Citrus Sinensis ID: 000196
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1874 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FR53 | 2481 | Serine/threonine-protein | yes | no | 0.994 | 0.751 | 0.815 | 0.0 | |
| Q0DJS1 | 2465 | Serine/threonine-protein | yes | no | 0.970 | 0.737 | 0.744 | 0.0 | |
| Q86C65 | 2380 | Target of rapamycin OS=Di | yes | no | 0.933 | 0.735 | 0.438 | 0.0 | |
| Q9Y7K2 | 2337 | Phosphatidylinositol 3-ki | yes | no | 0.929 | 0.745 | 0.377 | 0.0 | |
| O14356 | 2335 | Phosphatidylinositol 3-ki | no | no | 0.942 | 0.756 | 0.349 | 0.0 | |
| P32600 | 2474 | Serine/threonine-protein | yes | no | 0.935 | 0.708 | 0.349 | 0.0 | |
| P35169 | 2470 | Serine/threonine-protein | no | no | 0.940 | 0.713 | 0.336 | 0.0 | |
| Q9VK45 | 2470 | Target of rapamycin OS=Dr | yes | no | 0.933 | 0.708 | 0.336 | 0.0 | |
| Q9JLN9 | 2549 | Serine/threonine-protein | yes | no | 0.735 | 0.540 | 0.373 | 0.0 | |
| P42346 | 2549 | Serine/threonine-protein | yes | no | 0.735 | 0.540 | 0.373 | 0.0 |
| >sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 3140 bits (8142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1547/1898 (81%), Positives = 1681/1898 (88%), Gaps = 34/1898 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ GP A +GGGS D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+ LS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSSLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T +RG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTIVRGSTVGMAPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF +L+GN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVALFGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE SADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEL-SADNKCRE 672
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERLI PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 673 ESAKLLGCLVRNCERLILPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 732
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP LLGLLLK
Sbjct: 733 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 792
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+L G+LVWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 793 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 852
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 853 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 912
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 913 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 972
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 973 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1032
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1033 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1092
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SIHKLLLKHRLRHKEFEEI R RRREPLI+
Sbjct: 1093 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHARWRRREPLIV 1152
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR------GHQASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ +ASQRSTKEDW
Sbjct: 1153 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1212
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1213 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1272
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1273 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1332
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1333 GPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1392
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
LKAYT KASQ +NPH+VLEATLG+MRCLAALARWEELNNLCKEYW+PAEP+ARLEMAPMA
Sbjct: 1393 LKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1452
Query: 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--- 1490
A AAWNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRR K
Sbjct: 1453 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDE 1512
Query: 1491 -------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRR 1531
VLESYERAYSNMVRVQQLSELEEVI+Y TLPVGN +AE RR
Sbjct: 1513 AREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERR 1572
Query: 1532 AIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARST 1591
A+IRNMWT+RIQG+KRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA+ST
Sbjct: 1573 ALIRNMWTQRIQGSKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAKST 1632
Query: 1592 LVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651
L+KLL +DPE S EN++YHGPPQVM YLKYQWSLGE+ KRKEAF +LQ L ELSS P
Sbjct: 1633 LLKLLPFDPEVSPENMQYHGPPQVMLGYLKYQWSLGEERKRKEAFTKLQILTRELSSVPH 1692
Query: 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711
QS S+ ++ NVPL+ARV LKLG+W+ AL GL+D SI EI A+ +T A KW
Sbjct: 1693 SQSDILASMVSSKGANVPLLARVNLKLGTWQWALSSGLNDGSIQEIRDAFDKSTCYAPKW 1752
Query: 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771
KAWH+WALFNTAVMSHY RG +A Q+VV AVTGYF+SIACAA+AKGVDDSLQDILR
Sbjct: 1753 AKAWHTWALFNTAVMSHYISRG--QIASQYVVSAVTGYFYSIACAANAKGVDDSLQDILR 1810
Query: 1772 LLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG 1831
LLTLWFNHGAT +VQ AL+ GF+HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL+RIG
Sbjct: 1811 LLTLWFNHGATADVQTALKTGFSHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLIRIG 1870
Query: 1832 QSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1869
++HPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG
Sbjct: 1871 ENHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1908
|
Essential cell growth regulator that controls development from early embryo to seed production. Controls plant growth in environmental stress conditions. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q0DJS1|TOR_ORYSJ Serine/threonine-protein kinase TOR OS=Oryza sativa subsp. japonica GN=TOR PE=2 SV=3 | Back alignment and function description |
|---|
Score = 2746 bits (7119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1388/1865 (74%), Positives = 1562/1865 (83%), Gaps = 47/1865 (2%)
Query: 46 ALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENA 105
ALRKH+EE+ARDL GEAF RFM+QLY++I LL+SND AENL ALRAID LID+ GE A
Sbjct: 40 ALRKHVEEEARDLSGEAFLRFMEQLYEQICSLLQSNDVAENLLALRAIDALIDMPFGEGA 99
Query: 106 SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR 165
SKVSKF+N++RTVFEVKRD E+LV AS VLGHLA+AGGAMTADEVE Q+K AL WL GDR
Sbjct: 100 SKVSKFANFLRTVFEVKRDPEVLVPASAVLGHLAKAGGAMTADEVERQIKTALGWLGGDR 159
Query: 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225
VEYRRFA+VLILKEMAENASTVFNVHV EFVDAIWVALRDP AVRERAVEALRACL VI
Sbjct: 160 VEYRRFASVLILKEMAENASTVFNVHVPEFVDAIWVALRDPKQAVRERAVEALRACLHVI 219
Query: 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEI 285
EKRETRWRVQWYYRM EA Q GLG+NA VHSIHGSLLAVGELLRNTGEFMMSRYREVA+I
Sbjct: 220 EKRETRWRVQWYYRMCEAAQVGLGKNASVHSIHGSLLAVGELLRNTGEFMMSRYREVADI 279
Query: 286 VLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIAL 345
VL YL HRD+LVR SITSLLPRIAHFLRDRFVTNYLKICM+HIL VLR P ER SGF+AL
Sbjct: 280 VLNYLRHRDQLVRRSITSLLPRIAHFLRDRFVTNYLKICMDHILFVLRTPDERASGFVAL 339
Query: 346 GEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GL 404
GEMAGAL EL YLP ITSHL +AIAPRRG+PSLEA++CVG+ A+AMGP MEPH+R GL
Sbjct: 340 GEMAGALGAELVPYLPLITSHLHDAIAPRRGRPSLEAISCVGSFAKAMGPAMEPHIRGGL 399
Query: 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464
LD MFSAGLS LV+ALE I+ SIPSLLPTIQ+RLLDCIS L K S RP A RG
Sbjct: 400 LDAMFSAGLSDKLVEALESISTSIPSLLPTIQERLLDCISQALPK---SSVRPGAAVGRG 456
Query: 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAAL 524
+ + QQ D G VQLAL TLA FNFKGH+LLEFAR+SV+LYL+DED +TRK AA
Sbjct: 457 SRSSSLQQFVDSGGPVLVQLALGTLANFNFKGHELLEFARESVILYLEDEDCSTRKAAAT 516
Query: 525 CCCKLVANSFSGVSFTQFGASRSNRTGG-KRRRLIEELVEKLLIAAVADADVTVRHSIFS 583
CCCKLVA+S S S +QF ++R NR GG KRRRL+EE+VEKLL+AAVADADV VR S+F
Sbjct: 517 CCCKLVAHSLSASSSSQFSSNRPNRMGGAKRRRLVEEIVEKLLMAAVADADVGVRSSVFK 576
Query: 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLI 643
+LY N FDDFLAQAD +++IF ALNDE++ VRE AISVAGRLSEKNPAYVLPALRR+LI
Sbjct: 577 ALYRNPSFDDFLAQADIMTSIFVALNDEEYHVRELAISVAGRLSEKNPAYVLPALRRYLI 636
Query: 644 QLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703
QLLTYL+Q S D+KCREESA+LLGCLIR+C RLI PYIAPIHKALVARL EGTG NANN
Sbjct: 637 QLLTYLDQ-SMDSKCREESARLLGCLIRSCARLILPYIAPIHKALVARLREGTGPNANNA 695
Query: 704 IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763
+ +GVL TVG+LA+VGGF MRQY+ ELMPL+V+ALLDG AV+KREVAV+TLGQV+QSTGY
Sbjct: 696 LAAGVLATVGELAKVGGFAMRQYLPELMPLVVDALLDGGAVSKREVAVATLGQVIQSTGY 755
Query: 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ-QLSGSHGEV 822
VI+PYNEYP LLGLLLK+LNGEL WSTR EVLKVLGIMGALDPHAHKRNQ +L G H EV
Sbjct: 756 VISPYNEYPPLLGLLLKLLNGELEWSTRLEVLKVLGIMGALDPHAHKRNQHKLPGQHREV 815
Query: 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSL 882
R ++ QHI M+E P D WPSF+ SEDYYSTVAI+SLMRIL DPSL+SYHQ VVGSL
Sbjct: 816 LRPTMETAQHIVSMEELPTDFWPSFSASEDYYSTVAISSLMRILHDPSLSSYHQMVVGSL 875
Query: 883 MFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQEL 941
+FIFKSMGLGCVPYLPKVLP+LF VR C+D LK++ITWKLGTLVSIVRQHIRKYLQE+
Sbjct: 876 IFIFKSMGLGCVPYLPKVLPELFRAVRMCEDGGLKEFITWKLGTLVSIVRQHIRKYLQEI 935
Query: 942 FSLISELW-SSFSLPATNRTYRG---LPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
SL+SELW SSFSLPA NRT +G PVLHLV+QLCLALNDEFR ++ ILP CIQVL
Sbjct: 936 LSLVSELWTSSFSLPAPNRTVQGPQASPVLHLVEQLCLALNDEFRMYILHILPSCIQVLG 995
Query: 998 DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
DAERCNDY YV DILHTLEVFGG LDEHMHL+ P L+RLFKV+ VDIRR AI TLT+LI
Sbjct: 996 DAERCNDYYYVPDILHTLEVFGGNLDEHMHLVAPVLVRLFKVEL-VDIRRRAIVTLTKLI 1054
Query: 1058 PRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117
P VQV H+S LVHHLKLVLDG ND+LRKDA +ALCCLAHALGEDFTIF+ SIHKLL+KH
Sbjct: 1055 PTVQVGTHVSVLVHHLKLVLDGNNDDLRKDAAEALCCLAHALGEDFTIFVSSIHKLLVKH 1114
Query: 1118 RLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQ 1177
+R+++++EIE RL RREPLI + + Q+ + + P EVISDPL+D P E+ + Q+Q
Sbjct: 1115 HMRYRKWDEIENRLLRREPLISENLSVQKYT-QCPPEVISDPLDDFGGVPSEEADETQRQ 1173
Query: 1178 LRGHQ-----------ASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVG 1226
R HQ ASQRST+EDWAEWMRH SI LLKESPSPALRTCARLAQLQP VG
Sbjct: 1174 PRSHQVNDVRLRSAGEASQRSTREDWAEWMRHFSIALLKESPSPALRTCARLAQLQPSVG 1233
Query: 1227 RELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPI 1286
RELFAAGF SCW+Q+N TSQ+ LV+SL+ AFSS NIPPEILATLLNLAEFMEHDEKPLPI
Sbjct: 1234 RELFAAGFASCWAQMNETSQEQLVRSLKTAFSSQNIPPEILATLLNLAEFMEHDEKPLPI 1293
Query: 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVG 1346
D RLLGALAEKCRAFAKALHYKEMEFE S +M ANPV VVE+LIHINNQLHQHEAA+G
Sbjct: 1294 DTRLLGALAEKCRAFAKALHYKEMEFEAVCSKKMGANPVTVVESLIHINNQLHQHEAAIG 1353
Query: 1347 ILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406
ILTY+Q+ L+VQLKESWYEKL RWD+ALKAY K+SQAS P L+ATLGRMRCLAALAR
Sbjct: 1354 ILTYSQQHLEVQLKESWYEKLHRWDEALKAYKAKSSQASGPLQNLDATLGRMRCLAALAR 1413
Query: 1407 WEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGN 1466
WE+L+ LC+E WT +EP+ARLEMAPMAANAAW+MGEWD MAEYVSRLDDGDE+KLR LGN
Sbjct: 1414 WEDLSALCREQWTGSEPSARLEMAPMAANAAWHMGEWDHMAEYVSRLDDGDENKLRILGN 1473
Query: 1467 TAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVR 1504
T A+GDGSSNG FFRAVL VR K VLESYERAY+NMVR
Sbjct: 1474 TTASGDGSSNGAFFRAVLSVRCKKYEEARVYVERARRCLATELAALVLESYERAYNNMVR 1533
Query: 1505 VQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP 1564
VQQLSELEEVIDYCTLP+ +P+A+ RR +IRNMW ERI+GTKRNVEVWQALLAVR LVLP
Sbjct: 1534 VQQLSELEEVIDYCTLPMESPIADSRRELIRNMWNERIKGTKRNVEVWQALLAVRELVLP 1593
Query: 1565 PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQW 1624
P ED +TW+KFA LC KSGRISQA+STLVKLLQ+DPE+S E YHG PQV+ AYLKYQ+
Sbjct: 1594 PNEDRDTWIKFAKLCWKSGRISQAKSTLVKLLQFDPESSPELTLYHGHPQVVLAYLKYQY 1653
Query: 1625 SLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA 1684
++G++LKR++AF RLQ L+++L++ S S ++ VPLIARVYL L SWKRA
Sbjct: 1654 AVGDELKRRDAFCRLQDLSVQLATATNSYSGTLASQVATSNAGVPLIARVYLTLASWKRA 1713
Query: 1685 LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVH 1744
L PGLDD+SI EI+ +Y+NAT A WGKAWH WALFNT VMS YTLRG P +A ++VV
Sbjct: 1714 LSPGLDDDSIQEILVSYKNATLNAKDWGKAWHLWALFNTEVMSRYTLRGRPDIAGKYVVA 1773
Query: 1745 AVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVV 1804
AVTGYF+SIACA+ KGVDDSLQDILRLLTLWFNHGAT EVQ+ALQKGF+ VNI WLVV
Sbjct: 1774 AVTGYFYSIACASTTKGVDDSLQDILRLLTLWFNHGATSEVQMALQKGFSLVNIEMWLVV 1833
Query: 1805 LPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKV 1864
LPQIIARIHSNN+ VRELIQSLLVRIG+ HPQALMYPLLVACKSIS LR+ AAQEVVDK+
Sbjct: 1834 LPQIIARIHSNNKIVRELIQSLLVRIGKDHPQALMYPLLVACKSISILRQRAAQEVVDKI 1893
Query: 1865 RQHSG 1869
RQHSG
Sbjct: 1894 RQHSG 1898
|
Essential cell growth regulator that controls plant development. Acts through the phosphorylation of downstream effectors that are recruited by the binding partner RAPTOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1499 bits (3881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1898 (43%), Positives = 1191/1898 (62%), Gaps = 148/1898 (7%)
Query: 24 DALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDR-ISGLLESN 81
DAL ++L DL + + AS L+ ++ Q+R++ E F++FM++L + I L+ S+
Sbjct: 12 DALTKLLNDLKSKKEEDRVKASKNLKSYVISQSREMTNENFTKFMNELNNNLIFELVNSS 71
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
E +G + AIDELIDV ENA+K+++ +NY+R D ++++ASK LG LAR+
Sbjct: 72 VIPEKIGGIMAIDELIDVDYDENATKITRLANYLRIGLGFN-DFTVMLMASKALGRLARS 130
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
G +TA+ VEF+V AL+WL GDR+E RR AAVL+LKE+A+NA T+F VH + FVD IWV
Sbjct: 131 SGTLTAEFVEFEVTRALEWLSGDRIEARRHAAVLVLKELAQNAPTLFYVHASSFVDLIWV 190
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261
AL+DP +A+RE AVEALRACL +I +RE+R R+QWY ++++ Q +N SIHGSL
Sbjct: 191 ALKDPKVAIREGAVEALRACLELISERESRLRLQWYQKIYDEAQKSFKQNGSPESIHGSL 250
Query: 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321
+ V ELLRNTG+FM+S+++++ E VL+Y +HRD+LV+ ++ +L PR+A F FV NY
Sbjct: 251 ITVSELLRNTGDFMLSKFKDICETVLKYKDHRDKLVKKTVLALFPRLAVFCSRDFVLNYF 310
Query: 322 KICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381
CMNH+L LR ER + FIALGE+A A+ G + YL +I +++ + + + E
Sbjct: 311 NACMNHLLAALRNQNERPTAFIALGEIAMAVGGSIKPYLDSIVVMIKQGLMTKGKQFCPE 370
Query: 382 ALACVGNIARAMGPVMEPHVRGLL-DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLL 440
L C+ +A A+G M PH++ +L ++ S+GL+ L DAL +T+++P+L+P IQ +LL
Sbjct: 371 VLTCISMLASAVGQSMYPHMQVILPQMIVSSGLTVVLTDALRDLTINLPTLIPNIQYKLL 430
Query: 441 DCISFVLSKSHYSQA------RPAATPIRGNVMNIPQ--QVSDLNGSAPVQLALQTLARF 492
+ IS VL+ +S+ R +ATP +G +IPQ Q SD++ + LAL+TL F
Sbjct: 431 NLISQVLANKPFSEPGAPSPYRKSATPFQGG--SIPQLGQNSDVDPQM-IALALKTLGSF 487
Query: 493 NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552
+F H+LLEF R+ VV YLDD++ R++AA+ C +L+ G T G
Sbjct: 488 DFSKHNLLEFVRECVVNYLDDDNIEIRREAAITCAQLMV-----------GTEEPTPTRG 536
Query: 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDED 612
++ E++EKLL+ +AD D ++R ++ SSL FD +LAQA+ L ++F ALNDE
Sbjct: 537 HSAVIVGEVLEKLLVVGIADPDPSIRKTVLSSLEAR--FDHYLAQAENLRSLFIALNDEL 594
Query: 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672
F++RE AI+V GRL+ +NPAYV+P+LR+ LIQLLT LE S D + +EESA+LLG LI
Sbjct: 595 FEIRELAITVIGRLTIRNPAYVMPSLRKTLIQLLTELE-FSGDGRNKEESARLLGHLISA 653
Query: 673 CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732
E+LI+PY+ PI KAL+ +L + +N + S VL +G+L+ VGG M Q+I L+P
Sbjct: 654 SEKLIKPYVEPILKALLPKLRD-----SNPRVASCVLAALGELSVVGGEEMVQHIDSLLP 708
Query: 733 LIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792
LI++ L D ++ +KREVA+ TL Q+ STGYVI P+++YP LL LL + E + S RR
Sbjct: 709 LIIDTLQDQSSTSKREVALKTLAQLASSTGYVIKPFSKYPMLLDTLLNAIKTERIGSIRR 768
Query: 793 EVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852
EV+KVLGI+G+LDP+ HK N+ G E +A D + M + + PS +ED
Sbjct: 769 EVIKVLGILGSLDPYKHKMNEL--GKRREDPKANDDKNNN---MTNEVITISPS---NED 820
Query: 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD 912
YY TVA+ +LM+ILRDPSL+S+H V+ ++M+IFKS+ L +P+LP+++P H + T +
Sbjct: 821 YYPTVALTALMKILRDPSLSSHHTSVIQAVMYIFKSLSLKSIPFLPQIMPPFLHAMNTGE 880
Query: 913 DYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972
++++ +LG+LVSIV+QHIR YL +F+LI + W+S L +P++ LV++
Sbjct: 881 PLFREFLFQQLGSLVSIVKQHIRDYLVNVFALIEKYWNSNLL---------IPIIKLVEE 931
Query: 973 LCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPA 1032
+ ALNDEF+ +LP ++P + VL +R + +L LEVFG LD+++HL++PA
Sbjct: 932 ISSALNDEFKVYLPNLIPQMLNVLH-TDRSPKRSPTTKVLRALEVFGTNLDDYLHLVIPA 990
Query: 1033 LIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDA 1091
+++LF +VD +R AI+T+ RL ++ + + S ++H L VLD ELR++ ++
Sbjct: 991 IVKLFEQVDVTTQVRTLAIQTIGRLCKKLNFSDYASRIIHPLARVLDSTESELREETLNT 1050
Query: 1092 LCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL-------GSTAA 1144
LC L + LG D+ IFIP + K+L + ++ +E + +L + + L+L G A
Sbjct: 1051 LCALVYQLGSDYAIFIPMVGKVLARREIQSTNYELLISKLLKNQQLMLTPGSGDDGGMGA 1110
Query: 1145 QQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH-----QASQRSTKEDWAEWMRHL 1199
+ + + N+ S P + G K H + SQRSTKEDW EW+R
Sbjct: 1111 NRFGGDHNGHHLGEDHNNT-STPLDIGVKKLKANEQHLKNAWETSQRSTKEDWGEWIRRF 1169
Query: 1200 SIELLKESPSPALRTCARLAQ-LQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFS 1258
S+ELL+ESPSPALR+C LAQ P V +ELF AGFVSCW++L+ Q+ LV+SLE A
Sbjct: 1170 SVELLRESPSPALRSCLSLAQDYHPLV-KELFNAGFVSCWTELHEQFQEELVRSLETALL 1228
Query: 1259 SPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSN 1318
SPNIPPEIL TLLNLAEFME EKPLPIDIR LGALAEKC A+AKALHYKE EF +
Sbjct: 1229 SPNIPPEILQTLLNLAEFMELHEKPLPIDIRTLGALAEKCHAYAKALHYKESEFSQS--- 1285
Query: 1319 RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYT 1378
P + +EALI INNQL Q EAA+GIL YAQK V+LKE WYEKL+RW+DAL AY
Sbjct: 1286 -----PSSTIEALISINNQLQQPEAAIGILIYAQKNHSVELKEGWYEKLRRWEDALAAYE 1340
Query: 1379 NKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW-TPAEPAARLEMAPMAANAA 1437
K N + E T+G +RCL AL WE L+ L E W + R +AP+AA AA
Sbjct: 1341 KKQKDDPNGGTI-ENTMGILRCLHALGEWERLSALSSETWKSDINDHTRATIAPLAAAAA 1399
Query: 1438 WNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVL----- 1492
WN+ WD+M EYV A N D + G+F+RA+L V
Sbjct: 1400 WNLVNWDKMDEYV----------------CAMNKD-TVEGSFYRAILEVHHDNFTLAHGF 1442
Query: 1493 -----------------ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIR 1535
ESY RAY +VR+QQLSELEE+I+Y V +P RR +I+
Sbjct: 1443 IDHARTLVDTELTALLGESYNRAYKVVVRLQQLSELEEIIEYKKC-VDSP---ERRNMIK 1498
Query: 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKL 1595
N W R++G + NV++WQ++LAV +LV+ P E+++ WLKF LCRK R+ A+ TL L
Sbjct: 1499 NTWKTRLRGCQHNVDIWQSILAVHSLVISPHEELDMWLKFVGLCRKGSRLGLAQKTLTML 1558
Query: 1596 LQYDPETSHE--NVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQ 1653
+ DP T+ + +V + P++ +AY+K WS G ++ AF +L+T L
Sbjct: 1559 MGKDPSTTSQFGSVLPNTHPRITFAYIKQLWSAG---AKQPAFEKLRTFVQALRD----- 1610
Query: 1654 SAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713
+ ++PL R YLKLG W+ AL L + SIP II++++ AT+C W K
Sbjct: 1611 -----------TDDLPLQGRAYLKLGEWQLALGDTLSEASIPHIISSFKAATECDPNWYK 1659
Query: 1714 AWHSWALFNTAVMSHYTLR-GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772
AWHSWAL N V+SHY G P ++ AV +F SI+ G D SLQD LRL
Sbjct: 1660 AWHSWALINFEVVSHYEQNGGTPEQIGAHLLPAVHSFFKSISL-----GPDRSLQDTLRL 1714
Query: 1773 LTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQ 1832
LTLWF HGA +EV+ AL +GF ++I+TWL V+PQIIARIH+ VR L+ L+ IG+
Sbjct: 1715 LTLWFKHGAQKEVEAALMQGFNTISIDTWLHVIPQIIARIHAPVLPVRRLLHELIDTIGK 1774
Query: 1833 SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
HPQAL+YPL VA KS S R AAA+ ++DK+R+HS T
Sbjct: 1775 EHPQALVYPLTVATKSHSPARLAAAKSLMDKMRKHSAT 1812
|
Regulates cell growth, chemotaxis, signal relay and the actin cytoskeleton. Functions as a part of 2 distinct protein complexes TORC1 and TORC2. TORC1 is a rapamycin-sensitive complex that controls cell growth in response to nutrients and growth factors. The second TOR complex, TORC2, is presumed to be indirectly negatively modulated by rapamycin and regulates actin polarization. TORC2 but not TORC1 negatively regulates phagocytosis. TORC2-dependent regulation of the cytoskeleton may follow differential phosphorylation of pkbA. May have some protein kinase activity, as it appears to phosphorylate pkgB. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/1877 (37%), Positives = 1082/1877 (57%), Gaps = 135/1877 (7%)
Query: 40 KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99
+ A+ L +++ +R+L GEA +F + + + L+ S D + L + AI+ LID
Sbjct: 15 RNKAANDLYEYVIAYSRELSGEALVQFNNDVNKYVYTLIHSTDPLDRLAGVTAINRLIDY 74
Query: 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALD 159
GE+ +++++F+NY+R + D++ VLA+K LG LA GGA+T++ V F+VK AL+
Sbjct: 75 E-GEDTTRITRFANYLRIILP-GTDQKATVLAAKALGRLAVPGGALTSEFVNFEVKRALE 132
Query: 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALR 219
WL+G+R E RR+AAVLILKE+A+N ST+ H+ + +W LRDP + +R + +AL
Sbjct: 133 WLQGERNENRRYAAVLILKELAKNTSTLIYAHIDSIFELLWHGLRDPKVTIRIASADALS 192
Query: 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY 279
L+++ +R++ R+QWY + Q G+ + + + IHGSLL +L G FM RY
Sbjct: 193 EFLKIVRQRDSSIRLQWYTSILNEAQRGVAQGSSDY-IHGSLLVYRQLFLKAGMFMHERY 251
Query: 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD 339
REV++I+L++ +H+D L+R ++T L+ +A + D FV+NYL +CM H+L +L+ +
Sbjct: 252 REVSDIILQFRDHKDLLIRKTVTELIATLAAYNPDEFVSNYLHVCMLHLLNLLKKENVKM 311
Query: 340 SGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEA--LACVGNIARAMGPV 396
F +G++A A+ + YL I ++E++ R K + +A C+ ++ A+G
Sbjct: 312 LAFATIGKVAVAITNSIIPYLDPICDSIKESLKIHIRNKSASDAAIFQCISLLSIALGQA 371
Query: 397 MEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456
+ L D++F++GLS AL + +IP LLP IQ+RLLD +S +LS +
Sbjct: 372 FSNYAYDLFDLIFASGLSEASYRALSDLAHNIPPLLPVIQERLLDMLSKILSGRPFI--- 428
Query: 457 PAATPIRGNVMNIPQQVS----------DLNGSAPVQ---LALQTLARFNFKGHDLLEFA 503
P P PQ V+ G P LAL+ L F+F G+ L EF
Sbjct: 429 PPGCP--------PQYVARSLKSSKSASLKTGFFPNDVYILALKVLGNFDFSGYILNEFV 480
Query: 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE 563
+D VV+YL++ D RK A++ C +L A ++T +++ E++E
Sbjct: 481 KDCVVVYLENNDPEVRKTASITCSQLFARD-----------PILSQTSDHAIQVVAEVLE 529
Query: 564 KLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623
KLL + D +R ++ +SL + F+ LAQAD + +F A+NDE+F VRE A+ +
Sbjct: 530 KLLTVGICDTVPDIRLTVLNSL--DSRFNKHLAQADKIRLLFIAINDENFAVRESALRII 587
Query: 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683
GRL+ NPAYV+P LR+ +++ LT L+ S+ + +EE+AKLL LI RLI ++ P
Sbjct: 588 GRLNVYNPAYVMPYLRKIMLKTLTILDYSTII-RTKEENAKLLCLLIAAAPRLIESHVEP 646
Query: 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743
I + L+ + + + I A + ++ ++G++ ++ G + +I +LMPLI+EAL D ++
Sbjct: 647 ILQILLPKAKDSSSIVA-----ASIVNSLGEICQISGEVIVPFIKDLMPLIIEALQDQSS 701
Query: 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803
+R A+ LG + STGYVI PY E+P LL +L+ + E + RRE +K++G +GA
Sbjct: 702 PIRRAAALKALGNLSSSTGYVIDPYIEFPSLLDILIGITKTEQDITIRRETIKLIGTLGA 761
Query: 804 LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMD-LWPSFATSEDYYSTVAINSL 862
LDP+ H+ ++ T ++I P M + PS S++YY TV I +L
Sbjct: 762 LDPNRHRVLEK-------GTEKVVPEQKNIPPDISLLMSGIGPS---SDEYYPTVVITAL 811
Query: 863 MRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWK 922
M IL+DPSL +H V+ ++M+IFK+MGL C P+L +++P+ +RTC + ++ +
Sbjct: 812 MSILKDPSLTIHHTAVIQAVMYIFKTMGLRCAPFLSQIIPEFIAVMRTCPTNILEFYFQQ 871
Query: 923 LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982
L LV IVRQHIR +L +LF LI + W+ P +N + +L L++ L A+ EF+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWN----PHSNLQF---TILSLIESLARAMQGEFK 924
Query: 983 THLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF-KVDA 1041
+LP +L +Q+ + +LH VFG TL ++ H+LL ++RL+ + D
Sbjct: 925 PYLPSLLVMMLQIFDSDVSVD-SVSTKKVLHAFIVFGDTLADYFHMLLDPILRLYERNDV 983
Query: 1042 PVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101
+ I+ + + T+ RL + ++ + S ++H + +L N L + ++D +C L + L
Sbjct: 984 SIGIKESIMITIGRLSMVINLSEYASRIIHPVMRMLSCNNASLIRVSMDTVCALIYQLNV 1043
Query: 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLN 1161
DF IFIP I K L + + H+ + + + + +PL + + P E P
Sbjct: 1044 DFAIFIPMIDKCLKMNGVTHETYSILVEQFLQEQPLPI---------KLNPYEKYDKPKL 1094
Query: 1162 DVDSDPYEDGTDA----QKQLRGH-QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCA 1216
DV + + + Q+ LR +ASQRSTK+DW EW+R L + LL+ESPS ALR CA
Sbjct: 1095 DVVASAADITSKKLPVNQEILRNAWEASQRSTKDDWQEWIRRLGVALLRESPSHALRACA 1154
Query: 1217 RLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEF 1276
LA + R+LF A FVSCWS+L Q+ LV+S+E+A +SP+I PEI+ LLNLAEF
Sbjct: 1155 ALAAAYQPLARDLFNASFVSCWSELYDHFQEELVKSIEIALTSPHISPEIIQILLNLAEF 1214
Query: 1277 MEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINN 1336
MEHD+KPLPIDIR LGA A KC AFAKALHYKE+EF + V +EALI INN
Sbjct: 1215 MEHDDKPLPIDIRTLGAYAAKCHAFAKALHYKELEF--IEEELVTKPSVDTIEALISINN 1272
Query: 1337 QLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNK-ASQASNPHIVLEATL 1395
QL Q +AA+GIL +AQ+ + LKE+WYEKLQRW+DAL AY + A+ A N E T+
Sbjct: 1273 QLQQPDAAIGILKHAQQHDKMNLKETWYEKLQRWEDALSAYEKREAAGAGN----FEITM 1328
Query: 1396 GRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455
G++RCL AL W+ L+ L +E W A AR +AP++ AAW +G+W+QM EY+S +
Sbjct: 1329 GKLRCLHALGEWDRLSQLAQENWIHAGHDARRYIAPLSVAAAWGLGQWEQMDEYISVMK- 1387
Query: 1456 GDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVL----------ESYERAYSNMVRV 1505
ES + N F A + R + L ESY RAYS VRV
Sbjct: 1388 -SESPDKAFFNAIV---ALHRSQFEEAASYITRARDLLDTELTALVGESYNRAYSVAVRV 1443
Query: 1506 QQLSELEEVIDYCTLPVGNPVAEGR---RAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562
Q LSELEE+I Y AE + R +I+ W R++G +RNV+VWQ +L +R+LV
Sbjct: 1444 QMLSELEEIITYKK-------AEDKPEVREMIKKTWVRRLKGCQRNVDVWQRMLRIRSLV 1496
Query: 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKY 1622
+ P +++E W+KFA+LCRKSGRIS A+ +L LL+ D + V P ++YA LK+
Sbjct: 1497 ISPRDNMEMWIKFANLCRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANLKF 1556
Query: 1623 QWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA---ASTSLTTATSTN-----VPLIARV 1674
W++ D KRK A +Q +L S + A STS+ T S L+AR
Sbjct: 1557 LWAV--DDKRK-ALNSMQEFTSQLISDINVDPALFVQSTSVNTQKSQEEIQYYFHLLARC 1613
Query: 1675 YLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL--FNTAVMSHYTLR 1732
Y K G W++ + + S ++ +Y ATQ +KW KAWHSWAL F +
Sbjct: 1614 YHKQGQWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHSWALANFEAVKFLEQSEE 1673
Query: 1733 GLPSVA-PQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791
+PS A Q+++ AV G+F SIA +KG +LQD LRLL LWF G V L
Sbjct: 1674 QIPSAAYEQYIIPAVKGFFKSIAL---SKG---NLQDTLRLLNLWFKFGNNSNVINTLNV 1727
Query: 1792 GFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISN 1851
G + VNI+ WL V+PQ+IARIH+++ +VR+ + LL +G++HPQAL+YPL VA KS S+
Sbjct: 1728 GISTVNIDIWLDVIPQLIARIHASSLSVRKSVHQLLSDVGRAHPQALVYPLTVAAKSQSS 1787
Query: 1852 LRRAAAQEVVDKVRQHS 1868
R+ AA ++D ++ HS
Sbjct: 1788 ARQNAALAIMDSLKTHS 1804
|
Phosphatidylinositol 3-kinase homolog required for G1 progression. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tor1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/1861 (34%), Positives = 1044/1861 (56%), Gaps = 94/1861 (5%)
Query: 38 NPKEGASLA----LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAI 93
N E LA L++ + ++L GE+ +RF + + RI L+ S+D+ E G + AI
Sbjct: 9 NKNESIQLAAADQLKEFVHSSTKELSGESLARFNNDINRRIFELIHSHDSHERFGGILAI 68
Query: 94 DELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153
+LI+ + + +S+++NY+R D + L++KVLGHLA +GG + A+ VEF+
Sbjct: 69 GKLIEFESEGDVTNLSRYANYLRMTLP-STDWHSMELSAKVLGHLAASGGTLAAEFVEFE 127
Query: 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRER 213
V+ A +WL+GDR E +R AA+LI+K +A+N+ T+ ++++E +W LRDP +RE
Sbjct: 128 VQRAFEWLQGDRQEQKRMAAILIIKALAQNSPTLVYLYISEIFQNLWTGLRDPKPLIRET 187
Query: 214 AVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273
A +AL A L V+ +RE + ++Q + + + GL R + V +HGSLLA EL +G
Sbjct: 188 AADALGASLDVVCQREAKVQLQCFNEVLLQAEHGL-RQSSVEYLHGSLLAYKELFEKSGS 246
Query: 274 FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333
F+ Y E ++ LR EHRD +R I LLP ++ + +F YL M ++L+ +R
Sbjct: 247 FIREHYTEFCDLALRLREHRDNSIRRCIVFLLPTLSEYNPKKFQQRYLDSFMVYLLSHIR 306
Query: 334 IPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLE--ALACVGNIA 390
E+ F A+G +A A++ + YL I +R+ + + R K E C+G +A
Sbjct: 307 KDKEKSLAFEAIGRIAMAVNEAMIPYLQNILKVIRDTLTAKVREKTQYEKPVFECIGMLA 366
Query: 391 RAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450
A+ + R LL ++FS LS L AL ++ +IP LL IQ+RLL+ +S +L+
Sbjct: 367 AAVKLELLEDSRSLLGLIFSCELSVHLRQALVKMAENIPPLLAPIQERLLNMVSQILTGK 426
Query: 451 HYS-QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509
++ + TP N+ + + + + LAL+TL FNF G+ L+ F ++SV+
Sbjct: 427 NFEIRTNDTYTPSFTNIYSAREPDQRSKSTESIILALETLGTFNFTGYSLISFIQESVLS 486
Query: 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAA 569
YL++++ R AA CC++ A +T + E++EKLL
Sbjct: 487 YLENDNSEIRIAAARTCCQVFARD-----------PICRKTNPLAVESVAEVLEKLLTLG 535
Query: 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629
+AD+D +R ++ S L + FD LA D + +F ALNDE F +RE AI + GRL+
Sbjct: 536 IADSDPKIRETVLSLL--DERFDRHLAHPDNIRCLFIALNDEVFSIREIAIIIIGRLALY 593
Query: 630 NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALV 689
NPA+V+P+LR+ +IQLL+ +E S +++ +EESA+LL L+ LI+PYI I ++
Sbjct: 594 NPAHVMPSLRKTIIQLLSDMEYS-GNSRQKEESAQLLKLLVSKARTLIKPYIQSIIHVIL 652
Query: 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKRE 748
+ + + G+ S ++ +G+LA V G M + M LI+ L D ++ KR
Sbjct: 653 PK-----AADTSPGVSSAIISALGELASVEGEDMPVDVRGSFMKLILVNLQDQSSTLKRL 707
Query: 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808
++ L ++ +GYVI PY +YP LLG L+ +L E RREVL+ LG++GALDP+
Sbjct: 708 ASLKCLRKLCGRSGYVIQPYLDYPPLLGALIGILQSEQPTPIRREVLRTLGVLGALDPYT 767
Query: 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD 868
+ +++S +S + H P + +PS Y+ VA+ +L+ IL+D
Sbjct: 768 YLTTEEVSDD-----LQSSHNNAHGVP--QISAAQYPSLEN----YAMVAVVTLIGILKD 816
Query: 869 PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928
SL+ +H VV ++M I MG +LP+V+P +++ ++ +L TL S
Sbjct: 817 SSLSMHHSSVVQAVMHICSQMGSKSTVFLPQVVPTFLQVMQSLSASSAEFYFQQLTTLTS 876
Query: 929 IVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988
I+ +IR Y+ ++F+L W S T L +L L+ + +AL DEF+ +LP I
Sbjct: 877 IIGPNIRDYVSDIFNLSKVFWES-------TTSLLLVILELIDAIAIALQDEFKFYLPQI 929
Query: 989 LPCCIQVLS-DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDA-PVDIR 1046
L C ++ S D +Y +L + +FG ++E+MHL+LP +IR F+ D P+ R
Sbjct: 930 LSCMLKAFSLDNTSSRSVSY--KVLQSFVIFGSNIEEYMHLVLPVIIRSFERDTIPLGFR 987
Query: 1047 RAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIF 1106
++A++ + +L V + H S ++H L +L N +LR +D LC + LG D++IF
Sbjct: 988 KSALKCIAQLFQSVNFSDHASRIIHPLVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIF 1047
Query: 1107 IPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSD 1166
IP ++K+L+ H++ H +E + RL + EPL ++ R + P + D
Sbjct: 1048 IPMVNKVLVSHKISHPAYELLVSRLLKGEPLP-KDVVVKEFKPRPSTK----PFSTQDEV 1102
Query: 1167 PYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVG 1226
+ D ++SQ+ T++DW +W+R +SIELLKESPS ALR+C+ LA + +
Sbjct: 1103 LTKLPVDQASLKAAWESSQKLTRDDWQDWIRRISIELLKESPSSALRSCSTLAGIYHPLA 1162
Query: 1227 RELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPI 1286
R+LF F+SCW +L +++K+LV+S+E+A ++PNI EIL TLLNLAE+ME ++ LPI
Sbjct: 1163 RDLFNVSFLSCWDELTESNKKNLVKSIELAMNAPNISVEILQTLLNLAEYMEREDHTLPI 1222
Query: 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVG 1346
I+++ A A KC +AKALHY E++F + ++ +E+LI INN L Q +AAVG
Sbjct: 1223 PIKVISAHASKCNVYAKALHYTELQFVQETKEEVS---ISTIESLITINNHLQQSDAAVG 1279
Query: 1347 ILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406
+L Y ++ LKE+WYEKL RWDDAL AY ++ + + E +G++RC AL
Sbjct: 1280 MLQYTKEHKQFSLKETWYEKLHRWDDALAAYEHREREGDSS---FEINIGKLRCYYALGD 1336
Query: 1407 WEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGN 1466
W+ L+ L ++ W +E R +AP+AA AAW +G+W+ ++EYVS +D + K
Sbjct: 1337 WDHLSELAQKAWVTSEQEHREAIAPLAAAAAWGLGQWNLISEYVSAMDRDPQDK-EFFSA 1395
Query: 1467 TAANGDGSSNGTF-----FRAVLLVRRGKVL-ESYERAYSNMVRVQQLSELEEVIDYCTL 1520
+A G N + R +L+ ++ ESY RAY MV+ Q LSELEE+IDY
Sbjct: 1396 ISAVHLGQYNKAYGHIERHRDILVNDLSSIIGESYNRAYGIMVKSQMLSELEEIIDY--- 1452
Query: 1521 PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCR 1580
N E ++ W +R++G ++NV+VW L RALVL P + E W+K A LCR
Sbjct: 1453 -KKNMQYENNLDSLKKTWRKRLEGCQKNVDVWHNTLRFRALVLSPQDSPEMWIKLADLCR 1511
Query: 1581 KSGRISQARSTLVKLLQYDPETSH--ENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638
+S R+ + L L+ DP ++ ++++ P V+Y YLKY W+ + + A +
Sbjct: 1512 RSDRLKLSNQCLTYLMGRDPSNAYPLDSLKLLN-PHVVYTYLKYLWATDQ---KNIAVSE 1567
Query: 1639 LQTLAMELSSCPVIQSAASTSLT------TATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692
L+ LSS + S+ L + +S +AR + KLG WK++L ++ E
Sbjct: 1568 LEEFTSYLSSKHGYKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQE 1627
Query: 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY--TLRGLP-SVAPQFVVHAVTGY 1749
S+ +I+ Y AT W KAWHSWAL N V+ +Y T G+ + Q++V A+ G+
Sbjct: 1628 SVRDILNCYFYATLFDKSWYKAWHSWALANFEVVGYYEQTEHGVTQDMYEQYIVPAIKGF 1687
Query: 1750 FHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809
FHS +SLQDILRLL LWF G +V A+ +GF++V ++TWL V+PQ+I
Sbjct: 1688 FHSSVL-----NQKNSLQDILRLLNLWFKFGEHSDVAAAIVEGFSNVPMDTWLEVIPQLI 1742
Query: 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1869
ARIH+++ +VR + LL IG+ HPQAL+Y L V+ KS + ++ +A+ ++D + HS
Sbjct: 1743 ARIHTSSSSVRASVHQLLSDIGRVHPQALVYSLTVSSKSTNPQQKHSAKSIMDSMLSHSD 1802
Query: 1870 T 1870
T
Sbjct: 1803 T 1803
|
Phosphatidylinositol 3-kinase homolog required for G1 progression and entry into stationary phase. Also required for the onset of meiosis and sporulation under nitrogen and carbon starvation conditions. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 7 |
| >sp|P32600|TOR2_YEAST Serine/threonine-protein kinase TOR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/1921 (34%), Positives = 1030/1921 (53%), Gaps = 167/1921 (8%)
Query: 39 PKEGASLA--LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL 96
P+E AS A L + AR++ E F RF + L ++I L+ ++E +G + A+D L
Sbjct: 98 PQERASGANELSTTLTSLAREVSAEQFQRFSNSLNNKIFELIHGFTSSEKIGGILAVDTL 157
Query: 97 IDVALG--ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV 154
I L E ++ S+ +NY+R + D E++ LA+ LG L GG +T+D VEF+V
Sbjct: 158 ISFYLSTEELPNQTSRLANYLRVLIP-SSDIEVMRLAANTLGRLTVPGGTLTSDFVEFEV 216
Query: 155 KMALDWL--------RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206
+ +DWL ++EYRR AA+LI+K +A+N+ + +V +D IWV LRD
Sbjct: 217 RTCIDWLTLTADNNSSSSKLEYRRHAALLIIKALADNSPYLLYPYVNSILDNIWVPLRDA 276
Query: 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266
L +R A AL CL +I+ R+ QW+ R+F+ GL N S+H +LL E
Sbjct: 277 KLIIRLDAAVALGKCLTIIQDRDPALGKQWFQRLFQGCTHGLSLNTN-DSVHATLLVFRE 335
Query: 267 LLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326
LL ++ +Y ++ + ++Y E++ ++R + ++LP +A F F YL M
Sbjct: 336 LLSLKAPYLRDKYDDIYKSTMKYKEYKFDVIRREVYAILPLLAAFDPAIFTKKYLDRIMV 395
Query: 327 HILTVLR-----IPAERDSGFI--ALGEMAGALDGELFHYLPTITSHLREAIAPR---RG 376
H L L+ D FI ++G++A + + Y+ I ++RE + + R
Sbjct: 396 HYLRYLKNIDMNAANNSDKPFILVSIGDIAFEVGSSISPYMTLILDNIREGLRTKFKVRK 455
Query: 377 KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+ + C+G +A A+GP H+ + LL++M + +S + + L + IPSL T+
Sbjct: 456 QFEKDLFYCIGKLACALGPAFAKHLNKDLLNLMLNCPMSDHMQETLMILNEKIPSLESTV 515
Query: 436 QDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS------------APVQ 483
R+L+ +S LS + Q+ N +I + N S Q
Sbjct: 516 NSRILNLLSISLSGEKFIQSNQYDF---NNQFSIEKARKSRNQSFMKKTGESNDDITDAQ 572
Query: 484 LALQTLARFNFKGHD--LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541
+ +Q H L EF R + Y++ ED + RK AAL C L
Sbjct: 573 ILIQCFKMLQLIHHQYSLTEFVRLITISYIEHEDSSVRKLAALTSCDLFIKD-------- 624
Query: 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL 601
+T + E++ KLL+ A+ D +R I L N FD LAQ D L
Sbjct: 625 ---DICKQTSVHALHSVSEVLSKLLMIAITDPVAEIRLEILQHLGSN--FDPQLAQPDNL 679
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
+F ALNDE F ++ AI + GRLS NPAYV+P+LR+ L++LLT L+ S+ K +EE
Sbjct: 680 RLLFMALNDEIFGIQLEAIKIIGRLSSVNPAYVVPSLRKTLLELLTQLKFSNMPKK-KEE 738
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721
SA LL LI + + + +PYI PI ++ + + A++ + S L +G+L+ VGG
Sbjct: 739 SATLLCTLINSSDEVAKPYIDPILDVILPKCQD-----ASSAVASTALKVLGELSVVGGK 793
Query: 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781
M +Y+ ELMPLI+ D + KR+ A++TLGQ+ S+GYV+ P +YP+LLG+L+ +
Sbjct: 794 EMTRYLKELMPLIINTFQDQSNSFKRDAALTTLGQLAASSGYVVGPLLDYPELLGILINI 853
Query: 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841
L E RR ++++GI+GALDP+ H+ + S S V + A P + +
Sbjct: 854 LKTENNPHIRRGTVRLIGILGALDPYKHREIEVTSNSKSSVEQNA--------PSIDIAL 905
Query: 842 DLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVL 901
+ ++++YY TV I++LM+IL DPSL+ +H + ++M IF+++GL CV +L +++
Sbjct: 906 LMQGVSPSNDEYYPTVVIHNLMKILNDPSLSIHHTAAIQAIMHIFQNLGLRCVSFLDQII 965
Query: 902 PDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTY 961
P + +R+C D+ +LG+L+SIV+QHIR ++++++ +I E + L T
Sbjct: 966 PGIILVMRSCPPSQLDFYFQQLGSLISIVKQHIRPHVEKIYGVIREFFPIIKLQIT---- 1021
Query: 962 RGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021
++ +++ + AL EF+ +P L + +L + ++ N + IL +L FG
Sbjct: 1022 ----IISVIESISKALEGEFKRFVPETLTFFLDILEN-DQSNKRIVPIRILKSLVTFGPN 1076
Query: 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKN 1081
L+++ HL++P ++R+ + A +++ +I TL RL + ++ S +V L +L+ +
Sbjct: 1077 LEDYSHLIMPIVVRMTEYSAG-SLKKISIITLGRLAKNINLSEMSSRIVQALVRILNNGD 1135
Query: 1082 DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGS 1141
EL K ++ L L LG DF +F+P I+K LL++R++H ++++ +L E L
Sbjct: 1136 RELTKATMNTLSLLLLQLGTDFVVFVPVINKALLRNRIQHSVYDQLVNKLLNNECL---- 1191
Query: 1142 TAAQQLSRRVPVEVISDPLNDV-DSDPYEDGTDAQKQLRGHQ-------ASQRSTKEDWA 1193
P +I D N+V + YED K SQ+ TKEDW
Sbjct: 1192 ----------PTNIIFDKENEVPERKNYEDEMQVTKLPVNQNILKNAWYCSQQKTKEDWQ 1241
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EW+R LSI+LLKESPS LR+C+ L + + RELF A F SCW +L + Q+ L+Q+L
Sbjct: 1242 EWIRRLSIQLLKESPSACLRSCSSLVSVYYPLARELFNASFSSCWVELQTSYQEDLIQAL 1301
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
A SS PPEI LLNL EFMEHD+KPLPI I LG A+KC AFAKALHYKE+EF
Sbjct: 1302 CKALSSSENPPEIYQMLLNLVEFMEHDDKPLPIPIHTLGKYAQKCHAFAKALHYKEVEFL 1361
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
N + +EALI INNQLHQ ++A+GIL +AQ+ ++QLKE+WYEKLQRW+DA
Sbjct: 1362 EEPKN-------STIEALISINNQLHQTDSAIGILKHAQQHNELQLKETWYEKLQRWEDA 1414
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
L AY K + + +E +G++R L AL WEEL+ L E W A+P + MAP+A
Sbjct: 1415 LAAYNEKEAAGEDS---VEVMMGKLRSLYALGEWEELSKLASEKWGTAKPEVKKAMAPLA 1471
Query: 1434 ANAAWNMGEWDQMAEYVS--RLDDGDESKLRGLGNTAANGDGSSNGTFFRAV-LLVRRGK 1490
A AAW + +WD++A+Y S + D+ + N + F A LLV
Sbjct: 1472 AGAAWGLEQWDEIAQYTSVMKSQSPDKEFYDAILCLHRNNFKKAEVHIFNARDLLVTELS 1531
Query: 1491 VL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRN 1548
L ESY RAY+ +VR Q ++ELEE+I Y LP + +R +R W R+ G ++N
Sbjct: 1532 ALVNESYNRAYNVVVRAQIIAELEEIIKYKKLPQNS----DKRLTMRETWNTRLLGCQKN 1587
Query: 1549 VEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608
++VWQ +L VR+LV+ P ED + +KFA+LCRKSGR++ A+ L LL+ + H N
Sbjct: 1588 IDVWQRILRVRSLVIKPKEDAQVRIKFANLCRKSGRMALAKKVLNTLLEETDDPDHPNTA 1647
Query: 1609 YHGPPQVMYAYLKYQWSLG-EDLKRKEAFARLQTLAMELSSCP---VIQSAASTS--LTT 1662
PP V+YA LKY W+ G +D K+ +A +L P + QS S +
Sbjct: 1648 KASPP-VVYAQLKYLWATGLQDEALKQLINFTSRMAHDLGLDPNNMIAQSVPQQSKRVPR 1706
