPFCTHRKRLNGTSIFXXXXXXXXXXXXXXXQDRASSVAWWNSLRCQKKPVYSTS 879
+LE + +RK L GT+IF +DRA+++AWWNSLRCQ+KP YSTS
Sbjct: 902 DLEAIPLSPKNRKNLQGTNIFEEIRKAVFEERIQESKDRAAAIAWWNSLRCQRKPTYSTS 961
Query: 880 LRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARA 939
LR LLT+K P+ D+ K SY+YSS LADIVLSP+ERFQ+MI LVE+F FAIPAAR
Sbjct: 962 LRTLLTIKGPLDDL---KANCSSYMYSSILADIVLSPIERFQKMIELVEAFTFAIPAARV 1018
Query: 940 PAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQ 999
P+P CWCSKS + VFL P+YKEK +++LSPLL PIRPAIVRRQVYFPDRRLIQFDCGKLQ
Sbjct: 1019 PSPTCWCSKSDSPVFLSPSYKEKVTDLLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQ 1078
Query: 1000 ELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFN 1059
ELA+LLRKLK GHRALIFTQMTKMLD+LE FI+LYGYTYMRLDGST PEERQTLMQRFN
Sbjct: 1079 ELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFN 1138
Query: 1060 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1119
TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL
Sbjct: 1139 TNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRL 1198
Query: 1120 ISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKA 1179
ISESTIEENILKKANQKR LD+LVIQ+G YNTEFFKKLDPMELFSGH+ L K +KE +
Sbjct: 1199 ISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSGHKALTTKD-EKETS 1257
Query: 1180 INNGNEVSLSNADVEAALKCVEDEADYMALKRAEQEEAVDNQEFTEEAVGRPEDDELVIE 1239
+ G ++ LSNADVEAALK EDEADYMALKR EQEEAVDNQEFTEE V RPEDDELV E
Sbjct: 1258 KHCGADIPLSNADVEAALKQAEDEADYMALKRVEQEEAVDNQEFTEEPVERPEDDELVNE 1317
Query: 1240 DTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERA-LTFAAKEDDVDMLADVKQMXXXXX 1298
D ++ DEP DQG M L +D ++ERA +T +++EDD D+L DVKQM
Sbjct: 1318 DDIKADEPADQGLVAAGPAKEEMSLLHSDIRDERAVITTSSQEDDTDVLDDVKQMAAAAA 1377
Query: 1299 XXGEAISSFENQLRPIDRYAIRFLELWDPIIDKTAVESEVKFEEREWELDRIEKYKXXXX 1358
G+AISSFENQLRPIDRYAIRFLELWDPII + A+E+E FEE+EWELD IEKYK
Sbjct: 1378 DAGQAISSFENQLRPIDRYAIRFLELWDPIIVEAAMENEAGFEEKEWELDHIEKYKEEME 1437
Query: 1359 XXXXXXXXPLVYERWDADFATEAYRQQV-ALAQHQLMXXXXXXXXXXXXXXXG---ILDX 1414
PLVYE+WDADFATEAYRQQV LAQHQLM +
Sbjct: 1438 AEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREAAEVAEMVLTQN 1497
Query: 1415 XXXXXXXXXXXXXXXXXXXXXXXXXXLTSESKAVKEEPSVEPMSIDD--DFYDEDATFSD 1472
L +ESK VK +E + DD +F ++ SD
Sbjct: 1498 ESAHVLKPKKKKKAKKAKYKSLKKGSLAAESKHVKSVVKIEDSTDDDNEEFGYVSSSDSD 1557
Query: 1473 AMSPPSTSQKKRKKAELALYDDEEREXXXXXXXXXXXXXXPVRSPDSDSKLSRKRH--DG 1530
++P S K KK +L + DEE+ P+SD K + D
Sbjct: 1558 MVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKHKKSL------PNSDIKYKQTSALLDE 1611
Query: 1531 STELKTCESIFIDLEQKSASRSKMGGKISITAMPVKRVLMIKPEKLKKGNVWSRDCVPSP 1590
K +S+ +D E K +R K GK IT+MP+KRVLMIKPEKLKKGN+WSRDCVPSP
Sbjct: 1612 LEPSKPSDSMVVDNELKLTNRGKTVGKKFITSMPIKRVLMIKPEKLKKGNLWSRDCVPSP 1671
Query: 1591 DVWLPQEDAILCAVVHEYGPNWSLVSDILYGMTASGYYRGRYRHPVHCCERFRELIQRYI 1650
D WLPQEDAILCA+VHEYGPNW+ VS LYGMTA G YRGRYRHP +CCER+RELIQR+I
Sbjct: 1672 DSWLPQEDAILCAMVHEYGPNWNFVSGTLYGMTAGGAYRGRYRHPAYCCERYRELIQRHI 1731
Query: 1651 LSVPDNSINEKTSNVGSGKALLKVTEDNVRTLLNVAAEQEDNELLLQKHFTALLSSVWRM 1710
LS D+++NEK N GSGKALLKVTE+N+RTLLNVAAEQ D E+LLQKHF+ LLSS+WR
Sbjct: 1732 LSASDSAVNEKNLNTGSGKALLKVTEENIRTLLNVAAEQPDTEMLLQKHFSCLLSSIWRT 1791
Query: 1711 KSRMGCRQNFSSSRNGLYLGGSFFSSVTQTSCKSTREPARRVKFTNLGQSSKLLSAALHD 1770
+R G Q S N F SV T R+P + +K T+L S KLL +AL D
Sbjct: 1792 STRTGNDQMLSL--NSPIFNRQFMGSVNHTQ-DLARKPWQGMKVTSL--SRKLLESALQD 1846
Query: 1771 ANSRQQDDKVSNFDRREDGPVIEQ-LDLTLEFQRELVDSTISFPPRVNLSVYGSDLETSV 1829
+ Q D+ +S +E P+ + L+LTLEF R DS FPP ++LS+ GSD V
Sbjct: 1847 SGPSQPDNTISRSRLQETQPINKLGLELTLEFPRGNDDSLNQFPPMISLSIDGSDSLNYV 1906
Query: 1830 NKSTRENHHLKDSQVA-ENRFRDAARACIEDSLGWASSAFPANDAKLRSVPKSQSLGKHK 1888
N+ E+ LK S+VA ENR+R+AA ACIEDS GWAS+ FPAND K R+ K+QSLGKHK
Sbjct: 1907 NEPPGEDV-LKGSRVAAENRYRNAANACIEDSFGWASNTFPANDLKSRTGTKAQSLGKHK 1965
Query: 1889 LSLSDSVKCPKSKLRKTSMEHSE 1911
LS SDS K KSK RK E E
Sbjct: 1966 LSASDSAKSTKSKHRKLLAEQLE 1988
|
|
| DICTYBASE|DDB_G0267638 DDB_G0267638 "CHR group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6ZRS2 SRCAP "Helicase SRCAP" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BC33 LOC788113 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RG74 SRCAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|1565642 Srcap "Snf2-related CREBBP activator protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0020306 dom "domino" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000041040 AN9077 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00007027 ssl-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC11E3.01c swr1 "SNF2 family helicase Swr1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.737 |
| 3rd Layer | 3.6.4 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1992 | |||
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-101 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 3e-84 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 5e-62 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-49 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-40 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-31 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-30 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 9e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 5e-24 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-23 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 5e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 3e-04 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 0.002 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 0.002 | |
| pfam04889 | 241 | pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont | 0.003 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 328 bits (842), Expect = e-101
Identities = 129/301 (42%), Positives = 183/301 (60%), Gaps = 14/301 (4%)
Query: 458 YQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLA-HLACEKGIWGPHLIVVPTSVM 516
YQ G++WL+++ L GILADEMGLGKT+ TIA+LA +L K GP L+V P S +
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 517 LNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNS-FHVCITTYRLII---QDSKVF 572
NW EF KW PA +++ Y G +ER RQ K + V ITTY ++ + +
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 573 KRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH 632
+ +W ++LDEAH +KN KS+ ++ L ++ R+LLTGTP+QN+L ELW+L++FL P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 633 IFQSHQEFKDWFCNPI---SGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMK 689
F S + F++WF PI + + KE ++RLH +L+PF+LRR K DVEK LP K
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEKSLPPK 240
Query: 690 QEHVIYCRLSKRQRNLYEDF------IASSETQATLASANFFGMISVIMQLRKVCNHPDL 743
EHV+YC LS QR LY+ S + + ++++IMQLRK+CNHP L
Sbjct: 241 TEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICNHPYL 300
Query: 744 F 744
F
Sbjct: 301 F 301
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1992 | |||
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.93 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.93 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.92 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.88 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.83 | |
| PTZ00110 | 545 | helicase; Provisional | 99.82 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.82 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.8 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.8 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.8 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.79 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.79 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.78 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.78 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.78 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.77 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.77 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.76 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.75 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.72 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.71 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.7 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.69 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.69 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.68 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.63 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.63 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.62 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.61 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.6 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.6 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.58 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.58 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.56 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.56 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.56 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.48 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.47 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.46 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.44 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.44 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.41 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.41 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.41 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.4 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.38 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.37 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.3 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.3 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.28 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.27 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.27 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.25 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.24 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.22 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.21 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.21 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.19 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.18 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.17 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.16 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.15 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.14 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.14 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.13 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.12 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.11 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.11 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.1 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.07 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.06 