Query: 1663 ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722
L+AR +LK G W+ L P + I+ +Y AT W KAWH+WAL N
Sbjct: 1707 HVEDYTKLLARCFLKQGEWRVCLQPKWRLSNPDSILGSYLLATHFDNTWYKAWHNWALAN 1766
Query: 1723 TAVMSHYTL---------------------RGLPSVAP--------------QFVVHAVT 1747
V+S T G+ V + V+ A+
Sbjct: 1767 FEVISMLTSVSKKKQEGSDASSVTDINEFDNGMIGVNTFDAKEVHYSSNLIHRHVIPAIK 1826
Query: 1748 GYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQ 1807
G+FHSI+ + + SLQD LRLLTLWF G E A+ +GF + I TWL VLPQ
Sbjct: 1827 GFFHSISLSESS-----SLQDALRLLTLWFTFGGIPEATQAMHEGFNLIQIGTWLEVLPQ 1881
Query: 1808 IIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQH 1867
+I+RIH N+ V + SLL +G++HPQAL+YPL+VA KS S R+ AA +++K+R H
Sbjct: 1882 LISRIHQPNQIVSRSLLSLLSDLGKAHPQALVYPLMVAIKSESLSRQKAALSIIEKMRIH 1941
Query: 1868 S 1868
S
Sbjct: 1942 S 1942
|
Phosphatidylinositol 3-kinase homolog, component of both TORC1 and TORC2. TORC1 regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. TORC2 regulates cell cycle-dependent polarization of the actin-cytoskeleton, cell wall integrity, and receptor endocytosis. TORC2 controls polarity of the actin cytoskeleton, which is required for orienting the secretory pathway toward discrete growth sites, via the RHO1/PKC1/MAPK cell integrity pathway by activating the RHO1 guanine nucleotide exchange factor ROM2. TORC2 phosphorylates the AGC kinase YPK2, an upstream effector of the cell integrity pathway. TORC2 negatively regulates calcineurin-dependent stress signaling via phosphorylation of its effector SLM1-SLM2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P35169|TOR1_YEAST Serine/threonine-protein kinase TOR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 989 bits (2556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/1946 (33%), Positives = 1036/1946 (53%), Gaps = 183/1946 (9%)
Query: 26 LNRILADLCT-HGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAA 84
L +I +L + + ++ AS++L + +L E F + + ++I L+ + +
Sbjct: 74 LEKIFRELTSDYKEERKLASISLFDLLVSLEHELSIEEFQAVSNDINNKILELVHTKKTS 133
Query: 85 ENLGALRAIDELIDV-ALGEN-ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142
+GA+ +ID LI A E ++ S+ + Y+R + D E++ LA+K LG LA G
Sbjct: 134 TRVGAVLSIDTLISFYAYTERLPNETSRLAGYLRGLIP-SNDVEVMRLAAKTLGKLAVPG 192
Query: 143 GAMTADEVEFQVKMALDWLRGD---------RVEYRRFAAVLILKEMAENASTVFNVHVA 193
G T+D VEF++K L+WL + ++ + AA+LI+ +AEN + ++
Sbjct: 193 GTYTSDFVEFEIKSCLEWLTASTEKNSFSSSKPDHAKHAALLIITALAENCPYLLYQYLN 252
Query: 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253
+D IW ALRDP L +R A L CL + R+ + QW R+ + + G N
Sbjct: 253 SILDNIWRALRDPHLVIRIDASITLAKCLSTLRNRDPQLTSQWVQRLATSCEYGFQVNT- 311
Query: 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313
+ IH SLL E+L F+ + ++ + Y H+ +++R I ++P +A F
Sbjct: 312 LECIHASLLVYKEILFLKDPFLNQVFDQMCLNCIAYENHKAKMIREKIYQIVPLLASFNP 371
Query: 314 DRFVTNYLKICMNHILTVL------RIPAERDSG---FIALGEMAGALDGELFHYLPTIT 364
F YL M++ L +L +IP +D I++G++A + ++ Y+ I
Sbjct: 372 QLFAGKYLHQIMDNYLEILTNAPANKIPHLKDDKPQILISIGDIAYEVGPDIAPYVKQIL 431
Query: 365 SHLREAIAPR---RGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDA 420
++ + + R K E C+G +A +GPV+ + R +LD+MF LS + +
Sbjct: 432 DYIEHDLQTKFKFRKKFENEIFYCIGRLAVPLGPVLGKLLNRNILDLMFKCPLSDYMQET 491
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQ-ARPAATPI----------RGNVMNI 469
+ +T IPSL P I D LL+ + LS + + Q P P N++
Sbjct: 492 FQILTERIPSLGPKINDELLNLVCSTLSGTPFIQPGSPMEIPSFSRERAREWRNKNILQK 551
Query: 470 PQQVSDLNGSAPVQLALQTLARF-NFKGH-DLLEFARDSVVLYLDDEDKATRKDAALCCC 527
+ +D N +++ +Q N K L+EF R + Y++ D RK AAL C
Sbjct: 552 TGESNDDNND--IKIIIQAFRMLKNIKSRFSLVEFVRIVALSYIEHTDPRVRKLAALTSC 609
Query: 528 KLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587
++ + +T + E++ KLL +AD +R + +L
Sbjct: 610 EIYVKD-----------NICKQTSLHSLNTVSEVLSKLLAITIADPLQDIRLEVLKNL-- 656
Query: 588 NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT 647
N FD LAQ D L +F AL+DE F+++ A+ + GRLS NPAYV+P++R+ L++LLT
Sbjct: 657 NPCFDPQLAQPDNLRLLFTALHDESFNIQSVAMELVGRLSSVNPAYVIPSIRKILLELLT 716
Query: 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISG 707
L+ S++ + +EE+A LL LIR+ + + +PYI P+ L+ + + + A S
Sbjct: 717 KLKFSTSSRE-KEETASLLCTLIRSSKDVAKPYIEPLLNVLLPKFQDTSSTVA-----ST 770
Query: 708 VLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITP 767
L T+G+L+ VGG M+ Y+ +L PLI++ D + KRE A+ LGQ+ S+GYVI P
Sbjct: 771 ALRTIGELSVVGGEDMKIYLKDLFPLIIKTFQDQSNSFKREAALKALGQLAASSGYVIDP 830
Query: 768 YNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827
+YP+LLG+L+ +L E + RR+ + ++GI+GA+DP+ K EVT
Sbjct: 831 LLDYPELLGILVNILKTENSQNIRRQTVTLIGILGAIDPYRQKER--------EVTSTTD 882
Query: 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887
S + P + + + ++++YY+TV I+ L++IL+DPSL+SYH V+ ++M IF+
Sbjct: 883 ISTEQNAPPIDIALLMQGMSPSNDEYYTTVVIHCLLKILKDPSLSSYHTAVIQAIMHIFQ 942
Query: 888 SMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISE 947
++GL CV +L +++P + +RTC L ++ +L +L+ IVRQHIR ++ +F I +
Sbjct: 943 TLGLKCVSFLDQIIPTILDVMRTCSQSLLEFYFQQLCSLIIIVRQHIRPHVDSIFQAIKD 1002
Query: 948 LWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTY 1007
S L T ++ +++ + AL EF+ +P+ L + +L + ++ +D
Sbjct: 1003 FSSVAKLQIT--------LVSVIEAISKALEGEFKRLVPLTLTLFLVILEN-DKSSDKVL 1053
Query: 1008 VLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHIS 1067
+L LE FG L+ + HL+ P ++++ + + +++R+AI T+ +L V + S
Sbjct: 1054 SRRVLRLLESFGPNLEGYSHLITPKIVQMAEFTSG-NLQRSAIITIGKLAKDVDLFEMSS 1112
Query: 1068 SLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEE 1126
+VH L VL +DEL K ++ L L +G F IFIP I+++L+K ++H +++
Sbjct: 1113 RIVHSLLRVLSSTTSDELSKVIMNTLSLLLIQMGTSFAIFIPVINEVLMKKHIQHTIYDD 1172
Query: 1127 IEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYE--DGTDA--------QK 1176
+ R+ + L P +++ N D P E + DA Q
Sbjct: 1173 LTNRILNNDVL--------------PTKILE--ANTTDYKPAEQMEAADAGVAKLPINQS 1216
Query: 1177 QLRGH-QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFV 1235
L+ +SQ+ TKEDW EW + LSI+LLKESPS ALR C+ LA + + +ELF F
Sbjct: 1217 VLKSAWNSSQQRTKEDWQEWSKRLSIQLLKESPSHALRACSNLASMYYPLAKELFNTAFA 1276
Query: 1236 SCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA 1295
W++L + Q+ L+ SL +A SSP PPEI TLLNL EFMEHD+K LPI + LG A
Sbjct: 1277 CVWTELYSQYQEDLIGSLCIALSSPLNPPEIHQTLLNLVEFMEHDDKALPIPTQSLGEYA 1336
Query: 1296 EKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL 1355
E+C A+AKALHYKE++F N + +E+LI INNQL+Q +AA+GIL +AQ+
Sbjct: 1337 ERCHAYAKALHYKEIKFIKEPEN-------STIESLISINNQLNQTDAAIGILKHAQQHH 1389
Query: 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415
+QLKE+W+EKL+RW+DAL AY N+ +A + + TLG+MR L AL WE+L+ L
Sbjct: 1390 SLQLKETWFEKLERWEDALHAY-NEREKAGDTSV--SVTLGKMRSLHALGEWEQLSQLAA 1446
Query: 1416 EYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL--DDGDESKLRGLGNTAANG-D 1472
W ++ + +AP+AA AAW +GEWD + +Y+S + D+ + N D
Sbjct: 1447 RKWKVSKLQTKKLIAPLAAGAAWGLGEWDMLEQYISVMKPKSPDKEFFDAILYLHKNDYD 1506
Query: 1473 GSSNGTFFRAVLLVRRGKVL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGR 1530
+S LLV L ESY RAYS +VR Q ++E EE+I Y LP P +E +
Sbjct: 1507 NASKHILNARDLLVTEISALINESYNRAYSVIVRTQIITEFEEIIKYKQLP---PNSE-K 1562
Query: 1531 RAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARS 1590
+ +N+WT+R+ G ++NV++WQ +L VR+LV+ P +D++ W+KFA+LCRKSGR+ A
Sbjct: 1563 KLHYQNLWTKRLLGCQKNVDLWQRVLRVRSLVIKPKQDLQIWIKFANLCRKSGRMRLANK 1622
Query: 1591 TLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL----QTLAMEL 1646
L LL+ + S N + PP V+YA LKY W+ G KEA L LA +L
Sbjct: 1623 ALNMLLEGGNDPSLPNT-FKAPPPVVYAQLKYIWATG---AYKEALNHLIGFTSRLAHDL 1678
Query: 1647 SSCPVIQSAASTSLTTATST-----NVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
P A S L++A++ L+AR +LK G W+ A P + + I+ +Y
Sbjct: 1679 GLDPNNMIAQSVKLSSASTAPYVEEYTKLLARCFLKQGEWRIATQPNWRNTNPDAILGSY 1738
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMS---------------------------------- 1727
AT W KAWH+WAL N V+S
Sbjct: 1739 LLATHFDKNWYKAWHNWALANFEVISMVQEETKLNGGKNDDDDDTAVNNDNVRIDGSILG 1798
Query: 1728 --HYTLRG--LP-SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGAT 1782
T+ G P + + VV A+ G+FHSI+ + LQD LRLLTL FN G
Sbjct: 1799 SGSLTINGNRYPLELIQRHVVPAIKGFFHSISLLETS-----CLQDTLRLLTLLFNFGGI 1853
Query: 1783 EEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPL 1842
+EV A+ +GF + I WL VLPQ+I+RIH + V + SLL +G++HPQAL+YPL
Sbjct: 1854 KEVSQAMYEGFNLMKIENWLEVLPQLISRIHQPDPTVSNSLLSLLSDLGKAHPQALVYPL 1913
Query: 1843 LVACKSISNLRRAAAQEVVDKVRQHS 1868
VA KS S R+ AA +++K+R HS
Sbjct: 1914 TVAIKSESVSRQKAALSIIEKIRIHS 1939
|
Phosphatidylinositol 3-kinase homolog, component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. TORC1 controls many of these processes via TIP41-TAP42-mediated inhibition of the type 2A-related phosphatases PP2A and SIT4. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9VK45|TOR_DROME Target of rapamycin OS=Drosophila melanogaster GN=Tor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/1990 (33%), Positives = 1010/1990 (50%), Gaps = 241/1990 (12%)
Query: 38 NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97
N + A+ L +++ + R++ E ++F D+ I ++ + D E G A+ LI
Sbjct: 20 NVQNKATQDLLFYVKTELREMSQEELAQFFDEFDHHIFTMVNATDINEKKGGALAMKCLI 79
Query: 98 DVALGENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKM 156
+ A K +S + N +R + + D ++ +A++ L LA + AD +F +K
Sbjct: 80 NCEGSLTARKGISPYLNRLRDLLLIN-DVSVMEIAARSLVKLANMPTSKGADSFDFDIKK 138
Query: 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE 216
A + LRG+R EYRR +AV IL+E+A T F H+ F + I+ A+ DP A+RE A E
Sbjct: 139 AFEVLRGERQEYRRHSAVFILRELAIALPTYFYQHILTFFEVIFNAIFDPKPAIRESAGE 198
Query: 217 ALRACLRVIEKRETRWRV---QWYYRMFEAT-------------QDGLGRNAPVHSIHGS 260
ALRA L V +RE+ + QWY ++ Q G+ R+ IHG
Sbjct: 199 ALRAALIVTAQRESTKQSSEPQWYRICYDEANGSFNADLGSSKDQKGVTRD---DRIHGG 255
Query: 261 LLAVGELLRNTGEFMMSRYREVAEIVL-----RYLEHRDRLVRLS-ITSLLPRI------ 308
L+ EL R RY + + ++LE S + +L+PR+
Sbjct: 256 LVVFNELFRCANATWERRYTSLKTLFPKTQHNKFLEASSSSSMGSQLNTLVPRLKVPFID 315
Query: 309 ----------------------------AHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
+ + ++ +Y IC N +
Sbjct: 316 KLGSTQTHLGEGEHHKGVAKFASHNVLESAYAQEILQEHYTSICDNVLEQRTSKSPYVQQ 375
Query: 341 GFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALA--CVGNIARAMGPV 396
+ + A + +F YL T SHL + + RGK +A +G +A A+
Sbjct: 376 ALLQILPRLAAFNRAVFVEKYLQTCVSHLMQIL---RGKEKDRTVAYITIGYMAVAVQSA 432
Query: 397 MEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQDRLLDCISFVLSKSH 451
+E H+ ++ + A S L + + I L ++ + D + +L +
Sbjct: 433 IEVHLSSIMTSVKVALPSKDLTSKRKVPVDPAVFACITLLAHAVKSEIADDVKDILEQMF 492
Query: 452 YSQARPAATP-IRGNVMNIPQQVSDL---------------------------------- 476
Y+ PA T +R N+PQ S +
Sbjct: 493 YTGLSPALTVCLRELSENVPQLKSAITEGLIGILSQVLMNKAAILPYTALPTIAIDGSLM 552
Query: 477 -NGS-APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534
NG A LAL+TL FNF+ ++L+F + ++ E + R +A C +L+ +
Sbjct: 553 QNGDGATTVLALKTLGTFNFEEQNMLDFVQRCADYFIVHEQQEIRLEAVQTCTRLLKLAV 612
Query: 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594
+S S + ++E+LL+ A+ D D VR I SL + FD
Sbjct: 613 Q--------SSESMENSKTLSDTVSHVIERLLMVAITDMDCNVRIRILRSL--DETFDGK 662
Query: 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654
LAQ + L+++F L+DE F++RE A+ GRLS NPAYV+P LR +I+L+T L+ S
Sbjct: 663 LAQPESLNSLFITLHDEIFEIRELAMVTIGRLSSINPAYVMPKLRTTMIELITDLKYSGM 722
Query: 655 DNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714
++ +E+SAK+L L+ + RLI Y+ PI KALV +L E +N G+I VL T+GD
Sbjct: 723 -SRNKEQSAKMLDHLVISTPRLISSYMNPILKALVPKLHEP---ESNPGVILNVLRTIGD 778
Query: 715 LARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772
LA V G M + +L+ +++E L D + KR VA+ TLGQ++ +TG V+TPY++YP
Sbjct: 779 LAEVNGGSDEMELWADDLLSILLEMLGDAGSPDKRGVALWTLGQLISATGRVVTPYHKYP 838
Query: 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQH 832
L+ +L+ L E S RRE ++VLG++GA+DP+ HK N+ L S + A G+
Sbjct: 839 VLIDILINFLKTEQRRSIRRETIRVLGLLGAMDPYKHKMNKGLIDSQKDNVLIAYSDGKV 898
Query: 833 IQPMDEFPMDLWPSFATS-EDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL 891
+ D +L + + ++YY VAI +LMRILRDP+L++ H VV ++ FIF+S+G+
Sbjct: 899 DESQDISTAELLVNMGNALDEYYPAVAIAALMRILRDPTLSTRHTSVVQAVTFIFQSLGI 958
Query: 892 GCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951
CVPYL +VLP+L VRT D+ L++++ +L LV+ V+ HI Y+ ++F LI E W +
Sbjct: 959 KCVPYLAQVLPNLLDNVRTADNNLREFLFQQLAILVAFVKLHIISYMGDIFKLIKEFW-T 1017
Query: 952 FSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDI 1011
+ P N +++L++Q+ +AL EFR +L ++P ++VL + D +
Sbjct: 1018 INTPLQN------TLINLIEQIAVALGCEFRDYLAELIPQILRVLQH-DNSKDRMVTRRL 1070
Query: 1012 LHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRVQVTGHISSLV 1070
L L+ FG TL ++ L+LP +++LF P + A+ET+ L ++ T S ++
Sbjct: 1071 LQALQKFGSTLGYYLPLILPPIVKLFDSPYVPQQVSMVALETINNLACQLDFTDFSSRII 1130
Query: 1071 HHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR 1130
H L VLD + ELR A+ L LA LG+ + +F+P + + L KHR+ E+EE+ +
Sbjct: 1131 HPLVRVLDAE-PELRDQAMTTLRSLAKQLGKKYLVFVPMVQRTLNKHRIVDPEYEELLSK 1189
Query: 1131 LRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
++ L A + R + + D +S+ + Q ++R +K+
Sbjct: 1190 IKSCSTLADSYGAGESELRPSRFKNNEPFVTDRNSNNKNLQVTTNELRTAWQVTRRVSKD 1249
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW++ LSI LLKESPS ALR C LAQ + R+LF A F+SCW++L+ + L
Sbjct: 1250 DWVEWLKRLSIGLLKESPSHALRACRSLAQEYDTLLRDLFNAAFISCWTELSPDLKNELT 1309
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEH-DEKPLPIDIRLLGALAEKCRAFAKALHYKE 1309
QSL A ++ PEI T+LNLAEFMEH D P+PI+ +LLG A CRA+AKAL YKE
Sbjct: 1310 QSLIQALQVTDM-PEITQTILNLAEFMEHCDRDPIPIETKLLGTRAMACRAYAKALRYKE 1368
Query: 1310 MEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILT---YAQKELDVQLKESWYEK 1366
EF R D+ V E+LI INN+L Q EAA G+LT A EL+VQ + WYEK
Sbjct: 1369 EEF----LLREDSQ---VFESLILINNKLQQREAAEGLLTRYRNAANELNVQGR--WYEK 1419
Query: 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR 1426
L WD+AL+ Y S+ LEA LG MRCL AL W EL+N+ K W A+
Sbjct: 1420 LHNWDEALEHYERNLKTDSSD---LEARLGHMRCLEALGDWSELSNVTKHEWENFGTEAK 1476
Query: 1427 LEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLV 1486
P+AA AAW + +W+ M EYV + + + +G+++RAVL V
Sbjct: 1477 SRAGPLAAVAAWGLQDWEAMREYVRCI-----------------PEDTQDGSYYRAVLAV 1519
Query: 1487 RRGKVL----------------------ESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524
ESYERAY MV VQ L+ELEEVI Y +P
Sbjct: 1520 HHDDFETAQRLIDETRDLLDTELTSMAGESYERAYGAMVCVQMLAELEEVIQYKLIP--- 1576
Query: 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGR 1584
RR ++ MW +R+QG +R VE W+ ++ V +LV+ P ED+ TWLK+ASLCRKSG
Sbjct: 1577 ----ERREPLKTMWWKRLQGGQRLVEDWRRIIQVHSLVVKPHEDIHTWLKYASLCRKSGS 1632
Query: 1585 ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL----Q 1640
+ + TLV LL DP+ + PQV YAY KY + + + +EA+ +L
Sbjct: 1633 LHLSHKTLVMLLGTDPKLNPNQPLPCNQPQVTYAYTKY---MAANNQLQEAYEQLTHFVS 1689
Query: 1641 TLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAA 1700
T + ELS P + L+AR YL++ +W+ L + ++I +
Sbjct: 1690 TYSQELSCLPP---------EALKQQDQRLMARCYLRMATWQNKLQDSIRPDAIQGALEC 1740
Query: 1701 YRNATQCATKWGKAWHSWALFNTAV-----------------MSHYTLRGLPS---VAPQ 1740
+ AT W KAWH WA N V M GL S + +
Sbjct: 1741 FEKATSYDPNWYKAWHLWAYMNFKVVQAQKSALDKQQPPGASMGMTMGSGLDSDLMIIQR 1800
Query: 1741 FVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT 1800
+ V AV G+F SI+ KG +SLQD LRLLTLWF++G EV AL G + INT
Sbjct: 1801 YAVPAVQGFFRSISL---IKG--NSLQDTLRLLTLWFDYGNHAEVYEALLSGMKLIEINT 1855
Query: 1801 WLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEV 1860
WL V+PQ+IARI ++ + V +LI LL+ IG++HPQAL+YPL VA KS S RR AA ++
Sbjct: 1856 WLQVIPQLIARIDTHRQLVGQLIHQLLMDIGKNHPQALVYPLTVASKSASLARRNAAFKI 1915
Query: 1861 VDKVRQHSGT 1870
+D +R+HS T
Sbjct: 1916 LDSMRKHSPT 1925
|
Promotes cell and tissue growth, maintains tissue homeostatis and controls responses to environmental stress and aging. Regulates growth during animal development by coupling growth factor signaling to nutrient availability. Central regulators of autophagy. May be involved in atg1 phosphorylation. May also be involved, directly or indirectly, in the control of neuronal function. Phosphorylates S6K/p70S6K, in vitro. May regulate the activity of S6K. Overexpression inhibits growth and reduces cell size. Affects the timing of neuronal cell differentiation. Hyperactivation of the signaling leads to accelerated differentiation, whereas inhibition of the signaling retards differentiation. Thus, in addition to controlling growth of the cell in which it resides, it can also influence growth of distant cells and organs during development via a humoral mechanism. In short, during development, it primarily controls growth, whereas in the adult, where there is relatively little growth, it controls aging and other aspects of nutrient-related physiology. Rag GTPases act as activators of TORC1 in response to amino acid signals. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|Q9JLN9|MTOR_MOUSE Serine/threonine-protein kinase mTOR OS=Mus musculus GN=Mtor PE=1 SV=2 | Back alignment and function description |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1528 (37%), Positives = 865/1528 (56%), Gaps = 150/1528 (9%)
Query: 269 RNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNH 327
R + M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH
Sbjct: 360 RCCRDLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNH 419
Query: 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAP------RRGKPSLE 381
+L+ ++ ER + F ALG ++ A+ E YLP + +R A+ P R+ ++
Sbjct: 420 VLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVD 479
Query: 382 A--LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRL 439
A C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD L
Sbjct: 480 ATVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGL 539
Query: 440 LDCISFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG 496
L +S VL H + A + + + SD+ A + LAL+TL F F+G
Sbjct: 540 LKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEG 596
Query: 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
H L +F R +L+ E K R +AA C +L+ S +S S++ +
Sbjct: 597 HSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAV------Q 650
Query: 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVR 616
++ +++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++R
Sbjct: 651 VVADVLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIR 708
Query: 617 EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676
E AI GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RL
Sbjct: 709 ELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRL 767
Query: 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736
IRPY+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++
Sbjct: 768 IRPYMEPILKALILKL-KDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMD 826
Query: 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796
L D + + KR+VA+ TLGQ+V STGYV+ PY +YP LL +LL L E TRRE ++
Sbjct: 827 MLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIR 886
Query: 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------SDSGQHIQPMDEFPMDLW 844
VLG++GALDP+ HK N + + + + + + + M P+D
Sbjct: 887 VLGLLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLD-- 944
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
++Y V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P
Sbjct: 945 -------EFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTF 997
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ +R CD +++++ +LG LVS V+ HIR Y+ E+ +L+ E W N + +
Sbjct: 998 LNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQST 1051
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE 1024
+L L++Q+ +AL EF+ +LP ++P ++V + + +L +++FG LD+
Sbjct: 1052 IIL-LIEQIVVALGGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDD 1109
Query: 1025 HMHLLLPALIRLFKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
++HLLLP +++LF + P+ R+AA+ET+ RL + T + S ++H + LD ++ E
Sbjct: 1110 YLHLLLPPIVKLFDAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPE 1168
Query: 1084 LRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR--------RE 1135
LR A+D L L LG+ + IFIP ++K+L++HR+ H+ ++ + R+ + +
Sbjct: 1169 LRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEED 1228
Query: 1136 PLI-----LGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
PLI L S+ L+ PVE + P+ + + + QK A++R +K+
Sbjct: 1229 PLIYQHRMLRSSQGDALASG-PVE--TGPMKKL----HVSTINLQK---AWGAARRVSKD 1278
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW+R LS+ELLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L+
Sbjct: 1279 DWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELI 1338
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEHDEK-PLPI----DIRLLGALAEKCRAFAKAL 1305
+S+E+A +S +I E+ TLLNLAEFMEH +K PLP+ I LLG A KCRA+AKAL
Sbjct: 1339 RSIELALTSQDI-AEVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKAL 1397
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWY 1364
HYKE+EF+ + A++E+LI INN+L Q EAA G+L YA K +++++ +WY
Sbjct: 1398 HYKELEFQKGPTP-------AILESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWY 1450
Query: 1365 EKLQRWDDALKAYTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEP 1423
EKL W+DAL AY K + +P E LGRMRCL AL W +L+ C E WT
Sbjct: 1451 EKLHEWEDALVAYDKKMDTNKEDP----ELMLGRMRCLEALGEWGQLHQQCCEKWTLVND 1506
Query: 1424 AARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV 1483
+ +MA MAA AAW +G+WD M EY T + +G F+RAV
Sbjct: 1507 ETQAKMARMAAAAAWGLGQWDSMEEY-----------------TCMIPRDTHDGAFYRAV 1549
Query: 1484 L------------LVRRGKVL----------ESYERAYSNMVRVQQLSELEEVIDYCTLP 1521
L + + + L ESY RAY MV LSELEEVI Y +P
Sbjct: 1550 LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVP 1609
Query: 1522 VGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRK 1581
RR IIR +W ER+QG +R VE WQ +L VR+LV+ P ED+ TWLK+ASLC K
Sbjct: 1610 -------ERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGK 1662
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641
SGR++ A TLV LL DP ++ PQV YAY+K W + ++ +AF +Q
Sbjct: 1663 SGRLALAHKTLVLLLGVDPSRQLDHPLPTAHPQVTYAYMKNMW---KSARKIDAFQHMQH 1719
Query: 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
+ Q A +T L+AR +LKLG W+ L G+++ +IP+++ Y
Sbjct: 1720 FVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLKLGEWQLNL-QGINESTIPKVLQYY 1776
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMSHY 1729
AT+ W KAWH+WA+ N + HY
Sbjct: 1777 SAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-422'. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P42346|MTOR_RAT Serine/threonine-protein kinase mTOR OS=Rattus norvegicus GN=Mtor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1528 (37%), Positives = 865/1528 (56%), Gaps = 150/1528 (9%)
Query: 269 RNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNH 327
R + M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH
Sbjct: 360 RCCRDLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNH 419
Query: 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAP------RRGKPSLE 381
+L+ ++ ER + F ALG ++ A+ E YLP + +R A+ P R+ ++
Sbjct: 420 VLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVD 479
Query: 382 A--LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRL 439
A C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD L
Sbjct: 480 ATVFTCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGL 539
Query: 440 LDCISFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG 496
L +S VL H + A + + + SD+ A + LAL+TL F F+G
Sbjct: 540 LKMLSLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEG 596
Query: 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
H L +F R +L+ E K R +AA C +L+ S +S S++ +
Sbjct: 597 HSLTQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQTAV------Q 650
Query: 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVR 616
++ +++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++R
Sbjct: 651 VVADVLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIR 708
Query: 617 EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676
E AI GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RL
Sbjct: 709 ELAICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRL 767
Query: 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736
IRPY+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++
Sbjct: 768 IRPYMEPILKALILKL-KDPDPDPNPGVINNVLATIGELAQVSGLEMRKWVDELFVIIMD 826
Query: 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796
L D + + KR+VA+ TLGQ+V STGYV+ PY +YP LL +LL L E TRRE ++
Sbjct: 827 MLQDSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIR 886
Query: 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------SDSGQHIQPMDEFPMDLW 844
VLG++GALDP+ HK N + + + + + + + M P+D
Sbjct: 887 VLGLLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLD-- 944
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
++Y V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P
Sbjct: 945 -------EFYPAVSMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTF 997
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ +R CD +++++ +LG LVS V+ HIR Y+ E+ +L+ E W N + +
Sbjct: 998 LNVIRVCDGAIREFLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQST 1051
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE 1024
+L L++Q+ +AL EF+ +LP ++P ++V + + +L +++FG LD+
Sbjct: 1052 IIL-LIEQIVVALGGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDD 1109
Query: 1025 HMHLLLPALIRLFKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
++HLLLP +++LF + P+ R+AA+ET+ RL + T + S ++H + LD ++ E
Sbjct: 1110 YLHLLLPPIVKLFDAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPE 1168
Query: 1084 LRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR--------RE 1135
LR A+D L L LG+ + IFIP ++K+L++HR+ H+ ++ + R+ + +
Sbjct: 1169 LRSTAMDTLSSLVFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEED 1228
Query: 1136 PLI-----LGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKE 1190
PLI L S+ L+ PVE + P+ + + + QK A++R +K+
Sbjct: 1229 PLIYQHRMLRSSQGDALASG-PVE--TGPMKKL----HVSTINLQK---AWGAARRVSKD 1278
Query: 1191 DWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLV 1250
DW EW+R LS+ELLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L+
Sbjct: 1279 DWLEWLRRLSLELLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELI 1338
Query: 1251 QSLEMAFSSPNIPPEILATLLNLAEFMEHDEK-PLPI----DIRLLGALAEKCRAFAKAL 1305
+S+E+A +S +I E+ TLLNLAEFMEH +K PLP+ I LLG A KCRA+AKAL
Sbjct: 1339 RSIELALTSQDI-AEVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKAL 1397
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWY 1364
HYKE+EF+ + A++E+LI INN+L Q EAA G+L YA K +++++ +WY
Sbjct: 1398 HYKELEFQKGPTP-------AILESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWY 1450
Query: 1365 EKLQRWDDALKAYTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEP 1423
EKL W+DAL AY K + +P E LGRMRCL AL W +L+ C E WT
Sbjct: 1451 EKLHEWEDALVAYDKKMDTNKDDP----ELMLGRMRCLEALGEWGQLHQQCCEKWTLVND 1506
Query: 1424 AARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV 1483
+ +MA MAA AAW +G+WD M EY T + +G F+RAV
Sbjct: 1507 ETQAKMARMAAAAAWGLGQWDSMEEY-----------------TCMIPRDTHDGAFYRAV 1549
Query: 1484 L------------LVRRGKVL----------ESYERAYSNMVRVQQLSELEEVIDYCTLP 1521
L + + + L ESY RAY MV LSELEEVI Y +P
Sbjct: 1550 LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAYGAMVSCHMLSELEEVIQYKLVP 1609
Query: 1522 VGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRK 1581
RR IIR +W ER+QG +R VE WQ +L VR+LV+ P ED+ TWLK+ASLC K
Sbjct: 1610 -------ERREIIRQIWWERLQGCQRIVEDWQKILMVRSLVVSPHEDMRTWLKYASLCGK 1662
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641
SGR++ A TLV LL DP ++ PQV YAY+K W + ++ +AF +Q
Sbjct: 1663 SGRLALAHKTLVLLLGVDPSRQLDHPLPTVHPQVTYAYMKNMW---KSARKIDAFQHMQH 1719
Query: 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAY 1701
+ Q A +T L+AR +LKLG W+ L G+++ +IP+++ Y
Sbjct: 1720 FVQTMQQQA--QHAIATEDQQHKQELHKLMARCFLKLGEWQLNL-QGINESTIPKVLQYY 1776
Query: 1702 RNATQCATKWGKAWHSWALFNTAVMSHY 1729
AT+ W KAWH+WA+ N + HY
Sbjct: 1777 SAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
Serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. Functions as part of 2 structurally and functionally distinct signaling complexes mTORC1 and mTORC2 (mTOR complex 1 and 2). Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. This includes phosphorylation of EIF4EBP1 and release of its inhibition toward the elongation initiation factor 4E (eiF4E). Moreover, phosphorylates and activates RPS6KB1 and RPS6KB2 that promote protein synthesis by modulating the activity of their downstream targets including ribosomal protein S6, eukaryotic translation initiation factor EIF4B and the inhibitor of translation initiation PDCD4. Regulates ribosome synthesis by activating RNA polymerase III-dependent transcription through phosphorylation and inhibition of MAF1 a RNA polymerase III-repressor. In parallel to protein synthesis, also regulates lipid synthesis through SREBF1/SREBP1 and LPIN1. To maintain energy homeostasis mTORC1 may also regulate mitochondrial biogenesis through regulation of PPARGC1A. mTORC1 also negatively regulates autophagy through phosphorylation of ULK1. Under nutrient sufficiency, phosphorylates ULK1 at 'Ser-757', disrupting the interaction with AMPK and preventing activation of ULK1. Also prevents autophagy through phosphorylation of the autophagy inhibitor DAP. mTORC1 exerts a feedback control on upstream growth factor signaling that includes phosphorylation and activation of GRB10 a INSR-dependent signaling suppressor. Among other potential targets mTORC1 may phosphorylate CLIP1 and regulate microtubules. As part of the mTORC2 complex MTOR may regulate other cellular processes including survival and organization of the cytoskeleton. Plays a critical role in the phosphorylation at 'Ser-473' of AKT1, a pro-survival effector of phosphoinositide 3-kinase, facilitating its activation by PDK1. mTORC2 may regulate the actin cytoskeleton, through phosphorylation of PRKCA, PXN and activation of the Rho-type guanine nucleotide exchange factors RHOA and RAC1A or RAC1B. mTORC2 also regulates the phosphorylation of SGK1 at 'Ser-421'. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1874 | ||||||
| 224060923 | 2483 | predicted protein [Populus trichocarpa] | 0.997 | 0.752 | 0.862 | 0.0 | |
| 224105777 | 2482 | predicted protein [Populus trichocarpa] | 0.997 | 0.753 | 0.856 | 0.0 | |
| 359475536 | 2469 | PREDICTED: serine/threonine-protein kina | 0.994 | 0.754 | 0.846 | 0.0 | |
| 449479024 | 2470 | PREDICTED: LOW QUALITY PROTEIN: serine/t | 0.995 | 0.755 | 0.860 | 0.0 | |
| 356539702 | 2468 | PREDICTED: serine/threonine-protein kina | 0.994 | 0.754 | 0.847 | 0.0 | |
| 356497486 | 2468 | PREDICTED: serine/threonine-protein kina | 0.994 | 0.754 | 0.848 | 0.0 | |
| 359475538 | 2442 | PREDICTED: serine/threonine-protein kina | 0.980 | 0.752 | 0.832 | 0.0 | |
| 356539704 | 2441 | PREDICTED: serine/threonine-protein kina | 0.979 | 0.752 | 0.837 | 0.0 | |
| 356497488 | 2441 | PREDICTED: serine/threonine-protein kina | 0.979 | 0.752 | 0.837 | 0.0 | |
| 297852694 | 2482 | hypothetical protein ARALYDRAFT_474140 [ | 0.995 | 0.751 | 0.818 | 0.0 |
| >gi|224060923|ref|XP_002300288.1| predicted protein [Populus trichocarpa] gi|222847546|gb|EEE85093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3315 bits (8595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1644/1907 (86%), Positives = 1747/1907 (91%), Gaps = 38/1907 (1%)
Query: 1 MASTSQSLRY-IGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLG 59
MASTSQSLR+ +GP GGGS DALNRILADLCT GNPKEGA+LALRKH+EE+ARD+
Sbjct: 1 MASTSQSLRFLVGPATTAPGGGSFDALNRILADLCTRGNPKEGATLALRKHLEEEARDIS 60
Query: 60 GEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVF 119
GEAF RFMD LY+RIS LLESN+ AENLGALRA DELIDVALGENASKVSKF+ YMR+VF
Sbjct: 61 GEAFPRFMDHLYERISSLLESNEVAENLGALRATDELIDVALGENASKVSKFAIYMRSVF 120
Query: 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179
EVKRD E+L AS+VLGHLARAGGAMTADEVEFQVKMALDWL D+ E+R FAAVLILKE
Sbjct: 121 EVKRDPEVLTHASRVLGHLARAGGAMTADEVEFQVKMALDWLHNDKAEFRLFAAVLILKE 180
Query: 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYR 239
+AENASTVFNVHV EFVDAIWVALR PTLA+RERAVEALRACLRVIEKRETRWRVQWYYR
Sbjct: 181 VAENASTVFNVHVPEFVDAIWVALRHPTLAIRERAVEALRACLRVIEKRETRWRVQWYYR 240
Query: 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVR 298
MFEATQDGLG+NAPVHSIHGSLLAVGELLR NTGEFMMSRYREVA+IVLRYLEHRDRLVR
Sbjct: 241 MFEATQDGLGKNAPVHSIHGSLLAVGELLRLNTGEFMMSRYREVADIVLRYLEHRDRLVR 300
Query: 299 LSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358
LSITSLLPRIAHFLRDRFVTNYL+ICMNHIL VLRIPAER SGFIALGEMAGALDGEL H
Sbjct: 301 LSITSLLPRIAHFLRDRFVTNYLEICMNHILAVLRIPAERGSGFIALGEMAGALDGELEH 360
Query: 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418
YLPTIT+HLR+AIAPRR KPSLEALACVGNIA+AM MEP+VR LLD+M SAGLS TLV
Sbjct: 361 YLPTITAHLRDAIAPRRAKPSLEALACVGNIAKAMKTAMEPYVRSLLDVMLSAGLSPTLV 420
Query: 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNG 478
+ALEQI+ SIPSLLPTIQ+RLLDCIS LSKSH+SQ+R A +RG++ N PQQVSDL+G
Sbjct: 421 EALEQISDSIPSLLPTIQERLLDCISLALSKSHFSQSRAAIHTVRGSMTNAPQQVSDLSG 480
Query: 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538
SA VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCCKLVANSFS +
Sbjct: 481 SALVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCKLVANSFSAMV 540
Query: 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA 598
TQ G+ RSNRTGGKR RL+EELVEKLLIAAVADADVTVR SIFSSL+GNRGFDDFLAQA
Sbjct: 541 STQVGSGRSNRTGGKRWRLVEELVEKLLIAAVADADVTVRQSIFSSLHGNRGFDDFLAQA 600
Query: 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKC 658
D LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL+Q SADNKC
Sbjct: 601 DILSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLKQ-SADNKC 659
Query: 659 REESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718
REESAKLLGCLIRNCE+L+ PYIAP+HKALVARLLEGTG+NANNGIISGVLVTVGDLARV
Sbjct: 660 REESAKLLGCLIRNCEQLVLPYIAPVHKALVARLLEGTGVNANNGIISGVLVTVGDLARV 719
Query: 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778
GGF MRQYISELMPLIVEALLDGAA TKREVAV+TLGQVVQSTGYVITPY EYPQLLGLL
Sbjct: 720 GGFAMRQYISELMPLIVEALLDGAAATKREVAVATLGQVVQSTGYVITPYTEYPQLLGLL 779
Query: 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMD 837
LK+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L GSHGEV RAASDSGQHI MD
Sbjct: 780 LKLLNGELGWTTRREVLKVLGIMGALDPHVHKRNQQNLPGSHGEVARAASDSGQHIPSMD 839
Query: 838 EFPMDLWPSFATSEDYYST-VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
E PMDLWPSFATSEDYYST VAINSLMRILRDPSLASYHQ+VVGSLMFIFKSMGLGCVPY
Sbjct: 840 ELPMDLWPSFATSEDYYSTVVAINSLMRILRDPSLASYHQRVVGSLMFIFKSMGLGCVPY 899
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
LPKVLPDLFHTVRTCDD LKD+ITWKLGTLVSIVRQHIRKYL EL SLISELWSSFSLPA
Sbjct: 900 LPKVLPDLFHTVRTCDDCLKDFITWKLGTLVSIVRQHIRKYLPELLSLISELWSSFSLPA 959
Query: 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016
R RG PVLHLV+QLCLALNDEFR HLPVILPCC+QVLSDAERCNDY+YVLDILHTLE
Sbjct: 960 PIRPPRGFPVLHLVEQLCLALNDEFRKHLPVILPCCLQVLSDAERCNDYSYVLDILHTLE 1019
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLV 1076
VFGGTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLTRLIP VQVTGHIS+LVHHLKLV
Sbjct: 1020 VFGGTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTRLIPCVQVTGHISALVHHLKLV 1079
Query: 1077 LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREP 1136
LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR RRREP
Sbjct: 1080 LDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRFRRREP 1139
Query: 1137 LILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQ 1185
+ILGSTAAQ+LSRR+PVEVISDPLND+++DPYEDG D Q+ LRGHQ ASQ
Sbjct: 1140 IILGSTAAQRLSRRLPVEVISDPLNDMENDPYEDGIDMQRHLRGHQVNDGRLRTAGEASQ 1199
Query: 1186 RSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATS 1245
RST+EDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN S
Sbjct: 1200 RSTREDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNEAS 1259
Query: 1246 QKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKAL 1305
QKHLV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA+KCRAFAKAL
Sbjct: 1260 QKHLVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALADKCRAFAKAL 1319
Query: 1306 HYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYE 1365
HYKEMEFEG+RS +MDANPVAVVE LIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYE
Sbjct: 1320 HYKEMEFEGSRSKKMDANPVAVVETLIHINNQLHQHEAAVGILTYAQQLLDVQLKESWYE 1379
Query: 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAA 1425
KLQRWDDALKAYT KASQ S+PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEP+A
Sbjct: 1380 KLQRWDDALKAYTVKASQVSSPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPSA 1439
Query: 1426 RLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL 1485
RLEMAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+K+RGLGNTAA+GDGSSNGTFFRAVLL
Sbjct: 1440 RLEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKIRGLGNTAASGDGSSNGTFFRAVLL 1499
Query: 1486 VRRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523
VR+ K VLESYERAY NMVRVQQLSELEEVIDYCTLP G
Sbjct: 1500 VRKEKYDEAREYVERARKCLATELAALVLESYERAYVNMVRVQQLSELEEVIDYCTLPAG 1559
Query: 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG 1583
NPVAEGRRA+IRNMWTERI+G KRNVEVWQ LLAVRALVLPPTED++ WLKFASLCRKS
Sbjct: 1560 NPVAEGRRALIRNMWTERIRGAKRNVEVWQLLLAVRALVLPPTEDIDNWLKFASLCRKSN 1619
Query: 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643
RISQARSTLVKLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGED KRKEAFARLQ LA
Sbjct: 1620 RISQARSTLVKLLQYDPETSPENVRYHGPPQVMLAYLKYQWSLGEDHKRKEAFARLQDLA 1679
Query: 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRN 1703
+ELSS P +QS SL +T NV L+ARVY LG+W+ L PGLDD+SI EI+ ++RN
Sbjct: 1680 IELSSAPNMQSITPISLMGSTGQNVHLLARVYRTLGAWQWTLSPGLDDDSIQEILLSFRN 1739
Query: 1704 ATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763
ATQ AT+WGKAWHSWALFNTAVMS YTL+GLP+VA QFVV AVTGYFHSIACAA+AKGVD
Sbjct: 1740 ATQYATEWGKAWHSWALFNTAVMSQYTLQGLPNVASQFVVSAVTGYFHSIACAANAKGVD 1799
Query: 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELI 1823
DSLQDILRLLTLWFNHGA+ EVQ+ALQKGF+HVNINTWLVVLPQIIARIHSN AVRELI
Sbjct: 1800 DSLQDILRLLTLWFNHGASAEVQMALQKGFSHVNINTWLVVLPQIIARIHSNTHAVRELI 1859
Query: 1824 QSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
QSLLVRIGQSHPQALMYPLLVACKSISNLR+AAA+EVV+KVR+HSG
Sbjct: 1860 QSLLVRIGQSHPQALMYPLLVACKSISNLRKAAAEEVVNKVRKHSGV 1906
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105777|ref|XP_002313929.1| predicted protein [Populus trichocarpa] gi|222850337|gb|EEE87884.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3309 bits (8580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1632/1906 (85%), Positives = 1733/1906 (90%), Gaps = 37/1906 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGG-SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLG 59
MASTSQSLR++ PA GG S DALNRILADLC GNPKEGA+LALRKH+EE+ARDL
Sbjct: 1 MASTSQSLRFLAGPATTGPGGGSFDALNRILADLCIRGNPKEGATLALRKHLEEEARDLS 60
Query: 60 GEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVF 119
GE+F RFMD LY+RIS LLE+N+ AENLGALRAIDELID+ LGENASKVSKF+ YMR+VF
Sbjct: 61 GESFPRFMDHLYERISSLLETNEVAENLGALRAIDELIDIELGENASKVSKFAVYMRSVF 120
Query: 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179
EVKRD ++L LAS+VLGHLARAGGAMTADEV+FQVKMAL WLR D+ E+R FAAVLILKE