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.04 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.03 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.02 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.02 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.02 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 98.97 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.89 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.89 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.81 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.8 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 98.79 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 98.79 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.78 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.78 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 98.7 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.64 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.63 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.61 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 98.61 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.61 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.59 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.58 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 98.55 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.54 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.51 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.51 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 98.43 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 98.4 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 98.38 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 98.33 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.27 | |
| KOG0048 | 238 | consensus Transcription factor, Myb superfamily [T | 98.25 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.19 | |
| PF00249 | 48 | Myb_DNA-binding: Myb-like DNA-binding domain; Inte | 98.18 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 98.16 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 98.12 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 98.09 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 98.07 | |
| PF13921 | 60 | Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: | 98.06 | |
| smart00717 | 49 | SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi | 98.06 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.06 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.02 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.95 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.86 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.84 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 97.82 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.72 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.72 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.71 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 97.66 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 97.59 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 97.58 | |
| cd00167 | 45 | SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do | 97.57 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.56 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 97.56 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.54 | |
| PLN03212 | 249 | Transcription repressor MYB5; Provisional | 97.45 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 97.43 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 97.42 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 97.41 | |
| PLN03091 | 459 | hypothetical protein; Provisional | 97.26 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.25 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 97.17 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.1 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.07 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.97 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 96.93 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 96.88 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.76 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.75 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 96.68 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 96.65 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 96.63 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 96.6 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 96.3 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 96.01 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 95.99 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.79 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.53 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.33 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 95.3 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 95.11 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 94.97 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 94.67 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 94.63 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 94.62 | |
| KOG0051 | 607 | consensus RNA polymerase I termination factor, Myb | 94.49 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 94.21 | |
| KOG0050 | 617 | consensus mRNA splicing protein CDC5 (Myb superfam | 94.09 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 94.06 | |
| KOG4329 | 445 | consensus DNA-binding protein [General function pr | 94.04 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 93.97 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 93.85 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 93.8 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 93.74 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 93.72 | |
| COG5147 | 512 | REB1 Myb superfamily proteins, including transcrip | 93.48 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 93.3 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 93.17 | |
| PF13837 | 90 | Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; | 93.15 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 92.98 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 92.74 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 92.64 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.62 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 92.6 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 92.38 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 92.16 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.08 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 91.65 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 91.62 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 91.42 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 91.38 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 91.03 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 91.03 | |
| KOG0699 | 542 | consensus Serine/threonine protein phosphatase [Si | 90.93 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 90.2 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 90.1 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 89.98 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 89.75 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 89.59 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 89.47 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 89.26 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 88.67 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 88.57 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 88.47 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 88.31 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 88.29 | |
| KOG0049 | 939 | consensus Transcription factor, Myb superfamily [T | 88.0 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 87.78 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 87.57 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 87.34 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 87.33 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 87.22 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 86.9 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 86.78 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 86.64 | |
| KOG0050 | 617 | consensus mRNA splicing protein CDC5 (Myb superfam | 86.26 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 86.14 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 85.98 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 85.92 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 85.91 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 85.74 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 85.72 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 85.61 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 85.35 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 84.86 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 84.58 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 84.57 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 84.35 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 84.28 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 84.2 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 83.74 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 83.49 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 83.35 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 83.28 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 83.15 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 83.13 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 82.88 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 82.71 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 82.22 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 82.14 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 82.09 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 81.84 | |
| KOG0051 | 607 | consensus RNA polymerase I termination factor, Myb | 81.82 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 81.49 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 81.1 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 80.52 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 80.31 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 80.13 |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-211 Score=1920.93 Aligned_cols=1201 Identities=42% Similarity=0.631 Sum_probs=887.4
Q ss_pred HHHHHHHHHHhhhhheeeehhhhhHHHHHHHHHhhhhhhhhchhhhhhHHHHHhhccCCCCCCCCCCCCCCCcccccccc
Q 000160 25 NISKDVKKFWMKIEKLVLYKHQMEVDVRKKKALDKQLEFLLGQTERYSSMLAENLVDSHKPVQQSPMREQPGIQYKEADE 104 (1992)
Q Consensus 25 ~iAkeV~~fw~~ieKvV~~K~Q~~leekrKKALd~qL~fivgqTEkYS~~Lae~l~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1992)
-.|+++.+||++.|+++.||+|-+..+||+++|++|+.|+++++.+|+.|+.+.|..+..|...-........++.
T Consensus 193 ~~a~d~~~f~ts~eevd~fk~qgr~~~kr~akl~~h~l~~~a~~~k~qr~s~qrl~k~~ep~~~k~~~~~~ll~~~---- 268 (1958)
T KOG0391|consen 193 ALAGDLVAFATSTEEVDLFKRQGRMPSKRMAKLSKHPLTPQAAQLKGQRQSQQRLDKSTEPPVQKAASLHTLLPQL---- 268 (1958)
T ss_pred HHhhhhhccccCcchhhhhhhccccccchhhhhhcCcchHHHHHHhhhHHHHhhcCCCCCchhccccccccccccc----
Confidence 3689999999999999999999999999999999999999999999999999999887665443222211111111
Q ss_pred CCCCCCCCCCcccccchhhccCCCCCCCCccCCCcccCCCCCCCCccchhhhHHHHhhcc--hHHHHHHHHHhhcCCCCC
Q 000160 105 NGAEEPGVQSKEADEDDAEQHSGFEPQLDAADIDEEYDVHSEDESEDDEHTIEEDEALIT--EEERKEELEALHNETDIP 182 (1992)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ef~~~~~ee~eDDE~TIeeeE~~~~--~~~~~~El~~L~~E~elp 182 (1992)
..+ ......+-.++++.+|-++.+.. .+++++|+.+.+.++ .+-.+.++..|+...++|
T Consensus 269 -----------~~~-------~pp~~~t~~~d~ia~f~aqqd~~-~h~d~qIeie~~~e~~~~e~~k~~i~~lk~v~~~p 329 (1958)
T KOG0391|consen 269 -----------PGR-------LPPAGVTTAADSIALFFAQQDQV-VHADTQIEIEVKTEQPNVEIPKPPISQLKIVPSQP 329 (1958)
T ss_pred -----------ccc-------CCCCCCCccccchhhhhhcchhh-hhhhhhhhhhhhhccccccccccchhhccccccch
Confidence 000 11222334566788888887655 788999999988874 367899999999999999
Q ss_pred hHHHHhhhcccccCcCCcccCCCCCCCCcccccccccCCCCccccCCccCCCCcccccccccCCCCcccccccccccccc
Q 000160 183 LQELLKRYAVDKVGRESSAEMGEDEAEPTVVEEGHVQGNGNDLLAGSKLDTSGSLVRRCDEINGGLSISENHLLDIETSQ 262 (1992)
Q Consensus 183 leeLl~~y~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~e~~~~~~~~e~~~~~~~~~~ 262 (1992)
...++.-..++....++.+. ..++.+...--++..+-.+ ++...
T Consensus 330 ~q~~lhv~~pa~e~gps~~r-------------------------------~~p~sh~sfa~~~v~e~~n-----~~~pg 373 (1958)
T KOG0391|consen 330 AQLALHVPTPASEPGPSPAR-------------------------------SSPVSHPSFATNKVLEPVN-----SRTPG 373 (1958)
T ss_pred HHHhhcCCCccccCCCCchh-------------------------------cCccccchhhhhccccccc-----ccCcc
Confidence 99988654433211111100 0111000000000000000 00001
Q ss_pred cccc-cccCCCccccccccCCCCCccCCcccccCCCCCCCccccHHHHHHhhhcCCCchhHHHhhhcCCCCCHHHHHHhh
Q 000160 263 VRDT-SKKSGASTQKQALYDFSDEQEDGDFVVATGEDKDDETTLSEEEELAKADSNNYIDEIALLQKESEIPVEELLARY 341 (1992)
Q Consensus 263 ~~~~-~~~~~~~~~~~~~~~~~~e~eD~df~~~~~e~~DdE~Ti~EqE~~e~~~~~d~~~El~~L~~e~empleeLla~Y 341 (1992)
.... +.++....+ ..-.+.+...|+++...+++..+.+++++-.|... .++|+..+++++..+.|++...|...|
T Consensus 374 vv~s~p~ps~~~~r--n~~~~h~s~~de~seq~~ee~~~~~~~~~~~e~~~--~evd~l~~lse~drddels~y~le~ey 449 (1958)
T KOG0391|consen 374 VVASAPTPSQSPAR--NATSSHDSSQDELSEQITEENQVHQRIAELREAGL--WEVDRLPKLSEADRDDELSDYLLEEEY 449 (1958)
T ss_pred eeeccCChhhcccc--ccccccccccchhhhhhHHHHHHhHhHHHhhhcch--hhhhhhhhhhccccccchhhhcccHHH
Confidence 1100 111000011 01112333444555444444444444444333333 478999999999999999999999999
Q ss_pred hcccccccCC-----ccc--------------------ccccc--cCC-CCCC-CCCCCCccccccccccCCCCCCCC--
Q 000160 342 RKDMKINKIS-----EDE--------------------SDYAS--ALS-DDLS-DSPAHEDGELKLENDFMDGNVDPG-- 390 (1992)
Q Consensus 342 ~~~~~~~~~~-----~~e--------------------~~~~~--~~s-e~~~-~~~~~ede~~~~d~D~~dEe~ds~-- 390 (1992)
-+++.....+ .++ ++..+ ..+ ++.+ ++++...++++.+..+.|...+.+
T Consensus 450 ~~Ay~~~~as~e~~~~de~~e~kqlkE~~G~~eed~~~se~kss~s~s~ed~s~dsese~seeee~s~ss~d~t~e~~~s 529 (1958)
T KOG0391|consen 450 WMAYDVAAASKEVRTVDEHHEEKQLKEERGKKEEDSGMSERKSSASISLEDDSVDSESETSEEEEASESSVDHTTELSNS 529 (1958)
T ss_pred hhccCccccccccchHHHHHHHHhhhhhcCCcccccCcccccccccceeeeccccccCcchhhhccCccccccchhhccc
Confidence 8875431100 000 00000 000 0100 111100000000011111100000
Q ss_pred ----C------ccccc----CcccccccCCCccc----c----ccchhhhhhHHHHHHHhhcCCCCCCccccccccccCC
Q 000160 391 ----A------SQLVM----LPLTEKQEGGSEKK----S----EEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFP 448 (1992)
Q Consensus 391 ----e------~~~~~----~~~~~~~~~~~~~~----~----~~~~~~~~~i~~~aa~a~s~qP~G~t~~tt~vkt~vP 448 (1992)
+ +.... .......+...+.. + .-+....++|+++++.|+++||+|+++.||.|++++|
T Consensus 530 a~~ae~~~~Dg~~~led~~~~yv~s~sed~dE~~~d~~~~~~g~~~~~~~keiadIaavae~~qpKgytl~tTqVktpvP 609 (1958)
T KOG0391|consen 530 AKEAELPLLDGMKLLEDAFLGYVTSGSEDADECPGDRESAERGNIGKPNAKEIADIAAVAEAIQPKGYTLVTTQVKTPVP 609 (1958)
T ss_pred ccccccccccchhhhcccccceecccccchhhcccccCCcccCCcCCCchhhhhhHHHHHHhhCccceeeeeeeeccCch
Confidence 0 00000 00000000000000 0 0112345689999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHHCC
Q 000160 449 FLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCP 528 (1992)