Sbjct: 121 EVKRDLDVLTLASRVLGHLARAGGAMTADEVKFQVKMALGWLRKDKAEFRLFAAVLILKE 180
Query: 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYR 239
+AENASTVFNVHV EFV+AIWVALR PTLA+RE+AVEALRACLRVIEKRETRWRVQWYYR
Sbjct: 181 IAENASTVFNVHVTEFVEAIWVALRHPTLAIREKAVEALRACLRVIEKRETRWRVQWYYR 240
Query: 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299
MFEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL
Sbjct: 241 MFEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 300
Query: 300 SITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHY 359
SITSLLPRIAHFLRDRFVTNYL+ICMNHIL VLRIPAER SGFIALGEMAGALDGEL HY
Sbjct: 301 SITSLLPRIAHFLRDRFVTNYLEICMNHILAVLRIPAERGSGFIALGEMAGALDGELVHY 360
Query: 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVD 419
LPTIT+HLR+AIAPRR KPSLEAL CVGNIA+AMGP MEP VR LLD+MFSAGLS+TLVD
Sbjct: 361 LPTITAHLRDAIAPRRAKPSLEALVCVGNIAKAMGPAMEPFVRSLLDVMFSAGLSSTLVD 420
Query: 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479
ALEQI+VSIPSLLPTIQ+RLLDCIS VLSKSHYSQ R A P+RG PQQVSDL+GS
Sbjct: 421 ALEQISVSIPSLLPTIQERLLDCISLVLSKSHYSQPRTAVPPVRGGAGIAPQQVSDLSGS 480
Query: 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF 539
A VQL LQTLARFNFKGH+LLEFAR+SV++YLDDED ATRKDAALCCCKLVA+SFSG++
Sbjct: 481 ALVQLTLQTLARFNFKGHELLEFARESVLVYLDDEDGATRKDAALCCCKLVADSFSGMTS 540
Query: 540 TQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQAD 599
TQFG+ RSNR GGKR RL+EELVEKLLIAAVADAD+TVR SIFSSL+GNRGFD+FLAQAD
Sbjct: 541 TQFGSIRSNRNGGKRWRLVEELVEKLLIAAVADADITVRQSIFSSLHGNRGFDNFLAQAD 600
Query: 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCR 659
L+A+FAALNDEDFDVREYAIS+AGRLSEKNPAYVLPALRRHLIQLLTYL+Q SADNKCR
Sbjct: 601 SLTAVFAALNDEDFDVREYAISLAGRLSEKNPAYVLPALRRHLIQLLTYLKQ-SADNKCR 659
Query: 660 EESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG 719
EESAKLLGCLIRNCERL+ PYIAPIHKALVARL EGTG+NANNGIISGVLVTVGDLARVG
Sbjct: 660 EESAKLLGCLIRNCERLVLPYIAPIHKALVARLNEGTGVNANNGIISGVLVTVGDLARVG 719
Query: 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779
GF MRQYISELMPLIVEALLDGAA TKREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLL
Sbjct: 720 GFAMRQYISELMPLIVEALLDGAAATKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLL 779
Query: 780 KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDE 838
K LNGELVWSTRREVLKVLGIMGALDP HKRNQQ L GSHGEV RAASDSGQHI MDE
Sbjct: 780 KFLNGELVWSTRREVLKVLGIMGALDPLVHKRNQQSLPGSHGEVARAASDSGQHIPSMDE 839
Query: 839 FPMDLWPSFATSEDYYST-VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL 897
PMD WPSFATSEDYY T VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY+
Sbjct: 840 LPMDFWPSFATSEDYYPTVVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYI 899
Query: 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPAT 957
PKVLPDLFHTVRTCDDYLKD+I WKLGTLVSIVRQHIRKYL EL SLISELWSSFSLPAT
Sbjct: 900 PKVLPDLFHTVRTCDDYLKDFIMWKLGTLVSIVRQHIRKYLPELLSLISELWSSFSLPAT 959
Query: 958 NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV 1017
R RG PVLHLV+QLCLALNDEFR HLPVILP CIQVLSDAERCNDYTY LDILHTLEV
Sbjct: 960 IRPSRGFPVLHLVEQLCLALNDEFRRHLPVILPSCIQVLSDAERCNDYTYALDILHTLEV 1019
Query: 1018 FGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVL 1077
FGGTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLTRLIP VQV GHIS+LVHHLKLVL
Sbjct: 1020 FGGTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTRLIPCVQVIGHISALVHHLKLVL 1079
Query: 1078 DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPL 1137
DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRL+HKEFEEIEGRLRRREPL
Sbjct: 1080 DGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLQHKEFEEIEGRLRRREPL 1139
Query: 1138 ILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQR 1186
ILGSTAAQ+LSRR+PVEVISDPLND+++DPY+DG D Q+ L GHQ ASQR
Sbjct: 1140 ILGSTAAQRLSRRLPVEVISDPLNDMENDPYDDGVDMQRHLSGHQVNDSQLRTAGEASQR 1199
Query: 1187 STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQ 1246
STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPF+GRELFAAGFVSCW+QLN SQ
Sbjct: 1200 STKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFIGRELFAAGFVSCWAQLNEASQ 1259
Query: 1247 KHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALH 1306
KHLV+SLEMAFSS NIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALA+KC AFAKALH
Sbjct: 1260 KHLVRSLEMAFSSQNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALADKCHAFAKALH 1319
Query: 1307 YKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEK 1366
YKEMEFEG+ S +MDANPVAVVE LIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEK
Sbjct: 1320 YKEMEFEGSLSKKMDANPVAVVETLIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEK 1379
Query: 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR 1426
LQRWDDALKAYT KASQ S+PH+VLEATLGRMRCLA LARWEELNNLCKEYWTPAEP+AR
Sbjct: 1380 LQRWDDALKAYTVKASQVSSPHLVLEATLGRMRCLAQLARWEELNNLCKEYWTPAEPSAR 1439
Query: 1427 LEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLV 1486
LEMAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+GDGSSNGTFFRAVLLV
Sbjct: 1440 LEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASGDGSSNGTFFRAVLLV 1499
Query: 1487 RRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524
RRGK VLESYERAY NM+RVQQLSELEEVIDY TLPVGN
Sbjct: 1500 RRGKYDEAGEYVERARKCLATELAALVLESYERAYDNMIRVQQLSELEEVIDYYTLPVGN 1559
Query: 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGR 1584
PVAEGRRA+IRNMWTERIQG KRNVEVWQALLAVRALVLPP ED++ WLKFASLCRKS R
Sbjct: 1560 PVAEGRRALIRNMWTERIQGAKRNVEVWQALLAVRALVLPPIEDIDNWLKFASLCRKSNR 1619
Query: 1585 ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644
IS ARSTLVKLLQYDPETS EN+RYHGPPQVM AYLKYQWSLGED KRKEAF+RLQ LA+
Sbjct: 1620 ISHARSTLVKLLQYDPETSPENMRYHGPPQVMLAYLKYQWSLGEDHKRKEAFSRLQDLAI 1679
Query: 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNA 1704
ELSS P +QS T L +T NV L+ARVY LG W+ AL PGLDD+SI EI++++ NA
Sbjct: 1680 ELSSTPNMQSIIPTGLMGSTGQNVHLLARVYRILGIWQWALSPGLDDDSIQEILSSFSNA 1739
Query: 1705 TQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD 1764
TQ TKWGKAWHSWALFNT VMSHYTLRG P+VA QFVV AVTGYFHSIA AA+AKGVD
Sbjct: 1740 TQYETKWGKAWHSWALFNTGVMSHYTLRGFPNVASQFVVAAVTGYFHSIAYAANAKGVDG 1799
Query: 1765 SLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQ 1824
SLQDILRLLTLWFNHG T EVQ+ALQKGFAHVNINTWL VLPQIIARIH NN A+RELIQ
Sbjct: 1800 SLQDILRLLTLWFNHGDTAEVQMALQKGFAHVNINTWLAVLPQIIARIHLNNHALRELIQ 1859
Query: 1825 SLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
SLLVRIGQSHPQALMYPLLVACKSISNLR+AAA+EVV+KVRQHSG
Sbjct: 1860 SLLVRIGQSHPQALMYPLLVACKSISNLRKAAAEEVVNKVRQHSGV 1905
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475536|ref|XP_002275591.2| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3283 bits (8512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1612/1904 (84%), Positives = 1731/1904 (90%), Gaps = 40/1904 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAST+QS+R+ P A G SLDALNRILADLC G PK+GA+LAL+ H+EE+ARDL G
Sbjct: 1 MASTAQSIRFGAP----AAGSSLDALNRILADLCARGPPKDGAALALKIHLEEEARDLSG 56
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LL+SND AEN+GALRAIDELIDVALGE+ASKVSKFS Y+RTVFE
Sbjct: 57 EAFSRFMDQLYDRISNLLDSNDVAENMGALRAIDELIDVALGESASKVSKFSGYVRTVFE 116
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRDR++L+LAS VLGHLARAGGAMTADEVE QV+ AL+WLRG+R+EYRRFAAVLILKEM
Sbjct: 117 AKRDRDVLILASTVLGHLARAGGAMTADEVECQVQNALEWLRGERIEYRRFAAVLILKEM 176
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDPTL +RERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 177 AENASTVFNVHVPEFVDAIWVALRDPTLPIRERAVEALRACLRVIEKRETRWRVQWYYRM 236
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IV+ YLEH+DRLVRLS
Sbjct: 237 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVITYLEHKDRLVRLS 296
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHIL VLR PAERDSGFIALGEMAGALDGEL HY+
Sbjct: 297 ITSLLPRIAHFLRDRFVTNYLNICMNHILAVLRQPAERDSGFIALGEMAGALDGELVHYM 356
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPRRG+PSL+AL CVG+IA+AMG VMEP+VR LLD+MF GLS L++A
Sbjct: 357 PTIISHLRDAIAPRRGRPSLDALTCVGSIAKAMGSVMEPYVRSLLDVMFFPGLSHALIEA 416
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIPSLLPTIQDRLLDCIS LS+SHY ARPA RG+ +N QQV D + A
Sbjct: 417 LEQITASIPSLLPTIQDRLLDCISIALSRSHYPLARPAVAMARGSTVNTAQQVLDFSSPA 476
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQL+LQTLA FNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC L+ANSFSG +
Sbjct: 477 LVQLSLQTLAHFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCSLIANSFSGTTCP 536
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QF +SRSNRTGGKRRRL+EE+VEKLLIAA+ADADVTVR SIF SL+ N GFD+FLAQAD
Sbjct: 537 QFSSSRSNRTGGKRRRLVEEIVEKLLIAAIADADVTVRRSIFLSLHENGGFDEFLAQADS 596
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISV+GRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KCRE
Sbjct: 597 LSAVFAALNDEDFDVREYAISVSGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCRE 655
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAPIHKALVA+L EG+G+NANNGIISGVLVTVGDLARVGG
Sbjct: 656 ESAKLLGCLIRNCERLILPYIAPIHKALVAKLAEGSGVNANNGIISGVLVTVGDLARVGG 715
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MR +++LMPLIVEAL+DGAAVTKREVAV+TLGQVVQSTGYVI PYN YPQLLGLLLK
Sbjct: 716 SAMRDNVTDLMPLIVEALMDGAAVTKREVAVATLGQVVQSTGYVIAPYNAYPQLLGLLLK 775
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L G HGEV R ASD+GQHI+ MDE
Sbjct: 776 LLNGELAWTTRREVLKVLGIMGALDPHVHKRNQQCLPGLHGEVARPASDTGQHIRSMDEL 835
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFATSEDYYSTVAINSLMRILRD SL+SYHQKVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 836 PMDLWPSFATSEDYYSTVAINSLMRILRDASLSSYHQKVVGSLMFIFKSMGLGCVPYLPK 895
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLF TVRTC+D LK++ITWKLGTLVSIVRQHIRKYL EL LISELW SFSLP++NR
Sbjct: 896 VLPDLFLTVRTCEDGLKEFITWKLGTLVSIVRQHIRKYLPELLLLISELWPSFSLPSSNR 955
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
GLP+LHLV+QLCLALNDEFRT+LP+ILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 956 PVHGLPILHLVEQLCLALNDEFRTYLPLILPSCIQVLSDAERCNDYTYVLDILHTLEVFG 1015
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA V IRRAA +TLTRLIPRVQVTGHIS+LVHHLKLVLDG
Sbjct: 1016 GTLDEHMHLLLPALIRLFKVDASVAIRRAAFKTLTRLIPRVQVTGHISALVHHLKLVLDG 1075
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALG DFTIFIPSIHKLL+KHRLRHKEFEEIEGRL+RREPLIL
Sbjct: 1076 KNDELRKDAVDALCCLAHALGGDFTIFIPSIHKLLMKHRLRHKEFEEIEGRLQRREPLIL 1135
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GSTAAQ+L R PVEV SDPLNDV++DPYEDG+DAQ+Q+RGHQ ASQRST
Sbjct: 1136 GSTAAQRLISRFPVEVTSDPLNDVENDPYEDGSDAQRQIRGHQVNDGRLRTAGEASQRST 1195
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1196 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNDTSQKQ 1255
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1256 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1315
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQ
Sbjct: 1316 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEKLQ 1375
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQAS PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1376 RWDDALKAYTAKASQASTPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1435
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMA+YVSRLDDGDE+KLR LGNT A+GDGSSNGTFFRAVLLVRR
Sbjct: 1436 MAPMAANAAWNMGEWDQMADYVSRLDDGDETKLRVLGNTTASGDGSSNGTFFRAVLLVRR 1495
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESY+RAYSNMVRVQQLSELEEVIDYCTLPVGNPV
Sbjct: 1496 GKYDEAREFVERARKCLATELAALVLESYDRAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1555
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AEGRRA+IRNMWTERIQG KRNVEVWQ LLAVRALVLPP ED+E WLKF+ LCRK+GRIS
Sbjct: 1556 AEGRRALIRNMWTERIQGAKRNVEVWQVLLAVRALVLPPIEDIENWLKFSYLCRKNGRIS 1615
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTL+KLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGEDLKRKEAF RLQ LA+EL
Sbjct: 1616 QARSTLIKLLQYDPETSPENVRYHGPPQVMVAYLKYQWSLGEDLKRKEAFGRLQNLAIEL 1675
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS IQSA ST L + +S +VPL+ARVY +LG+W+ AL P LD++SI EI++A+RNATQ
Sbjct: 1676 SSAN-IQSATSTGLMSTSSVSVPLLARVYRRLGTWQWALSPALDEDSIQEILSAFRNATQ 1734
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CATKW KAWHSWALFNTAVMSHYTLRG P++A QFVV AVTGYFHSIA AA+AKGVDDSL
Sbjct: 1735 CATKWAKAWHSWALFNTAVMSHYTLRGFPNIAAQFVVAAVTGYFHSIAFAANAKGVDDSL 1794
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL KGF++VNI+TWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1795 QDILRLLTLWFNHGATAEVQMALHKGFSYVNIDTWLVVLPQIIARIHSNNHAVRELIQSL 1854
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIG+SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT
Sbjct: 1855 LVRIGESHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1898
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479024|ref|XP_004155484.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase TOR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3258 bits (8446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1639/1904 (86%), Positives = 1738/1904 (91%), Gaps = 39/1904 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA++ QSLR + GG+ D+LNRIL+DLCT G+PKEGA AL+KHIEE ARDL G
Sbjct: 1 MATSGQSLR---SSSAATSGGNFDSLNRILSDLCTRGHPKEGAPSALKKHIEEAARDLNG 57
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LLESND AENLGALRAIDELIDVALGENASKVSKFSNY+R+VFE
Sbjct: 58 EAFSRFMDQLYDRISTLLESNDVAENLGALRAIDELIDVALGENASKVSKFSNYIRSVFE 117
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+R+EYRRFAAVLILKEM
Sbjct: 118 LKRDPEILVLASRVLGHLARAGGAMTADEVEHQVKIALDWLRGERIEYRRFAAVLILKEM 177
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP LAVRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 178 AENASTVFNVHVPEFVDAIWVALRDPQLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 237
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IVLRYLEHRDRLVRLS
Sbjct: 238 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVLRYLEHRDRLVRLS 297
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLR PAER SGFIALGEMAGALDGEL +YL
Sbjct: 298 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRTPAERASGFIALGEMAGALDGELKYYL 357
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLR+AIAPRRG+PSLEALACVG+IA+AMGP ME HVRGLLD+MFSAGLS TLV++
Sbjct: 358 PTITNHLRDAIAPRRGRPSLEALACVGSIAKAMGPAMESHVRGLLDVMFSAGLSHTLVES 417
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIP LL +IQ+RLLD IS VLSKSH Q R AA R NVM +PQ VSDL GS+
Sbjct: 418 LEQITTSIPILLSSIQERLLDSISMVLSKSHSPQGRAAAVVGRANVMTVPQPVSDLCGSS 477
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+LV+NSFS ++ T
Sbjct: 478 LVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDGATRKDAALCCCRLVSNSFSVMACT 537
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG SRS+R GG+RRRL+EELVEKLLIAAVADADV VR+SIF SL+GNRGFDDF+AQAD
Sbjct: 538 QFGTSRSSRAGGRRRRLVEELVEKLLIAAVADADVAVRNSIFVSLHGNRGFDDFIAQADS 597
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL+Q SADNKCRE
Sbjct: 598 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLDQ-SADNKCRE 656
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAP+HKALVARL EGTG+NANNGII+GVLVTVGDLARVGG
Sbjct: 657 ESAKLLGCLIRNCERLILPYIAPVHKALVARLSEGTGVNANNGIITGVLVTVGDLARVGG 716
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQY+ ELMPLIVEALLDGAAV KREVAVSTLGQVVQSTGYVITPYNEYP LLGLLLK
Sbjct: 717 FAMRQYLPELMPLIVEALLDGAAVAKREVAVSTLGQVVQSTGYVITPYNEYPLLLGLLLK 776
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ-QLSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL WSTRREVLKVLGIMGALDPH HKRNQ L GSHGEVTRAASDSGQHIQ +DE
Sbjct: 777 LLNGELAWSTRREVLKVLGIMGALDPHVHKRNQLSLPGSHGEVTRAASDSGQHIQSVDEL 836
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PM+LWPSFATSEDYYSTVAI+SL+RILRDPSLASYH KVVGSLMFIFKSMGLG VPYLPK
Sbjct: 837 PMELWPSFATSEDYYSTVAISSLLRILRDPSLASYHLKVVGSLMFIFKSMGLGSVPYLPK 896
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTV TCDD LKD+ITWKLGTLVSIVRQHIRKYL EL SLISELWSSF+ P+T+R
Sbjct: 897 VLPDLFHTVSTCDDTLKDFITWKLGTLVSIVRQHIRKYLPELLSLISELWSSFNFPSTSR 956
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFR L +ILPCCIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 957 PPLGYPVLHLVEQLCLALNDEFRMILHIILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1016
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAP DIRRAAI TLTRLIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1017 GTLDEHMHLLLPALIRLFKVDAPADIRRAAIRTLTRLIPRVQVTGHISSLVHHLKLVLDG 1076
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
+NDEL+KDAVDALCCLA ALGEDFT+FIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL
Sbjct: 1077 RNDELQKDAVDALCCLAQALGEDFTVFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1136
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GST AQ+LSRRVPVEVISDPLNDVD DPYED +D KQ RGHQ ASQRST
Sbjct: 1137 GSTTAQRLSRRVPVEVISDPLNDVDIDPYEDKSDVHKQFRGHQVNDGRLRTAGEASQRST 1196
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1197 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1256
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1257 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1316
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPV+VVEALIHINNQLHQHEAAVGILTYAQ L VQLKESWYEKLQ
Sbjct: 1317 EMEFEGARSKKMDANPVSVVEALIHINNQLHQHEAAVGILTYAQLHLGVQLKESWYEKLQ 1376
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RW+DALKAYT KASQASNPH+VL+A LGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1377 RWEDALKAYTAKASQASNPHLVLDAMLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1436
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLR LGNTAA+GDGSS+GTF+RAVLLVR+
Sbjct: 1437 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRSLGNTAASGDGSSSGTFYRAVLLVRK 1496
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV
Sbjct: 1497 GKYDEAREFVDRARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1556
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AEGRRA+IRNMWTERIQG KRNVEVWQA+LAVRALVLPPTED+ETWLKFASLCRKSGR+S
Sbjct: 1557 AEGRRALIRNMWTERIQGAKRNVEVWQAVLAVRALVLPPTEDIETWLKFASLCRKSGRVS 1616
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTLVKLLQYDPETS EN Y GPPQVM AYLKYQWSLGED+KRKEAFARLQ L+ EL
Sbjct: 1617 QARSTLVKLLQYDPETS-ENGWYSGPPQVMLAYLKYQWSLGEDIKRKEAFARLQVLSREL 1675
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P+IQ A SL++ S+ VPL+ARV L+LG+W+ AL PGLDD+SI EI+ A+RNATQ
Sbjct: 1676 SSSPIIQPAKHISLSSGRSSTVPLLARVCLELGTWQWALSPGLDDDSIQEILTAFRNATQ 1735
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CA W KAWH WALFNTAVMSHYT+RG P VA QFVV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1736 CANTWAKAWHMWALFNTAVMSHYTMRGFPDVAAQFVVAAVTGYFHSIACAANSKGVDDSL 1795
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT +VQ+ALQKGFAHVNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1796 QDILRLLTLWFNHGATADVQMALQKGFAHVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1855
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG
Sbjct: 1856 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGV 1899
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539702|ref|XP_003538334.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3237 bits (8394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1614/1904 (84%), Positives = 1738/1904 (91%), Gaps = 41/1904 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIGPP+ G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIGPPSVAPGPG--DALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPVLPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL++P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKVPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQDRLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQDRLLDSISMVLSKSHYHLGRPAQSVGRGTIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+QLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LIQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRRRL+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRRLVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PYIAPIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLIIPYIAPIHKALVARLID---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRPASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P+DLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PLDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGPGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LR HQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRDHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LVQ+LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVQNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVE LIHIN+QLHQHEAA+GILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEVLIHINSQLHQHEAALGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDY TLP+GN V
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYRTLPIGNRV 1553
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
A+ RRA+IRNMWT+RI+G K NVEVWQALLAVRALVLPP EDVE+WLKFASLCRKSGRIS
Sbjct: 1554 ADERRALIRNMWTQRIEGAKSNVEVWQALLAVRALVLPPVEDVESWLKFASLCRKSGRIS 1613
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1614 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1673
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1674 SSAPNIQPVTPSSFTNGLNLSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1733
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1734 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1793
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1794 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1853
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSG
Sbjct: 1854 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGV 1897
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497486|ref|XP_003517591.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3219 bits (8345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1615/1904 (84%), Positives = 1732/1904 (90%), Gaps = 41/1904 (2%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIG P G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIG--PPSVGPGPGDALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPALPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL+ P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKAPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQ RLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQGRLLDSISMVLSKSHYHLGRPAQSVGRGIIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRR L+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRILVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PY APIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLILPYTAPIHKALVARLVD---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR+ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRSASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PMDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGLGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIR FKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRFFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LRGHQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRGHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV++LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVRNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAANAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELEEVIDY TLP G+ V
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYRTLPTGDQV 1553
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
AE RRA+IRNMWT+RI+G K NVEVWQALL VRALVLPP EDVETWLKFASLCRKSGRIS
Sbjct: 1554 AEERRALIRNMWTQRIEGAKSNVEVWQALLVVRALVLPPVEDVETWLKFASLCRKSGRIS 1613
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1614 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1673
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1674 SSAPSIQPVTPSSFTNGLNPSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1733
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1734 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1793
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1794 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1853
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSG
Sbjct: 1854 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGV 1897
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475538|ref|XP_002275614.2| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3209 bits (8320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1586/1904 (83%), Positives = 1704/1904 (89%), Gaps = 67/1904 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAST+QS+R+ P A G SLDALNRILADLC G PK+GA+LAL+ H+EE+ARDL G
Sbjct: 1 MASTAQSIRFGAP----AAGSSLDALNRILADLCARGPPKDGAALALKIHLEEEARDLSG 56
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRIS LL+SND AEN+GALRAIDELIDVALGE+ASKVSKFS Y+RTVFE
Sbjct: 57 EAFSRFMDQLYDRISNLLDSNDVAENMGALRAIDELIDVALGESASKVSKFSGYVRTVFE 116
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRDR++L+LAS VLGHLARAGGAMTADEVE QV+ AL+WLRG+R+EYRRFAAVLILKEM
Sbjct: 117 AKRDRDVLILASTVLGHLARAGGAMTADEVECQVQNALEWLRGERIEYRRFAAVLILKEM 176
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDPTL +RERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 177 AENASTVFNVHVPEFVDAIWVALRDPTLPIRERAVEALRACLRVIEKRETRWRVQWYYRM 236
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA+IV+ YLEH+DRLVRLS
Sbjct: 237 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVADIVITYLEHKDRLVRLS 296
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHIL VLR PAERDSGFIALGEMAGALDGEL HY+
Sbjct: 297 ITSLLPRIAHFLRDRFVTNYLNICMNHILAVLRQPAERDSGFIALGEMAGALDGELVHYM 356
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPRRG+PSL+AL CVG+IA+AMG VMEP+VR LLD+MF GLS L++A
Sbjct: 357 PTIISHLRDAIAPRRGRPSLDALTCVGSIAKAMGSVMEPYVRSLLDVMFFPGLSHALIEA 416
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQIT SIPSLLPTIQDRLLDCIS LS+SHY ARPA RG+ +N QQV D + A
Sbjct: 417 LEQITASIPSLLPTIQDRLLDCISIALSRSHYPLARPAVAMARGSTVNTAQQVLDFSSPA 476
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQL+LQTLA FNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC L+ANSFSG +
Sbjct: 477 LVQLSLQTLAHFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCSLIANSFSGTTCP 536
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QF +SRSNRTGGKRRRL+EE+VEKLLIAA+ADADVTVR SIF SL+ N GFD+FLAQAD
Sbjct: 537 QFSSSRSNRTGGKRRRLVEEIVEKLLIAAIADADVTVRRSIFLSLHENGGFDEFLAQADS 596
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISV+GRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KCRE
Sbjct: 597 LSAVFAALNDEDFDVREYAISVSGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCRE 655
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCLIRNCERLI PYIAPIHKALVA+L EG+G+NANNGIISGVLVTVGDLARVGG
Sbjct: 656 ESAKLLGCLIRNCERLILPYIAPIHKALVAKLAEGSGVNANNGIISGVLVTVGDLARVGG 715
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MR +++LMPLIVEAL+DGAAVTKREVAV+TLGQVVQSTGYVI PYN YPQLLGLLLK
Sbjct: 716 SAMRDNVTDLMPLIVEALMDGAAVTKREVAVATLGQVVQSTGYVIAPYNAYPQLLGLLLK 775
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGEL W+TRREVLKVLGIMGALDPH HKRNQQ L G HGEV R ASD+GQHI+ MDE
Sbjct: 776 LLNGELAWTTRREVLKVLGIMGALDPHVHKRNQQCLPGLHGEVARPASDTGQHIRSMDEL 835
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFATSEDYYSTVAINSLMRILRD SL+SYHQKVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 836 PMDLWPSFATSEDYYSTVAINSLMRILRDASLSSYHQKVVGSLMFIFKSMGLGCVPYLPK 895
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLF TVRTC+D LK++ITWKLGTLVSIVRQHIRKYL EL LISELW SFSLP++NR
Sbjct: 896 VLPDLFLTVRTCEDGLKEFITWKLGTLVSIVRQHIRKYLPELLLLISELWPSFSLPSSNR 955
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
GLP+LHLV+QLCLALNDEFRT+LP+ILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 956 PVHGLPILHLVEQLCLALNDEFRTYLPLILPSCIQVLSDAERCNDYTYVLDILHTLEVFG 1015
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA V IRRAA +TLTRLIPRVQVTGHIS+LVHHLKLVLDG
Sbjct: 1016 GTLDEHMHLLLPALIRLFKVDASVAIRRAAFKTLTRLIPRVQVTGHISALVHHLKLVLDG 1075
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALG DFTIFIPSIHKLL+KHRLRHKEFEEIEGRL+RREPLIL
Sbjct: 1076 KNDELRKDAVDALCCLAHALGGDFTIFIPSIHKLLMKHRLRHKEFEEIEGRLQRREPLIL 1135
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
GSTAAQ+L R PVEV SDPLNDV++DPYEDG+DAQ+Q+RGHQ ASQRST
Sbjct: 1136 GSTAAQRLISRFPVEVTSDPLNDVENDPYEDGSDAQRQIRGHQVNDGRLRTAGEASQRST 1195
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1196 KEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNDTSQKQ 1255
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV+SLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1256 LVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1315
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQ
Sbjct: 1316 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEKLQ 1375
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQAS PH+VLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE
Sbjct: 1376 RWDDALKAYTAKASQASTPHLVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1435
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMA+YVSRLDDGDE+KLR LGNT A+GDGSSNGTFFRAVLLVRR
Sbjct: 1436 MAPMAANAAWNMGEWDQMADYVSRLDDGDETKLRVLGNTTASGDGSSNGTFFRAVLLVRR 1495
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESY+RAYSNMVRVQQLSELE
Sbjct: 1496 GKYDEAREFVERARKCLATELAALVLESYDRAYSNMVRVQQLSELE-------------- 1541
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERIQG KRNVEVWQ LLAVRALVLPP ED+E WLKF+ LCRK+GRIS
Sbjct: 1542 -------------ERIQGAKRNVEVWQVLLAVRALVLPPIEDIENWLKFSYLCRKNGRIS 1588
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QARSTL+KLLQYDPETS ENVRYHGPPQVM AYLKYQWSLGEDLKRKEAF RLQ LA+EL
Sbjct: 1589 QARSTLIKLLQYDPETSPENVRYHGPPQVMVAYLKYQWSLGEDLKRKEAFGRLQNLAIEL 1648
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS IQSA ST L + +S +VPL+ARVY +LG+W+ AL P LD++SI EI++A+RNATQ
Sbjct: 1649 SSAN-IQSATSTGLMSTSSVSVPLLARVYRRLGTWQWALSPALDEDSIQEILSAFRNATQ 1707
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
CATKW KAWHSWALFNTAVMSHYTLRG P++A QFVV AVTGYFHSIA AA+AKGVDDSL
Sbjct: 1708 CATKWAKAWHSWALFNTAVMSHYTLRGFPNIAAQFVVAAVTGYFHSIAFAANAKGVDDSL 1767
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL KGF++VNI+TWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1768 QDILRLLTLWFNHGATAEVQMALHKGFSYVNIDTWLVVLPQIIARIHSNNHAVRELIQSL 1827
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIG+SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT
Sbjct: 1828 LVRIGESHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539704|ref|XP_003538335.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3179 bits (8243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1594/1904 (83%), Positives = 1714/1904 (90%), Gaps = 68/1904 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIGPP+ G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIGPPSVAPGPG--DALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPVLPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL++P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKVPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQDRLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQDRLLDSISMVLSKSHYHLGRPAQSVGRGTIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+QLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LIQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRRRL+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRRLVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PYIAPIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLIIPYIAPIHKALVARLID---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRPASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P+DLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PLDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGPGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LR HQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRDHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LVQ+LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVQNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVE LIHIN+QLHQHEAA+GILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEVLIHINSQLHQHEAALGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAA+AAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELE
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELE-------------- 1539
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERI+G K NVEVWQALLAVRALVLPP EDVE+WLKFASLCRKSGRIS
Sbjct: 1540 -------------ERIEGAKSNVEVWQALLAVRALVLPPVEDVESWLKFASLCRKSGRIS 1586
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1587 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1646
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1647 SSAPNIQPVTPSSFTNGLNLSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1706
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1707 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1766
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1767 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1826
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSG
Sbjct: 1827 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGV 1870
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497488|ref|XP_003517592.1| PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3162 bits (8198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1595/1904 (83%), Positives = 1709/1904 (89%), Gaps = 68/1904 (3%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MA+ SQS RYIG P G G DALNRILADLCT GNPKEGASLAL+KH+EE+ARD+ G
Sbjct: 1 MATASQSHRYIG--PPSVGPGPGDALNRILADLCTRGNPKEGASLALKKHLEEEARDISG 58
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EAFSRFMDQLYDRISGLL+S+D AENLGALRAIDELIDVALGENASKVS+FS+YMR VF+
Sbjct: 59 EAFSRFMDQLYDRISGLLDSSDVAENLGALRAIDELIDVALGENASKVSRFSSYMRIVFD 118
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
KRD EILVLAS+VLGHLARAGGAMTADEVE QVK+ALDWLRG+RVEYRRFAAVLILKEM
Sbjct: 119 TKRDPEILVLASRVLGHLARAGGAMTADEVERQVKIALDWLRGNRVEYRRFAAVLILKEM 178
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 179 AENASTVFNVHVPEFVDAIWVALRDPALPVRERAVEALRACLRVIEKRETRWRVQWYYRM 238
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLG+NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 239 FEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 298
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICM+HIL+VL+ P +RDSGFIALGEMAGALDGEL HYL
Sbjct: 299 ITSLLPRIAHFLRDRFVTNYLTICMDHILSVLKAPQDRDSGFIALGEMAGALDGELIHYL 358
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTIT+HLREAIAPRR KPSLEALACVG+IA+AMG MEPHVRGLLDIMFS GLST LV+A
Sbjct: 359 PTITTHLREAIAPRRIKPSLEALACVGSIAKAMGSAMEPHVRGLLDIMFSTGLSTVLVEA 418
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
LEQI+ SIPSLLPTIQ RLLD IS VLSKSHY RPA + RG ++N+PQQVS+LNGSA
Sbjct: 419 LEQISTSIPSLLPTIQGRLLDSISMVLSKSHYHLGRPAQSVGRGIIINVPQQVSELNGSA 478
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGH+LLEFAR+SVV+YLDDED ATRKDAALCCC+L+A+SFSG++ +
Sbjct: 479 LVQLALQTLARFNFKGHELLEFARESVVVYLDDEDGATRKDAALCCCRLIASSFSGMACS 538
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
FG+SR R+GGKRR L+EELVEKLLI+AVADADVTVRHSIF+SL+G+RGFD++LAQAD
Sbjct: 539 HFGSSRLTRSGGKRRILVEELVEKLLISAVADADVTVRHSIFTSLHGDRGFDEYLAQADN 598
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
LSA+FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ SAD+KC+E
Sbjct: 599 LSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SADSKCKE 657
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKL+GCLIRNCERLI PY APIHKALVARL++ +NAN G ISGVLVTVGDLARVGG
Sbjct: 658 ESAKLIGCLIRNCERLILPYTAPIHKALVARLVD---VNANTGTISGVLVTVGDLARVGG 714
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
F MRQYI ELMPLIVEALLDGAAV+KREVAV+TLGQVVQSTGYVITPYNEYPQLLGLLLK
Sbjct: 715 FAMRQYIPELMPLIVEALLDGAAVSKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLK 774
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+LNGELVWSTRREVLKVLGIMGALDPH HKRNQ+ L G HG+VTR+ASDS Q IQ MDEF
Sbjct: 775 LLNGELVWSTRREVLKVLGIMGALDPHLHKRNQKTLPGPHGDVTRSASDSSQQIQSMDEF 834
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
PMDLWPSFA+S+DYYSTVAINSLMRILRDPSLASYH KVVGSLMFIFKSMGLGCVPYLPK
Sbjct: 835 PMDLWPSFASSDDYYSTVAINSLMRILRDPSLASYHLKVVGSLMFIFKSMGLGCVPYLPK 894
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLPDLFHTVRTC+D LKD+ITWKLGTLVSIVRQHIRKYLQ+L SLISE WS+F+LPA R
Sbjct: 895 VLPDLFHTVRTCEDSLKDFITWKLGTLVSIVRQHIRKYLQDLLSLISEFWSAFTLPAPAR 954
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
G PVLHLV+QLCLALNDEFRT+LPVILP CIQVLSDAERCNDYTYVLDILHTLEVFG
Sbjct: 955 PGLGYPVLHLVEQLCLALNDEFRTYLPVILPGCIQVLSDAERCNDYTYVLDILHTLEVFG 1014
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIR FKVDA VDIRRAAI+TLT LIPRVQVTGHISSLVHHLKLVLDG
Sbjct: 1015 GTLDEHMHLLLPALIRFFKVDASVDIRRAAIKTLTSLIPRVQVTGHISSLVHHLKLVLDG 1074
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL K+RLRHKEFEEIEGRL+RREPLIL
Sbjct: 1075 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLQKYRLRHKEFEEIEGRLQRREPLIL 1134
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQ-----------ASQRST 1188
G TA+Q+L+RR+PVEVISDPL+DV+ DPYEDG+DA K LRGHQ ASQRST
Sbjct: 1135 GITASQRLNRRLPVEVISDPLDDVEIDPYEDGSDAHK-LRGHQVNDGRLRTAGEASQRST 1193
Query: 1189 KEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKH 1248
KEDWAEWMRH SI+LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCW+QLN TSQK
Sbjct: 1194 KEDWAEWMRHFSIQLLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNETSQKQ 1253
Query: 1249 LVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
LV++LEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK
Sbjct: 1254 LVRNLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1313
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
EMEFEGARS +MDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LD QLKESWYEKLQ
Sbjct: 1314 EMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDFQLKESWYEKLQ 1373
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RWDDALKAYT KASQA++PH+VL+ATLG+MRCLAALA+W+ELN LCKE+WTPAEPAARLE
Sbjct: 1374 RWDDALKAYTAKASQATSPHLVLDATLGKMRCLAALAQWDELNILCKEFWTPAEPAARLE 1433
Query: 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488
MAPMAANAAWNMGEWDQMAEYVSRLDDGDE+KLRGLGNTAA+ DGSS+GTFFRAVLLVRR
Sbjct: 1434 MAPMAANAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASSDGSSSGTFFRAVLLVRR 1493
Query: 1489 GK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526
GK VLESYERAYSNMVRVQQLSELE
Sbjct: 1494 GKYDEAREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELE-------------- 1539
Query: 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRIS 1586
ERI+G K NVEVWQALL VRALVLPP EDVETWLKFASLCRKSGRIS
Sbjct: 1540 -------------ERIEGAKSNVEVWQALLVVRALVLPPVEDVETWLKFASLCRKSGRIS 1586
Query: 1587 QARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646
QA+STLVKLLQYDPE S ENVRYHGPPQVM AYLKYQWSLGED KR+EAF RLQ LAMEL
Sbjct: 1587 QAKSTLVKLLQYDPEKSPENVRYHGPPQVMLAYLKYQWSLGEDSKRREAFIRLQNLAMEL 1646
Query: 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706
SS P IQ +S T + +VPL+ARVYL LGSW+ +L PGL DESI +I+ A+ ATQ
Sbjct: 1647 SSAPSIQPVTPSSFTNGLNPSVPLLARVYLNLGSWQWSLSPGLVDESIKDILNAFTKATQ 1706
Query: 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL 1766
A KW KAWH WALFNTAVMSHYTLRG P VA QFV AVTGYFHSIACAA++KGVDDSL
Sbjct: 1707 YANKWAKAWHKWALFNTAVMSHYTLRGFPDVAAQFVAAAVTGYFHSIACAANSKGVDDSL 1766
Query: 1767 QDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSL 1826
QDILRLLTLWFNHGAT EVQ+AL+KGF+ VNINTWLVVLPQIIARIHSNN AVRELIQSL
Sbjct: 1767 QDILRLLTLWFNHGATAEVQMALKKGFSLVNINTWLVVLPQIIARIHSNNHAVRELIQSL 1826