Q Consensus 449 ~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw~P 528 (1992)
++|+|.||+||++||+||++||++++|||||||||||||||||+|||||+|++|+|||||||||+|+|+||+||||||||
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCchhHHHHhhhccCCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHHHHHhcccceEE
Q 000160 529 AFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI 608 (1992)
Q Consensus 529 ~lKVL~Y~Gs~keRk~kr~gw~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~qaLl~L~a~rRL 608 (1992)
+||||+|||+.++|+.||+||.+++.||||||||+++.+|+..|++++|.|||||||||||||+|++|++|++|++++||
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRL 769 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRL 769 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhhhhhhhhhcCCC
Q 000160 609 LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPM 688 (1992)
Q Consensus 609 LLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRRtK~DVekqLP~ 688 (1992)
|||||||||+|+|||+|||||||++|.+|..|+.||++|++||+++...++...|.|||+|||||+|||+|+||+||||+
T Consensus 770 LLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpk 849 (1958)
T KOG0391|consen 770 LLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPK 849 (1958)
T ss_pred eecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCHHHHHHHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccccccccccccc--
Q 000160 689 KQEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMSGIDSQLSSSV-- 766 (1992)
Q Consensus 689 K~E~VV~c~LS~~Qr~LYdd~is~~~t~~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~~~~~~l~s~~-- 766 (1992)
||||||+|+||++||+||++||++..|+++|++|||++++|||||||||||||+||++|++.++|...++.+..++.+
T Consensus 850 KyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r 929 (1958)
T KOG0391|consen 850 KYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITR 929 (1958)
T ss_pred hhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776432
Q ss_pred --cccCCCCCC-------------cch--------------hhcccc------------ccccccccccCccchhh----
Q 000160 767 --CSMLSPSPL-------------STA--------------DLKGLG------------LLFTNLDFSMNSWESDE---- 801 (1992)
Q Consensus 767 --~~~l~~~~~-------------~~~--------------dl~~l~------------ll~~~~e~~~~~~~~~e---- 801 (1992)
..++...+. ... .+..+. ..|.......+.+...+
T Consensus 930 ~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~ 1009 (1958)
T KOG0391|consen 930 HLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASAS 1009 (1958)
T ss_pred hhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCcccccccc
Confidence 222222210 000 111111 12222222222222222
Q ss_pred ---------------hhhhcCchhHHHHHhhccccc---------------------------ccCCcc-----------
Q 000160 802 ---------------LNAIATPASLIKERADLNNLE---------------------------EVGPFC----------- 828 (1992)
Q Consensus 802 ---------------~~~l~tp~~li~~~~~l~~~~---------------------------~~~p~~----------- 828 (1992)
+..+..+..++.+......+. ...+..
T Consensus 1010 ~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~ 1089 (1958)
T KOG0391|consen 1010 SVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRP 1089 (1958)
T ss_pred chhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCC
Confidence 111111222222111000000 000000
Q ss_pred -------------ccccccCCchH------HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCc
Q 000160 829 -------------THRKRLNGTSI------FEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHP 889 (1992)
Q Consensus 829 -------------~~~~~~~g~~~------~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p 889 (1992)
.....+.|++. ...+...+.+.|.+...+++..+...+ .|+|+..+.+++.+..+
T Consensus 1090 pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~------APvyg~e~l~~c~lp~e 1163 (1958)
T KOG0391|consen 1090 PVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN------APVYGRELLRICALPSE 1163 (1958)
T ss_pred CCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc------Ccccchhhhhhhccchh
Confidence 00000111111 012334567788888888888777665 89999999888877654
Q ss_pred chhhhhhhhhhhhhccchhhhhhccChHHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCcccccc-chhhhhccccC
Q 000160 890 VCDILQQKTVRRSYLYSSKLADIVLSPVERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQP-TYKEKCSEVLS 968 (1992)
Q Consensus 890 ~~~~~~~~~~~~~~~~ss~l~~~v~s~~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~-~~~~~~~~~~s 968 (1992)
+..- +.+.........++.+++.+..++++|.|++|.+.++++.++..+++..+.... .+.......+.
T Consensus 1164 ~i~p----------~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~ 1233 (1958)
T KOG0391|consen 1164 GIVP----------WRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELA 1233 (1958)
T ss_pred hhcc----------ccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhc
Confidence 3221 112333445566777888999999999999999999999999888744443322 34445556677
Q ss_pred CCCCCchhhhhhcccccCCccccccccchHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCH
Q 000160 969 PLLFPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQP 1048 (1992)
Q Consensus 969 ~~l~~l~~~~~~~~~~fPd~rLiq~dSgKLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~ 1048 (1992)
+.+.+ ......+.++||+.||||||||||+.|+.||++|+.+||||||||||++|||+|+.||++|||.|+||||+|++
T Consensus 1234 p~~~~-~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~v 1312 (1958)
T KOG0391|consen 1234 PYFQQ-RQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSV 1312 (1958)
T ss_pred cccch-hhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccH
Confidence 77777 47888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEeccccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHH
Q 000160 1049 EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEEN 1128 (1992)
Q Consensus 1049 eqRq~lIerFN~D~~ifVfLLSTrAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEEr 1128 (1992)
+|||++|++||.|++|||||||||+||+|||||+||||||||+||||+||+||++|||||||||+|||||||+++|||||
T Consensus 1313 EqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEen 1392 (1958)
T KOG0391|consen 1313 EQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEEN 1392 (1958)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccCcCChhhhhcCCCCCchhhhhHHHhhhCCCCccCChhh-HHHHHHhhhchHHHH
Q 000160 1129 ILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPMKTMQKEKAINNGNEVSLSNAD-VEAALKCVEDEADYM 1207 (1992)
Q Consensus 1129 Ilkra~qKr~L~~~vIq~g~f~~~~fk~~d~~eLF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~al~~aede~d~~ 1207 (1992)
||+++++||+|++++|++|+|+++||++.+++|||++........... ........++.. ++.+|+.||||+|+.
T Consensus 1393 iLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~----~ad~~v~~see~~le~alA~aede~dV~ 1468 (1958)
T KOG0391|consen 1393 ILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPA----KADEFVVASEEPSLEVALAPAEDEEDVE 1468 (1958)
T ss_pred HHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCc----cchhhhhhcCcchHHHHhhhhcchHHHH
Confidence 999999999999999999999999999999999999854322111111 011123334444 899999999999999
Q ss_pred HHHHHhhHHhhhcccccccccCCCCCcccccccccCCCCCCCCCCcccccCCCCcccCCCCCchhhhhhhhcccchhHHH
Q 000160 1208 ALKRAEQEEAVDNQEFTEEAVGRPEDDELVIEDTVRTDEPTDQGGCMTANNDNGMMLTGNDPKEERALTFAAKEDDVDML 1287 (1992)
Q Consensus 1208 a~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 1287 (1992)
|++.|++|++.++++|+|..... .+.+.+++
T Consensus 1469 Aak~a~~e~e~d~~ef~E~~~~p-----------------------------------~s~~~ee~-------------- 1499 (1958)
T KOG0391|consen 1469 AAKSAEAEEEDDQAEFDEGVDSP-----------------------------------NSNCQEEP-------------- 1499 (1958)
T ss_pred HHHHHHHHHHhhhhhhhcccCCC-----------------------------------CCCcccch--------------
Confidence 99999999999999999974110 01112221
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcChhHHHHHHHHhhhccc-cchH-HhhHhhhHhhhhHHHHHHHHhHHHHHhccCCCC
Q 000160 1288 ADVKQMAAAAAAAGEAISSFENQLRPIDRYAIRFLELWDPI-IDKT-AVESEVKFEEREWELDRIEKYKEEMEAEIDDDE 1365 (1992)
Q Consensus 1288 ~~~~~~~~~~~~~~~~~~~~~~ql~pierya~~~le~~~~~-~~~~-~~~~~~~~~~~~we~~~~~~~ke~~~~~~~~~~ 1365 (1992)
.+.+++..||+||||||||||||||+++.. +.++ ..+.+|..++++|+--+|+.++-.. .||++
T Consensus 1500 -----------~a~ee~adl~eqltPIe~YainfLe~~~~~e~Eee~~eeeav~~a~rd~d~~nl~~~rl~~---eeee~ 1565 (1958)
T KOG0391|consen 1500 -----------SADEELADLMEQLTPIERYAINFLELFYTSEFEEERNEEEAVMTAVRDEDFWNLKTLRLRL---EEEED 1565 (1958)
T ss_pred -----------hhHHHHHHHHhccCcHHHHHHHHHHhccchhhhhhhhHHHHHHHHHhHHhhhcchhhccch---hhhcc
Confidence 123445679999999999999999998876 3333 3457799999999999988773221 25566
Q ss_pred Ccceeee
Q 000160 1366 EPLVYER 1372 (1992)
Q Consensus 1366 ~~l~y~~ 1372 (1992)
++|+|+|
T Consensus 1566 ell~~~~ 1572 (1958)
T KOG0391|consen 1566 ELLGYTR 1572 (1958)
T ss_pred cccccCc
Confidence 8899998
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0048 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A | Back alignment and domain information |
|---|
| >smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains | Back alignment and domain information |
|---|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
| >PLN03212 Transcription repressor MYB5; Provisional | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03091 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >KOG4329 consensus DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0049 consensus Transcription factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] | Back alignment and domain information |
|---|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1992 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 4e-56 | ||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 2e-38 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-41 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 2e-21 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 3e-38 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 1e-20 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 7e-29 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 2e-26 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 2e-21 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-112
Identities = 120/362 (33%), Positives = 186/362 (51%), Gaps = 32/362 (8%)
Query: 401 EKQEGGSEKKSEEGRESENRIADAAAAARSAQPTGITFSTTQVRTKFPFLLKFPLREYQH 460
E + E+ + +NR S+ T ++ + PF+ LR++Q
Sbjct: 183 ENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQL 242
Query: 461 IGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWE 520
G++W+ ++ K NGILADEMGLGKT+ T+A ++ L + GPH+IVVP S M W
Sbjct: 243 TGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWL 302
Query: 521 TEFLKWCPAFKILTYFGSAKERKFKRQ---------GWLKPNSFHVCITTYRLIIQDSKV 571
F KW P + Y G+ K R R+ K F+V +TTY I++D
Sbjct: 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE 362
Query: 572 FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMP 631
KW+++ +DEAH +KN +S +++L +F R+L+TGTPLQN++ EL +L++FLMP
Sbjct: 363 LGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMP 422
Query: 632 HIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKQE 691
F QE Q++ +E + LH ++PFILRRLK+DVEK LP K E
Sbjct: 423 GRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTE 472
Query: 692 HVIYCRLSKRQRNLYE-------DFIASSETQATLASANFFGMISVIMQLRKVCNHPDLF 744
++ LS Q Y+ + + A F +++++ +L+K NHP LF
Sbjct: 473 RILRVELSDVQTEYYKNILTKNYSALTAG------AKGGHFSLLNIMNELKKASNHPYLF 526
Query: 745 EG 746
+
Sbjct: 527 DN 528