Query: 1827 LVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGT 1870
LVRIGQ+HPQALMYPLLVACKSISNLR+AAAQEVVDKVRQHSG
Sbjct: 1827 LVRIGQNHPQALMYPLLVACKSISNLRKAAAQEVVDKVRQHSGV 1870
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297852694|ref|XP_002894228.1| hypothetical protein ARALYDRAFT_474140 [Arabidopsis lyrata subsp. lyrata] gi|297340070|gb|EFH70487.1| hypothetical protein ARALYDRAFT_474140 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3160 bits (8192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1553/1898 (81%), Positives = 1685/1898 (88%), Gaps = 33/1898 (1%)
Query: 1 MASTSQSLRYIGPPAPGAGGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ GP A +GGGS D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP L VRERAVEALRACLRVIEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+GLS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSGLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T IRG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTVIRGSTVGMSPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF SLYGN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVSLYGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE SSADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLELSSADNKCRE 673
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERL+ PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 674 ESAKLLGCLVRNCERLVLPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 733
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP LLGLLLK
Sbjct: 734 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 793
Query: 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
+L G+LVWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 794 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 853
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 854 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 913
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 914 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 973
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 974 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1033
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1034 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1093
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SIHKLLLKHRLRHKEFEEI R R+REPLI+
Sbjct: 1094 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHSRWRKREPLIV 1153
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR------GHQASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ +ASQRSTKEDW
Sbjct: 1154 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1213
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1214 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1273
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1274 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1333
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1334 GPRSRRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1393
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433
LKAYT KASQ SNPH+VLEATLG+MRCLAALARWEELNNLCKEYW+PAEP+ARLEMAPMA
Sbjct: 1394 LKAYTLKASQTSNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1453
Query: 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--- 1490
A AAWNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRRGK
Sbjct: 1454 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRGKYDE 1513
Query: 1491 -------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRR 1531
VLESYERAYSNMVRVQQLSELEEVI+Y TLPVGN +AE RR
Sbjct: 1514 AREYVERARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIEYYTLPVGNTIAEERR 1573
Query: 1532 AIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARST 1591
A+IRNMWT+RIQG+KRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA+ST
Sbjct: 1574 ALIRNMWTQRIQGSKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAKST 1633
Query: 1592 LVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651
L+KLL +DPE S EN++YHGPPQVM YLKYQWSLGE+ KRKEAF +LQ L ELSS P
Sbjct: 1634 LLKLLPFDPEVSPENMQYHGPPQVMLGYLKYQWSLGEERKRKEAFTKLQILTRELSSVPH 1693
Query: 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711
QS S+ ++ NVPL+ARV LKLG+W+ AL GL+D SI EI A+ +T+ A KW
Sbjct: 1694 SQSDILASMVSSKGANVPLLARVNLKLGTWQWALSSGLNDGSIQEIRDAFDKSTRYAPKW 1753
Query: 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771
KAWH+WALFNTAVMSHY RG +A QFVV AVTGYF+SIACAA+AKGVDDSLQDILR
Sbjct: 1754 AKAWHTWALFNTAVMSHYISRG--QIASQFVVSAVTGYFYSIACAANAKGVDDSLQDILR 1811
Query: 1772 LLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG 1831
LLTLWFNHGAT +VQ AL+ GF+HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL+RIG
Sbjct: 1812 LLTLWFNHGATADVQTALKTGFSHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLIRIG 1871
Query: 1832 QSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1869
++HPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG
Sbjct: 1872 ENHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG 1909
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1874 | ||||||
| TAIR|locus:2031090 | 2481 | TOR "target of rapamycin" [Ara | 0.805 | 0.608 | 0.785 | 0.0 | |
| ASPGD|ASPL0000006879 | 2385 | torA [Emericella nidulans (tax | 0.452 | 0.355 | 0.378 | 1.2e-306 | |
| POMBASE|SPBC216.07c | 2337 | tor2 "phosphatidylinositol kin | 0.528 | 0.424 | 0.384 | 4.2e-303 | |
| UNIPROTKB|E1BFB4 | 2551 | MTOR "Uncharacterized protein" | 0.750 | 0.551 | 0.367 | 1.7e-297 | |
| UNIPROTKB|P42345 | 2549 | MTOR "Serine/threonine-protein | 0.750 | 0.551 | 0.367 | 2.7e-297 | |
| UNIPROTKB|E2R2L2 | 2550 | MTOR "Uncharacterized protein" | 0.750 | 0.551 | 0.367 | 9.1e-297 | |
| RGD|68371 | 2549 | Mtor "mechanistic target of ra | 0.750 | 0.551 | 0.366 | 1.2e-296 | |
| MGI|MGI:1928394 | 2549 | Mtor "mechanistic target of ra | 0.751 | 0.552 | 0.365 | 1.2e-296 | |
| UNIPROTKB|F1RHR8 | 2551 | MTOR "Uncharacterized protein" | 0.751 | 0.551 | 0.366 | 1.5e-296 | |
| UNIPROTKB|F1NUX4 | 2455 | MTOR "Uncharacterized protein" | 0.744 | 0.568 | 0.370 | 2.5e-292 |
| TAIR|locus:2031090 TOR "target of rapamycin" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6045 (2133.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 1195/1522 (78%), Positives = 1297/1522 (85%)
Query: 1 MASTSQSLRYIXXXXXXXXXXSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGG 60
MAS SQS R+ S D LNR++ADLC+ GNPKEGA LA RKH+EE RDL G
Sbjct: 16 MASPSQSHRFCGPSATASGGGSFDTLNRVIADLCSRGNPKEGAPLAFRKHVEEAVRDLSG 75
Query: 61 EAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120
EA SRFM+QLYDRI+ L+ES D AEN+GALRAIDEL ++ GENA+KVS+F+ YMRTVFE
Sbjct: 76 EASSRFMEQLYDRIANLIESTDVAENMGALRAIDELTEIGFGENATKVSRFAGYMRTVFE 135
Query: 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180
+KRD EILVLAS+VLGHLARAGGAMT+DEVEFQ+K A DWLR DRVEYRRFAAVLILKEM
Sbjct: 136 LKRDPEILVLASRVLGHLARAGGAMTSDEVEFQMKTAFDWLRVDRVEYRRFAAVLILKEM 195
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTXXXXXXXXXXXXXXXXXIEKRETRWRVQWYYRM 240
AENASTVFNVHV EFVDAIWVALRDP IEKRETRWRVQWYYRM
Sbjct: 196 AENASTVFNVHVPEFVDAIWVALRDPQLQVRERAVEALRACLRVIEKRETRWRVQWYYRM 255
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS
Sbjct: 256 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 315
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
ITSLLPRIAHFLRDRFVTNYL ICMNHILTVLRIPAER SGFIALGEMAGALDGEL HYL
Sbjct: 316 ITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRIPAERASGFIALGEMAGALDGELIHYL 375
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
PTI SHLR+AIAPR+G+P LEA+ACVGNIA+AMG +E HVR LLD+MFS+ LS+TLVDA
Sbjct: 376 PTIMSHLRDAIAPRKGRPLLEAVACVGNIAKAMGSTVETHVRDLLDVMFSSSLSSTLVDA 435
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
L+QIT+SIPSLLPT+QDRLLDCIS VLSKSHYSQA+P T +RG+ + + Q SD + SA
Sbjct: 436 LDQITISIPSLLPTVQDRLLDCISLVLSKSHYSQAKPPVTIVRGSTVGMAPQSSDPSCSA 495
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
VQLALQTLARFNFKGHDLLEFAR+SVV+YLDDED ATRKDAALCCC+L+ANS SG+ T
Sbjct: 496 QVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDAATRKDAALCCCRLIANSLSGI--T 553
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADC 600
QFG+SRS R GG+RRRL+EE+VEKLL AVADADVTVR SIF +L+GN+ FDD+LAQAD
Sbjct: 554 QFGSSRSTRAGGRRRRLVEEIVEKLLRTAVADADVTVRKSIFVALFGNQCFDDYLAQADS 613
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
L+AIFA+LNDED DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE S ADNKCRE
Sbjct: 614 LTAIFASLNDEDLDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLELS-ADNKCRE 672
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
ESAKLLGCL+RNCERLI PY+AP+ KALVARL EGTG+NANN I++GVLVTVGDLARVGG
Sbjct: 673 ESAKLLGCLVRNCERLILPYVAPVQKALVARLSEGTGVNANNNIVTGVLVTVGDLARVGG 732
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXX 780
MRQYI ELMPLIVEAL+DGAAV KREVAVSTLGQVVQSTGYV+TPY EYP
Sbjct: 733 LAMRQYIPELMPLIVEALMDGAAVAKREVAVSTLGQVVQSTGYVVTPYKEYPLLLGLLLK 792
Query: 781 XXXXXXVWSTRREVLKVLGIMGALDPHAHKRNQQ-LSGSHGEVTRAASDSGQHIQPMDEF 839
VWSTRREVLKVLGIMGALDPH HKRNQQ LSGSHGEV R DSGQ I +DE
Sbjct: 793 LLKGDLVWSTRREVLKVLGIMGALDPHVHKRNQQSLSGSHGEVPRGTGDSGQPIPSIDEL 852
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899
P++L PSFATSEDYYSTVAINSLMRILRD SL SYH++VV SLM IFKSMGLGCVPYLPK
Sbjct: 853 PVELRPSFATSEDYYSTVAINSLMRILRDASLLSYHKRVVRSLMIIFKSMGLGCVPYLPK 912
Query: 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959
VLP+LFHTVRT D+ LKD+ITW LGTLVSIVRQHIRKYL EL SL+SELWSSF+LP R
Sbjct: 913 VLPELFHTVRTSDENLKDFITWGLGTLVSIVRQHIRKYLPELLSLVSELWSSFTLPGPIR 972
Query: 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG 1019
RGLPVLHL++ LCLALNDEFRT+LPVILPC IQVL DAER NDYTYV DILHTLEVFG
Sbjct: 973 PSRGLPVLHLLEHLCLALNDEFRTYLPVILPCFIQVLGDAERFNDYTYVPDILHTLEVFG 1032
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
GTLDEHMHLLLPALIRLFKVDAPV IRR AI+TLTR+IP VQVTGHIS+LVHHLKLVLDG
Sbjct: 1033 GTLDEHMHLLLPALIRLFKVDAPVAIRRDAIKTLTRVIPCVQVTGHISALVHHLKLVLDG 1092
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLIL 1139
KNDELRKDAVDALCCLAHALGEDFTIFI SI EFEEI R RRREPLI+
Sbjct: 1093 KNDELRKDAVDALCCLAHALGEDFTIFIESIHKLLLKHRLRHKEFEEIHARWRRREPLIV 1152
Query: 1140 GSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLR-GH-----QASQRSTKEDWA 1193
+TA QQLSRR+PVEVI DP+ + + DP+E+GTD Q+ G +ASQRSTKEDW
Sbjct: 1153 ATTATQQLSRRLPVEVIRDPVIENEIDPFEEGTDRNHQVNDGRLRTAGEASQRSTKEDWE 1212
Query: 1194 EWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSL 1253
EWMRH SIELLKESPSPALRTCA+LAQLQPFVGRELFAAGFVSCW+QLN +SQK LV+SL
Sbjct: 1213 EWMRHFSIELLKESPSPALRTCAKLAQLQPFVGRELFAAGFVSCWAQLNESSQKQLVRSL 1272
Query: 1254 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFE 1313
EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCR FAKALHYKEMEFE
Sbjct: 1273 EMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRVFAKALHYKEMEFE 1332
Query: 1314 GARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDA 1373
G RS RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQ+ LDVQLKESWYEKLQRWDDA
Sbjct: 1333 GPRSKRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLDVQLKESWYEKLQRWDDA 1392
Query: 1374 LKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXX 1433
LKAYT KASQ +NPH+VLEATLG+MRCLAALARWEELNNLCKEYW+
Sbjct: 1393 LKAYTLKASQTTNPHLVLEATLGQMRCLAALARWEELNNLCKEYWSPAEPSARLEMAPMA 1452
Query: 1434 XXXXWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLE 1493
WNMGEWDQMAEYVSRLDDGDE+KLRGL + ++GDGSSNGTFFRAVLLVRR K E
Sbjct: 1453 AQAAWNMGEWDQMAEYVSRLDDGDETKLRGLASPVSSGDGSSNGTFFRAVLLVRRAKYDE 1512
Query: 1494 SYERAYSNMVRVQQLSELEEVI 1515
+ R Y R +EL ++
Sbjct: 1513 A--REYVERARKCLATELAALV 1532
|
|
| ASPGD|ASPL0000006879 torA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 1.2e-306, Sum P(3) = 1.2e-306
Identities = 345/912 (37%), Positives = 497/912 (54%)
Query: 849 TSEDYYSTVAINSLMR-ILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHT 907
++E+YY TV I++LM+ ILR+ SLA YH V+ +++ IFK++GL CVP+L +++P
Sbjct: 812 SNEEYYPTVVIHTLMQNILRENSLAQYHSAVIDAIVTIFKTLGLKCVPFLGQIIPGFISV 871
Query: 908 VR-TCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELW-SSFSLPATNRTYRGLP 965
+R + L+ Y ++ LV+IVRQHIR +L E+ +I E W +S+ + AT
Sbjct: 872 IRGSPSSRLESYFN-QMAILVNIVRQHIRAFLPEIIEVIREFWDTSYQVQAT-------- 922
Query: 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH 1025
+L LV + +L EF+ +L ++P + L + + ILH+ VFG + +E+
Sbjct: 923 ILSLVDAIAKSLEGEFKKYLANLIPPMLDTL-EKDNTPRRQPSERILHSFLVFGSSGEEY 981
Query: 1026 MHLLLPALIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDEL 1084
MHL++P+++RLF + P IR++AI++LT+L +V V+ S +VH L V+ G + L
Sbjct: 982 MHLIVPSIVRLFDRSQNPASIRKSAIDSLTKLSRQVNVSDFASLIVHSLSRVVAGNDRML 1041
Query: 1085 RKDAVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAA 1144
R+ A+D +C L LG+DF +I + ++ + +L++ +PL
Sbjct: 1042 RQAAMDCICSLIFQLGQDFNHYIHLLNKVLKHHQVNHVNYQILVTKLQKGDPL------P 1095
Query: 1145 QQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELL 1204
Q L+ ++D N + + + Q ASQ+ST+EDW EW+R S+ELL
Sbjct: 1096 QDLNPDESYAPLADDANYAEIGQKKMVVNQQHLKNAWDASQKSTREDWQEWIRRFSVELL 1155
Query: 1205 KESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPP 1264
KESPSPALR CA LA + + R+LF A FVSCW++L Q+ LV+S+E A +SPNIPP
Sbjct: 1156 KESPSPALRACASLAGIYQPLARDLFNAAFVSCWTELYDQYQEELVRSIEKALTSPNIPP 1215
Query: 1265 EILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP 1324
EIL LLNLAEFMEHD+K LPIDIR LG A KC AFAKALHYKE+EFE D N
Sbjct: 1216 EILQILLNLAEFMEHDDKALPIDIRTLGKYAAKCHAFAKALHYKELEFE------QDQNS 1269
Query: 1325 VAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQA 1384
AV EALI INNQL Q +AA+GIL AQ DV+LKE+W+EKLQRW++AL AY K +
Sbjct: 1270 GAV-EALITINNQLQQSDAAIGILRKAQAYRDVELKETWFEKLQRWEEALAAY--KRREK 1326
Query: 1385 SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWD 1444
+P T+G+MRCL AL W+ L++L +E W W G+W+
Sbjct: 1327 IDPDS-FGITMGKMRCLHALGEWKVLSDLAQEKWNQASLEHRKSIAPLAAAAAWGRGQWE 1385
Query: 1445 QMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFF----RAVLLVRRGKVL-ESYERAY 1499
M Y+ + + + A + + + R L +L ESY RAY
Sbjct: 1386 LMDSYLGVMKEQSPDRSFFGAILAIHRNQFDEAIMYIEKARNGLDTELSALLGESYNRAY 1445
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
+ +VRVQ L+ELEE+I Y VG+P R+ +R W R+ G ++NVEVWQ
Sbjct: 1446 NVVVRVQMLAELEEIITY-KQNVGDPE---RQEAMRQTWNRRLLGCQQNVEVWQRMLKVR 1501
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY 1619
P E+++ W+KFA+LCRKS R+ A +L L P+ + R PP+V YA
Sbjct: 1502 ALVTTPRENLDMWIKFANLCRKSNRMGLAERSLASLETVIPD-GNGGTRTISPPEVTYAR 1560
Query: 1620 LKYQWSLGED-----LKRK------EAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNV 1668
LK+ W+ G + R+ E F R L S I
Sbjct: 1561 LKFSWATGRQREALHMLREFTANLTEDFTRFNALVASQSDHNGINGVNGIAEGNHTDIMA 1620
Query: 1669 ------------PLIARVYLKLGSWKRALPPG-LDDESIPEIIAAYRNATQCATKWGKAW 1715
L+A+ YL+LG W+ AL G E + E++ AY AT+ KAW
Sbjct: 1621 LRERVGDVNKFRKLLAKSYLRLGEWQTALQRGDWRPEHVREVLNAYSAATRYNRDSYKAW 1680
Query: 1716 HSWALFNTAVMS 1727
HSWAL N V++
Sbjct: 1681 HSWALANFEVVT 1692
|
|
| POMBASE|SPBC216.07c tor2 "phosphatidylinositol kinase Tor2" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1772 (628.8 bits), Expect = 4.2e-303, Sum P(2) = 4.2e-303
Identities = 398/1036 (38%), Positives = 594/1036 (57%)
Query: 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV 908
+S++YY TV I +LM IL+DPSL +H V+ ++M+IFK+MGL C P+L +++P+ +
Sbjct: 798 SSDEYYPTVVITALMSILKDPSLTIHHTAVIQAVMYIFKTMGLRCAPFLSQIIPEFIAVM 857
Query: 909 RTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968
RTC + ++ +L LV IVRQHIR +L +LF LI + W+ P +N + +L
Sbjct: 858 RTCPTNILEFYFQQLSILVLIVRQHIRSFLPDLFKLIKDFWN----PHSNLQFT---ILS 910
Query: 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHL 1028
L++ L A+ EF+ +LP +L +Q+ D++ D +LH VFG TL ++ H+
Sbjct: 911 LIESLARAMQGEFKPYLPSLLVMMLQIF-DSDVSVDSVSTKKVLHAFIVFGDTLADYFHM 969
Query: 1029 LLPALIRLF-KVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKD 1087
LL ++RL+ + D + I+ + + T+ RL + ++ + S ++H + +L N L +
Sbjct: 970 LLDPILRLYERNDVSIGIKESIMITIGRLSMVINLSEYASRIIHPVMRMLSCNNASLIRV 1029
Query: 1088 AVDALCCLAHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQL 1147
++D +C L + L DF IFIP I + + + + +PL + ++
Sbjct: 1030 SMDTVCALIYQLNVDFAIFIPMIDKCLKMNGVTHETYSILVEQFLQEQPLPIKLNPYEKY 1089
Query: 1148 SRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH-QASQRSTKEDWAEWMRHLSIELLKE 1206
+ ++V++ D+ S Q+ LR +ASQRSTK+DW EW+R L + LL+E
Sbjct: 1090 DKP-KLDVVASAA-DITSKKLPVN---QEILRNAWEASQRSTKDDWQEWIRRLGVALLRE 1144
Query: 1207 SPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEI 1266
SPS ALR CA LA + R+LF A FVSCWS+L Q+ LV+S+E+A +SP+I PEI
Sbjct: 1145 SPSHALRACAALAAAYQPLARDLFNASFVSCWSELYDHFQEELVKSIEIALTSPHISPEI 1204
Query: 1267 LATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA 1326
+ LLNLAEFMEHD+KPLPIDIR LGA A KC AFAKALHYKE+EF + V
Sbjct: 1205 IQILLNLAEFMEHDDKPLPIDIRTLGAYAAKCHAFAKALHYKELEF--IEEELVTKPSVD 1262
Query: 1327 VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNK-ASQAS 1385
+EALI INNQL Q +AA+GIL +AQ+ + LKE+WYEKLQRW+DAL AY + A+ A
Sbjct: 1263 TIEALISINNQLQQPDAAIGILKHAQQHDKMNLKETWYEKLQRWEDALSAYEKREAAGAG 1322
Query: 1386 NPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQ 1445
N E T+G++RCL AL W+ L+ L +E W W +G+W+Q
Sbjct: 1323 N----FEITMGKLRCLHALGEWDRLSQLAQENWIHAGHDARRYIAPLSVAAAWGLGQWEQ 1378
Query: 1446 MAEYVS--RLDDGDESKLRGLG--NTAANGDGSSNGTFFRAVLLVRRGKVL-ESYERAYS 1500
M EY+S + + D++ + + + + +S T R +L ++ ESY RAYS
Sbjct: 1379 MDEYISVMKSESPDKAFFNAIVALHRSQFEEAASYITRARDLLDTELTALVGESYNRAYS 1438
Query: 1501 NMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXXX 1560
VRVQ LSELEE+I Y P R +I+ W R++G +RNV+VWQ
Sbjct: 1439 VAVRVQMLSELEEIITYKKAE-DKPEV---REMIKKTWVRRLKGCQRNVDVWQRMLRIRS 1494
Query: 1561 XXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYL 1620
P +++E W+KFA+LCRKSGRIS A+ +L LL+ D + V P ++YA L
Sbjct: 1495 LVISPRDNMEMWIKFANLCRKSGRISLAKKSLNLLLEDDENLDNSLVLKKTHPSIVYANL 1554
Query: 1621 KYQWSLGEDLKRKEAFARLQT-LAMELSSCPVIQXXXXXXXXXXXXXNVP----LIARVY 1675
K+ W++ + K + + L +++ P + + L+AR Y
Sbjct: 1555 KFLWAVDDKRKALNSMQEFTSQLISDINVDPALFVQSTSVNTQKSQEEIQYYFHLLARCY 1614
Query: 1676 LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS--HYTLRG 1733
K G W++ + + S ++ +Y ATQ +KW KAWHSWAL N + +
Sbjct: 1615 HKQGQWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHSWALANFEAVKFLEQSEEQ 1674
Query: 1734 LPSVA-PQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKG 1792
+PS A Q+++ AV G+F SIA + KG +LQD LRLL LWF G V L G
Sbjct: 1675 IPSAAYEQYIIPAVKGFFKSIALS---KG---NLQDTLRLLNLWFKFGNNSNVINTLNVG 1728
Query: 1793 FAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNL 1852
+ VNI+ WL V+PQ+IARIH+++ +VR+ + LL +G++HPQAL+YPL VA KS S+
Sbjct: 1729 ISTVNIDIWLDVIPQLIARIHASSLSVRKSVHQLLSDVGRAHPQALVYPLTVAAKSQSSA 1788
Query: 1853 RRAAAQEVVDKVRQHS 1868
R+ AA ++D ++ HS
Sbjct: 1789 RQNAALAIMDSLKTHS 1804
|
|
| UNIPROTKB|E1BFB4 MTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 1.7e-297, Sum P(3) = 1.7e-297
Identities = 549/1492 (36%), Positives = 828/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSSGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+AP+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|P42345 MTOR "Serine/threonine-protein kinase mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2275 (805.9 bits), Expect = 2.7e-297, Sum P(3) = 2.7e-297
Identities = 549/1492 (36%), Positives = 827/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+AP+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEAPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|E2R2L2 MTOR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2269 (803.8 bits), Expect = 9.1e-297, Sum P(3) = 9.1e-297
Identities = 548/1492 (36%), Positives = 826/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTALPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRPTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSTRKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| RGD|68371 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2273 (805.2 bits), Expect = 1.2e-296, Sum P(3) = 1.2e-296
Identities = 547/1492 (36%), Positives = 825/1492 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ A + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFVIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSSQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHENVRYHGPPQVMY 1617
P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H H PQV Y
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTVH--PQVTY 1698
Query: 1618 AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLK 1677
AY+K W + ++ +AF +Q + Q L+AR +LK
Sbjct: 1699 AYMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLK 1753
Query: 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
LG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1754 LGEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| MGI|MGI:1928394 Mtor "mechanistic target of rapamycin (serine/threonine kinase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2273 (805.2 bits), Expect = 1.2e-296, Sum P(3) = 1.2e-296
Identities = 545/1490 (36%), Positives = 824/1490 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRSSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKTVQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ A + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPGLTTLPEASDV---ASITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSQGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRSTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSSQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAASGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKED 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNMGEWDQM 1446
P ++L GRMRCL AL W +L+ C E WT W +G+WD M
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLGQWDSM 1529
Query: 1447 AEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERAY 1499
EY + D D + R + A + D + +A LL + ESY RAY
Sbjct: 1530 EEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRAY 1587
Query: 1500 SNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXXX 1559
MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 GAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQKILMVR 1640
Query: 1560 XXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY 1619
P ED+ TWLK+ASLC KSGR++ A TLV LL DP ++ PQV YAY
Sbjct: 1641 SLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTAHPQVTYAY 1700
Query: 1620 LKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLKLG 1679
+K W + ++ +AF +Q + Q L+AR +LKLG
Sbjct: 1701 MKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQELHKLMARCFLKLG 1755
Query: 1680 SWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1756 EWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1804
|
|
| UNIPROTKB|F1RHR8 MTOR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2267 (803.1 bits), Expect = 1.5e-296, Sum P(3) = 1.5e-296
Identities = 547/1491 (36%), Positives = 826/1491 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHILTV 331
+ M ++ +V + VL+ ++ L++++I +LLPR+A F F T YL+ MNH+L+
Sbjct: 364 DLMEEKFDQVCQWVLKCRNSKNSLIQMTILNLLPRLAAFRPSAFTDTQYLQDTMNHVLSC 423
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----RGKP-SLEA--L 383
++ ER + F ALG ++ A+ E YLP + +R A+ P+ R K ++A
Sbjct: 424 VKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDIIRAALPPKDFAHKRQKAMQVDATVF 483
Query: 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 484 TCISMLARAMGPGIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 543
Query: 444 SFVLSKS---HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
S VL H + A + + + SD+ GS + LAL+TL F F+GH L
Sbjct: 544 SLVLMHKPLRHPGMPKGLAHQLASPSLTTLPEASDV-GS--ITLALRTLGSFEFEGHSLT 600
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+F R +L+ E K R +AA C +L+ S +S S++ +++ +
Sbjct: 601 QFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSVHLISGHAHVVSQT------AVQVVAD 654
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ KLL+ + D D +R+ + +SL + FD LAQA+ L A+F ALND+ F++RE AI
Sbjct: 655 VLSKLLVVGITDPDPDIRYCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELAI 712
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRPY
Sbjct: 713 CTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGI-GRIKEQSARMLGHLVSNAPRLIRPY 771
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L D
Sbjct: 772 MEPILKALILKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQD 830
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLGI 800
+ + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG+
Sbjct: 831 SSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLGL 890
Query: 801 MGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857
+GALDP+ HK N + S V+ + S S Q M + +++Y V
Sbjct: 891 LGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPAV 950
Query: 858 AINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKD 917
++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD +++
Sbjct: 951 SMVALMRIFRDQSLSHHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIRE 1010
Query: 918 YITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977
++ +LG LVS V+ HIR Y+ E+ +L+ E W N + + +L L++Q+ +AL
Sbjct: 1011 FLFQQLGMLVSFVKSHIRPYMDEIVTLMREFW------VMNTSIQSTIIL-LIEQIVVAL 1063
Query: 978 NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037
EF+ +LP ++P ++V + + +L +++FG LD+++HLLLP +++LF
Sbjct: 1064 GGEFKLYLPQLIPHMLRVFMH-DNSPGRIVSIKLLAAIQLFGANLDDYLHLLLPPIVKLF 1122
Query: 1038 KV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ P+ R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1123 DAPEVPLPSRKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRPTAMDTLSSLV 1181
Query: 1097 HALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVI 1156
LG+ + IFIP + ++ + R+ + L R+
Sbjct: 1182 FQLGKKYQIFIPMVNKVLVRHRINHQRYDILICRIVKGYTLADEEEDPLIYQHRMLRSGQ 1241
Query: 1157 SDPL--NDVDSDPYEDGTDAQKQL-RGHQASQRSTKEDWAEWMRHLSIELLKESPSPALR 1213
D L V++ P + + L + A++R +K+DW EW+R LS+ELLK+S SP+LR
Sbjct: 1242 GDALASGPVETGPMKKLHVSTINLQKAWGAARRVSKDDWLEWLRRLSLELLKDSSSPSLR 1301
Query: 1214 TCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNL 1273
+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I E+ TLLNL
Sbjct: 1302 SCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDIA-EVTQTLLNL 1360
Query: 1274 AEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVV 1328
AEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ + P A++
Sbjct: 1361 AEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT------P-AIL 1413
Query: 1329 EALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKAYTNKA-SQASN 1386
E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL AY K + +
Sbjct: 1414 ESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVAYDKKMDTNKDD 1473
Query: 1387 PHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXXXXWNM-GEWDQ 1445
P ++L GRMRCL AL W +L+ C E WT W + G+WD
Sbjct: 1474 PELML----GRMRCLEALGEWGQLHQQCCEKWTLVNDETQAKMARMAAAAAWGLAGQWDS 1529
Query: 1446 MAEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGKVL--ESYERA 1498
M EY + D D + R + A + D + +A LL + ESY RA
Sbjct: 1530 MEEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELTAMAGESYSRA 1587
Query: 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQXXXXX 1558
Y MV LSELEEVI Y +P RR IIR +W ER+QG +R VE WQ
Sbjct: 1588 YGAMVSCHMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRIVEDWQRILMV 1640
Query: 1559 XXXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA 1618
P ED+ TWLK+ASLC KSGR++ A TLV LL DP ++ G PQV YA
Sbjct: 1641 RSLVVSPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPLPTGHPQVTYA 1700
Query: 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXXNVPLIARVYLKL 1678
Y+K W + ++ +AF +Q + Q L+AR +LKL
Sbjct: 1701 YMKNMW---KSARKIDAFQHMQHFVQTMQQ--QAQRAIATEDQQHKQELHKLMARCFLKL 1755
Query: 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729
G W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N + HY
Sbjct: 1756 GEWQLNLQ-GINESTIPKVLQYYSAATEHDRSWYKAWHAWAVMNFEAVLHY 1805
|
|
| UNIPROTKB|F1NUX4 MTOR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2293 (812.2 bits), Expect = 2.5e-292, Sum P(3) = 2.5e-292
Identities = 557/1503 (37%), Positives = 840/1503 (55%)
Query: 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN-YLKICMNHILTV 331
+ M ++ +V + VL+ ++ L+++++ +LLPR+A F F + YL MNH+L+
Sbjct: 282 DLMEEKFDQVCQWVLKCRTSKNSLIQMTVLNLLPRLAAFRPSAFTADQYLPDTMNHVLSC 341
Query: 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR----RGKPSLEALA--- 384
++ ER + F ALG ++ A+ E YLP + ++ A+ P+ + + S++ A
Sbjct: 342 VKKEKERTAAFQALGLLSVAVRSEFQAYLPKVLEIIKAALPPKDFAHKRQKSVQVDATVF 401
Query: 385 -CVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCI 443
C+ +ARAMGP ++ ++ LL+ M + GLS L L ++ IP L IQD LL +
Sbjct: 402 TCISMLARAMGPSIQQDIKELLEPMLAVGLSPALTAVLYDLSRQIPQLKKDIQDGLLKML 461
Query: 444 SFVLSKS---HYSQARPAATPIRG-NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL 499
S VL H + A + ++ NIP+ SD+ GS + LAL+TL F F+GH L
Sbjct: 462 SLVLMHKPLRHPGMPKGLAHQLASPSLTNIPE-ASDV-GS--ITLALRTLGSFEFEGHSL 517
Query: 500 LEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559
+F R +L+ E K R +AA C +L+ S +S S++ +++
Sbjct: 518 TQFVRHCADHFLNSEHKEIRMEAARTCSRLLTPSIHLISGHAHVVSQT------AVQVVA 571
Query: 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYA 619
+++ KLL+ + D D +R + +SL + FD LAQA+ L A+F ALND+ F++RE A
Sbjct: 572 DVLSKLLVVGITDPDPDIRFCVLASL--DERFDAHLAQAENLQALFVALNDQVFEIRELA 629
Query: 620 ISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679
I GRLS NPA+V+P LR+ LIQ+LT LE S + +E+SA++LG L+ N RLIRP
Sbjct: 630 ICTVGRLSSMNPAFVMPFLRKMLIQILTELEHSGV-GRIKEQSARMLGHLVSNAPRLIRP 688
Query: 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739
Y+ PI KAL+ +L + + N G+I+ VL T+G+LA+V G MR+++ EL +I++ L
Sbjct: 689 YMEPILKALIVKLKDPDP-DPNPGVINNVLATIGELAQVSGLEMRKWVDELFIIIMDMLQ 747
Query: 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQXXXXXXXXXXXXXVWSTRREVLKVLG 799
D + + KR+VA+ TLGQ+V STGYV+ PY +YP TRRE ++VLG
Sbjct: 748 DSSLLAKRQVALWTLGQLVASTGYVVEPYRKYPTLLEVLLNFLKTEQNQGTRREAIRVLG 807
Query: 800 IMGALDPHAHKRNQQL---SGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYST 856
++GALDP+ HK N + S V+ + S S Q M + +++Y
Sbjct: 808 LLGALDPYKHKVNIGMIDQSRDASAVSLSESKSSQDSSDYSTSEMLVNMGNLPLDEFYPA 867
Query: 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLK 916
V++ +LMRI RD SL+ +H VV ++ FIFKS+GL CV +LP+V+P + +R CD ++
Sbjct: 868 VSMVALMRIFRDQSLSQHHTMVVQAITFIFKSLGLKCVQFLPQVMPTFLNVIRVCDGAIR 927
Query: 917 DYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976
+++ +LG LVS VR HIR Y+ E+ +L+ + W N + + +L L++Q+ +A
Sbjct: 928 EFLFQQLGMLVSFVRSHIRPYMDEIVTLMRDFW------VMNNSIQSTIIL-LIEQIVVA 980
Query: 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRL 1036
L EF+ +LP ++P ++V + + +L+ +++FG LD+++HLLLP +++L
Sbjct: 981 LGGEFKLYLPQLIPHMLRVFMH-DNSQSRIVSVKLLNAIQLFGANLDDYLHLLLPPIVKL 1039
Query: 1037 FKV-DAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095
F DAPV R+AA+ET+ RL + T + S ++H + LD ++ ELR A+D L L
Sbjct: 1040 FDAPDAPVVARKAALETVDRLTESLDFTDYASRIIHPIVRTLD-QSPELRTTAMDTLSSL 1098
Query: 1096 AHALGEDFTIFIPSIXXXXXXXXXXXXEFEEIEGRL--------RRREPLI-----LGST 1142
LG+ + IFIP + ++ + R+ +PLI L S
Sbjct: 1099 VFQLGKKYQIFIPMVNKVLVRHRINHQRYDVLICRIVKGYTLADEEEDPLIYQHRMLRSN 1158
Query: 1143 AAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIE 1202
+ L+ PVE + P+ + + + QK G A++R +K+DW EW+R LS+E
Sbjct: 1159 QGETLASG-PVE--TGPMKKL----HVSTINLQKAW-G--AARRVSKDDWLEWLRRLSLE 1208
Query: 1203 LLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNI 1262
LLK+S SP+LR+C LAQ + R+LF A FVSCWS+LN Q L++S+E+A +S +I
Sbjct: 1209 LLKDSSSPSLRSCWALAQAYNPMARDLFNAAFVSCWSELNEDQQDELIRSIELALTSQDI 1268
Query: 1263 PPEILATLLNLAEFMEHDEK-PLPI-D---IRLLGALAEKCRAFAKALHYKEMEFEGARS 1317
E+ TLLNLAEFMEH +K PLP+ D I LLG A KCRA+AKALHYKE+EF+ +
Sbjct: 1269 A-EVTQTLLNLAEFMEHSDKGPLPLRDDNGIVLLGERAAKCRAYAKALHYKELEFQKGPT 1327
Query: 1318 NRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-DVQLKESWYEKLQRWDDALKA 1376
P A++E+LI INN+L Q EAA G+L YA K +++++ +WYEKL W+DAL A
Sbjct: 1328 ------P-AILESLISINNKLQQPEAAAGVLEYAMKHFGELEIQATWYEKLHEWEDALVA 1380
Query: 1377 YTNKA-SQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTXXXXXXXXXXXXXXXX 1435
Y K + +P ++L GRMRCL AL W +L+ C E WT
Sbjct: 1381 YDKKMDTNKDDPELML----GRMRCLEALGEWGQLHQQCCEKWTQVNDETQAKMARMAAA 1436
Query: 1436 XXWNMGEWDQMAEYVSRL--DDGDESKLRGLGNTAANGD--GSSNGTFFRAV-LLVRRGK 1490
W +G+WD M EY + D D + R + A + D + +A LL
Sbjct: 1437 AAWGLGQWDSMEEYTCMIPRDTHDGAFYRAV--LALHQDLFSLAQQCIDKARDLLDAELT 1494
Query: 1491 VL--ESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRN 1548
+ ESY RAY MV Q LSELEEVI Y +P RR IIR +W ER+QG +R
Sbjct: 1495 AMAGESYSRAYGAMVSCQMLSELEEVIQYKLVPE-------RREIIRQIWWERLQGCQRI 1547
Query: 1549 VEVWQXXXXXXXXXXPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP--ETSHEN 1606
VE WQ P ED+ TWLK+ASLC KSGR++ A TLV LL DP + H
Sbjct: 1548 VEDWQRILMVRSLVVNPHEDMRTWLKYASLCGKSGRLALAHKTLVLLLGVDPSRQLDHPL 1607
Query: 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQXXXXXXXXXXXXX 1666
H PQV YAY+K+ W + ++ +AF +Q + Q
Sbjct: 1608 PTVH--PQVTYAYMKHMW---KSARKIDAFQHMQHFVQTMQQ--QAQHAIATEDQQHKQE 1660
Query: 1667 NVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726
L+AR +LKLG W+ L G+++ +IP+++ Y AT+ W KAWH+WA+ N +
Sbjct: 1661 LHKLMARCFLKLGEWQLNLQ-GINESTIPKVLQYYSAATEHDRNWYKAWHAWAVMNFEAV 1719
Query: 1727 SHY 1729
HY
Sbjct: 1720 LHY 1722
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0DJS1 | TOR_ORYSJ | 2, ., 7, ., 1, 1, ., 1 | 0.7442 | 0.9701 | 0.7375 | yes | no |
| Q9FR53 | TOR_ARATH | 2, ., 7, ., 1, 1, ., 1 | 0.8150 | 0.9946 | 0.7513 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1874 | |||
| COG5032 | 2105 | COG5032, TEL1, Phosphatidylinositol kinase and pro | 1e-115 | |
| pfam02259 | 350 | pfam02259, FAT, FAT domain | 7e-85 | |
| pfam11865 | 160 | pfam11865, DUF3385, Domain of unknown function (DU | 4e-58 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 0.001 | |
| COG5215 | 858 | COG5215, KAP95, Karyopherin (importin) beta [Intra | 0.004 |
| >gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 406 bits (1044), Expect = e-115
Identities = 365/1669 (21%), Positives = 637/1669 (38%), Gaps = 146/1669 (8%)
Query: 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315
+H S L E E + + V L L+++ + +LP + FL
Sbjct: 35 LLHVSFLDYKEKD----ERLSNVNDLVRNSTQSLLNTISNLIKI-VKFVLPLKSFFLSPI 89
Query: 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375
F + M IL + AL A D L L TI L + + R
Sbjct: 90 FA-KLRALPMTKILCISADTYCLSLSIKAL-----ADDESLTTILKTIRELLSKFLLRLR 143
Query: 376 GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+G +A+ LL + LS L + ++ SL T+
Sbjct: 144 LLFL-----FIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKETL 198
Query: 436 QDRLLDCISFVLSKSHYSQA--RPAATP----IRGNVMNIPQQVSDLNGSAPVQL-ALQT 488
Q+RLL + + +++ R + +++ S PV +
Sbjct: 199 QNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLN 258
Query: 489 LARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548
L + L F R S++ YLD + K + C L
Sbjct: 259 LLLIKVSYY-LPSFFRLSLLSYLDHFETDLFKTFLVTSCFLFF----------VDEICKP 307
Query: 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL 608
+ + E+L + L I D+ +R S SSL FD LA D + +F
Sbjct: 308 ESEHLAEEVSEKLSKFLTIEI-IDSFPEIRISALSSLLVI--FDYHLALPDAVRLLFGES 364
Query: 609 NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGC 668
ND+ F + E A+ GRL PA VLP+L L+ LLT L+ S E SA+LL
Sbjct: 365 NDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLK-ISGLILEFEISAQLLCN 423
Query: 669 LIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFG-MRQYI 727
LIR+ +L+ I+P ++ + I+++N IS + +G+L + G + Y
Sbjct: 424 LIRSSNQLLTSLISPYFLFILPKC-----IDSSNSEISYRVENLGELKDILGLDRITDYQ 478
Query: 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELV 787
+ + LI+ ++ + V KRE Q+ VI P+ +YP+ L L +K++ V
Sbjct: 479 ALSLRLIIVSIQLRSFVFKREAINQIFKQL---ASIVIKPFLDYPKRLDLPIKIVTVVYV 535
Query: 788 WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPS- 846
RR K+ G++G++D ++H + S S P + P+ L
Sbjct: 536 ALLRRPTEKLSGVLGSIDKYSHIE-----------SEEMSSS---DFPWTKNPVGLQLLA 581
Query: 847 ----FATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902
+ +D Y TV+ +L+ IL+ P L+ H ++ ++M I S+G + P
Sbjct: 582 VYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-P 640
Query: 903 DLFHTVRTCD-DYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTY 961
+ + Y L +V IR + + + S ++ L
Sbjct: 641 SFLYIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWIL------- 693
Query: 962 RGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLD--ILHTLEVFG 1019
L ++ + +L AL E + P + + ++ +Y+ V +L L FG
Sbjct: 694 LKLLLIAFISKLISALQGELKMLAPTLFTLFLVLVERY-LDVEYSSVSFKLLLVILVYFG 752
Query: 1020 GTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
G L+ + L+L ++ L + IE L++ ++ + S L+ L L
Sbjct: 753 GNLESLVLLILDLIVMLVEYTELGLQESIFIERLSQFFKFKNLSENASRLLPPLMDNLS- 811
Query: 1080 KNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPL 1137
K+ ELR + D + L L D I FIP I+ L R+ ++ + E L
Sbjct: 812 KSHELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESL 871
Query: 1138 ILGSTAAQQLSRRVPVEVISDPLNDVDSDPYED---GTDAQKQLRGHQA---SQRSTKED 1191
L V + + Q +A K+
Sbjct: 872 P------YNL--NVDRGTDLREF--FQTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDF 921
Query: 1192 WAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQ 1251
W E + +L + LLKE P ALR C+ L+ L +GREL+ + CW +L + ++ L++
Sbjct: 922 WQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIK 981
Query: 1252 SLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYK 1308
SL+ P IP IL LL NL EF EH K LP+ +G C AK LH +
Sbjct: 982 SLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSLSIGFYESLCSFLAKLLHDE 1041
Query: 1309 EMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368
E+ F +E L+ +N ++Q + IL + + QLK + LQ
Sbjct: 1042 ELYFFPLLFVS-------SLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQ 1094
Query: 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLE 1428
RW +AL Y S+ + + ++R + AL + E ++L + + R
Sbjct: 1095 RWYEALNRYFELLSKGDR---LFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKL 1151
Query: 1429 MAPMAANAAWNMGEWDQMAEYVS---------RLDDGDESKLRGLGNTAANGDGSSNGTF 1479
+ + A A +GEW + + + + + D
Sbjct: 1152 LETLVATAYEQVGEWYKAQQLYEVAQRKARSKEFPFSLQYLYWHINDI-DCADK-LQSVL 1209
Query: 1480 FRAVLL--VRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNM 1537
L+ + + ES+ RA + ++ SELEE+ID + A ++ +
Sbjct: 1210 AELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNEDFGALMLLSLSAEL 1269
Query: 1538 WTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVK 1594
W + ++G +++++ + ++V+ P ++ E ++KF LC S S+ ++
Sbjct: 1270 WDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEKNIQ 1329
Query: 1595 LL--QYDPETSHENV-RYHGPPQVMYAYLKYQWSLG---EDLKRKEAFARLQTLAMELSS 1648
L + + S R PP LK + L+ L + + L S
Sbjct: 1330 ELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSLLNLQS 1389
Query: 1649 CPVI-QSAASTSLTTATSTN--VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNAT 1705
+ Q + S +A S N + + +L K+ S ++ Y
Sbjct: 1390 SSLSKQLVSRGSSESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLC 1449
Query: 1706 QCATKWGKAWHS-WALFNTAVMSHYTLRGLPSVAP----QFVVHAVTGYFHSIACAAHAK 1760
+ + KA + W L N + S ++ + F S A
Sbjct: 1450 RLGRRELKAGLNVWNLTNLELFSDIQESEFFEWGKNLKLLSIIPPIEEIFLSN-----AL 1504
Query: 1761 GVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIHSNNRAV 1819
++D+L+ L L+ G+ + A + + +I + V+P I + S +
Sbjct: 1505 SCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLD 1564
Query: 1820 RELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHS 1868
QSLL +IG+ HPQAL++ L A +S + + + A + +K R H
Sbjct: 1565 LNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHD 1613
|
Length = 2105 |
| >gnl|CDD|216950 pfam02259, FAT, FAT domain | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 7e-85
Identities = 130/385 (33%), Positives = 183/385 (47%), Gaps = 75/385 (19%)
Query: 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRG 1489
AP+A AAW +G+WD+M EY+S + + S + +F++A+L + R
Sbjct: 1 APLALEAAWRLGQWDEMDEYLSSMKEA-----------------SPDRSFYQALLALHRN 43
Query: 1490 K----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVA 1527
ESY RAY +VR+QQL+ELEE I Y +
Sbjct: 44 DFDEAERYIDKARQLLDTELSALPGESYNRAYPLLVRLQQLAELEEAIQYKSKLGDGSSE 103
Query: 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP------PTEDVETWLKFASLCRK 1581
+ IR W +R+ G + +VE+WQ +L+ R+LVL P E E WLKFA+L RK
Sbjct: 104 SLKS--IRQTWRKRLPGCQDDVEIWQDILSWRSLVLSLINYRGPHELAEMWLKFANLARK 161
Query: 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQ- 1640
SGR S A L+KLL YD P V+ AY KY W+ G+ ++EA +L+
Sbjct: 162 SGRFSLAEKALLKLLTYDTRED--------LPNVVIAYAKYLWAKGQ---QQEAIQKLRE 210
Query: 1641 ----TLAMELSSCPVIQSAASTSLTTATSTNV-----PLIARVYLKLGSWKRALPPGLDD 1691
L+ + S + + +STN+ L+AR +LKLG W L
Sbjct: 211 FVSCYLSKPVGSSSDSELLLGLTYEVISSTNLEYFEAKLLARCFLKLGEWLDKLQMNWGQ 270
Query: 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYT--LRGLPSVAPQFVVHAVTGY 1749
EI+ AYR A Q +W KAWHSWAL N V+ + ++VV AV GY
Sbjct: 271 GKKDEILQAYRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELRSEYVVPAVEGY 330
Query: 1750 FHSIACAAHAKGVDDSLQDILRLLT 1774
S++ + SLQD+LRLLT
Sbjct: 331 LKSLSL-----SSEKSLQDLLRLLT 350
|
The FAT domain is named after FRAP, ATM and TRRAP. Length = 350 |
| >gnl|CDD|204764 pfam11865, DUF3385, Domain of unknown function (DUF3385) | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 4e-58
Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823
V+ PY +YP+LLG+LL +L E W RRE LK+LGI+GALDP+ HK ++ +
Sbjct: 1 VVEPYLDYPELLGVLLNILKTETSWEVRRETLKLLGILGALDPYKHKEIER--NLSDGQS 58
Query: 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLM 883
+S + L PS S++YY TV INSL++IL+DPSL+S+H VV ++M
Sbjct: 59 A---ESTNKCTDILLLMKGLSPS---SDEYYPTVVINSLLKILKDPSLSSHHTAVVQAIM 112
Query: 884 FIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931
IFKS+GL CVP+LP+V+P +RT L ++ +L TLVSIV+
Sbjct: 113 NIFKSLGLKCVPFLPQVIPPFLSVIRTLPASLLEFYFQQLSTLVSIVK 160
|
This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 160 to 172 amino acids in length. This domain is found associated with pfam00454, pfam02260, pfam02985, pfam02259 and pfam08771. Length = 160 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAIS 621
+E LL A ++D D VR + +L G G + L A+ L D D +VR A
Sbjct: 1 LEALLEALLSDPDPEVRAAAARAL-GELGDPEALP------ALLELLKDPDPEVRRAAAE 53
Query: 622 VAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
G+L + LPAL L Q D R +A L
Sbjct: 54 ALGKLGDPE---ALPALLELL--------QDDDDAVVRAAAASALA 88
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 17/221 (7%)
Query: 845 PSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904
ED + +RIL + V ++ + S+ Y K +P L
Sbjct: 589 RDIEDVED----QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL 644
Query: 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964
+ D ++ + +G L + + Y L S + + SS AT+R +
Sbjct: 645 TRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS---EATHRDLKPA 701
Query: 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLD--------ILHTLE 1016
+L + + LA+ F ++L +I+ Q S+ + +D YV D +
Sbjct: 702 -ILSVFGDIALAIGANFESYLDMIMMLFQQA-SELDPHSDEVYVDDYRKNAVQLVNCAYV 759
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
G + + +LP +I +F + E TR
Sbjct: 760 GIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAA 800
|
Length = 858 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1874 | |||
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 100.0 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 100.0 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 100.0 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.96 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.95 | |
| KOG0892 | 2806 | consensus Protein kinase ATM/Tel1, involved in tel | 99.95 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.94 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.93 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.91 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 99.9 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.86 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.75 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.74 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.7 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.66 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.65 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.64 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.49 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.39 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.14 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.12 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.03 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.02 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.02 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 98.99 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.92 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 98.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.85 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.84 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.74 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 98.73 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.68 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.56 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.5 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.48 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.48 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.47 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.42 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.34 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.31 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.29 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.23 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.22 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.2 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.2 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.16 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.1 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.09 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.99 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.96 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.95 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.94 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.93 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.91 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.91 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.83 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.83 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.82 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.81 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.78 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.78 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.76 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.75 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.71 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.7 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.69 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.65 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 97.64 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.56 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.53 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.52 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 97.47 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 97.38 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.28 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 97.22 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.21 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.15 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.13 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 97.11 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.1 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.1 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.05 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.01 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.96 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.96 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 96.95 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 96.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 96.87 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.8 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.79 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.79 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.78 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.77 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.74 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 96.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 96.72 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.72 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.62 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 96.6 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 96.54 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.54 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.54 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.54 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.5 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.49 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 96.4 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.31 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.27 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 96.22 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.21 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.17 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.13 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.1 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 96.09 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.09 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.02 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 96.02 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.88 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 95.87 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.78 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 95.75 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 95.68 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.68 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 95.67 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 95.63 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.57 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 95.48 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.47 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 95.45 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.33 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.26 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 95.22 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 95.19 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 95.1 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.04 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.01 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.96 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.96 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 94.83 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 94.79 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.71 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.7 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 94.69 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.35 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.32 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 94.07 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.02 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 93.94 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 93.8 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 93.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 93.76 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 93.73 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 93.65 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 93.43 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 93.38 | |
| PF08713 | 213 | DNA_alkylation: DNA alkylation repair enzyme; Inte | 93.16 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 93.1 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.97 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 92.95 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 92.82 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 92.76 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 92.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 92.68 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 92.53 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 92.52 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 92.33 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 92.24 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.19 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.16 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 92.13 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 92.02 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 91.95 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 91.71 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 91.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 91.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 91.52 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.34 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 91.32 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 90.91 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.9 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 90.74 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 90.72 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 90.71 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 90.56 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 90.46 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 90.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 90.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 90.09 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 90.06 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 90.04 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 89.76 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 89.76 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 89.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 89.74 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 89.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 89.53 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 89.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 89.28 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 89.19 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 89.06 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 89.01 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 88.57 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 88.57 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 88.54 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 88.48 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 88.43 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 88.06 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 87.8 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 87.7 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 87.62 | |
| PF11919 | 90 | DUF3437: Domain of unknown function (DUF3437); Int | 87.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 87.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 86.93 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 86.43 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 86.35 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 86.33 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 86.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 86.12 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 85.84 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 85.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 85.51 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 85.46 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 85.44 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 85.33 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 85.17 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 85.12 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.91 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 84.85 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 84.72 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 84.41 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 84.22 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 84.04 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 84.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 83.99 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 83.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 83.8 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 83.53 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 83.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 83.2 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.95 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 82.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 82.62 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 82.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 82.39 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 81.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 81.49 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 81.38 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 80.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 80.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 80.9 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 80.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 80.87 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 80.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 80.14 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 80.11 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 80.1 |
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-152 Score=1529.83 Aligned_cols=1754 Identities=41% Similarity=0.693 Sum_probs=1527.8
Q ss_pred HHHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000196 24 DALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
..+..++..|++++.. +.+|++|+..+|....++++.+.+.+|.+.+++.++++.++.+.+.+.||+.+...++.+...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t 84 (2341)
T KOG0891|consen 5 SVLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGT 84 (2341)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhc
Confidence 3788999999998754 445999999999999999999999999999999999999999999999999999999888622
Q ss_pred c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000196 103 E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 103 ~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la 181 (1874)
. ......++.+||+.+++ +.|..++..|++++|.++..++...+++++++++.+++|+ ++..+.+|++|+..++.++
T Consensus 85 ~~~~~~~s~~~n~l~~l~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~ 162 (2341)
T KOG0891|consen 85 EHDRKNISRLANYLRYLLP-SNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELA 162 (2341)
T ss_pred ccccchhHhHHHHHHHhhc-cCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHh
Confidence 2 34557899999999998 5699999999999999999999999999999999999999 6777889999999999999
Q ss_pred hhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000196 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1874)
Q Consensus 182 ~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al 261 (1874)
.++|..++|+++.++..+|.+++|+++.+|..|+.|++.++..+.+|+.....+||+.+++.+..++..+. .-.|+++
T Consensus 163 ~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~--~~~~~~~ 240 (2341)
T KOG0891|consen 163 DNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDG--VKIHASL 240 (2341)
T ss_pred hcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchH--HHhhhHH
Confidence 99999999999999999999999999999999999999999999988877788999999999999987653 2289999
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH
Q 000196 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG 341 (1874)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a 341 (1874)
++++++++....++ .++..++.........++..++..+...+|.+|.+.+..|...|++..|.+++..+.+.+ ..+
T Consensus 241 ~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~ 317 (2341)
T KOG0891|consen 241 LVYNELLRISDPFL-EKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK--TRA 317 (2341)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc--hhH
Confidence 99999999776555 777788888888888999999999999999999999999988999999999999988433 899
Q ss_pred HHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC---CCCchhHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHH
Q 000196 342 FIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTL 417 (1874)
Q Consensus 342 ~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~---~~~~~a~~~l~~l~~~~g~~~~p~l-~~ll~~ll~~~ls~~l 417 (1874)
+..||.+|.+++..+.+|...+...+.+.+..... +-....|.|++.++.++|+.+..++ ..+|+.++.+++++.+
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~~~l 397 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLSDSL 397 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCchHHH
Confidence 99999999999999999998888888887744311 1134789999999999999766666 7899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-cCCCccccccCCchhHHHHHHhhcccccCC
Q 000196 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-MNIPQQVSDLNGSAPVQLALQTLARFNFKG 496 (1874)
Q Consensus 418 ~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~ 496 (1874)
.+++..++..+|++.+.+++++++.++.++.|..+.+............ .....+.++ +...+.+|+++++.|.|.+
T Consensus 398 ~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~--~~~~~~~a~~~l~~~~~~~ 475 (2341)
T KOG0891|consen 398 LERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGD--STDDIQLAFKTLGGFKFSG 475 (2341)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhccc--ccHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999998876533211110000 001112222 2223788999999999999
Q ss_pred CcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChh
Q 000196 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVT 576 (1874)
Q Consensus 497 ~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~ 576 (1874)
+....|++.++..|++++++++|+.|+.+|+.++..+.. +.+++....+++..++.+++..+++|+++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-----------~~~~~~~~~~~v~~vl~~ll~~aia~~~~~ 544 (2341)
T KOG0891|consen 476 YSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-----------CSQTSPHALQVVKEVLSALLTVAIADTDPD 544 (2341)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-----------hhcccchHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999986652 224555566789999999999999999999
Q ss_pred HHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCCh
Q 000196 577 VRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 577 vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
+|.+++.+++ .+|+++++|+++++.++.+++|+...++.++..++|+++..||++++|.+|+.++..++.++.+ +..
T Consensus 545 i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s-g~~ 621 (2341)
T KOG0891|consen 545 IRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS-GMA 621 (2341)
T ss_pred hhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc-chH
Confidence 9999999996 7999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred HhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH
Q 000196 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~ 736 (1874)
+..++++..++.++...+..+.||+.+++..+++.+.+. .+.+..++..++++|+.++|+.+..+++.+++.+.+
T Consensus 622 r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~-----~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~ 696 (2341)
T KOG0891|consen 622 RTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDP-----SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIK 696 (2341)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHH
Confidence 889999999999999999999999999999999999986 668888999999999999999999999999999999
Q ss_pred HHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccC
Q 000196 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 737 ~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~ 816 (1874)
.+.|.++..+|.++.+++|++++..|+++.||.++|.+++.+.+.++++....+|+++++.+|.+|++|||+++......
T Consensus 697 ~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~ 776 (2341)
T KOG0891|consen 697 MLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTS 776 (2341)
T ss_pred HHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhh
Confidence 99998889999999999999999999999999999999999999999998999999999999999999999987654311
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~ 896 (1874)
. . ............+....... .+..++||+.+.+..|+.+++|++++.+|..++++++.|+.++|.+|..|
T Consensus 777 ~-~----~~~~~~~k~~~~~~~~~~~~---~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~ 848 (2341)
T KOG0891|consen 777 A-S----KISSEQIKSDIDISLLESGV---NPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLF 848 (2341)
T ss_pred h-H----hhhhccccccchHHHHHhhh---hhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhh
Confidence 0 0 00000000000111111111 23448899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000196 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1874)
Q Consensus 897 l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1874)
+++++|.++.+.+.+.++.+++++.+++.++..+++|+++|++.++..+..+|.... .+..+++.+++.+..+
T Consensus 849 l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-------~l~~~~~~l~~~i~~~ 921 (2341)
T KOG0891|consen 849 LDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-------SLQITIISLIEDIAVA 921 (2341)
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999999999999999997321 2345778899999999
Q ss_pred hhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHh
Q 000196 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTR 1055 (1874)
Q Consensus 977 l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~-~~~~vr~~ai~~l~~ 1055 (1874)
++.+|+.|++..++.++..+ ..+++.++....++++++..+|...+.|.|.+.|.++++++.. .+..+|..++.+++.
T Consensus 922 l~~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~ 1000 (2341)
T KOG0891|consen 922 LGGEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGR 1000 (2341)
T ss_pred HHhHHHHhhhhhccchheee-cccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHH
Confidence 99999999999999999999 5577778888889999999999999999999999999999875 677899999999999
Q ss_pred hcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHHhcCC
Q 000196 1056 LIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135 (1874)
Q Consensus 1056 l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~~~~~ 1135 (1874)
+..++++..|.++|++++.|.+... ++++..+++.+|.+..++|.+|.+|+|++.+.+...++.|..|+..+.++..+.
T Consensus 1001 l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (2341)
T KOG0891|consen 1001 LAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVNKKLVEHRIQHSTYDELVSKLLQNE 1079 (2341)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999987 999999999999999999999999999999999999999999999999999988
Q ss_pred CcccCchhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh-hcccccccCCCChhhHHHHHHHHHHHHHhcCCCHHHHH
Q 000196 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK-QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRT 1214 (1874)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~ir~ 1214 (1874)
+++.+......+. .|.... .+...+.. +...... ..+.|...++.+++||.+|.++.++.+++++||+++|+
T Consensus 1080 ~l~~~~~~~~~~~--~~~~~~----~~~~~~~~-~l~~~~~~l~~~w~~~~~~s~d~~~e~~~~~~i~~lk~~~s~~lr~ 1152 (2341)
T KOG0891|consen 1080 PLPDDVLSAGESD--RPSRQM----NSDPADVT-KLPVNQNALKKAWESSQRVSKDDWQEWIRRLSIELLKESPSHALRA 1152 (2341)
T ss_pred ccCcccccccccc--Cccccc----cccccccc-hhhhhHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhcchhhHHH
Confidence 7765432211100 000000 00000000 1111111 12334467889999999999999999999999999999
Q ss_pred HHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 000196 1215 CARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGAL 1294 (1874)
Q Consensus 1215 c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~~~ll~l~e~m~~~~~~l~i~~~~l~~~ 1294 (1874)
|..++..+.++++++||++|.|||.++++..|..+.+.++.+++++++| +++|+++|++|||||.++|+||+..+|+..
T Consensus 1153 ~~~l~~~~~~l~r~~f~~~~~s~w~e~~~~~q~~l~~~le~~~~~~~i~-e~~q~l~nl~ef~eh~~~plpi~~~~L~~~ 1231 (2341)
T KOG0891|consen 1153 CSSLAQAYYPLARDLFNAAFVSCWTELDSSYQNDLIKSLEIALSSPDIP-EIIQTLLNLAEFMEHDDKPLPIPIKTLGLY 1231 (2341)
T ss_pred HHhhhhhccccchhhhhHHHHHHhhhcccchhhhhhhhHHHHHhCCccH-HHHHhhhhHHHHHHhcccCCCcchhhHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHH
Q 000196 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDAL 1374 (1874)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al 1374 (1874)
+.+|++|++||+|+|.+|... ...++++.++.+++.++++|.+.|+.++++++...+++++|||++.+|++|+
T Consensus 1232 ~~~c~a~~~~l~y~el~~~~~-------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l~~~~d~l 1304 (2341)
T KOG0891|consen 1232 AEKCRAYAKALHYKELEFLKE-------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKLHRWEDAL 1304 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccccccchhHh
Confidence 999999999999999999754 2358899999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcC
Q 000196 1375 KAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLD 1454 (1874)
Q Consensus 1375 ~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~ 1454 (1874)
.+|+........ ..+...|.|+|+.++|+|+.+.......|.....+.+..++|.++.++|.+++|+.+.+|++.++
T Consensus 1305 ~a~~~~~~~~~~---~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~~~~w~~~~~~~s~~~ 1381 (2341)
T KOG0891|consen 1305 AAYELREKAGDS---SFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWGLGQWDTMAEYVSVMS 1381 (2341)
T ss_pred hhhhcccchhhh---hHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhccccchhhhhhccccc
Confidence 999987543222 25678999999999999999998888999888888899999999999999999999999999877
Q ss_pred CCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHH
Q 000196 1455 DGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELE 1512 (1874)
Q Consensus 1455 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~Ele 1512 (1874)
.. +.+..|+++++++|+.. ..|||+|+|..++..|++.|+|
T Consensus 1382 ~~-----------------~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~~~~~~~e~E 1444 (2341)
T KOG0891|consen 1382 ED-----------------SQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMVRAQMLAELE 1444 (2341)
T ss_pred cc-----------------chhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhhhhhhhhhHH
Confidence 53 56788999999888743 4699999999999999999999
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000196 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1874)
Q Consensus 1513 Eii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L 1592 (1874)
|+++|++.+ +++..+.+.|.+|+.+|+...++|++++.+|.++++|+++..+|+||+.+|||+|+..++.+.+
T Consensus 1445 ~~~~~k~~~-------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~~~~~~~ik~a~~cr~s~~~~l~~~~l 1517 (2341)
T KOG0891|consen 1445 EIIEYKKLP-------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQEDMEMWIKFASLCRKSGRLALARKLL 1517 (2341)
T ss_pred HHHHhhccc-------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCCcchHHHHHHHHHhHHhHHHHHHHHHH
Confidence 999999765 4677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc-ccc-ccccCcchhh
Q 000196 1593 VKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS-TSL-TTATSTNVPL 1670 (1874)
Q Consensus 1593 ~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l 1670 (1874)
..+++-.+............|.+++++.|++|..+. ..+|++.+..+...+..+....++.. ... .........+
T Consensus 1518 ~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~---~~~~~~~~~~~~s~l~~d~~~~~~~~~~~~~~~~~~~~~~l 1594 (2341)
T KOG0891|consen 1518 NELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDS---KDEAINTLQEFTSTLNSDLGSDPDELLSEPTEAEKQEYTKL 1594 (2341)
T ss_pred HHHHhcCccccccccccccChHHHHHHHhHHHhhcc---chHHHHHhHHHHHHHHhhcCCCchhhhhcccchhhhHHHHH
Confidence 998876654432222244579999999999999985 67899999987766554322111000 000 1112445788
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc---c---------------
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL---R--------------- 1732 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~---~--------------- 1732 (1874)
.|+|++++|+|......+++...++.++++|..|+.+++.|||+||.||..||+.+..... .
T Consensus 1595 ~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~l~~~~~~~~~~~~~~~~~~~~~ 1674 (2341)
T KOG0891|consen 1595 LARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQMLKQVTKAKYAPGANIWNMPDYL 1674 (2341)
T ss_pred HHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccccchhhc
Confidence 9999999999999988888888899999999999999999999999999999998875211 1
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHH
Q 000196 1733 ---GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809 (1874)
Q Consensus 1733 ---~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLi 1809 (1874)
.+......|+++|++|||+++.++ .++.+||++|+++|||+||+..+|..++..++..++++.|+.++|||+
T Consensus 1675 ~~~~~~~~~~~~~v~avk~ff~~~~~~-----~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ipqLi 1749 (2341)
T KOG0891|consen 1675 GSNSDLMLIHHYAVPAVKGFFRSISLS-----PGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEVIPQLI 1749 (2341)
T ss_pred cCcCCccchHHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHhHHHHH
Confidence 111234569999999999999986 345599999999999999999999999999999999999999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCccc
Q 000196 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1810 ari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
|||+.|...+++.+++++..+|+.||||++|+++++++|.+..|+++|..|+++|++|+|.|+
T Consensus 1750 ari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv 1812 (2341)
T KOG0891|consen 1750 ARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLV 1812 (2341)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-56 Score=579.39 Aligned_cols=636 Identities=17% Similarity=0.272 Sum_probs=495.7
Q ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCC------
Q 000196 1192 WAEWMRHLSIELLKESP----SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPN------ 1261 (1874)
Q Consensus 1192 w~~W~~~~~~~ll~~sp----s~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~------ 1261 (1874)
+.+|+.+++..+|...+ ++.+.+|+.....+..+...|.|++.+-|....+++.|..+.+.+..+|....
T Consensus 1237 ~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns 1316 (2382)
T KOG0890|consen 1237 YREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINS 1316 (2382)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccc
Confidence 88999999999988843 46777777777777789999999999999999999889999988888887632
Q ss_pred ----CChHHHHHHHHHHHHhhhCC----------C----------------------------CC-CCCHHHHHHHHHhc
Q 000196 1262 ----IPPEILATLLNLAEFMEHDE----------K----------------------------PL-PIDIRLLGALAEKC 1298 (1874)
Q Consensus 1262 ----~p~~i~~~ll~l~e~m~~~~----------~----------------------------~l-~i~~~~l~~~a~~c 1298 (1874)
..+-..|+++.+.||+.+.- + .| -||..+|+.++.+|
T Consensus 1317 ~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~~~~~~~Tt~~~~~~~v~~fL~~iP~~tLa~aSfrc 1396 (2382)
T KOG0890|consen 1317 RGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFWKSIMSWTTTGEDIEGVQSFLDLIPSDTLARASFRC 1396 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhheeeeccccCCCchhhhHHHHhhccHHHHHHHHHhh
Confidence 11346788888888876541 0 02 47788999999999
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYT 1378 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~ 1378 (1874)
++|++|++|+|.++.+.... .......-.|..+|..|+|||++.|+.........+..+-.-+|..|+|.+|..||+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~---~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEK---ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHH
Confidence 99999999999984322110 111223445666999999999999999843333333333345999999999999999
Q ss_pred HHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCc
Q 000196 1379 NKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDE 1458 (1874)
Q Consensus 1379 ~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~ 1458 (1874)
+..+.+++. ...+.|.++|..++|+++.+....++.|.+ ..++..++..+..+|+|++++||.+++|.. +.+..
T Consensus 1474 ~~~q~~p~~---~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~~n~e 1547 (2382)
T KOG0890|consen 1474 RLIQKDPDK---EKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--DRNIE 1547 (2382)
T ss_pred HhhcCCCcc---ccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--ccccc
Confidence 998765442 235789999999999999999999988865 456677888899999999999999999988 33222
Q ss_pred chhhc-cccccccCCCCCchHHHHHHHHHHhcC--------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhh
Q 000196 1459 SKLRG-LGNTAANGDGSSNGTFFRAVLLVRRGK--------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEG 1529 (1874)
Q Consensus 1459 ~~~~~-~~~~~~~~~~~~~~~f~~a~~~i~~~~--------~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~ 1529 (1874)
+.-.. +|..+........-.|+..+-..+... ..+||.|+|+.++++|++.|+++.++.......+.
T Consensus 1548 ~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~---- 1623 (2382)
T KOG0890|consen 1548 YWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDE---- 1623 (2382)
T ss_pred chhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccc----
Confidence 22122 455544444444445555543333211 23499999999999999999999998664322111
Q ss_pred HHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000196 1530 RRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT-------EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1874)
Q Consensus 1530 ~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-------e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1874)
.-..-...|..|+..+++++...++||+.|+.++... +.+++|+++|++|||+|+++.|.++|.++...