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1992 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.96 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.95 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.94 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.94 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.93 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.93 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.93 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.92 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.92 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.91 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.91 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.9 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.89 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.87 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.87 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.86 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.85 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.84 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.84 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.83 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.83 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.81 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.78 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.77 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.77 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.77 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.74 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.73 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.72 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.71 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.67 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.64 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.62 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.62 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.61 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.57 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.56 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.54 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.53 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.53 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.52 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.52 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.51 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.23 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.48 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.48 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.47 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.46 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.45 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.44 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.44 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.43 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.43 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.41 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.39 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.38 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.37 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.37 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.36 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.33 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.33 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.33 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.33 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.29 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.27 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.26 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.2 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.18 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.18 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.17 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.17 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 98.98 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.92 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 98.87 | |
| 3sjm_A | 64 | Telomeric repeat-binding factor 2; human telomeric | 98.74 | |
| 1w0t_A | 53 | Telomeric repeat binding factor 1; telomere, DNA-b | 98.73 | |
| 1guu_A | 52 | C-MYB, MYB proto-oncogene protein; transcription, | 98.69 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 98.66 | |
| 1gvd_A | 52 | MYB proto-oncogene protein; transcription, transcr | 98.64 | |
| 2din_A | 66 | Cell division cycle 5-like protein; MYB_DNA-bindin | 98.63 | |
| 2d9a_A | 60 | B-MYB, MYB-related protein B; DNA binding, structu | 98.57 | |
| 1ity_A | 69 | TRF1; helix-turn-helix, telomeres, DNA binding, MY | 98.55 | |
| 2elk_A | 58 | SPCC24B10.08C protein; hypothetical protein, struc | 98.54 | |
| 1x41_A | 60 | Transcriptional adaptor 2-like, isoform B; transcr | 98.53 | |
| 2dim_A | 70 | Cell division cycle 5-like protein; MYB_DNA-bindin | 98.44 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 98.42 | |
| 2cu7_A | 72 | KIAA1915 protein; nuclear protein, SANT domain, DN | 98.38 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 98.38 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.36 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 98.34 | |
| 2llk_A | 73 | Cyclin-D-binding MYB-like transcription factor 1; | 98.28 | |
| 2yus_A | 79 | SWI/SNF-related matrix-associated actin- dependent | 98.27 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.25 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.24 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 98.23 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 98.19 | |
| 2yum_A | 75 | ZZZ3 protein, zinc finger ZZ-type-containing prote | 98.13 | |
| 2k9n_A | 107 | MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind | 98.1 | |
| 2ckx_A | 83 | NGTRF1, telomere binding protein TBP1; nuclear pro | 98.1 | |
| 2ltp_A | 89 | Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s | 97.32 | |
| 3osg_A | 126 | MYB21; transcription-DNA complex, MYB2, R2R3 domai | 98.05 | |
| 2roh_A | 122 | RTBP1, telomere binding protein-1; plant, nucleus, | 98.01 | |
| 1gv2_A | 105 | C-MYB, MYB proto-oncogene protein; transcription, | 97.97 | |
| 2juh_A | 121 | Telomere binding protein TBP1; helix, nucleus, nuc | 97.96 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 97.95 | |
| 3zqc_A | 131 | MYB3; transcription-DNA complex, DNA-binding prote | 97.86 | |
| 2cqr_A | 73 | RSGI RUH-043, DNAJ homolog subfamily C member 1; m | 97.83 | |
| 2aje_A | 105 | Telomere repeat-binding protein; DNA-binding, Trp, | 97.81 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.8 | |
| 1h89_C | 159 | C-MYB, MYB proto-oncogene protein; transcription/D | 97.75 | |
| 2cjj_A | 93 | Radialis; plant development, DNA-binding protein, | 97.71 | |
| 1h8a_C | 128 | AMV V-MYB, MYB transforming protein; transcription | 97.7 | |
| 1x58_A | 62 | Hypothetical protein 4930532D21RIK; MUS musculus a | 97.35 | |
| 2eqr_A | 61 | N-COR1, N-COR, nuclear receptor corepressor 1; SAN | 97.3 | |
| 1ign_A | 246 | Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, | 96.97 | |
| 2cqq_A | 72 | RSGI RUH-037, DNAJ homolog subfamily C member 1; m | 96.86 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.6 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.41 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.33 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.0 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 95.96 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.78 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 95.63 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.62 | |
| 1fex_A | 59 | TRF2-interacting telomeric RAP1 protein; helix tur | 95.48 | |
| 1wgx_A | 73 | KIAA1903 protein; MYB DNA-binding domain, human cD | 94.75 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 94.45 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.28 | |