T Consensus 1624 ~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---- 1699 (2382)
T KOG0890|consen 1624 DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---- 1699 (2382)
T ss_pred cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----
Confidence 1111237899999999999999999999999998632 34899999999999999999999999988764
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccccc-ccCcchhhHHHHHHHHhhh
Q 000196 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTT-ATSTNVPLIARVYLKLGSW 1681 (1874)
Q Consensus 1603 ~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~a~~~~~~g~w 1681 (1874)
..|.+.+|+||++|.+|+ ...|+..|++.+...-.+. +. +..+ ....+-....++.+++|+|
T Consensus 1700 --------r~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~~--~~----~~~~~p~~~n~~i~~~~~L~~~~~ 1762 (2382)
T KOG0890|consen 1700 --------RLPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPDL--HT----PYTDTPQSVNLLIFKKAKLKITKY 1762 (2382)
T ss_pred --------ccchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhcccc--cC----CccccchhhhhhhhhhHHHHHHHH
Confidence 258999999999999997 5789999999885432210 00 0000 0112234566899999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCC--CchhhHHHHHHHHHHHHHhhcccc
Q 000196 1682 KRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLP--SVAPQFVVHAVTGYFHSIACAAHA 1759 (1874)
Q Consensus 1682 ~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~--~~~~~~~~~ai~~f~~si~~~~~~ 1759 (1874)
+.++. .-..++++++|+.|+...|+|++.+++.|.|+++++..+.....+ .....|++ ++..|++|+.+|
T Consensus 1763 ~~es~----n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~~~~~~sl~yg--- 1834 (2382)
T KOG0890|consen 1763 LEESG----NFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AIYFFGRALYYG--- 1834 (2382)
T ss_pred HHHhc----chhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HHHHHHHHHHhc---
Confidence 99874 245799999999999999999999999999999998876432211 13345777 999999999875
Q ss_pred CCCcchHHhHHHHHHHHHhcCCcH-----------------HHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHH
Q 000196 1760 KGVDDSLQDILRLLTLWFNHGATE-----------------EVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVREL 1822 (1874)
Q Consensus 1760 ~~~~~~~q~~~RlLtLwf~~g~~~-----------------~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~ 1822 (1874)
+.+.+|.||||+|||+++|... .++..+.+++..+|+|.|+++.+||+|||+||+.+|.++
T Consensus 1835 --~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~v 1912 (2382)
T KOG0890|consen 1835 --NQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARV 1912 (2382)
T ss_pred --chhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHH
Confidence 6889999999999999985432 245567788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCcc
Q 000196 1823 IQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTT 1871 (1874)
Q Consensus 1823 l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l 1871 (1874)
|.+||.++..+|||+++|.+++.+||..+.|+++|++|+++-+.+++..
T Consensus 1913 l~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~ 1961 (2382)
T KOG0890|consen 1913 LKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDY 1961 (2382)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccH
Confidence 9999999999999999999999999999999999999999999888764
|
|
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=594.99 Aligned_cols=1507 Identities=22% Similarity=0.252 Sum_probs=1090.8
Q ss_pred hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh
Q 000196 275 MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~ 354 (1874)
+.+.++.++........+....++ .+.-+++..+.+.+.-|.. |.+..|+.++....+...+..... +++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~s~~f~~-~~~~~~~~i~~~~~~~~~~~~~~~-------~~~- 119 (2105)
T COG5032 50 LSNVNDLVRNSTQSLLNTISNLIK-IVKFVLPLKSFFLSPIFAK-LRALPMTKILCISADTYCLSLSIK-------ALA- 119 (2105)
T ss_pred hcchHHHHHhhhhhhhhhhhhhhh-HHHHHHHHHHhhccHHHHH-HhccchhHHhhhhhhhhhhcccch-------hhh-
Confidence 445566666666666667677777 7888899999999999998 988888886655543322222222 222
Q ss_pred hhhhhhHHHHHHHHHhhcCCC-CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000196 355 ELFHYLPTITSHLREAIAPRR-GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~-~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1874)
+.++++.+...+++.+ .+- -+.+ ..|.|+|..+..+++.+..++..++.....+.+++........+.+.++.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~-~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~e~~~~~~~ 196 (2105)
T COG5032 120 -DDESLTTILKTIRELL-SKFLLRLR-LLFLFIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKE 196 (2105)
T ss_pred -ccHHHhHHHHHHHHHh-HHHHHHHH-HHHHHHHHHhhhhhHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHhhcccchH
Confidence 5678888888888888 432 1222 67899999999988877777765555555666777788788888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-------cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-------MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~ 506 (1874)
++++++.+.+...+.|..|.............. .....-.....+.+.....+..+..+.+. ..+..+++..
T Consensus 197 ~~~~~l~~~l~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~~~~ 275 (2105)
T COG5032 197 TLQNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLNLLLIKVS-YYLPSFFRLS 275 (2105)
T ss_pred HHHHHHHHHHHhhcCccceeccccccchhhHHHhhhhhhccchhhhhhhhcCChhHHHHHHHHhhhHhe-eeccchhhhh
Confidence 999999999998888876654322211000000 00000000011112223333333333222 2345677888
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
...|.++.+..+++.+...|+.++..... +.+...+..+.+...+.+++...+.++.+++|..++..+.
T Consensus 276 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~i-----------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (2105)
T COG5032 276 LLSYLDHFETDLFKTFLVTSCFLFFVDEI-----------CKPESEHLAEEVSEKLSKFLTIEIIDSFPEIRISALSSLL 344 (2105)
T ss_pred hhHhhcCcchhHHHHHHhhheeeeeeccc-----------cCcccccchHHHHHHHHHHHhhhcccccHHHHHHHHhccc
Confidence 88999998999999999888777654331 1122233455567777788888888999999999666663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1874)
..|+.+++.++.+...+....|.....+..+....+++...+|+.++|.+++.+....+.+..+ +.....+.+...+
T Consensus 345 --~~fd~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~ 421 (2105)
T COG5032 345 --VIFDYHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLKIS-GLILEFEISAQLL 421 (2105)
T ss_pred --cccCccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHHHHhhhhhhhc-chHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999999999999999999999999988887 7777788888888
Q ss_pred HHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-cchhhcHHhHHHHHHHHHhcCcchh
Q 000196 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 667 ~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
..++........++..+.+..+++...|. ........+..+|++...+| ..+.+|....++.+...+++..+..
T Consensus 422 ~~~i~~~~~l~~~~~~~~~~~~l~~~~d~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 496 (2105)
T COG5032 422 CNLIRSSNQLLTSLISPYFLFILPKCIDS-----SNSEISYRVENLGELKDILGLDRITDYQALSLRLIIVSIQLRSFVF 496 (2105)
T ss_pred HHHHhhhHHhhhhhcchhHHhhhhHhhcc-----ccHHHHHHHHHHHHHHHHhhhhhccHHHHHhhhHhHHHHHHhhccc
Confidence 89999888888888888888888888875 35566677888999999888 5778888888888888888887778
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccccc
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1874)
+|+++..++++++. .++.++.++|+.+.....+.+......+|..+.++.|.+|++||+.+..........
T Consensus 497 ~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~p~~I~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~s~~~------ 567 (2105)
T COG5032 497 KREAINQIFKQLAS---IVIKPFLDYPKRLDLPIKIVTVVYVALLRRPTEKLSGVLGSIDKYSHIESEEMSSSD------ 567 (2105)
T ss_pred hhhHHHHHHHHHHH---hhhhhhhhhHHHhCcceeEEEeecchhhhHHHHHHHHHHHHhhHHHHHHHhcccccC------
Confidence 99999999999987 667888888887777777776666666799999999999999998776443311100
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 000196 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1874)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll 905 (1874)
.........+ ...-+....++.+++|.++....|+.+|+++..+.+|.+++++++.++..++..+.++.+.. |.++
T Consensus 568 -~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 643 (2105)
T COG5032 568 -FPWTKNPVGL--QLLAVYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-PSFL 643 (2105)
T ss_pred -ChhHhcchhh--HHHHHhccccccchhhhhhhhHHHHHHhhhHHhhcccCchHHHHHHHHHHHHhhhccccccC-chHH
Confidence 0000000011 00001111366778888888889999999998877776679999999999999999999988 9999
Q ss_pred HHHhcCCcchhHHHHHH-HHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhcc
Q 000196 906 HTVRTCDDYLKDYITWK-LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTH 984 (1874)
Q Consensus 906 ~~l~~~~~~~~~~~~~~-l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~y 984 (1874)
....+......+..+++ +..++..+.++++.++..+......+|.... ..+..+++.++.+...+..+++.+
T Consensus 644 ~i~~n~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~e~~~~ 716 (2105)
T COG5032 644 YIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWI-------LLKLLLIAFISKLISALQGELKML 716 (2105)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHhhccchHHHHHhHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHHhccchhhh
Confidence 99988877666666666 7888889999999998888877776665311 012234467777777777788888
Q ss_pred chhhHHHHHHhcccc-cccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH-HHhhcccccc
Q 000196 985 LPVILPCCIQVLSDA-ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET-LTRLIPRVQV 1062 (1874)
Q Consensus 985 l~~llp~ll~~l~~~-~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~-l~~l~~~~~~ 1062 (1874)
.+.++...+.....- +..-+......++..+..++..+..|++.++|.+.++.+.... .....+.-+ ++.++...++
T Consensus 717 ~~~~~~~~~~l~~~~~~~~~s~~~~~~i~~~~~~~~~~l~~~~~~~l~~i~~~~e~~~~-~l~~~~~i~~~~~f~~~~n~ 795 (2105)
T COG5032 717 APTLFTLFLVLVERYLDVEYSSVSFKLLLVILVYFGGNLESLVLLILDLIVMLVEYTEL-GLQESIFIERLSQFFKFKNL 795 (2105)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHhhhhcc-ccHHHhHHHHHHHHHHhhhh
Confidence 888888777666410 1111111123455666678888899999999988888865422 233333333 6677777888
Q ss_pred cchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccccc-chhhHHHHH-HhCCCCchhHHHHHHHHhcCCCcccC
Q 000196 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPLILG 1140 (1874)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~-~ip~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1140 (1874)
..+++++++++.+.+... ..++....+..+.+..+.+.++.. |+|.+...+ ...++.|+.+..++++-.++++++..
T Consensus 796 ~~~~~~l~~~l~~~l~~~-~~l~~~~~~~~~~l~~~~~~~~~~~fi~~~~~~l~~~~~~~~~~l~~l~~~~~k~~~~~~~ 874 (2105)
T COG5032 796 SENASRLLPPLMDNLSKS-HELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESLPYN 874 (2105)
T ss_pred HHHHHHHHHHHHHHHhhh-HHHHhhhHhhHHHHHHHHhhhhhhhhhhhHHHhhHHHHHHHHHHHHHHhhcccccccchhh
Confidence 889999999999999877 889999999999999999999998 999888877 56667888888888888877766542
Q ss_pred chhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh--------hcccccccCCCChhhHHHHHHHHHHHHHhcCCCHHH
Q 000196 1141 STAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK--------QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPAL 1212 (1874)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~i 1212 (1874)
..-. ..... .+. ....+...+... ....|..++..++++|++|..++.+++.++.|..++
T Consensus 875 l~~~------~~~~~--~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l 942 (2105)
T COG5032 875 LNVD------RGTDL--REF----FQTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMAL 942 (2105)
T ss_pred ccee------eceec--ccc----ccChHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHh
Confidence 1100 00000 000 000000000001 001122456789999999999999999999999999
Q ss_pred HHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHH---HHHHHhhhCCCCCCCCHH
Q 000196 1213 RTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIR 1289 (1874)
Q Consensus 1213 r~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~~~ll---~l~e~m~~~~~~l~i~~~ 1289 (1874)
+.|+.++..+.++++++|+..+..||.++...+++.+...+..++..+..|+.+.+..+ |+.||++|..++++++..
T Consensus 943 ~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~ 1022 (2105)
T COG5032 943 RDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIKSLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSL 1022 (2105)
T ss_pred hhcchhHHHHhhccHHHHhHHhHHHHHHHhhhhhHHHHHhHHHHhhcCCCCchhhhhhhhhcchhhhhhhhhheecchhh
Confidence 99999999999999999999999999999988999999999999999999999999999 999999999999999888
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcC
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQR 1369 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~ 1369 (1874)
..+.....|+.+++++|+.|.++-.. .....++.+++++..+++.|...|+..........++++.|++.+++
T Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1095 (2105)
T COG5032 1023 SIGFYESLCSFLAKLLHDEELYFFPL-------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQR 1095 (2105)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHhccc-------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHHHH
Confidence 88889999999999999999998532 12478899999999999999999977665555556667899999999
Q ss_pred HHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHH
Q 000196 1370 WDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEY 1449 (1874)
Q Consensus 1370 W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~ 1449 (1874)
|.+++..|....... . ...+...+.+++....+.|+....+++..|-......|.-..+.++.++|..|.|.....+
T Consensus 1096 ~~~~l~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~ 1172 (2105)
T COG5032 1096 WYEALNRYFELLSKG-D--RLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQL 1172 (2105)
T ss_pred HHHHHHHHHHHHhhc-c--chhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHH
Confidence 999999998877543 2 2245678999999999999998888876553333334456778999999999999999999
Q ss_pred HhhcCCCCc-chhhccccccccCCCCCchHHHHHHHHHHh-c---------ChhhhHHHHHHHHHHhHhhhhHHHHHH--
Q 000196 1450 VSRLDDGDE-SKLRGLGNTAANGDGSSNGTFFRAVLLVRR-G---------KVLESYERAYSNMVRVQQLSELEEVID-- 1516 (1874)
Q Consensus 1450 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~-~---------~~~esy~ray~~l~~lq~L~EleEii~-- 1516 (1874)
.+.+..... ...... ...... ...+...-..+..+.. . ...++|.+++....+.+...|++|++.
T Consensus 1173 ~e~~~~k~~~~~~~~s-~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~ 1250 (2105)
T COG5032 1173 YEVAQRKARSKEFPFS-LQYLYW-HINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGM 1250 (2105)
T ss_pred HHHHhhhcccccCchh-hHHHHH-cccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhh
Confidence 887754210 000000 000000 0000111111111111 0 146789999999999999999999998
Q ss_pred hhcCCCCCCchhhH--HHHHHHHHHHHhhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcC-ChhHHHH
Q 000196 1517 YCTLPVGNPVAEGR--RAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG-RISQARS 1590 (1874)
Q Consensus 1517 ~~~~~~~~~~~~~~--~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g-~~~~a~~ 1590 (1874)
+++.... ... ...+.+.|..++.+ +...+..|..+...+..+..+.+....|+++++.|++.+ +..+...
T Consensus 1251 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1326 (2105)
T COG5032 1251 YKSNEDF----GALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEK 1326 (2105)
T ss_pred hhcccch----HHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHhhhhhHHHHHHHHHhhhhHHHHhcch
Confidence 5443211 122 34566799999999 999999999999999999988776789999999999999 7777777
Q ss_pred HHHHHhcCCC-CCCcccc-cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc----ccccccc--
Q 000196 1591 TLVKLLQYDP-ETSHENV-RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA----ASTSLTT-- 1662 (1874)
Q Consensus 1591 ~L~~l~~~~~-~~~~~~~-~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~----~~~~~~~-- 1662 (1874)
.+..+.+-.. ...+.+. ....+|.+.+...+..|+... +..+......+...+....+.++. ...+...
T Consensus 1327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (2105)
T COG5032 1327 NIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWR---QNAFLRINPELLPLLSSLLNLQSSSLSKQLVSRGSSE 1403 (2105)
T ss_pred hHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHH---Hhhhhhhchhhccccchhhhccchhccccccccchhh
Confidence 7777664321 1111111 122346778888888887763 222333333322211111010100 0000000
Q ss_pred ---ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhhccCC----
Q 000196 1663 ---ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS-WALFNTAVMSHYTLRGL---- 1734 (1874)
Q Consensus 1663 ---~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~-wA~~n~~~~~~~~~~~~---- 1734 (1874)
..........++....+.|......+....+.......|..+..+...|+++|+. |+..|++.+.+......
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1483 (2105)
T COG5032 1404 SAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQESEFFEWG 1483 (2105)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 0001123344555555788776655545566777888999999999999999999 99999887765422110
Q ss_pred CCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHHHHHHHHHhcc
Q 000196 1735 PSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIH 1813 (1874)
Q Consensus 1735 ~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~~ipQLiari~ 1813 (1874)
......+..++++..+.++... +.-..++.+|...+|+..|....+.++...+........ |+.++||+..+++
T Consensus 1484 ~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1558 (2105)
T COG5032 1484 KNLKLLSIIPPIEEIFLSNALS-----CYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLS 1558 (2105)
T ss_pred hhhHHhccCCchhHHHHhhhcc-----chHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhh
Confidence 1112345667888888888775 456799999999999999998777777777777777665 9999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCccc
Q 000196 1814 SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1814 ~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
.........++.++.++|+.|||++.|++.++.+|....+...+..+.++.+.|.|.++
T Consensus 1559 ~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v 1617 (2105)
T COG5032 1559 SLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLV 1617 (2105)
T ss_pred hcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhH
Confidence 98888889999999999999999999999999999999999999999999999998765
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=429.89 Aligned_cols=562 Identities=20% Similarity=0.296 Sum_probs=430.3
Q ss_pred CHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCC------CCChHHHHHHHHHHHHhhhCCC
Q 000196 1209 SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSP------NIPPEILATLLNLAEFMEHDEK 1282 (1874)
Q Consensus 1209 s~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~------~~p~~i~~~ll~l~e~m~~~~~ 1282 (1874)
+..+-+...++..+...|..+|..-|...|+.++++++..+++.+...+++. +.-|.++.++ +|-+..+..
T Consensus 2336 ~~~l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~---v~s~~~~~~ 2412 (3550)
T KOG0889|consen 2336 ADFLDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNAL---VESLVKIVP 2412 (3550)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHH---HHHHHhhcc
Confidence 4566777888888899999999999999999999999999999999999885 2335666664 455777888
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHH
Q 000196 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKES 1362 (1874)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~ 1362 (1874)
++++++.++...+...|+|++++.++|.+..+. +.+......++.++|.+||.+|+|.|..+|+|+..... ..+..+.
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~-~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~-~eT~~a~ 2490 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK-EMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF-PETMVAL 2490 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc-HHHHHHH
Confidence 889999999999999999999999999886543 11112334678899999999999999999999976553 4566788
Q ss_pred HHHHhcCHHHHHHHHHHHHhcc---CCCchhHH---hHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHH
Q 000196 1363 WYEKLQRWDDALKAYTNKASQA---SNPHIVLE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANA 1436 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~---~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~a 1436 (1874)
.||+.|.|++|+..|++.+... .-|.+..| +...||+|...|.||+.+.++++..-. . .+..++
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---~-------~llle~ 2560 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---Y-------ELLLEC 2560 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---c-------eeeeeh
Confidence 8999999999999999987432 11211122 568999999999999999999965321 1 266799
Q ss_pred HHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------hh--------------
Q 000196 1437 AWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------VL-------------- 1492 (1874)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~----------~~-------------- 1492 (1874)
+||+.||+.+++.+.+....... .......+|+++.++++.. +.
T Consensus 2561 aWrlsdw~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP 2628 (3550)
T KOG0889|consen 2561 AWRLSDWNDQKDALEQKAKSLSD------------VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLP 2628 (3550)
T ss_pred hccCCcchhHHHHHHHhhhccCC------------CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999987765432111 0133456777777665521 11
Q ss_pred h-hHHHHHHHHHHhHhhhhHHHHHHhh-cCCCCC----CchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC--
Q 000196 1493 E-SYERAYSNMVRVQQLSELEEVIDYC-TLPVGN----PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-- 1564 (1874)
Q Consensus 1493 e-sy~ray~~l~~lq~L~EleEii~~~-~~~~~~----~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-- 1564 (1874)
+ ++...++.+..+|++.|++|..++. ....++ ...-...+.+.++|++|+++.++|++.|.++++||+.+++
T Consensus 2629 ~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I 2708 (3550)
T KOG0889|consen 2629 ERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMI 2708 (3550)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 2 2233478899999999999998854 333332 1113456778999999999999999999999999998864
Q ss_pred -----C------------------cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHH
Q 000196 1565 -----P------------------TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLK 1621 (1874)
Q Consensus 1565 -----~------------------~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k 1621 (1874)
+ ++.++.-++||+.|||+|-.+.|.+-|.++.++ |+ -.+.-++.|
T Consensus 2709 ~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytl-p~-----------veiqdaF~K 2776 (3550)
T KOG0889|consen 2709 NKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTL-PN-----------VEIQDAFQK 2776 (3550)
T ss_pred HHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-Cc-----------chHHHHHHH
Confidence 2 133667789999999999999999999988765 21 245555656
Q ss_pred HHHhcCCcchHHHHHHHHHHH---HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000196 1622 YQWSLGEDLKRKEAFARLQTL---AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1874)
Q Consensus 1622 ~lw~~g~~~~~~~Al~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~ 1698 (1874)
+- +++...++.- ...++...+ ++. ..-..+..|..+.+.|.++.+++ ..++..
T Consensus 2777 ~r---------eq~~c~l~~~~e~~~gLevi~s----TNl-----~yF~~~q~aeff~lkG~f~~kL~------~~eeAn 2832 (3550)
T KOG0889|consen 2777 LR---------EQAKCYLQNKNELKTGLEVIES----TNL-----MYFSDRQKAEFFTLKGMFLEKLG------KFEEAN 2832 (3550)
T ss_pred HH---------HHHHHHhcChHHHHHHHHHHhc----ccH-----HHHhhHHHHHHHHhhhHHHHHhc------CcchhH
Confidence 52 3344444321 111111000 000 11235678999999999999985 347889
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000196 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1874)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1874)
+.|..|++++..-.|+|..||.|++..++... ....++.+||.||++++.+.+ .+.++..+.|+|+|.--
T Consensus 2833 ~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~------~ni~~a~~avsCyLqA~~~~~----~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2833 KAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP------VNISFACNAVSCYLQAARLYN----SSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------cccHHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999986431 114799999999999998864 34567778888888766
Q ss_pred cCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHh
Q 000196 1779 HGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVAC 1846 (1874)
Q Consensus 1779 ~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~ 1846 (1874)
+.+...+.+++.+.+..||+|.|+.|||||+.-+.+.+ ...+..+|.+|++.||||+.||+..+.
T Consensus 2903 dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~ 2967 (3550)
T KOG0889|consen 2903 DDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAR 2967 (3550)
T ss_pred ccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 66666889999999999999999999999999999988 477899999999999999999998764
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=431.79 Aligned_cols=684 Identities=17% Similarity=0.170 Sum_probs=500.0
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-
Q 000196 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV- 121 (1874)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~- 121 (1874)
|...|..+. ++.+..+..++.++.++.+...+++++++.++-. ...||..|+.+.. ..+.+.++..+|+..+++.
T Consensus 223 a~~~l~~l~--El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~-R~~ALe~ivs~~e-~Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 223 AKSALEALI--ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSI-RHLALEFLVSLSE-YAPAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred HHHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHHHHH-hhHHHhhhchhhhccHHHHH
Confidence 344444444 5668889999999999999988988876654322 4455555554431 1455666666666655542
Q ss_pred -------CCC--------------hHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 122 -------KRD--------------REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 122 -------~~d--------------~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
..| ......|.++++|++.+ ||... ++..++.+-..| ...+|..|+||+++|+.
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l-~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAML-QSTEWKERHAALLALSV 374 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 111 23678899999999987 43332 222233232233 46778999999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC-hhHHH
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP-VHSIH 258 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~ 258 (1874)
+++||++.|.+.+++|+++++++|+||||+||.||++|++++.+.+. +..+.+++..+.+.+...+.++.. +...|
T Consensus 375 i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCchHHHHH
Confidence 99999999999999999999999999999999999999999987765 446677888888888888877643 66778
Q ss_pred HHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 259 GSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 259 ~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
+|..+++...++.++.+.||++.+++ .+...++++.+.||+.|+++|+++|..+...|.+ |++.+||+|.++|.+.+
T Consensus 452 Aa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p-Y~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 452 AAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP-YFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHHHhCCCc
Confidence 99888888888999999999999999 6666678899999999999999999999999986 88999999999998754
Q ss_pred -----CcchHHHHHHHHHhhchh-hhhhhhHHHHHHHHHh---hcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 000196 337 -----ERDSGFIALGEMAGALDG-ELFHYLPTITSHLREA---IAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDI 407 (1874)
Q Consensus 337 -----~R~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~---L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ 407 (1874)
.|+..++|+|.++.+||+ .|.|+...+|+.+.+. ..+.+...+.+.+.+|+++|+.+|++|.||++.+||+
T Consensus 531 ~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmpp 610 (1075)
T KOG2171|consen 531 KDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPP 610 (1075)
T ss_pred hhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHH
Confidence 268899999999999996 5778888888887766 3333333346789999999999999999999999999
Q ss_pred HHhc-CCCHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000196 408 MFSA-GLSTTLVDALEQITV-SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1874)
Q Consensus 408 ll~~-~ls~~l~~~l~~i~~-~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1874)
++.+ .+.|+..-. ..-+. ....+ .. ++.+. +.++. ...+ .++ ...+++.|
T Consensus 611 l~~ta~~~p~~~~~-d~~d~e~~~~~-~~-----~e~~~--~~~~e--------------~~~I--~Ts---vl~eK~~A 662 (1075)
T KOG2171|consen 611 LLKTARLDPDVALS-DEEDEEEEQDL-DG-----WEVVE--LGDKE--------------NIGI--RTS---VLDEKETA 662 (1075)
T ss_pred HHHhhccCCcccCc-Cchhhhhcccc-cc-----chhhc--cCCce--------------eeee--eeh---hHHHHHHH
Confidence 9975 233322100 00000 00000 00 00000 00000 0000 011 12245789
Q ss_pred HHhhccccc-CCCcchhhHHHHHh---hhc-cCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHH
Q 000196 486 LQTLARFNF-KGHDLLEFARDSVV---LYL-DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1874)
Q Consensus 486 l~~L~~~~f-~~~~l~~~v~~~~~---~~l-~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1874)
+++|++|.- .+..|.||+.+++. +.+ .+.|++||++|+.+++.++.+....+. + ......+++..
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~--~--------~p~~l~~l~~~ 732 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ--G--------GPEYLKQLWEA 732 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc--c--------ChHHHHHHHHH
Confidence 999999943 24567788887643 333 467999999999999888876543220 0 11146788999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCC-CC------cchhhccH--hhHHHHH---HHhC---------CCC-------
Q 000196 561 LVEKLLIAAVADADVTVRHSIFSSLYGN-RG------FDDFLAQA--DCLSAIF---AALN---------DED------- 612 (1874)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~------f~~~L~~~--~~l~~L~---~~l~---------D~~------- 612 (1874)
+.+.++.....+|+++|-.+++++|+.+ +. ++++...- .+...+. ...+ |.+
T Consensus 733 ~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~ 812 (1075)
T KOG2171|consen 733 IRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL 812 (1075)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999998631 11 11111000 0011111 0011 111
Q ss_pred ----HHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHH
Q 000196 613 ----FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688 (1874)
Q Consensus 613 ----~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~l 688 (1874)
..+-..+.+++..+++...+.+.|.+..+....+..+... .... |+.|.+.++++++.+++...+|.+.+++.+
T Consensus 813 ~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~ 890 (1075)
T KOG2171|consen 813 DEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLV 890 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 1234567788899999999999999999888777777665 4445 999999999999999999999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc-----chhhHHHHHHHHHHHHhhccc
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-----AVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~-----~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
+..+.+. ++.|++++.+++|.+++.+|...++.+...+|.+...++... +...+++|+.++++++.+...
T Consensus 891 ~~~~~d~-----~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~ 965 (1075)
T KOG2171|consen 891 LEALQDS-----DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPN 965 (1075)
T ss_pred HHHcCCC-----CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCc
Confidence 9999985 899999999999999999999999999999999999987542 223458999999999988766
Q ss_pred cccccccchHHHHHHHHHhcCCCC
Q 000196 764 VITPYNEYPQLLGLLLKMLNGELV 787 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~~~ 787 (1874)
.+ | ++++++.+++.|-..++
T Consensus 966 ~i-~---vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 966 RI-P---VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred cC-c---HHHHHHHHHHhCCCccc
Confidence 53 2 46899999998854433
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=358.97 Aligned_cols=626 Identities=17% Similarity=0.230 Sum_probs=469.9
Q ss_pred CcHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 21 GSLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
.=|+++.++.+.|.++. +..++|..+|.+++|+.+..++.+...+.++-+..++.++++++++..|.-|+.++|++|-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 34899999999999987 67888989999999999999999999999999999999999999999999999999999877
Q ss_pred ccCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000196 100 ALGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1874)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~r~aA~ 174 (1874)
. ++...-+...||..+|.. +.|++||+..+.+|..|.+. .++-+.+++..++|++- .+.+++.-..|+
T Consensus 205 ~---~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 205 Q---TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred C---cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHH
Confidence 4 445566677888888764 45689999999999999886 33333445666666652 466778899999
Q ss_pred HHHHHHHhh--cCccchhchHHHHHHHHHhhcCCch--------------------------------------------
Q 000196 175 LILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTL-------------------------------------------- 208 (1874)
Q Consensus 175 ~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~-------------------------------------------- 208 (1874)
.+|..+|+. +++.+.||+++++|.++.+|+-.+.
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 999999998 6678999999999999999863221
Q ss_pred ------------hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000196 209 ------------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1874)
Q Consensus 209 ------------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1874)
.+|...+.||..+..+ .+.+.+..++|-+...|.+. .|.+++++++++|++++++.++|.
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLanv-------f~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~ 429 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLANV-------FGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFV 429 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHHh-------hHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcc
Confidence 2455556666555443 33456778888888888775 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHhhchh
Q 000196 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PA-ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~-~~-~R~~a~~alg~la~~v~~ 354 (1874)
||+.+++..++.+++++.+.||...|+++++.+.|.-.+--..|+.++|..++..+-+ .+ ..++|..++..+-+..|.
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998765433445888888887776543 33 357999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCch--HHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhCCC
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVME--PHVRGLLDIMFSA-G-LSTTLVDALEQITVSIPS 430 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~--p~l~~ll~~ll~~-~-ls~~l~~~l~~i~~~~p~ 430 (1874)
++.||+..|++.+.-+++....+.-.-.+.++|++|..+|..+. .|++-+||+|++. . ++++- +.
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-----------Kd 578 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-----------KD 578 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-----------ch
Confidence 99999999999999999776656556788999999999998764 4999999998862 1 22211 11
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhh
Q 000196 431 LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLY 510 (1874)
Q Consensus 431 l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~ 510 (1874)
+.| |++.++.+ +.|| |..|.||...+...-
T Consensus 579 LfP-----LLEClSsi------------------------------------a~AL---------~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 579 LFP-----LLECLSSI------------------------------------ASAL---------GVGFLPYAQPVYQRC 608 (885)
T ss_pred HHH-----HHHHHHHH------------------------------------HHHH---------hccccccCHHHHHHH
Confidence 111 22222211 1122 112223322221110
Q ss_pred ccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCC
Q 000196 511 LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRG 590 (1874)
Q Consensus 511 l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~ 590 (1874)
++ -+++ |..+..+....-..-...++.. -.+..+++.+. +.|+ ..
T Consensus 609 ~~----il~~-----t~q~~~~~~~~~~~~~pdkdfi----I~sLDL~SGLa--------------------egLg--~~ 653 (885)
T KOG2023|consen 609 FR----ILQK-----TLQLLAKVQQDPTVEAPDKDFI----IVSLDLLSGLA--------------------EGLG--SH 653 (885)
T ss_pred HH----HHHH-----HHHHHHhccCCccccCCCcceE----EEeHHHHhHHH--------------------HHhh--hc
Confidence 00 0110 1111111100000000000000 00123333332 2333 34
Q ss_pred cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH
Q 000196 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1874)
Q Consensus 591 f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1874)
..+.+++.+++..++.|+.|+.++||++++.++|.+++.++..|.|.+..++.-+...+... ....-.+|+|++|+++
T Consensus 654 ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~--~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE--NISVCNNAIWAIGEIA 731 (885)
T ss_pred hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh--hchHHHHHHHHHHHHH
Confidence 45667777889999999999999999999999999999999999999998776655444322 2344568999999999
Q ss_pred HhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHH
Q 000196 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA 750 (1874)
Q Consensus 671 ~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A 750 (1874)
...+...+||+.+++..|+..++... ...++..+...++|.|+...++.++|+++.++..++..++.-.+.+.++.|
T Consensus 732 ~k~g~~~~~~v~~vl~~L~~iin~~~---~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sA 808 (885)
T KOG2023|consen 732 LKMGLKMKQYVSPVLEDLITIINRQN---TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESA 808 (885)
T ss_pred HHhchhhhhHHHHHHHHHHHHhcccC---chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHH
Confidence 99999999999999999999988652 467788999999999999999999999999999999999877778899999
Q ss_pred HHHHHHHHhhcc
Q 000196 751 VSTLGQVVQSTG 762 (1874)
Q Consensus 751 ~~~Lg~l~~~~~ 762 (1874)
..+++.++.-..
T Consensus 809 FrG~c~mi~vNp 820 (885)
T KOG2023|consen 809 FRGLCNMINVNP 820 (885)
T ss_pred HHHHHHheeeCc
Confidence 999999876543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=377.85 Aligned_cols=311 Identities=37% Similarity=0.628 Sum_probs=251.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC-------------------
Q 000196 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK------------------- 1490 (1874)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~------------------- 1490 (1874)
||++++|||++|+||.|+++++..+.+ +.+..||+++.++++++
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l 63 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDEL 63 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999977642 33567888888887653
Q ss_pred ---hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC---
Q 000196 1491 ---VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP--- 1564 (1874)
Q Consensus 1491 ---~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~--- 1564 (1874)
..+||.|+|+.|+++|+|+||||++++......+ ....+.+.+.|++|++++++++++|++||++|+++++
T Consensus 64 ~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~ 140 (352)
T PF02259_consen 64 SALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLIL 140 (352)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998432221 4567789999999999999999999999999999999
Q ss_pred -CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1565 -PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1565 -~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
+.+..++|++|+++|||+|++++|.++|.++.++++..+. ..|.+.+|+||++|++|+ +.+|+..|+.++
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~---~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGE---QEEAIQKLRELL 211 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 8899999999999999999999999999999876543211 268999999999999996 689999999988
Q ss_pred H-HhcCCCcccc---c--------cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1644 M-ELSSCPVIQS---A--------ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1644 ~-~~~~~~~~~~---~--------~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
+ .+........ . ..............+.|++++++|+|..+++.....++.+++.+.|++|++++|+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 7 4432210000 0 00000011245578899999999999998721134578999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCC---CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLP---SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~---~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1874)
+|+||+||.+|+++++........ +...+|+..||+||++|+.+| ++++++++|||||
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~-----~~~~~~~~~RlLt 352 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG-----SKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC-----CCchHHHhhHhcC
Confidence 999999999999999876432110 246789999999999999986 5789999999996
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-29 Score=308.94 Aligned_cols=904 Identities=15% Similarity=0.181 Sum_probs=569.0
Q ss_pred HHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhcccc
Q 000196 24 DALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
.-+.+++++|.|+.+++++ |-+.|...- + ++. +...+..+. +++++.-|.-|...+..++....
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~----~--~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLA----K--TEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhh----c--ccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Confidence 4588999999999887776 533333222 1 111 222233333 35666656555555555543321
Q ss_pred Cc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGG-AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g-~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
.. +.....+.-.-|..++..-....|++.-|.++..+++.-. ..|+++++++++.+ .+.+...|..|+.+|..
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSS 144 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHh
Confidence 11 2222333434444444334578999999999999998622 26888877766654 34666899999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc----cCCCChh
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL----GRNAPVH 255 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l----~~~~~~~ 255 (1874)
+.+.-+..+.+|+..+.+....++.||+..||-+|.+|++.+...+. .+. ...+.+..++|.++..+ .+. +.+
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~-~~~-~~~~~~~~llP~~l~vl~~~i~~~-d~~ 221 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE-NNK-SEVDKFRDLLPSLLNVLQEVIQDG-DDD 221 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc-cch-HHHHHHHHHhHHHHHHhHhhhhcc-chH
Confidence 99999999999999999999999999988899999999999988764 111 22233455555554443 333 346
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhHhHhhhChhhH--HHHHHHHHHHHHHHh
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH--RDRLVRLSITSLLPRIAHFLRDRF--VTNYLKICMNHILTV 331 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~--~~~~vr~~~~~~i~~la~~~~~~f--~~~yl~~~~~~Ll~~ 331 (1874)
....++.+|.++++..+.++.+++.++++..+...++ -+..+|..++..|-.+++++|..- ...|.+++++.++..
T Consensus 222 ~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 222 AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 6788888999999999999999999999988887765 478899999999999999977532 123667777777776
Q ss_pred hcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhc-CCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHH
Q 000196 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA-PRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMF 409 (1874)
Q Consensus 332 L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~-~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll 409 (1874)
+....+- . ...+ .+.+. +....+...+.+++.+++..+|+ .+.|-+-+.++.|+
T Consensus 302 mte~~~D---------------~---ew~~------~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 302 MTEEEDD---------------D---EWSN------EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred cCCcccc---------------h---hhcc------ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 6432110 0 0000 00000 00112234555666666666664 34444444444444
Q ss_pred hcCCCHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHh
Q 000196 410 SAGLSTTLV-DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQT 488 (1874)
Q Consensus 410 ~~~ls~~l~-~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 488 (1874)
++.- -..+ .+|- .++.+-.|.+ + .+
T Consensus 358 ~S~~-w~~R~AaL~-------------------Als~i~EGc~--------------------------~--------~m 383 (1075)
T KOG2171|consen 358 QSTE-WKERHAALL-------------------ALSVIAEGCS--------------------------D--------VM 383 (1075)
T ss_pred cCCC-HHHHHHHHH-------------------HHHHHHcccH--------------------------H--------HH
Confidence 3210 0000 0010 1111100000 0 00
Q ss_pred hcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHH
Q 000196 489 LARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIA 568 (1874)
Q Consensus 489 L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~ 568 (1874)
.+ ..+-+-+.+++++.|+|+.||.||..+++++-.... +.......+.+..++..
T Consensus 384 ~~--------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-----------------p~iqk~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 384 IG--------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-----------------PEIQKKHHERLPPALIA 438 (1075)
T ss_pred HH--------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-----------------HHHHHHHHHhccHHHHH
Confidence 00 113344566788999999999999999888753211 01222334444333322
Q ss_pred HhcCCC-hhHHHHHHHhc---cC---CCCcchhhccHhhHH-HHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHH
Q 000196 569 AVADAD-VTVRHSIFSSL---YG---NRGFDDFLAQADCLS-AIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR 640 (1874)
Q Consensus 569 ~~~d~~-~~vR~~~l~~l---~~---~~~f~~~L~~~~~l~-~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~ 640 (1874)
...++. +.|...+..++ .+ ...+.+|| +.++. .+..+++...+.||+.++..||.++......+.||+..
T Consensus 439 ~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~ 516 (1075)
T KOG2171|consen 439 LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR 516 (1075)
T ss_pred HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 333433 35555444433 11 23345666 45566 55556677789999999999999999988889999999
Q ss_pred HHHHHHHHHhhCCCChH---hHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 641 HLIQLLTYLEQSSADNK---CREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 641 ~l~~~l~~l~~~~~~~~---~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
+|..+...+++. ++.+ .|....++++.++.+.+ +.|.|+...+++.++....+. .+.+...++..+..++.++
T Consensus 517 ~Mp~L~~~L~n~-~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~--~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 517 LMPLLKNFLQNA-DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD--QDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHHhCC-CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc--hhhccccHHHHHHHHHHHH
Confidence 887777777765 3222 35567788888888876 789999999999998875322 1224556677788999999
Q ss_pred HhcccchhhcHHhHHHHHHHHHhc--------Cc---------------------------chhhHHHHHHHHHHHHhhc
Q 000196 717 RVGGFGMRQYISELMPLIVEALLD--------GA---------------------------AVTKREVAVSTLGQVVQST 761 (1874)
Q Consensus 717 ~~~g~~~~~~~~~llp~l~~~l~d--------~~---------------------------~~~~r~~A~~~Lg~l~~~~ 761 (1874)
+..|++|.||++.+||.++...+- +. -.+.++.|...|+.++..+
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l 673 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL 673 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987631 10 0245678999999999999
Q ss_pred cccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccccc
Q 000196 762 GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841 (1874)
Q Consensus 762 ~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1874)
+..+.||.. +++...+..++-..+..||.+++.+++.+-. -. ++...+ . +. ...
T Consensus 674 k~~F~pYve--~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~--~~-~~A~~~---------------~----p~--~l~ 727 (1075)
T KOG2171|consen 674 KEAFAPYVE--QVVELMVPLLKFYFHDGVRKAAAESMPQLLT--CA-LKACQG---------------G----PE--YLK 727 (1075)
T ss_pred hhhhhhHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HH-HHHhcc---------------C----hH--HHH
Confidence 988999975 5677555666666678999999999887531 00 000000 0 00 001
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCC--CCccchhHHHHHHHhcCCcchhHHH
Q 000196 842 DLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV--PYLPKVLPDLFHTVRTCDDYLKDYI 919 (1874)
Q Consensus 842 ~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~--~~l~~ilp~ll~~l~~~~~~~~~~~ 919 (1874)
.+ -..+.+.++..+.++...+.-..+.+++...++.+|..|. +++..++-.++..+..
T Consensus 728 ~l-----------~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~--------- 787 (1075)
T KOG2171|consen 728 QL-----------WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQ--------- 787 (1075)
T ss_pred HH-----------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHH---------
Confidence 11 1356778888888776667777888888899999997763 3444443333332211
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccc
Q 000196 920 TWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999 (1874)
Q Consensus 920 ~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~ 999 (1874)
.+...-..+-...-++....-.+.....+ ......+..++.+++.+.+++|.|++..+.|.++..+...