| 2iw5_B | 235 | Protein corest, REST corepressor 1; oxidoreductase | 94.06 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 93.76 | |
| 3hm5_A | 93 | DNA methyltransferase 1-associated protein 1; DNA | 93.75 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 93.41 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 93.39 | |
| 2ebi_A | 86 | DNA binding protein GT-1; DNA-binding domain, phos | 93.33 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.72 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 91.04 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 90.87 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 90.53 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 90.43 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 86.19 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 85.24 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 85.09 | |
| 1ug2_A | 95 | 2610100B20RIK gene product; hypothetical protein, | 84.03 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 82.66 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 82.52 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 82.47 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 81.37 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 80.85 | |
| 2xag_B | 482 | REST corepressor 1; amine oxidase, chromatin regul | 80.16 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-81 Score=836.36 Aligned_cols=473 Identities=40% Similarity=0.712 Sum_probs=390.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHccCccEEEEcCCCChHHHHHHHHHHHHHHhcCCCCcEEEEecCCcHHHHHHHHHHH
Q 000160 447 FPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKW 526 (1992)
Q Consensus 447 vP~lLk~~LRpYQ~~GL~WLvslye~~lgGILADEMGLGKTIQtIALLa~La~ekg~~GP~LIVVPtSLL~NWe~EfkKw 526 (1992)
.|+...++|||||+.||+||+.++.++.||||||+||||||+|+|++|+++....+..+|+|||||.+++.||..||.+|
T Consensus 229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW 308 (800)
T ss_dssp CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence 45555789999999999999999999999999999999999999999999987778889999999999999999999999
Q ss_pred CCCCeEEEEeCchhHHHHhhhc-c--------CCCCCceEEEEeehhhhhchhhhhccCccEEEEcCccccCChhhHHHH
Q 000160 527 CPAFKILTYFGSAKERKFKRQG-W--------LKPNSFHVCITTYRLIIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ 597 (1992)
Q Consensus 527 ~P~lKVL~Y~Gs~keRk~kr~g-w--------~k~~~fdVVITSYe~l~qD~~~f~r~~W~~LILDEAH~IKN~~Sq~~q 597 (1992)
+|++++++|+|..+.+...+.. + .....++|+||||+++.++...|....|++|||||||+|||..++.++
T Consensus 309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~ 388 (800)
T 3mwy_W 309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYE 388 (800)
T ss_dssp STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHHH
Confidence 9999999999999887654431 1 234578999999999999999999999999999999999999999999
Q ss_pred HHHhcccceEEEEeccCCCCChHHHHHHHHHhCCCCCCChHHHHHHhcCCCCCcccccccccHHHHHHHHHhhhHhhhhh
Q 000160 598 TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRR 677 (1992)
Q Consensus 598 aLl~L~a~rRLLLTGTPLQNsL~ELwSLL~FL~P~if~s~~eF~ewFs~Pi~g~~e~~~~~~~e~v~rLhkvLrpFmLRR 677 (1992)
++..+++.+||+|||||+||++.|||+||+||+|+.|.....|.-.. ........+.+|+.+|+||++||
T Consensus 389 ~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----------~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 389 SLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----------QDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----------CTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----------cchhHHHHHHHHHHHHhHHHhhh
Confidence 99999999999999999999999999999999999998776664111 11223456789999999999999
Q ss_pred hhhhhhhcCCCceeEEEEecCCHHHHHHHHHHHHhHHHH-HHHhhcchhhHHHHHHHHHHhhCCCcccCCCCcccccccc
Q 000160 678 LKRDVEKQLPMKQEHVIYCRLSKRQRNLYEDFIASSETQ-ATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMS 756 (1992)
Q Consensus 678 tK~DVekqLP~K~E~VV~c~LS~~Qr~LYdd~is~~~t~-~~L~sgn~~silniLmqLRKvCNHP~Lfe~r~i~s~f~~~ 756 (1992)
+|.+|.+.||++.+++++|+||+.|+.+|..++...... .....+...++++++++||++||||+|+.....
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~------- 531 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEE------- 531 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHH-------
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHH-------
Confidence 999999999999999999999999999999887642111 111233456789999999999999998632100
Q ss_pred cccccccccccccCCCCCCcchhhccccccccccccccCccchhhhhhhcCchhHHHHHhhcccccccCCccccccccCC
Q 000160 757 GIDSQLSSSVCSMLSPSPLSTADLKGLGLLFTNLDFSMNSWESDELNAIATPASLIKERADLNNLEEVGPFCTHRKRLNG 836 (1992)
Q Consensus 757 ~~~~~l~s~~~~~l~~~~~~~~dl~~l~ll~~~~e~~~~~~~~~e~~~l~tp~~li~~~~~l~~~~~~~p~~~~~~~~~g 836 (1992)
. . ...
T Consensus 532 --------~---~------------------------------------------------~~~---------------- 536 (800)
T 3mwy_W 532 --------R---V------------------------------------------------LQK---------------- 536 (800)
T ss_dssp --------H---H------------------------------------------------CCC----------------
T ss_pred --------H---H------------------------------------------------HHh----------------
Confidence 0 0 000
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCccchhhHhHhhcCCcchhhhhhhhhhhhhccchhhhhhccCh
Q 000160 837 TSIFEKIRKALLEERRREAQDRASSVAWWNSLRCQKKPVYSTSLRELLTVKHPVCDILQQKTVRRSYLYSSKLADIVLSP 916 (1992)
Q Consensus 837 ~~~~~~l~~~l~e~r~~~~~e~~~~i~~~n~~rc~~~p~y~~~l~~ll~~~~p~~~~~~~~~~~~~~~~ss~l~~~v~s~ 916 (1992)
++. .. ...
T Consensus 537 ---------------------------------------~~~---------~~------------------------~~~ 544 (800)
T 3mwy_W 537 ---------------------------------------FGD---------GK------------------------MTR 544 (800)
T ss_dssp ---------------------------------------C-------------------------------------CCS
T ss_pred ---------------------------------------ccc---------cc------------------------ccH
Confidence 000 00 000
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCCCccccCCCCCccccccchhhhhccccCCCCCCchhhhhhcccccCCccccccccc
Q 000160 917 VERFQRMIGLVESFMFAIPAARAPAPVCWCSKSGASVFLQPTYKEKCSEVLSPLLFPIRPAIVRRQVYFPDRRLIQFDCG 996 (1992)
Q Consensus 917 ~erl~~l~~lve~f~~~vp~~~ap~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~l~~~~~~~~~~fPd~rLiq~dSg 996 (1992)
.... +.+...|+
T Consensus 545 ~~~~--------------------------------------------------------------------~~l~~~s~ 556 (800)
T 3mwy_W 545 ENVL--------------------------------------------------------------------RGLIMSSG 556 (800)
T ss_dssp HHHH--------------------------------------------------------------------HHHHHTCH
T ss_pred HHHH--------------------------------------------------------------------HHhhhcCh
Confidence 0000 00112489
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhc-CCCceEEEEeccccc
Q 000160 997 KLQELAILLRKLKSDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNT-NPKIFLFILSTRSGG 1075 (1992)
Q Consensus 997 KLq~L~~LL~kLks~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~-D~~ifVfLLSTrAGG 1075 (1992)
|+..|..+|.+++..|+||||||||+.|+++|+.+|...|+.|++|+|+++..+|++++++||. +...+|||+||++||
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999997 557789999999999
Q ss_pred cccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000160 1076 VGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1151 (1992)
Q Consensus 1076 ~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~ 1151 (1992)
+||||+.||+||+||++|||+.+.||+||||||||+++|+|||||+++||||+|++++.+|+.|...+|+.|....