T Consensus 788 -----~~~~~~~r~~~~~eed~d~~eee~~~e~d------~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 788 -----HFKRMQDRQEEDDEEDDDIEEEEDLDEQD------AYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK 856 (1075)
T ss_pred -----HHHHHHhhhhhhhhhhhhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC
Confidence 00000000000000000000001111110 0011245666777788899999999999999999999753
Q ss_pred cccCchhhHHHHHHHH-HHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHH
Q 000196 1000 ERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLV 1076 (1874)
Q Consensus 1000 ~~~~~~~~~~~il~~l-~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~ 1076 (1874)
. ...|.-...++.-+ .-.|+....|...++|.+...+... .++||++|...+|.++.. .++.+.+....+.|..+
T Consensus 857 ~-~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~-~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 K-TVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS-DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred C-cHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 3 32355444444433 3356777888889999999998754 789999999999999986 34666777788888888
Q ss_pred hCCCCH------HHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCC
Q 000196 1077 LDGKND------ELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1874)
Q Consensus 1077 l~~~~~------~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~ 1118 (1874)
+...+. ...+++..+++-++..-.. -.+ ++++.+.+...-
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~-~i~-vdqvl~~~l~~L 980 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPN-RIP-VDQVLPAWLSWL 980 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCc-cCc-HHHHHHHHHHhC
Confidence 876542 2346666677666655432 234 777777776653
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-29 Score=295.76 Aligned_cols=751 Identities=17% Similarity=0.219 Sum_probs=500.1
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-----------HHHhhcc
Q 000196 52 EEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSN-----------YMRTVFE 120 (1874)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~-----------~L~~~l~ 120 (1874)
+..+.+++.++|.+|+.-+.+-+. --++++..+..+|+...|.|..-+.........||.. ++.+.+.
T Consensus 22 e~~l~~~~~~nf~~F~~~Ls~vl~-n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~ 100 (859)
T KOG1241|consen 22 EKQLEQAQSQNFPQFLVLLSEVLA-NDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLG 100 (859)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-ccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 345667778889998876665221 1234566677889999999988864444566677763 5555553
Q ss_pred cCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHH
Q 000196 121 VKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVD 197 (1874)
Q Consensus 121 ~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~ 197 (1874)
+.++.....|+++++.+|.. +.+.|+++++.++..+.+ +.....|.+++.+++++++. .|..+..+.+.|+.
T Consensus 101 -~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 101 -SPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred -CCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 46788999999999999874 677899888887777653 44447899999999999998 78899999999999
Q ss_pred HHHHhhc--CCchhHHHHHHHHHHHHHHHHhh-cch-hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 198 AIWVALR--DPTLAVRERAVEALRACLRVIEK-RET-RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 198 ~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~-r~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
.|..+++ .|+..||-||..||-.+++++.. .+. .+++.+++.+++... .+ +.+++++|+.+|..+....-+
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq----~~-d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ----SP-DEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc----CC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 77899999999999999998873 221 144455555555443 33 578999998888888877778
Q ss_pred hhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000196 274 FMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1874)
Q Consensus 274 ~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v 352 (1874)
||.+|+.+ ++..-+....+.++.|...+++-+.++++- ++ +-.+. +....+++.. ...+ + ++
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE---Ei-----D~~~e-~~e~~d~~~~-p~~~---~-fa--- 313 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE---EI-----DLAIE-YGEAVDQGLP-PSSK---Y-FA--- 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HH-----HHHHH-HHHHhhcCCC-chhh---H-HH---
Confidence 99999998 666556666688899999888888877641 11 00000 0011111000 0000 0 00
Q ss_pred hhhhhhhhHHHHHHHHHhhcCCCCCC-------CchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000196 353 DGELFHYLPTITSHLREAIAPRRGKP-------SLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT 425 (1874)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~L~~~~~~~-------~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~ 425 (1874)
..-++.+++.+.+.|...+.+. ...+=.|+..+++.+|.++.|++ +
T Consensus 314 ----~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V---l-------------------- 366 (859)
T KOG1241|consen 314 ----RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV---L-------------------- 366 (859)
T ss_pred ----HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh---H--------------------
Confidence 0112344455555553221111 12455666666666665544422 2
Q ss_pred HhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHH
Q 000196 426 VSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505 (1874)
Q Consensus 426 ~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~ 505 (1874)
||++
T Consensus 367 ---------------------------------------------------------------------------~Fie- 370 (859)
T KOG1241|consen 367 ---------------------------------------------------------------------------PFIE- 370 (859)
T ss_pred ---------------------------------------------------------------------------HHHH-
Confidence 2222
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.-+.+|++.-|.+|+.+.+..+.- |++.-+.
T Consensus 371 ---e~i~~pdwr~reaavmAFGSIl~g----------------------------------------p~~~~Lt------ 401 (859)
T KOG1241|consen 371 ---ENIQNPDWRNREAAVMAFGSILEG----------------------------------------PEPDKLT------ 401 (859)
T ss_pred ---HhcCCcchhhhhHHHHHHHhhhcC----------------------------------------Cchhhhh------
Confidence 124456777777777776655421 1100000
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch--HHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP--ALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p--~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
+.. +..++.+...+.|++.-||.++.+.+|+++.++|..+.+ ++...+.-++..+.+ .++...++|
T Consensus 402 -------~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~C 469 (859)
T KOG1241|consen 402 -------PIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVC 469 (859)
T ss_pred -------HHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHH
Confidence 000 123666777788999999999999999999999976543 223333344445543 478888999
Q ss_pred HHHHHHHHhCcc---------ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHH
Q 000196 664 KLLGCLIRNCER---------LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 664 ~~L~~l~~~~~~---------~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l 734 (1874)
|.+..+++++.+ ...||++.|+..|+......+ ...++.+.++..+|+++.........+-+..+.+.+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 999999975432 345788999999888755421 136778999999999999998887777766666666
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcc
Q 000196 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 735 ~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
...|... +. +++...... ..+-+|-..|.+.|.. -+| .+| |
T Consensus 548 l~kl~q~---------i~--~~~l~~~dr-----~q~~eLQs~Lc~~Lq~----i~r--------k~~---~-------- 588 (859)
T KOG1241|consen 548 LEKLDQT---------IS--SQILSLADR-----AQLNELQSLLCNTLQS----IIR--------KVG---S-------- 588 (859)
T ss_pred HHHHHHH---------HH--HHhccHhhH-----HHHHHHHHHHHHHHHH----HHH--------Hcc---c--------
Confidence 6555321 11 111100000 0011222222222210 011 000 0
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~ 894 (1874)
+ -.-+.+.+++.+++++..+.-...|+.++-|+..+..++|..|.
T Consensus 589 --------------------~---------------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 589 --------------------D---------------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred --------------------c---------------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 0 00134678899999997754456789999999999999999999
Q ss_pred CCccchhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~~-~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1874)
.|++.+.|-+...++++.+. +-..+....|.+.+.++..|.||.++++..+.+.++.+.++.. ....++++.+.|
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~----vKP~IlS~FgDI 709 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRN----VKPAILSVFGDI 709 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccc----ccchHHHHHHHH
Confidence 99999999999999887654 3345556789999999999999999999999999988765433 234899999999
Q ss_pred HHHhhhhhhccchhhHHHHHHhcc-cccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH
Q 000196 974 CLALNDEFRTHLPVILPCCIQVLS-DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET 1052 (1874)
Q Consensus 974 ~~~l~~~f~~yl~~llp~ll~~l~-~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~ 1052 (1874)
+.++|.+|.+|+..++|.+...-+ ..|.. + ....+|+ .++|+.++++
T Consensus 710 AlaIg~~F~~Yl~~vm~llq~as~~~~d~~-~---------------~~~~dYv----------------d~LRe~~lea 757 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMVMPLLQQASSVQTDPA-D---------------DSMVDYV----------------DELREGILEA 757 (859)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCC-c---------------ccHHHHH----------------HHHHHHHHHH
Confidence 999999999999999998766542 11110 0 0111222 4556666666
Q ss_pred HHhhccc-------ccccchhHhHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhccccccc
Q 000196 1053 LTRLIPR-------VQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIF 1106 (1874)
Q Consensus 1053 l~~l~~~-------~~~~~~~~~ii~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ 1106 (1874)
...+..+ ..+.||+++|++.+-++-..++ ..+...|+..+++|+..+|++...|
T Consensus 758 y~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 758 YTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred HHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 5555443 2256899999999888887654 4688999999999999999775543
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=272.87 Aligned_cols=537 Identities=20% Similarity=0.273 Sum_probs=397.4
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1874)
...+++++...-.-|..++.++..-... +. ++.-..+.++.+++++++- +..+++.+|..++.+++
T Consensus 134 ~~~L~s~d~n~~EgA~~AL~KIcEDsa~------~l------ds~~~~rpl~~mipkfl~f-~~h~spkiRs~A~~cvN- 199 (885)
T KOG2023|consen 134 CELLDSPDYNTCEGAFGALQKICEDSAQ------FL------DSDVLTRPLNIMIPKFLQF-FKHPSPKIRSHAVGCVN- 199 (885)
T ss_pred HHHhcCCcccccchhHHHHHHHHhhhHH------HH------hhhcccCchHHhHHHHHHH-HhCCChhHHHHHHhhhh-
Confidence 3445555555555566666665432211 00 0001235578889999875 68899999999999986
Q ss_pred CCCcchh------hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 588 NRGFDDF------LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 588 ~~~f~~~------L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
.|... ..-..++..+|...+|++++||..++..+.-|.+..|..++|+++.++.-.+...+. .+....-+
T Consensus 200 --q~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd--~dE~VALE 275 (885)
T KOG2023|consen 200 --QFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD--VDENVALE 275 (885)
T ss_pred --heeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC--cchhHHHH
Confidence 22211 112357889999999999999999999999999999999999999876555554443 35557789
Q ss_pred HHHHHHHHHHh--CccccccchHHHHHHHHHHhhccC----------C----C---------------------------
Q 000196 662 SAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGT----------G----I--------------------------- 698 (1874)
Q Consensus 662 a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~----------~----~--------------------------- 698 (1874)
||+.+..+++. +...+.||++.++++|+..+.-.+ + +
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 99999999986 678899999999999998764210 0 0
Q ss_pred C----------CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccccccc
Q 000196 699 N----------ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1874)
Q Consensus 699 ~----------~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~ 768 (1874)
+ .+.+++...+.+++.|+.+.|+++ ++.++|.+.+.|... .+.+|++++.+||.+++++-.-+.||
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~ 431 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL---LPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPH 431 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccc
Confidence 0 125677788889999999988765 557788888888754 68999999999999999987766676
Q ss_pred ccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCC
Q 000196 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848 (1874)
Q Consensus 769 ~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 848 (1874)
. |+|++.+++.|.+ +.+-||.-++++++..| +|. . ..
T Consensus 432 L--peLip~l~~~L~D-KkplVRsITCWTLsRys---~wv---~----------------------------------~~ 468 (885)
T KOG2023|consen 432 L--PELIPFLLSLLDD-KKPLVRSITCWTLSRYS---KWV---V----------------------------------QD 468 (885)
T ss_pred h--HHHHHHHHHHhcc-CccceeeeeeeeHhhhh---hhH---h----------------------------------cC
Confidence 4 8999999999964 46789988877777644 111 0 01
Q ss_pred CCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 849 ~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
..++|+..+.. .|++.+-|.. ..++++++.|+..+-+..|...+||+..|+..+..+++.....-.-.+++++|++.+
T Consensus 469 ~~~~~f~pvL~-~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 469 SRDEYFKPVLE-GLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred ChHhhhHHHHH-HHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 12345555444 4444444543 246778888888888889999999999999999999987765545577899999999
Q ss_pred HHHHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccc-------
Q 000196 929 IVRQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA------- 999 (1874)
Q Consensus 929 ~~~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~------- 999 (1874)
.+|.+.. .|++-+++-+.+.|...+. + ++...+++.|+++++.+++..|.||.++++....+++.+.
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd--~--DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSD--S--DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCc--c--cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999874 7999999999999986542 1 2234589999999999999999999999999988888621
Q ss_pred --cc---cCch---hhHHHHHHHHHH-Hhcchhhhhhh--hHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchh
Q 000196 1000 --ER---CNDY---TYVLDILHTLEV-FGGTLDEHMHL--LLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHI 1066 (1874)
Q Consensus 1000 --~~---~~~~---~~~~~il~~l~~-~g~~~~~~~~~--ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~ 1066 (1874)
+. ..++ .+++.+++.+.. +|+.+++.+.. ++..+...+.. ...+||++|...+|++++. ..+.|++
T Consensus 623 ~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~ 701 (885)
T KOG2023|consen 623 QQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL 701 (885)
T ss_pred cCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHhccchH
Confidence 00 1122 224566666654 67766665532 44455555544 4688999999999999886 4467888
Q ss_pred HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1067 SSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1067 ~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
...+..+...++..+-...++|..++|.++.++|.+..+|++.|..-+.-
T Consensus 702 ~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ 751 (885)
T KOG2023|consen 702 ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLIT 751 (885)
T ss_pred HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH
Confidence 88888887777766678999999999999999999999998777765543
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-23 Score=233.83 Aligned_cols=691 Identities=15% Similarity=0.157 Sum_probs=432.0
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-------HHH----hh
Q 000196 52 EEQARDLGGEAFSRFMDQLYDRISGLL--ESNDAAENLGALRAIDELIDVALGENASKVSKFSN-------YMR----TV 118 (1874)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~--~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~-------~L~----~~ 118 (1874)
|.++.+++...|.+|+.-+.+ .++ ++.+.-+-.+|+...++|+.-++....+...||.. +++ +.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~q---vl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~a 102 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQ---VLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRA 102 (858)
T ss_pred HHHHHHhccccHHHHHHHHHH---HHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 457889999999999877776 344 33444445678888899987764333444455542 332 23
Q ss_pred cccCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHH
Q 000196 119 FEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEF 195 (1874)
Q Consensus 119 l~~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~i 195 (1874)
+. +.++.....|++.++.+|.- +.+.++++++..+..+- ++..++.+.+++.+++.+++. +|..+...-+.+
T Consensus 103 L~-s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg----~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 103 LK-SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVG----DEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred hc-CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcc----ccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 32 46789999999999999874 67788888777776654 456778899999999999998 676777777777
Q ss_pred HHHHHHhhc--CCchhHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000196 196 VDAIWVALR--DPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1874)
Q Consensus 196 l~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1874)
+-.|..+-+ .+...||-+|..||-..+..+...- ..+++.+++.+++... . ++.+.+|++.-+|..+....
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq----~-~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQ----G-NDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhcc----C-CcHHHHHHHHHHHHHHHHHH
Confidence 777766543 6788999999999998666665421 1245555666655443 2 35788999888888877766
Q ss_pred hhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhh----------Ch------hhHHHHHHHHHHHHHHHhhcC
Q 000196 272 GEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHF----------LR------DRFVTNYLKICMNHILTVLRI 334 (1874)
Q Consensus 272 ~~~~~~~~~~i~~~l-l~~~~~~~~~vr~~~~~~i~~la~~----------~~------~~f~~~yl~~~~~~Ll~~L~~ 334 (1874)
-+||.+|+++.+..+ .+...+.+..|...+++-+..+++- .| ..|.......++|.|++.|.+
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 689999999866544 4556788999999999999888742 11 124444456688888888866
Q ss_pred CCC---------cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHH
Q 000196 335 PAE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGL 404 (1874)
Q Consensus 335 ~~~---------R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~l 404 (1874)
..+ ..+|-.||..+++.+|+.+ +.++...+.+.+...+-+.++.+..+||.+...-.+ -++|++++.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i---~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKI---MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHh---HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 321 2478888888888888753 233555555555444334445667777766552111 144555554
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000196 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1874)
Q Consensus 405 l~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1874)
+|-+.
T Consensus 410 lp~i~--------------------------------------------------------------------------- 414 (858)
T COG5215 410 LPGIE--------------------------------------------------------------------------- 414 (858)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 44322
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHH
Q 000196 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1874)
Q Consensus 485 Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1874)
T Consensus 415 -------------------------------------------------------------------------------- 414 (858)
T COG5215 415 -------------------------------------------------------------------------------- 414 (858)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHH
Q 000196 565 LLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHL 642 (1874)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l 642 (1874)
..++|+..-|...+.+++|+++.+.|..+.|.- ....
T Consensus 415 -----------------------------------------n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 415 -----------------------------------------NEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred -----------------------------------------HhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 111111112222222222222222211111100 0000
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHHHHHH-------hCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLGCLIR-------NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~-------~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
...+..+.+ .++....++|.+..++. +.++.+.||...|+..|+...... ..+.+.+...+.++|.|
T Consensus 454 sa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 454 SASLIGLMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHH
Confidence 011111211 12333334444444443 335667788889999888875432 13566778889999999
Q ss_pred HHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 716 a~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
....++...+.+..+.....+.| +..+..+|++...-.. ....++...++..
T Consensus 528 i~~~~d~V~~~~a~~~~~~~~kl---------~~~isv~~q~l~~eD~-----~~~~elqSN~~~v-------------- 579 (858)
T COG5215 528 ILICPDAVSDILAGFYDYTSKKL---------DECISVLGQILATEDQ-----LLVEELQSNYIGV-------------- 579 (858)
T ss_pred HhhcchhHHHHHHHHHHHHHHHH---------HHHHHHhhhhhhhHHH-----HHHHHHHHHHHHH--------------
Confidence 98887766665555444444333 2334445543321110 0011222222222
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhH
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~ 875 (1874)
+.|+-.-+ + ++++. -.+.+++.++++|........|
T Consensus 580 -----l~aiir~~-------~-----------------~~ie~---------------v~D~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 580 -----LEAIIRTR-------R-----------------RDIED---------------VEDQLMELFIRILESTKPTTAF 615 (858)
T ss_pred -----HHHHHHhc-------C-----------------CCccc---------------HHHHHHHHHHHHHhccCCchhh
Confidence 21110000 0 01110 1245778888888755455678
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCC
Q 000196 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLP 955 (1874)
Q Consensus 876 ~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~ 955 (1874)
..|..||..+..+++.+|..|++.++|-+...++..+.-+...+...+|.+...++..|++|.+.++..+.+.+....++
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~ 695 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH 695 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc
Confidence 89999999999999999999999999999999944443455667778899999999999999999999999988875533
Q ss_pred cccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc--------hhhHHHHHHHHHHHhcchhhhhh
Q 000196 956 ATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND--------YTYVLDILHTLEVFGGTLDEHMH 1027 (1874)
Q Consensus 956 ~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~--------~~~~~~il~~l~~~g~~~~~~~~ 1027 (1874)
. .+...++++.+.|+.++|.+|.+|+..++-++.+.-+- +...+ ......+..+++.+|....+.+.
T Consensus 696 R----~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~-~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~ 770 (858)
T COG5215 696 R----DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASEL-DPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVR 770 (858)
T ss_pred c----ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 2 23458999999999999999999999999877665431 11111 11123455566666666555555
Q ss_pred hhHHHHHHhh
Q 000196 1028 LLLPALIRLF 1037 (1874)
Q Consensus 1028 ~ilp~l~~~~ 1037 (1874)
.++|.+..++
T Consensus 771 ~v~Pyv~sif 780 (858)
T COG5215 771 SVLPYVISIF 780 (858)
T ss_pred HhhhHHHHHH
Confidence 5555554433
|
|
| >KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=293.25 Aligned_cols=616 Identities=18% Similarity=0.217 Sum_probs=385.8
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHH---HHHHHHHHHH-HH
Q 000196 1185 QRSTKEDWAEWMRHLSIELLKES----PSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNAT---SQKHLVQSLE-MA 1256 (1874)
Q Consensus 1185 ~~~~~~~w~~W~~~~~~~ll~~s----ps~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~---~~~~l~~~l~-~~ 1256 (1874)
+..+.+.|..|+..++..++... +-.. +..++--....+-.-|.+|....++. ........|. .+
T Consensus 1617 ~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------~st~~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~ 1689 (2806)
T KOG0892|consen 1617 QQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------LSTYMANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELI 1689 (2806)
T ss_pred hhhhccchhhHHHHHHHHHHHHHhccCCchh-------hccccccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 45678899999999998876541 2121 12233333333444445555444443 2222333332 23
Q ss_pred hCCC-CCChHHHHHHHHHHHHhhhCCC-----------CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCc
Q 000196 1257 FSSP-NIPPEILATLLNLAEFMEHDEK-----------PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP 1324 (1874)
Q Consensus 1257 l~~~-~~p~~i~~~ll~l~e~m~~~~~-----------~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~ 1324 (1874)
+.+- ....++..+-+|+.++..++.. .++++.......+.+|..|...+.+.-.+.... ...
T Consensus 1690 ~~sl~~n~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~------k~~ 1763 (2806)
T KOG0892|consen 1690 LSSLLKNSNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKN------KRD 1763 (2806)
T ss_pred hhccccchhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------chh
Confidence 3332 2335688888999999877543 356666677777778888877776654433211 112
Q ss_pred HHHHHHHHHH----HhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHH
Q 000196 1325 VAVVEALIHI----NNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRC 1400 (1874)
Q Consensus 1325 ~~~~e~L~~i----y~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~c 1400 (1874)
...+..|+++ |.++|+||+.+|+........ .++ .-+|+.++|..|+..|+-.- ..+. .+...|.++.
T Consensus 1764 e~~~~~lqDil~~~y~~I~~pD~lyG~~~~~~~~~-~~l--~~~~he~~w~~aL~~~d~~~-~~~s----s~~~~~~~~s 1835 (2806)
T KOG0892|consen 1764 ELDITLLQDILKKAYESINCPDALYGIKRPTSLKN-LIL--ITAEHEKNWPRALSYYDLAD-MYPS----SEDEAGFINS 1835 (2806)
T ss_pred HHHHHHHHHHHHHHHhhCCCcchhcccCCcccccc-ccc--chhhhhhhHHHHHHhhcchh-hccc----hHhHhHHHHH
Confidence 3444555555 999999999999987543322 222 23899999999999998653 2222 2455999999
Q ss_pred HHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhh---cCCCCcchhhccccccccCCCCCch
Q 000196 1401 LAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSR---LDDGDESKLRGLGNTAANGDGSSNG 1477 (1874)
Q Consensus 1401 l~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1874)
|.+.|.-.-+.-+.++.|.. +..++......-++|||++|+||....+... .. ++. .+ .
T Consensus 1836 Lq~~g~~~I~~~y~~Gl~~~-~~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~~~~~~-~~~--y~--------------e 1897 (2806)
T KOG0892|consen 1836 LQNAGFFHILEFYIDGLKSN-DKIDEPSNEELVYEAAWRLGKWDILTLSLVDQNKTK-GDY--YH--------------E 1897 (2806)
T ss_pred HHHhcchhHHHHHhcChhhh-hhhhhhhhhhhhHHHHHhcCCcccCCcchhhhhhhh-chh--HH--------------H
Confidence 99999988888888887754 2455555556778999999999998776622 11 110 00 1
Q ss_pred HHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHH
Q 000196 1478 TFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIR 1535 (1874)
Q Consensus 1478 ~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~ 1535 (1874)
..|.+..+++... ..|+-.--|..+.++|.+.++|-+.+.--.... +.....+.
T Consensus 1898 ~~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~----~~~~~~~~ 1973 (2806)
T KOG0892|consen 1898 SLFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADK----HQSNTDIL 1973 (2806)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcc----hhhhhHHH
Confidence 1233333333321 345666679999999999999999874432111 23334566
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhhcCCc-----------ccHHH-----HHHHHHHHHhcCChhHHHH---HHHHHh
Q 000196 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPT-----------EDVET-----WLKFASLCRKSGRISQARS---TLVKLL 1596 (1874)
Q Consensus 1536 ~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-----------e~~~~-----wlk~a~laRk~g~~~~a~~---~L~~l~ 1596 (1874)
-.|++-++...+.++..+..+.-|+.+++.. ++... -+....++|.....+.-.+ ++....
T Consensus 1974 ~k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~ 2053 (2806)
T KOG0892|consen 1974 QKWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIM 2053 (2806)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHH
Confidence 7788888888888888888888888776522 11100 1122233333332222222 111111
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000196 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1874)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1874)
... .-...++.+...|+.+.. +..+++-.....-++..- ..+. ........+.....|+.
T Consensus 2054 ~~~------------~~~~~~s~aq~~~k~~~~-~~~e~iL~~~~~kne~~~--~~s~-----~~~~~~~lk~~~~~~~a 2113 (2806)
T KOG0892|consen 2054 LSI------------KLLCKFSLAQENLKHDID-KLSEAILWQRDEKNEAII--SLSE-----SLAKNNSLKEFPSDIYA 2113 (2806)
T ss_pred HHH------------HHHhhhhhhhhhccchhh-hhHHHHHHHHHhhhhHHH--HHHh-----hhhhcchhhhhHHHHHH
Confidence 100 011122333344444332 112222111111000000 0000 00001112355678999
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHH-HHhhcccc------------hHHHHHHHHHHHHHHHhhhcc-----------
Q 000196 1677 KLGSWKRALPPGLDDESIPEIIAAYRN-ATQCATKW------------GKAWHSWALFNTAVMSHYTLR----------- 1732 (1874)
Q Consensus 1677 ~~g~w~~~~~~~~~~~~~~~i~~~y~~-a~~~~~~~------------~k~w~~wA~~n~~~~~~~~~~----------- 1732 (1874)
.+|+|..+++ .+....|++.|.. |.....++ .++|.+.|+|-|..+...+.+
T Consensus 2114 ~~g~Wlaetk----~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~ 2189 (2806)
T KOG0892|consen 2114 VLGKWLAETK----SENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKD 2189 (2806)
T ss_pred HHHHHHHHhh----ccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHH
Confidence 9999999886 3566777777754 43332221 368888888877665432210
Q ss_pred -------C--------------------------------CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1733 -------G--------------------------------LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1733 -------~--------------------------------~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
+ .+..+.+|+..|++||++++..+ .+|...-+.|..
T Consensus 2190 l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~-----~~~D~~~i~R~c 2264 (2806)
T KOG0892|consen 2190 LQKLERSTVEASNEREEQMRKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSES-----DEYDVDLIFRCC 2264 (2806)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-----ccccHHHHHHHh
Confidence 0 01245679999999999999885 567777899999
Q ss_pred HHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCC---
Q 000196 1774 TLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIH-SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSI--- 1849 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~-~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~--- 1849 (1874)
++||++.+..++++.+++.+.+||+|+|++|+.||.||++ ..+..+++.+..|+.+++++||+|++|.|+......
T Consensus 2265 slWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~ 2344 (2806)
T KOG0892|consen 2265 SLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDN 2344 (2806)
T ss_pred hhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcCh
Confidence 9999999999999999999999999999999999999999 688899999999999999999999999999876322
Q ss_pred ----------cHHHHHHHHHHHHHHhhccCccc
Q 000196 1850 ----------SNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1850 ----------~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
+..|+.+|+.++...+.-.|.+|
T Consensus 2345 e~~n~sr~sl~~~rki~a~l~~~~v~~~~~~~v 2377 (2806)
T KOG0892|consen 2345 EDENRSRGSIDRDRKIAAELDLCDVNQGAGNMV 2377 (2806)
T ss_pred hhhhhcccccchhHHHHHHHhhhHhhccchhHH
Confidence 25677888888888777766655
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-20 Score=227.68 Aligned_cols=802 Identities=17% Similarity=0.185 Sum_probs=492.7
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
...++-++..| +|++.....-|+..++-++...|. -++..+++.+..++-......|+.+.-+|......+.-...
T Consensus 46 ~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 33455555555 455556677788888888854443 47778888888887777778888888888876554431111
Q ss_pred -hhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000196 231 -RWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1874)
Q Consensus 231 -~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~l 308 (1874)
.......+.+.+.+..++....+ ..++--++-.++.++...|+++.+.-..+...++..+.+....||+.++.+|+.+
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 12334566777777776654332 2356667778888888788888775555677777777888899999999999999
Q ss_pred hhhChhhHHHHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC---CCCCCchh
Q 000196 309 AHFLRDRFVTNYLKICMNHILTVLRIPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR---RGKPSLEA 382 (1874)
Q Consensus 309 a~~~~~~f~~~yl~~~~~~Ll~~L~~~~---~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~---~~~~~~~a 382 (1874)
|.+.+.. .+..++.+|+.-|.+.. .-....+|||.++++.|.++..+++.+++.+.++.... +.+.++..
T Consensus 202 a~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 202 ASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 9988763 23677888888776542 23478899999999999999999999999999988433 22334678
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 000196 383 LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462 (1874)
Q Consensus 383 ~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~ 462 (1874)
+++++.+......++.||.++++..+++ .|+ |+|
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~-------------------------------yis-------YDP-------- 311 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLS-------------------------------YIS-------YDP-------- 311 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHH-------------------------------Hhc-------cCC--------
Confidence 8999999988888888998887776442 221 111
Q ss_pred CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC--ChHHHHHHHHHhHHhhhccCCCCccc
Q 000196 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE--DKATRKDAALCCCKLVANSFSGVSFT 540 (1874)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~--~~~VR~aAa~~~~~l~~~~~~~~~~~ 540 (1874)
+. ..+++|. ++ + +++..-+. + + .-..|-|++ .+.||+||++++..++..-.+
T Consensus 312 --Ny---~yd~~eD-ed-----~-~~~ed~eD--d---e----~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E----- 365 (1233)
T KOG1824|consen 312 --NY---NYDTEED-ED-----A-MFLEDEED--D---E----QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE----- 365 (1233)
T ss_pred --CC---CCCCccc-hh-----h-hhhhcccc--c---h----hccccccccchhHHHHHHHHHHHHHHHhccHH-----
Confidence 00 0000000 00 0 00000000 0 0 012555544 589999999998888753221
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc----CCC-----------------Ccch-hhc--
Q 000196 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY----GNR-----------------GFDD-FLA-- 596 (1874)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~----~~~-----------------~f~~-~L~-- 596 (1874)
........+-+.++. -+.|.++.|+..++.++- ... .++. +|.
T Consensus 366 ------------~L~~~~q~l~p~lI~-RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 366 ------------MLPDFYQTLGPALIS-RFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred ------------HHHHHHHHhCHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 122233333333443 368889999988777641 001 1111 121
Q ss_pred cHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHH-HHHHHHHhCcc
Q 000196 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK-LLGCLIRNCER 675 (1874)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~-~L~~l~~~~~~ 675 (1874)
.+.+++.+-..+.+.+-..|..++..|..+....|....+++...+.-....+.+-+.....+..++. +.+.++.+.++
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 23456666666677777789999999999999999877666665555555544332123334445544 44556677889
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-------ccchhhcHHhHHHHHHHHHhcC-cchhhH
Q 000196 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-------GFGMRQYISELMPLIVEALLDG-AAVTKR 747 (1874)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-------g~~~~~~~~~llp~l~~~l~d~-~~~~~r 747 (1874)
.|.||+..+.+.++....++ .+.+...++.+.+.+..+. +-+..||+.+++...++.|... .+.++|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~-----fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDP-----FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred hcccchhhhhhHHHHHhcCc-----hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999998875 7888888888888888754 3467899999999999988632 367899
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCC
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~ 827 (1874)
+.|+.++|+++...|+... .+.|..++.++.-++++ .+|..|+|++..+.. .|...
T Consensus 588 eraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~-S~l~i------------------ 643 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLG--NELPRTLPILLERLGNE---ITRLTAVKALTLIAM-SPLDI------------------ 643 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhch---hHHHHHHHHHHHHHh-cccee------------------
Confidence 9999999999999997644 34688999999998866 689999999887642 11110
Q ss_pred CCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC-ccchhHHHHH
Q 000196 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFH 906 (1874)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~-l~~ilp~ll~ 906 (1874)
+ + .+. .+-+++.|...++-.. .....+...++..++++.+....++ ++.++-.+..
T Consensus 644 ---------~-----l---~~~-----l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 644 ---------D-----L---SPV-----LTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred ---------e-----h---hhh-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 0 0 010 1223333333332211 1223345666667777776655433 3444444444
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000196 907 TVRTCDDYLKDYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1874)
Q Consensus 907 ~l~~~~~~~~~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1874)
.+..++-.+-+.++..+.++...- -.+-.+++++|+..+.. +-++.. . ...++....+++..-..++.
T Consensus 701 Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S----pllqg~---a-l~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 701 LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS----PLLQGG---A-LSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC----ccccch---H-HHHHHHHHHHHHhcCCCCcc
Confidence 444443334445555555554322 23345667776666543 222110 0 01233333333333333333
Q ss_pred ccchhhHHHHHHhccccccc-----CchhhHHHHHHHHHHHhcchhhhhhhhHHHH-HHhhcCCCcHHHHHHHHHHHHhh
Q 000196 983 THLPVILPCCIQVLSDAERC-----NDYTYVLDILHTLEVFGGTLDEHMHLLLPAL-IRLFKVDAPVDIRRAAIETLTRL 1056 (1874)
Q Consensus 983 ~yl~~llp~ll~~l~~~~~~-----~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l-~~~~~~~~~~~vr~~ai~~l~~l 1056 (1874)
| -.++..+..+-.. ..+..-..+-.|...+.....+--..+.-.+ .++........+|.-|+-++|++
T Consensus 773 -y-----~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 773 -Y-----ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred -H-----HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 3 3344444332110 1111111222222222222222222222222 33333346788999999999999
Q ss_pred cccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHH
Q 000196 1057 IPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLL 1115 (1874)
Q Consensus 1057 ~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~ 1115 (1874)
.+..+.++.. .+-..++..+++++++++.+|-.+||.+.. | ....|+|-|...+.
T Consensus 847 gr~~~~s~~~-e~~~~iieaf~sp~edvksAAs~ALGsl~v--g-nl~~yLpfil~qi~ 901 (1233)
T KOG1824|consen 847 GRRKDLSPQN-ELKDTIIEAFNSPSEDVKSAASYALGSLAV--G-NLPKYLPFILEQIE 901 (1233)
T ss_pred ccCCCCCcch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhc--C-chHhHHHHHHHHHh
Confidence 9987765532 223355688999999999999999999976 1 23345555555443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-19 Score=217.88 Aligned_cols=918 Identities=15% Similarity=0.168 Sum_probs=539.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHcCCC---CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHH----HHHHHhhhcCCChh
Q 000196 12 GPPAPGAGGGSLDALNRILADLCTHG---NPKEGASLALRKHIEEQARDLGGEAFSRFMDQL----YDRISGLLESNDAA 84 (1874)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~L~s~~---~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l----~~~i~~l~~s~~~~ 84 (1874)
+|| -....-++.++.++...|++.. ++..++--+..+++...+.. |..+++.. ...+.--+.++-..
T Consensus 116 l~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr-----~g~ll~~fh~~il~~l~~ql~s~R~a 189 (1233)
T KOG1824|consen 116 LPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR-----FGTLLPNFHLSILKCLLPQLQSPRLA 189 (1233)
T ss_pred CCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh-----hcccCcchHHHHHHHHhhcccChHHH
Confidence 677 4556778889999999998764 33333333333443333222 22222222 23233335677778
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--
Q 000196 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-- 162 (1874)
Q Consensus 85 ~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-- 162 (1874)
.|+.++.|++.|.....++ ........|..=+++.......+.--++++.++...|.....+.++.++.+.+|..
T Consensus 190 VrKkai~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 8899999999997654222 11222333333333334567778888999999998777777777888888888874
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++.++..|...+++++.+.+.||.-+.||.+.|+..++..+. ||+..=-.. -+--.+.++. .+...+
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed---~eDde~-------- 334 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLED---EEDDEQ-------- 334 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhc---cccchh--------
Confidence 445567999999999999999999999999999999999986 887532110 1111111111 111110
Q ss_pred HHHHhhccCCC--ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC-------
Q 000196 242 EATQDGLGRNA--PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------- 312 (1874)
Q Consensus 242 ~~~~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~------- 312 (1874)
.+.-.|.+ +|.+|.+|+.++..++....|.+...+..++..+.+.++.|++.|+..++++.-.+-...
T Consensus 335 ---~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 335 ---DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred ---ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01112222 499999999999999998888888889999999999999999999999887765543111
Q ss_pred ---------hhhHHHHHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCC
Q 000196 313 ---------RDRFVTNYLKICMNHILTVLRI------PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGK 377 (1874)
Q Consensus 313 ---------~~~f~~~yl~~~~~~Ll~~L~~------~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~ 377 (1874)
+..|-..++.+..+.+.+.+.+ -+.|..+|..|.++....++.+.++++.+++.|.-.|.+++..
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 1112235777777777766643 2356789999999999999889999999999999999876543
Q ss_pred C--CchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCC
Q 000196 378 P--SLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQ 454 (1874)
Q Consensus 378 ~--~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~ 454 (1874)
. ...++.++..+....|+ .|.|++..+.+++..+--.+...-+..++. +...+.+.|. +..
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~---------v~~~lvkvir------pl~- 555 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALL---------VCQQLVKVIR------PLQ- 555 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHH---------HHHHHHHHhc------ccC-
Confidence 2 24566666665555565 799999998888775422222111111100 0001111110 000
Q ss_pred CCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH---HHHhhhcc--CCChHHHHHHHHHhHHh
Q 000196 455 ARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR---DSVVLYLD--DEDKATRKDAALCCCKL 529 (1874)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~---~~~~~~l~--~~~~~VR~aAa~~~~~l 529 (1874)
++ ..|+ ..||+. ++.+..+. +.+.+||..|..+++.+
T Consensus 556 --~~-------------------------------~~~d-----~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 556 --PP-------------------------------SSFD-----ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQI 597 (1233)
T ss_pred --CC-------------------------------ccCC-----CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 00 0111 123333 34444443 45789999999888888
Q ss_pred hhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcc--hhhccHhhHHH
Q 000196 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFD--DFLAQADCLSA 603 (1874)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~f~--~~L~~~~~l~~ 603 (1874)
+..... ....-+..+++.+++....|+ .|.+++.+++. .-.++ +.| .++++-
T Consensus 598 i~~fgD-----------------~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l~i~l~~~l--~~il~~ 655 (1233)
T KOG1824|consen 598 IANFGD-----------------FLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMSPLDIDLSPVL--TEILPE 655 (1233)
T ss_pred HHHHhh-----------------hhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhccceeehhhhH--HHHHHH
Confidence 764321 022335566667776655443 67777777641 11122 112 245555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 604 IFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 604 L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
+...+.......|.+....+..|.+.....+.+++-+.++.-+..+-.. .+.+.-+.|..++..++...+..+.....+
T Consensus 656 l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 656 LASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 5555554455678888888888888876666666655444444444333 466777889999999998887777777778
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC----cchhhHHHH----HHHHH
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----AAVTKREVA----VSTLG 755 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~----~~~~~r~~A----~~~Lg 755 (1874)
+++.++..++.+.. ........+..+..+.....+.+. |. .++..++.+ ........| ..+.+
T Consensus 735 iL~~ii~ll~Spll---qg~al~~~l~~f~alV~t~~~~l~-y~-----~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLL---QGGALSALLLFFQALVITKEPDLD-YI-----SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred hHHHHHHHhhCccc---cchHHHHHHHHHHHHHhcCCCCcc-HH-----HHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 88888888875421 111112222222233333223332 22 233333321 111122233 34444
Q ss_pred HHHhhccccccccccchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCC
Q 000196 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQ 834 (1874)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1874)
.++..++.+ -+.+...+..-+.+. .+..+|.-|+-.+|.+|--.+.
T Consensus 806 ~Lt~~~~~~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--------------------------- 852 (1233)
T KOG1824|consen 806 ALTCACPQK------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--------------------------- 852 (1233)
T ss_pred HHHHhcccc------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---------------------------
Confidence 444444432 234566665555433 3567787788888888721000
Q ss_pred CccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcc
Q 000196 835 PMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1874)
Q Consensus 835 ~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~ 914 (1874)
....+ |+++++ ..++.|+. +...++..|++.+ + +--++.++|.++..+.+. |.
T Consensus 853 -------------s~~~e-~~~~ii----eaf~sp~e-dvksAAs~ALGsl----~---vgnl~~yLpfil~qi~sq-pk 905 (1233)
T KOG1824|consen 853 -------------SPQNE-LKDTII----EAFNSPSE-DVKSAASYALGSL----A---VGNLPKYLPFILEQIESQ-PK 905 (1233)
T ss_pred -------------Ccchh-hHHHHH----HHcCCChH-HHHHHHHHHhhhh----h---cCchHhHHHHHHHHHhcc-hH
Confidence 00111 334444 44655542 3333444444433 2 345677888888887764 33
Q ss_pred hhHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHH
Q 000196 915 LKDYITWKLGTLVSIVR-QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI 993 (1874)
Q Consensus 915 ~~~~~~~~l~~lv~~~~-~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll 993 (1874)
.+..++..|-.++.... ..++||++.|..++........ +.+| ..+-.|++.++.. -=..++|.+-
T Consensus 906 ~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e--egtR----~vvAECLGkL~l~-------epesLlpkL~ 972 (1233)
T KOG1824|consen 906 RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE--EGTR----NVVAECLGKLVLI-------EPESLLPKLK 972 (1233)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch--hhhH----HHHHHHhhhHHhC-------ChHHHHHHHH
Confidence 34445555555544332 3468999999999988766443 1222 1334444444332 2256778777
Q ss_pred HhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc-c-ccchhHhHH
Q 000196 994 QVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV-Q-VTGHISSLV 1070 (1874)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~-~-~~~~~~~ii 1070 (1874)
..+.... +..|..+..++....+ =..-+++++...+...+.+++.+ +.+||+.|+.++...+..- + +.+.++.+.