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A | Back alignment and structure |
|---|
| >1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A | Back alignment and structure |
|---|
| >1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A | Back alignment and structure |
|---|
| >2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A | Back alignment and structure |
|---|
| >2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A | Back alignment and structure |
|---|
| >2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A | Back alignment and structure |
|---|
| >2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A | Back alignment and structure |
|---|
| >2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} | Back alignment and structure |
|---|
| >1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A | Back alignment and structure |
|---|
| >2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
| >2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C | Back alignment and structure |
|---|
| >2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 | Back alignment and structure |
|---|
| >1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 | Back alignment and structure |
|---|
| >2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A | Back alignment and structure |
|---|
| >2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
| >1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
| >2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
| >2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* | Back alignment and structure |
|---|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
| >1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 | Back alignment and structure |
|---|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
| >2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1992 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 1e-52 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 4e-45 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-26 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-12 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 2e-23 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-05 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 7e-16 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 9e-16 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-12 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 2e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 5e-07 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-06 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 2e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 3e-05 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 4e-05 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 4e-04 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 5e-04 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 183 bits (464), Expect = 1e-52
Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 448 PFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIAMLAHLACEKGIWGPH 507
P+ +K LR YQ G W+ M + LAD+MGLGKT+ TIA+ + ++ P
Sbjct: 6 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELTPS 64
Query: 508 LIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLIIQ 567
L++ P SV+ NWE E K+ P + + + K + + +TTY ++++
Sbjct: 65 LVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL--------EDYDIILTTYAVLLR 116
Query: 568 DSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMH 627
D++ K +WKY+++DEA IKN +++ ++ + SK RI LTGTP++N + +LWS+M
Sbjct: 117 DTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMT 175
Query: 628 FLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRD--VEKQ 685
FL P + S+ EFK F PI +K + + L ++ PFILRR K D +
Sbjct: 176 FLNPGLLGSYSEFKSKFATPI-------KKGDNMAKEELKAIISPFILRRTKYDKAIIND 228
Query: 686 LP 687
LP
Sbjct: 229 LP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1992 | |||
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.75 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.69 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.68 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.67 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.63 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.6 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.6 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.57 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.53 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.4 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.38 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.32 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.31 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.28 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.23 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.23 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.17 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.09 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.95 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.81 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.79 | |
| d1w0ta_ | 52 | DNA-binding domain of human telomeric protein, hTR | 98.76 | |
| d1gvda_ | 52 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.75 | |
| d1guua_ | 50 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.72 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.69 | |
| d1w0ua_ | 55 | Telomeric repeat binding factor 2, TRF2 {Human (Ho | 98.65 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.64 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.59 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 98.59 | |
| d1gv2a2 | 47 | c-Myb, DNA-binding domain {Mouse (Mus musculus) [T | 98.57 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 98.54 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 98.54 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 98.49 | |
| d1x41a1 | 47 | Transcriptional adaptor 2-like, TADA2L, isoform b | 98.47 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 98.45 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.39 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 98.35 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.35 | |
| d2ckxa1 | 83 | Telomere binding protein TBP1 {Tobacco (Nicotiana | 98.35 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.34 | |
| d2cqra1 | 60 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 98.33 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.27 | |
| d2cjja1 | 63 | Radialis {Garden snapdragon (Antirrhinum majus) [T | 98.27 | |
| d2cu7a1 | 65 | MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 | 98.22 | |
| d1igna1 | 86 | DNA-binding domain of rap1 {Baker's yeast (Sacchar | 98.06 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.93 | |
| d2iw5b1 | 65 | REST corepressor 1, CoREST {Human (Homo sapiens) [ | 97.87 | |
| d1ug2a_ | 95 | 2610100b20rik gene product {Mouse (Mus musculus) [ | 97.71 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.68 | |
| d1xc5a1 | 68 | Nuclear receptor corepressor 2 {Human (Homo sapien | 97.67 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.64 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.07 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 94.78 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.47 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 93.21 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.4 | |
| d2cqqa1 | 59 | DnaJ homolog subfamily C member 1 {Human (Homo sap | 92.3 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.62 | |
| d2crga1 | 57 | Metastasis associated protein MTA3 {Mouse (Mus mus | 85.01 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.74 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 81.18 |
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=1.6e-44 Score=434.21 Aligned_cols=173 Identities=36% Similarity=0.634 Sum_probs=163.5
Q ss_pred ccchHHHHHHHHHHHh-hCCCeEEEEeCchHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHhcC-CCceEEEEec
Q 000160 994 DCGKLQELAILLRKLK-SDGHRALIFTQMTKMLDILEEFISLYGYTYMRLDGSTQPEERQTLMQRFNTN-PKIFLFILST 1071 (1992)
Q Consensus 994 dSgKLq~L~~LL~kLk-s~G~KVLIFSQ~t~mLDILe~~L~~~Gi~y~RLDGsts~eqRq~lIerFN~D-~~ifVfLLST 1071 (1992)
.|||+..|..+|..++ ..|+||||||||+.++++|+.+|..+|+.|++|+|+|+..+|+.++++||.+ ...+|||+|+
T Consensus 99 ~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~ 178 (346)
T d1z3ix1 99 LSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS 178 (346)
T ss_dssp GSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred cCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecc
Confidence 4899999999999885 5689999999999999999999999999999999999999999999999985 4568999999
Q ss_pred cccccccCCccCCEEEEecCCCChhhHHHHHHhhcccCCcCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000160 1072 RSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNT 1151 (1992)
Q Consensus 1072 rAGG~GLNLT~AdtVIfyD~dWNPa~d~QA~gRahRIGQTRdV~VYRLIse~TIEErIlkra~qKr~L~~~vIq~g~f~~ 1151 (1992)
++||+||||++|++|||||++|||+.+.||+||||||||+++|+||||++.+||||+|++++..|+.|.+.|++++....
T Consensus 179 ~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~~~ 258 (346)
T d1z3ix1 179 KAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVE 258 (346)
T ss_dssp GGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCC
T ss_pred hhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred cccCcCChhhhhcCC
Q 000160 1152 EFFKKLDPMELFSGH 1166 (1992)
Q Consensus 1152 ~~fk~~d~~eLF~~~ 1166 (1992)
..|+..++.+||+..
T Consensus 259 ~~~~~~~l~~lf~~~ 273 (346)
T d1z3ix1 259 RHFSLGELRELFSLN 273 (346)
T ss_dssp CSSCHHHHHHHTCCC
T ss_pred hcCCHHHHHHHhcCC
Confidence 788888899999754
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} | Back information, alignment and structure |
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| >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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