T Consensus 973 ~~~~S~a-~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDllpeLL 1050 (1233)
T KOG1824|consen 973 LLLRSEA-SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLLPELL 1050 (1233)
T ss_pred HHhcCCC-cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHHHHHH
Confidence 7775422 2223332222111111 12235666666677777777654 7899999999998877651 1 233444444
Q ss_pred HH----------HHHHhCCC--------CHHHHHHHHHHHHHHHHHhc--cccccchhhHHHHH
Q 000196 1071 HH----------LKLVLDGK--------NDELRKDAVDALCCLAHALG--EDFTIFIPSIHKLL 1114 (1874)
Q Consensus 1071 ~~----------l~~~l~~~--------~~~l~~~al~~L~~l~~~~g--~~f~~~ip~i~~~l 1114 (1874)
+. ++|.+.-+ .-++|+.|++|+.+|..+.- .+...|+.-+...+
T Consensus 1051 p~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL 1114 (1233)
T KOG1824|consen 1051 PLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGL 1114 (1233)
T ss_pred HHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhc
Confidence 43 44444322 24799999999999998732 34445555443333
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-20 Score=224.64 Aligned_cols=584 Identities=13% Similarity=0.177 Sum_probs=391.4
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCC-ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDE-DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 483 ~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~-~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
..++..+.++..+.....+++...+ .-..++ ...+++++..+++-+...... .-..+..+.+
T Consensus 111 aq~va~IA~~ElP~n~wp~li~~lv-~nv~~~~~~~~k~~slealGyice~i~p----------------evl~~~sN~i 173 (859)
T KOG1241|consen 111 AQCVAAIACIELPQNQWPELIVTLV-SNVGEEQASMVKESSLEALGYICEDIDP----------------EVLEQQSNDI 173 (859)
T ss_pred HHHHHHHHHhhCchhhCHHHHHHHH-HhcccccchHHHHHHHHHHHHHHccCCH----------------HHHHHHHhHH
Confidence 3344445555443333334444333 333333 335888777777765431110 0133445666
Q ss_pred HHHHHHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc
Q 000196 562 VEKLLIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL 635 (1874)
Q Consensus 562 l~~Ll~~~~-~d~~~~vR~~~l~~l~~~-----~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1874)
+..++..+. .+++..||.+++.+|-.+ ..|.......-+++.+..+-+-++.+||.+|+.+|.++...+-.+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444 578999999999988421 12322111111345555566778899999999999999998866666
Q ss_pred hHHHHHHHH-HHHHHhhCCCChHhHHHHHHHHHHHHHh-------Cccccc----c----c----hHHHHHHHHHHhhc-
Q 000196 636 PALRRHLIQ-LLTYLEQSSADNKCREESAKLLGCLIRN-------CERLIR----P----Y----IAPIHKALVARLLE- 694 (1874)
Q Consensus 636 p~l~~~l~~-~l~~l~~~~~~~~~r~~a~~~L~~l~~~-------~~~~~~----p----y----~~~il~~ll~~l~~- 694 (1874)
|++.+.|.. .+..+. + ++.+..-++.+..+.+++. .++.+. | | +..+++.|+..+..
T Consensus 254 ~yM~~alfaitl~amk-s-~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq 331 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMK-S-DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ 331 (859)
T ss_pred HHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence 777664433 444454 4 4667777888887766531 122211 2 1 23566666666653
Q ss_pred -cCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc-ccccccch
Q 000196 695 -GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYP 772 (1874)
Q Consensus 695 -~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p 772 (1874)
++..+.+++..-++-.||..+|+..|+++.| .++|.+-+.++.+ ++..|++|+.++|.+..+-... ..|+. +
T Consensus 332 de~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV--~ 405 (859)
T KOG1241|consen 332 DEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV--I 405 (859)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHhcccchh---hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH--h
Confidence 2222345677778888999999999998877 6788888888876 7999999999999988765433 45543 6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 773 ~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
+.++.+++.+. +++--+|..+-+++|.+.-.-|.. ...+
T Consensus 406 qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~----------------------------------------~~n~ 444 (859)
T KOG1241|consen 406 QALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEA----------------------------------------IINQ 444 (859)
T ss_pred hhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhh----------------------------------------cccH
Confidence 78889998887 557788999999999875222210 0112
Q ss_pred chHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh----CC-----CCCCCccchhHHHHHHHhcC---CcchhHHHH
Q 000196 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM----GL-----GCVPYLPKVLPDLFHTVRTC---DDYLKDYIT 920 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~----~~-----~~~~~l~~ilp~ll~~l~~~---~~~~~~~~~ 920 (1874)
-+...++.+|+.-|.|..- .-..++-|+..+.+.. .. ..-||.+.|+..++..-... +.++|..++
T Consensus 445 ~~l~~~l~~l~~gL~DePr--va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAY 522 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLNDEPR--VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAY 522 (859)
T ss_pred hhhhHHHHHHHHHhhhCch--HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHH
Confidence 2346678889999987642 2335677777777542 11 12367788888888775542 346899999
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCC----CCCcccc---cccchhHHHHHHHHHHHhhhhhhccchhhHHHHH
Q 000196 921 WKLGTLVSIVRQHIRKYLQELFSLISELWSSF----SLPATNR---TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI 993 (1874)
Q Consensus 921 ~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~----~~~~~~~---~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll 993 (1874)
.+|+.+|....+...|-+..+...+.+.++.. -+.-++| .+++..+..++..+-..++.++.++.+.+|..++
T Consensus 523 eALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lfl 602 (859)
T KOG1241|consen 523 EALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFL 602 (859)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 99999999887777666655555554433211 0000111 1233455667777777888899999999999999
Q ss_pred HhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHH
Q 000196 994 QVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLV 1070 (1874)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii 1070 (1874)
+.|+...+..-.+.+.-.+.++. .+|..|..|+..+.|.+..-++.-..-.|..+|++.+|+|++. .++.||...++
T Consensus 603 ri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~m 682 (859)
T KOG1241|consen 603 RIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELM 682 (859)
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99976222212233444445554 4899999999999999999886555677889999999999998 56899999999
Q ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCC-----chhHHHHHHHHhcC
Q 000196 1071 HHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLR-----HKEFEEIEGRLRRR 1134 (1874)
Q Consensus 1071 ~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~-----~~~~~~~~~~~~~~ 1134 (1874)
..|+..|++++ .++|..++.++++++..+|.+|.+|+..|+..|.+.... +.....++.+|.+|
T Consensus 683 t~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~ 753 (859)
T KOG1241|consen 683 TVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREG 753 (859)
T ss_pred HHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 99999999875 689999999999999999999999999999999886511 12334455666554
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-24 Score=224.08 Aligned_cols=160 Identities=49% Similarity=0.827 Sum_probs=131.5
Q ss_pred cccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccccccc
Q 000196 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1874)
|+.||.+||+|++.|+++|++++++.+|++++|++|+|||+|||++|.+....+... ..+......+......+.
T Consensus 1 Vv~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 1 VVDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISLPMMGI 75 (160)
T ss_pred CcchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHHhhccC
Confidence 578999999999999999999999999999999999999999999986654111000 000000000111111111
Q ss_pred CCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHH
Q 000196 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKL 923 (1874)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l 923 (1874)
.++.++||+++++++|+++|+|++++++|.++++|++.||+++|.+|+||+++|+|.+++++++++++++|+++++|
T Consensus 76 ---~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 76 ---SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000196 924 GTLVSIVR 931 (1874)
Q Consensus 924 ~~lv~~~~ 931 (1874)
+.++.++|
T Consensus 153 ~~lv~ivk 160 (160)
T PF11865_consen 153 ADLVSIVK 160 (160)
T ss_pred HHHHHHhC
Confidence 99998764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-18 Score=195.88 Aligned_cols=561 Identities=12% Similarity=0.137 Sum_probs=359.2
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHH
Q 000196 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1874)
Q Consensus 486 l~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1874)
+..+..+.........++...+..-=+.....+..++..+|+......- +....+..+-++-.+
T Consensus 118 ~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~----------------Pe~li~~sN~il~ai 181 (858)
T COG5215 118 LAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA----------------PEDLIQMSNVILFAI 181 (858)
T ss_pred HHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC----------------HHHHHHHhhHHHHHH
Confidence 3344444443333444555444332222233455566777776654321 011233334444444
Q ss_pred HHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH
Q 000196 566 LIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR 639 (1874)
Q Consensus 566 l~~~~-~d~~~~vR~~~l~~l~~~-----~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~ 639 (1874)
+..+. ++++..||.+++.+|-+. ..|...-...-+++....+-+.++.+++.+|+-++.++...+-..+.|++.
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 578999999999998520 111110000113455556667788999999999999999887666667777
Q ss_pred HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC--cccc---------c------cchHHHHHHHHHHhhcc--CCCCC
Q 000196 640 RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--ERLI---------R------PYIAPIHKALVARLLEG--TGINA 700 (1874)
Q Consensus 640 ~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--~~~~---------~------py~~~il~~ll~~l~~~--~~~~~ 700 (1874)
+.|..+......+ ...+...+|.+..+.+++.- +... + .-+..+++.+++.+... +..+.
T Consensus 262 ~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 262 NALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 7777766665566 55677778888887776421 1111 1 12556888888887642 22224
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc-ccccccchHHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLL 779 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll 779 (1874)
++++.-++..|+...++..|+.+.. .++..+-+.++.. ++..|++|+.++|.+...-..+ .+|+ .|+.++.+.
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~---pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~--V~qalp~i~ 414 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMR---PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKI--VPQALPGIE 414 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHH---HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhh--HHhhhHHHH
Confidence 5666677788899999998876432 2555555666654 7899999999999988765443 3554 378888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcc-----cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccch
Q 000196 780 KMLNGELVWSTRREVLKVLGIMGA-----LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1874)
Q Consensus 780 ~~l~~~~~~~vr~~al~~lg~lga-----ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1874)
+... ++.--++..+.+|+|.+.. ++|-. +.
T Consensus 415 n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~--------------------------------------------Hl 449 (858)
T COG5215 415 NEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG--------------------------------------------HL 449 (858)
T ss_pred Hhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc--------------------------------------------cc
Confidence 8776 4456788888999988752 12211 11
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-------CCCCccchhHHHHHHHhc--CCcchhHHHHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGT 925 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-------~~~~l~~ilp~ll~~l~~--~~~~~~~~~~~~l~~ 925 (1874)
+..+- +.+..|.|..... ..+.-+.+.++.++.+. ..+|.+.|+..+++.-.. .+.+.|..+|..||+
T Consensus 450 ~~~vs-a~liGl~D~p~~~--~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 450 VLEVS-ASLIGLMDCPFRS--INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred cHHHH-HHHhhhhccchHH--hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 12222 3333344432211 12333444444443221 234555566666554332 234589999999999
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHhhcCC----C----C-CcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhc
Q 000196 926 LVSIVRQHIRKYLQELFSLISELWSSF----S----L-PATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVL 996 (1874)
Q Consensus 926 lv~~~~~~i~~y~~~i~~~i~~~~~~~----~----~-~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l 996 (1874)
++.+..+.+.+.+-.+.+.+.+.+... . + .+..-+.++..++.+++++....+.++.+--+.++.++++++
T Consensus 527 li~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~l 606 (858)
T COG5215 527 LILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRIL 606 (858)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 999887766655544444443333210 0 0 000112244567889999999999999999999999999999
Q ss_pred ccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHH
Q 000196 997 SDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHL 1073 (1874)
Q Consensus 997 ~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l 1073 (1874)
++.+.+.-..-+.-.++++. ++++.++.|+..++|.+.+.+.. ....+-..|++.+|+|++. .+|.+|...++..|
T Consensus 607 es~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~L 685 (858)
T COG5215 607 ESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSL 685 (858)
T ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 75422111111222333333 36778899999999999998843 4667889999999999997 57889999999999
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCC
Q 000196 1074 KLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1874)
Q Consensus 1074 ~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~ 1118 (1874)
...|+++. .++|.+++.++++++..+|.+|.+|+..|+-.+.+..
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99998764 5899999999999999999999999999999888753
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-13 Score=163.12 Aligned_cols=557 Identities=17% Similarity=0.206 Sum_probs=344.1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhh----cCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWL----RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l----~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~ 198 (1874)
.|+-|+...+.+++-.+.+-| ++.++++| ++.++|..||.++.+..+||.-.+-...||+..++..
T Consensus 488 ~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 488 KDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 478899999999998888743 22233333 3667899999999999999999888888999999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHH
Q 000196 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSR 278 (1874)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~ 278 (1874)
|-.+|.|.+..||-.++.|++.+++... .....-+..++.-+-.|..++.. ..--+-+.|+|.|+--+...-..|
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~----Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~y 632 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAAT----PYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASY 632 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHH
Confidence 9999999999999999999998877543 34455677777777777765531 223344446776665433333344
Q ss_pred H-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC---CCc---chHHHHHHHHHh
Q 000196 279 Y-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP---AER---DSGFIALGEMAG 350 (1874)
Q Consensus 279 ~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~---~~R---~~a~~alg~la~ 350 (1874)
| .+++-.+.+-+++++...++.++..+...|.-.+.+ +.|+ .+++|.++...... -+| ..-..+-..+|.
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 4 356767777788999999999999999988755432 2343 46667666554321 122 133444555777
Q ss_pred hchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000196 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIP 429 (1874)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p 429 (1874)
.+|. .+++..+...+.+....-+.-+.+.+..+...+|. +|..-+
T Consensus 711 KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl---------------------------- 756 (1172)
T KOG0213|consen 711 KVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL---------------------------- 756 (1172)
T ss_pred HhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH----------------------------
Confidence 7876 23333333333222111112245555555555553 332221
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC--CcchhhHHH
Q 000196 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG--HDLLEFARD 505 (1874)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~--~~l~~~v~~ 505 (1874)
.+++++-|...+..+. . ++ ..-|..+|.. .|.+ ..+.+.+..
T Consensus 757 ------eE~lidgil~Afqeqt------------------------t-~d---~vml~gfg~V~~~lg~r~kpylpqi~s 802 (1172)
T KOG0213|consen 757 ------EERLIDGILYAFQEQT------------------------T-ED---SVMLLGFGTVVNALGGRVKPYLPQICS 802 (1172)
T ss_pred ------HHHHHHHHHHHHHhcc------------------------c-ch---hhhhhhHHHHHHHHhhccccchHHHHH
Confidence 1122222211111000 0 00 0111112211 1211 122344455
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.++..+.+..+.||..|+..|+.+..-- +.| .+ ......++-| +--.+.+..++|--.++.++
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vl-ktc----------~e--e~~m~~lGvv----LyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVL-KTC----------GE--EKLMGHLGVV----LYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhc----------cH--HHHHHHhhHH----HHHhcCcccHHHHHHHHHHH
Confidence 5677889999999999999988875421 111 00 0011112222 22234667777777776666
Q ss_pred cC-------CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch-HHHHHHHHHHHHHhhCCCChH
Q 000196 586 YG-------NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP-ALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 586 ~~-------~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p-~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
.. ...+-| -.++++.|.-.|...+..|++.+++++|+++...|.++-+ .+.++...++..|+.. ...
T Consensus 866 kaI~nvigm~km~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah--kK~ 940 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH--KKE 940 (1172)
T ss_pred HHHHHhccccccCCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH--HHH
Confidence 31 111111 1357888888888999999999999999999999998763 3344555566655543 456
Q ss_pred hHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccC------------------------------CCCCChhHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGT------------------------------GINANNGIISG 707 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~------------------------------~~~~~~~v~~~ 707 (1874)
.|..|...+|.|++..++ ..++..|+..++-.. ..-++.+|..+
T Consensus 941 iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred HHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence 788888899998877652 234444444333110 00135667889
Q ss_pred HHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc---C
Q 000196 708 VLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN---G 784 (1874)
Q Consensus 708 ~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~---~ 784 (1874)
++.++.-+.+..|+.-..|+-.+.|.+.++|.|. +...|..|...+..++-+... ...-+.+-.|++++= -
T Consensus 1015 VLkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN~iWpNIl 1088 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLNLIWPNIL 1088 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999986 677899998888877654321 111234444444331 1
Q ss_pred CCCHHHHHHHHHHH
Q 000196 785 ELVWSTRREVLKVL 798 (1874)
Q Consensus 785 ~~~~~vr~~al~~l 798 (1874)
+.++.+-.+...++
T Consensus 1089 e~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1089 ETSPHVIQAFDEAM 1102 (1172)
T ss_pred CCChHHHHHHHHHH
Confidence 33566666655555
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-13 Score=157.47 Aligned_cols=725 Identities=17% Similarity=0.183 Sum_probs=414.3
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~ 190 (1874)
|...|..++.+.-|.+-+..-.++++|+.-.-+...-.||...+-.+-+++- +.+--+|..+-.++..|+..|+-
T Consensus 400 fnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli-ded~yar~egreIisnLakaaGl---- 474 (1172)
T KOG0213|consen 400 FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI-DEDYYARVEGREIISNLAKAAGL---- 474 (1172)
T ss_pred HHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee-cchHHHhhchHHHHHHHHHHhhh----
Confidence 3344444554443455566667777777654222222222221111112221 23334566777788888776552
Q ss_pred chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 191 ~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
...+..+-.-+-..++.||..++.|++.+.+.+. +..++|-+....++..+|..||.++.+...+...
T Consensus 475 --a~mistmrpDidn~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail 542 (1172)
T KOG0213|consen 475 --ATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL 542 (1172)
T ss_pred --HHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHH
Confidence 2233333334445678999999999988766544 2333443333344555699999999999999887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHH
Q 000196 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEM 348 (1874)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R--~~a~~alg~l 348 (1874)
.|--+.||+..++..+-..+.+.+.-||.....++..+|+.+..-=.+ .++.++--|-.-++..+-+ .+-+.|+|-+
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie-~fDsVlkpLwkgir~hrgk~laafLkAigyl 621 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIE-QFDSVLKPLWKGIRQHRGKELAAFLKAIGYL 621 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccChHHHHHHHHHhhc
Confidence 777888999999998888889999999999999999999765431111 2355554444444322222 2344556655
Q ss_pred Hhhchhhhhh-hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHH
Q 000196 349 AGALDGELFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITV 426 (1874)
Q Consensus 349 a~~v~~~~~p-~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~ 426 (1874)
+--...+-.- |-..+|-.+...+...+.+....++..+..+|...|-+ ..|+. +++|..|.+--...+ ++
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrm--A~----- 693 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRM--AL----- 693 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhh--hc-----
Confidence 5444443333 33456666666554333222234677777777766643 12443 566665542100000 00
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000196 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1874)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~ 506 (1874)
....+.+ .-+ .+..+| .-+|+ .+.+..+
T Consensus 694 ---------------------drr~ykq---------------------lv~-ttv~ia-~KvG~--------~~~v~R~ 721 (1172)
T KOG0213|consen 694 ---------------------DRRNYKQ---------------------LVD-TTVEIA-AKVGS--------DPIVSRV 721 (1172)
T ss_pred ---------------------cccchhh---------------------HHH-HHHHHH-HHhCc--------hHHHHHH
Confidence 0000000 000 011111 11221 1344455
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCCh--hHH----HH
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVR----HS 580 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR----~~ 580 (1874)
+.+| .++.+..|+.++.+..+++...... .+ +.....++++.++ . ++.+.+. .|. -+
T Consensus 722 v~~l-kde~e~yrkm~~etv~ri~~~lg~~----di-------derleE~lidgil----~-Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 722 VLDL-KDEPEQYRKMVAETVSRIVGRLGAA----DI-------DERLEERLIDGIL----Y-AFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred hhhh-ccccHHHHHHHHHHHHHHHhccccc----cc-------cHHHHHHHHHHHH----H-HHHhcccchhhhhhhHHH
Confidence 5554 3457788999988888877543210 00 0001233444443 3 2333222 222 24
Q ss_pred HHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----cchHHHHHHHHHHHHHhhCCCCh
Q 000196 581 IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 581 ~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
+..+|+ .+.-+|+ +.++..+...|+.+++.||+.|.+++++++...... .+.++.-+|.+.+- . ..+
T Consensus 785 V~~~lg--~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg----e-eyp 855 (1172)
T KOG0213|consen 785 VVNALG--GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG----E-EYP 855 (1172)
T ss_pred HHHHHh--hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC----c-ccH
Confidence 455554 3445666 457888888999999999999999999988754332 33444433333331 1 234
Q ss_pred HhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH--
Q 000196 657 KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL-- 733 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~-- 733 (1874)
+.-...+.+|..|....+ ....|=+..+++.|.|.+++. ...|..+.+.-+|.++..+++.+.. .+-|.+
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-----heKVqen~IdLvg~IadrgpE~v~a--REWMRIcf 928 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-----HEKVQENCIDLVGTIADRGPEYVSA--REWMRICF 928 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-----HHHHHHHHHHHHHHHHhcCcccCCH--HHHHHHHH
Confidence 433333444444444433 224555788999999999975 7788888888999999887764322 233333
Q ss_pred -HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhh
Q 000196 734 -IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRN 812 (1874)
Q Consensus 734 -l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~ 812 (1874)
+++.|.. ...+.|.+|+.+||-|++..|. .++|..|++.|+.. ....|.-+--.|+++|
T Consensus 929 eLlelLka-hkK~iRRaa~nTfG~IakaIGP--------qdVLatLlnnLkvq-eRq~RvcTtvaIaIVa---------- 988 (1172)
T KOG0213|consen 929 ELLELLKA-HKKEIRRAAVNTFGYIAKAIGP--------QDVLATLLNNLKVQ-ERQNRVCTTVAIAIVA---------- 988 (1172)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhhHHHHhcCH--------HHHHHHHHhcchHH-HHHhchhhhhhhhhhh----------
Confidence 3344443 2456889999999999988764 26899999988754 2233322212222221
Q ss_pred cccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC
Q 000196 813 QQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~ 892 (1874)
+-.-+-.|+++||.--+-|.. .++..+..|+.++|+..|..
T Consensus 989 --------------------------------------E~c~pFtVLPalmneYrtPe~-nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 989 --------------------------------------ETCGPFTVLPALMNEYRTPEA-NVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred --------------------------------------hhcCchhhhHHHHhhccCchh-HHHHhHHHHHHHHHHHHHHH
Confidence 000123567788776666654 45678999999999999988
Q ss_pred CCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000196 893 CVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1874)
Q Consensus 893 ~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1874)
...|+-.+.|.+..++.+.+...|..+...+.-++- +..---..+.++.++.-.|.+.-.+. |.....+..+++.
T Consensus 1030 skdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L--g~~g~g~eda~iHLLN~iWpNIle~s---Phviqa~~e~~eg 1104 (1172)
T KOG0213|consen 1030 SKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL--GVPGTGCEDALIHLLNLIWPNILETS---PHVIQAFDEAMEG 1104 (1172)
T ss_pred hhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc--CCCCcCcHHHHHHHHHHhhhhhcCCC---hHHHHHHHHHHHH
Confidence 889999999999999988887777665543332221 10001224566677777787643221 1122245677888
Q ss_pred HHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH
Q 000196 973 LCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV 1017 (1874)
Q Consensus 973 l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~ 1017 (1874)
+..+++.. .++..+++-|-++.+. -|....++...+..
T Consensus 1105 ~r~~Lg~~------~~~~Y~~QGLFHPark-VR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1105 LRVALGPQ------AMLKYCLQGLFHPARK-VRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHhchH------HHHHHHHHhccCcHHH-HHHHHHHHHHhHhh
Confidence 88887754 2344555555454322 24444555554443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-12 Score=172.58 Aligned_cols=718 Identities=14% Similarity=0.087 Sum_probs=379.5
Q ss_pred CCCcHHHHHHHHHHHcCC--C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHH---HHHHHHHhhhcCCChhhhhhHHHH
Q 000196 19 GGGSLDALNRILADLCTH--G-NPKEGASLALRKHIEEQARDLGGEAFSRFMD---QLYDRISGLLESNDAAENLGALRA 92 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~--~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~---~l~~~i~~l~~s~~~~~r~~~i~a 92 (1874)
..++...+..++++|++. + ++++.|+.+|+.+.+.. .+ .++++- .....+..++++.+...|.-++.+
T Consensus 8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~-----~e-nR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTR-----EE-ARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcC-----hH-HHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 355677899999999976 3 34445888888887322 22 234332 245566677888888788777777
Q ss_pred HhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC-C-cchH-HH-HHHHHHHHhhhcCC-C
Q 000196 93 IDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGG-A-MTAD-EV-EFQVKMALDWLRGD-R 165 (1874)
Q Consensus 93 i~~li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g-~-~~~~-~v-~~~~~~~~~~l~~~-~ 165 (1874)
+..|-..+ +...++- -..+.|..++. ..+.+.++.|+.+|..|+..+. . .... .+ ..-++.+++.+++. +
T Consensus 82 L~nLS~~e--~nk~~Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 82 LGVLCKEE--DLRVKVLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHHhcCH--HHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 77774332 2222221 23456666775 4589999999999999987531 1 1101 11 22345555555532 1
Q ss_pred cc-hhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHH
Q 000196 166 VE-YRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFE 242 (1874)
Q Consensus 166 ~~-~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~ 242 (1874)
.+ ..+..|+.+|..|+.+....-..-+ ...+|.+...|.++++.++..|+.++...+.. .+. .+.... ...+|
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass---~ee-~~~aVIeaGaVP 234 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMA---FES-SISKVLDAGAVK 234 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---ChH-HHHHHHHCCCHH
Confidence 12 2344567788888876543211111 24778888899999999999998887654321 111 111111 23455
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcc---------hhHHHHHHHHHhHhHhhhC
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHR---------DRLVRLSITSLLPRIAHFL 312 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~---------~~~vr~~~~~~i~~la~~~ 312 (1874)
.+..-+.+.++..++..|+.+|+.|...+.++-..-.+ ..++.++..+..+ +...++.++++++.+|.-.
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 55555644334567888888888887643321110000 1122333333322 2334556666666665321
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 313 RDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..++++|...+...++......++|.++..+.. ++.-.+.++ .+. ...+..++..+++.
T Consensus 315 ---------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l-----~d~~~~~~~-~i~------~~~v~~~LV~Llr~ 373 (2102)
T PLN03200 315 ---------SALILYLGELSESPRSPAPIADTLGALAYALMV-----FDSSAESTR-AFD------PTVIEQILVKLLKP 373 (2102)
T ss_pred ---------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh-----cCCchhhhh-hcc------ccccHHHHHHHhCC
Confidence 234444444444333322222222332211100 000000000 000 00111122222221
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 393 ~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
++-.+....+.+.|-..--++.+...+.+
T Consensus 374 --k~p~~vqe~V~eALasl~gN~~l~~~L~~------------------------------------------------- 402 (2102)
T PLN03200 374 --RDTKLVQERIIEALASLYGNAYLSRKLNH------------------------------------------------- 402 (2102)
T ss_pred --CCCchhHHHHHHHHHHhcCChHHHHHHHh-------------------------------------------------
Confidence 11000001111111000000000000000
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccccc
Q 000196 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1874)
.=....++.++...+.+++..++.++..+.......
T Consensus 403 ----------------------------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~---------------- 438 (2102)
T PLN03200 403 ----------------------------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGL---------------- 438 (2102)
T ss_pred ----------------------------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHH----------------
Confidence 000112334555556677766666665554221100
Q ss_pred chhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCc-chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 000196 553 KRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY---GNRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1874)
Q Consensus 553 ~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~f-~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1874)
...+ -...++.|+.. +..++..++..++..++ ..... -..+.....++.|..+|..++..+|+.|+++|+.++
T Consensus 439 -~~aIi~~ggIp~LV~L-L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 -WEALGGREGVQLLISL-LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred -HHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0000 01123333332 34456677766655552 11100 011223456889999999999999999999999999
Q ss_pred cCCcCccchHHH--HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHH
Q 000196 628 EKNPAYVLPALR--RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGII 705 (1874)
Q Consensus 628 ~~~p~~v~p~l~--~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~ 705 (1874)
...+ .+...+. ..+..++..+ .+ ++.+.++.|+++|..++...... .++.++..+... ++.+.
T Consensus 517 ~~~~-qir~iV~~aGAIppLV~LL-~s-gd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsd-----d~~~~ 581 (2102)
T PLN03200 517 CHSE-DIRACVESAGAVPALLWLL-KN-GGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGD-----LPESK 581 (2102)
T ss_pred CCcH-HHHHHHHHCCCHHHHHHHH-hC-CCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCC-----ChhHH
Confidence 8532 1111111 1222233333 34 57888999999999998764322 234445545443 56777
Q ss_pred HHHHHHHHHHHHhccc-chhhc---HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 706 SGVLVTVGDLARVGGF-GMRQY---ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 706 ~~~~~~l~~La~~~g~-~~~~~---~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
..++.++|.+...... ++..- ....+|.+.+.+..+ +...++.|+++|+.++.+......... .-..++-|+..
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv-~agaIpPLV~L 659 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLA-TDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHH
Confidence 7788888887664432 11111 135788999988866 567888999999999876543211111 12356666677
Q ss_pred hcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccc-hHHHHHH
Q 000196 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY-YSTVAIN 860 (1874)
Q Consensus 782 l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~vi~ 860 (1874)
|++. +.++++++.++|+.+..- .... ...+ ...-+++
T Consensus 660 Lss~-~~~v~keAA~AL~nL~~~--~~~~---------------------------------------q~~~~v~~GaV~ 697 (2102)
T PLN03200 660 LTNN-TEAVATQSARALAALSRS--IKEN---------------------------------------RKVSYAAEDAIK 697 (2102)
T ss_pred HhcC-ChHHHHHHHHHHHHHHhC--CCHH---------------------------------------HHHHHHHcCCHH
Confidence 7654 567899999998876420 0000 0000 1123466
Q ss_pred HHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 861 SLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 861 ~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
.|++.|++++. .....+..++.++++.-... ... -..++|.+...++..++..|+.+...|..+..
T Consensus 698 pL~~LL~~~d~-~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 698 PLIKLAKSSSI-EVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHhCCCh-HHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 78888887754 45567888888888754222 111 14668999999999999999999888877765
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=150.90 Aligned_cols=563 Identities=15% Similarity=0.182 Sum_probs=341.3
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~ 201 (1874)
+.|+-|+...+.++|-.+.+-| ..++.+ .++.+. .+.++|..||.++.+..+|++-.+....+|+..++..|-.
T Consensus 292 ~~deYVRnvt~ra~~vva~alg--v~~llp-fl~a~c---~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~ 365 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG--VEELLP-FLEALC---GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK 365 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC--cHHHHH-HHHHHh---cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence 3578899999999998888743 111111 112111 3567899999999999999999888888999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-chhhhHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN-TGEFMMSRYR 280 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~-~~~~~~~~~~ 280 (1874)
++.|.+..||-.++.+++.+++... ......+..++.-+-.|..++.. ..--+-+.|.|.++-. .+++.--+-.
T Consensus 366 ~l~D~~~~vRi~tA~alS~lae~~~----Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 366 LLKDRSRFVRIDTANALSYLAELVG----PYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HhhccceeeeehhHhHHHHHHHhcC----CcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHH
Confidence 9999999999999999998877644 24445566677666666654421 1233334456655542 3345545566
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcc---hHHHHHHHHHhhchh
Q 000196 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERD---SGFIALGEMAGALDG 354 (1874)
Q Consensus 281 ~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~R~---~a~~alg~la~~v~~ 354 (1874)
+.++.+++.+++++...++.+.......++....+ -..|.+++.|.+++..-. ..+|. ....+-.-+|.-+|.
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t-p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT-PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC-HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 78899999999988888877765555444443322 234568888888876532 12321 111222224444554
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1874)
+.+...+.+.+.+....-+.-+....+++...+|. .|..-
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dEr--------------------------------- 560 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDER--------------------------------- 560 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHH---------------------------------
Confidence 44555556655443211112233444444444443 23221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH-hhcccccCCCcchhhHHHHHhhhcc
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ-TLARFNFKGHDLLEFARDSVVLYLD 512 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~L~~~~f~~~~l~~~v~~~~~~~l~ 512 (1874)
..+++++.+...+..+... + ..+--++. ++.+.+|.+..+.+.+-..++..+.
T Consensus 561 -leerl~d~il~Afqeq~~t------------------------~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 561 -LEERLYDSILNAFQEQDTT------------------------V-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred -HHHHHHHHHHHHHHhcccc------------------------c-cEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 1222222222211111000 0 00000000 0112234444333434445678899
Q ss_pred CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CC
Q 000196 513 DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NR 589 (1874)
Q Consensus 513 ~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~ 589 (1874)
++.++||..|+..|+.+..- .+.| . -...++.+= .++--.+.+..++|--.++.++.. ..
T Consensus 615 ~k~p~vR~~aadl~~sl~~v-lk~c----------~-----e~~~l~klg-~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKV-LKAC----------G-----ETKELAKLG-NILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CCCccHHHHHHHHHHHHHHH-HHhc----------c-----hHHHHHHHh-HHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 99999999999998887542 2222 0 011122211 122224567778888777777631 12
Q ss_pred Ccchhh-ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch-HHHHHHHHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 590 GFDDFL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP-ALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 590 ~f~~~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p-~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
.|+..- .-..+++.|.-.|...+..|....++++|.++...|.++-+ .+.++...++..|... ..+.|..|...+|
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG 755 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATETFG 755 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhh
Confidence 333210 01246788888888899999999999999999999998764 3334455566666554 5678889999999
Q ss_pred HHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhH
Q 000196 668 CLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKR 747 (1874)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r 747 (1874)
.+.+..++ ..++..|+..++-. ....+.+...+|+..|+.+|.. .++|.++.--..+ +..+.
T Consensus 756 ~Is~aiGP------qdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP-e~nVQ 817 (975)
T COG5181 756 CISRAIGP------QDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP-EANVQ 817 (975)
T ss_pred hHHhhcCH------HHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc-hhHHH
Confidence 99998763 56788888877643 2333444455777788887753 4677776654433 45677
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
.-.+++++.+.+++|..-.-|.. .+.+.|-..|.+. ++.-|..+..++.-+
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl 868 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHL 868 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHH
Confidence 78899999999999876444432 4666666666543 566676666665443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-12 Score=163.25 Aligned_cols=589 Identities=16% Similarity=0.147 Sum_probs=345.5
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcc
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMT 146 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~ 146 (1874)
+.+.+..++.+++++.|+|+-.=+-+++...+.. ...+.+....-...++. .+|.=+-+.|++.+|-.=+.| +...
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Ls-d~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLS-DNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhc-ccHHHHHHHHhcCceEEEecCCchhH
Confidence 4455667888999999999988887777665211 12222333333334442 456666666666655332222 2233
Q ss_pred hHHHHHHHHHHHhhh-----------------------------------------------------cCCCcchhHHHH
Q 000196 147 ADEVEFQVKMALDWL-----------------------------------------------------RGDRVEYRRFAA 173 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l-----------------------------------------------------~~~~~~~~r~aA 173 (1874)
.++|+.+++.+.+.= .....|+-|.+|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~Ga 977 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGA 977 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccch
Confidence 333333333332210 123357889999
Q ss_pred HHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC
Q 000196 174 VLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1874)
Q Consensus 174 ~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~ 253 (1874)
...++.|+..+...+.||+.+++|.+..-=-||++.||.+-..--+.+.. ........++..|++++..++.+. .
T Consensus 978 AfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~----D~k~~vd~y~neIl~eLL~~lt~k-e 1052 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT----DSKKVVDEYLNEILDELLVNLTSK-E 1052 (1702)
T ss_pred hhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHHhccch-h
Confidence 99999999999999999999999999998889999999876654443322 112244578899999999999987 4
Q ss_pred hhHHHHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHhhcchhHHHHHH---HHHhHhHhhh----ChhhHHHHHHHHHH
Q 000196 254 VHSIHGSLLAVGELLRNT-GEFMMSRYREVAEIVLRYLEHRDRLVRLSI---TSLLPRIAHF----LRDRFVTNYLKICM 325 (1874)
Q Consensus 254 ~~~~~~al~~l~~ll~~~-~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~---~~~i~~la~~----~~~~f~~~yl~~~~ 325 (1874)
|++|+++++||..|+++. -+.+..++.+++.++++..++=.+.||+++ +.+++.++.- ....=.+..++.++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 999999999999999954 367888999999999999999999999986 4455544321 11111234677788
Q ss_pred HHHHHh--hcC-CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 000196 326 NHILTV--LRI-PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1874)
Q Consensus 326 ~~Ll~~--L~~-~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~ 402 (1874)
|+|+.. +.+ +..|..++.++-.++...|+.+.||++.+++.+.+....-.+ ..+.-+ +-.. ...-.
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~----~vLnYl---s~r~----~~~e~ 1201 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP----QVLNYL---SLRL----INIET 1201 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch----HHHHHH---HHhh----hhhHH
Confidence 887753 322 235889999999999999999999999999999887744321 111111 1111 01111
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCch
Q 000196 403 GLLDIMFSAG-LSTTLVDALEQITVSIP-SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480 (1874)
Q Consensus 403 ~ll~~ll~~~-ls~~l~~~l~~i~~~~p-~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1874)
+.++.+...+ -+.++.+.+.....++- ..+..+-.++.+.+. |. . +-+ ...|. ..=
T Consensus 1202 ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R----~s-V---gl~--Tkvg~------------A~f 1259 (1702)
T KOG0915|consen 1202 EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR----GS-V---GLG--TKVGC------------ASF 1259 (1702)
T ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----cc-C---CCC--cchhH------------HHH
Confidence 2333333221 22222222222211110 011122223333322 10 0 000 00000 000
Q ss_pred hHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH
Q 000196 481 PVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1874)
Q Consensus 481 ~~~~Al~~L~~~-~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1874)
...++.+...++ +|.|. +...+.+.+.+-++.||++-+.+|+.++.-.-. .....++.
T Consensus 1260 I~~L~~r~~~emtP~sgK-----ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~----------------dq~qKLie 1318 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGK-----LLRALFPGAKDRNESVRKAFASAMGYLAKFSSP----------------DQMQKLIE 1318 (1702)
T ss_pred HHHHHHHhccccCcchhH-----HHHHHhhccccccHHHHHHHHHHHHHHHhcCCh----------------HHHHHHHH
Confidence 122333433333 22221 223446778889999999999999999853210 01233444
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
.++..++. -.++...++.+.+..+.. .+.+..| ...++|.+|..++++..+....=-++|..++...-..+.=+
T Consensus 1319 ~~l~~~l~--k~es~~siscatis~Ian~s~e~Lkn~--asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~ 1394 (1702)
T KOG0915|consen 1319 TLLADLLG--KDESLKSISCATISNIANYSQEMLKNY--ASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLY 1394 (1702)
T ss_pred HHHHHHhc--cCCCccchhHHHHHHHHHhhHHHHHhh--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 44433331 112222555555443431 0112221 24589999999998765555555566766665543333225
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc-cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
+...+........++ .....|.+++..+-.++......+. |++-.+...+...+..+. .+=.+..+.++....
T Consensus 1395 ~~eiLn~iceni~nn-~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi-----wdGKe~iLKAl~~~~ 1468 (1702)
T KOG0915|consen 1395 LLEILNLICENITNN-ESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI-----WDGKEEILKALASAF 1468 (1702)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc-----cccHHHHHHHHHHHH
Confidence 555555555545555 4578888999998888877665554 777777777777776552 222344555666555
Q ss_pred HhcccchhhcHH
Q 000196 717 RVGGFGMRQYIS 728 (1874)
Q Consensus 717 ~~~g~~~~~~~~ 728 (1874)
..++..+....+
T Consensus 1469 ~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1469 EAGLADVKRNMS 1480 (1702)
T ss_pred HHhHHHHHHhch
Confidence 555554444444
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-12 Score=171.01 Aligned_cols=784 Identities=16% Similarity=0.138 Sum_probs=422.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHH
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDA 198 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p--~~~~~~l~~il~~ 198 (1874)
..+..+.|...+-.+++.+... -.++ ...++.++..|.++ +...|.-|+.++..++.... ..+. ....+|.
T Consensus 28 s~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~nk~~Iv--~~GaIpp 103 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEEDLRVKVL--LGGCIPP 103 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHHHHHHHH--HcCChHH
Confidence 3566666677776776653211 1111 11355555566543 34566666677778876521 1111 2567777
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCCChh--HHHHHHHHHHHHHHcchhh
Q 000196 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAPVH--SIHGSLLAVGELLRNTGEF 274 (1874)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~~~~--~~~~al~~l~~ll~~~~~~ 274 (1874)
++..|++-++..|++|+.||..+...-. .+ ..+... -....|.+..-+.+.+..+ .+..++.+|..|....+.+
T Consensus 104 LV~LL~sGs~eaKe~AA~AL~sLS~~~~-~D-~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~ 181 (2102)
T PLN03200 104 LLSLLKSGSAEAQKAAAEAIYAVSSGGL-SD-HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181 (2102)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHcCcc-hh-hhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch
Confidence 8888888899999999999987654211 01 011111 1233444444444432112 2344456777776644332
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC---CcchHHHHHHHHH
Q 000196 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA---ERDSGFIALGEMA 349 (1874)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~---~R~~a~~alg~la 349 (1874)
-..-.+ ..++.++.++++.++.++..++.++..++...++. .+.-. ...+|.|...|++.. .|..|..+|++|+
T Consensus 182 ~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA 260 (2102)
T PLN03200 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALS 260 (2102)
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHh
Confidence 222111 25667788888999999999999998888664431 11112 356888888887532 4788999999998
Q ss_pred hhchhhhhhhh--HHHHHHHHHhhcCCCCC---------CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHH
Q 000196 350 GALDGELFHYL--PTITSHLREAIAPRRGK---------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418 (1874)
Q Consensus 350 ~~v~~~~~p~l--~~i~~~l~~~L~~~~~~---------~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~ 418 (1874)
....+ ....+ ...++.+.+.+...... .+..+.-+++.|+... +.+.|++..++.. +.....+.
T Consensus 261 s~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-~~ll~~L~~ll~s---~rd~~~~a 335 (2102)
T PLN03200 261 SQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-SALILYLGELSES---PRSPAPIA 335 (2102)
T ss_pred cCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-hhhHHHHHHhhcc---cchHHHHH
Confidence 64322 11111 11233344334221111 1235666666666432 1233333222210 00000000
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCc
Q 000196 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHD 498 (1874)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~ 498 (1874)
++...++ .++.. +.+. +. ...+ +...
T Consensus 336 da~gALa------------yll~l----~d~~---------------------------~~--~~~~--------i~~~- 361 (2102)
T PLN03200 336 DTLGALA------------YALMV----FDSS---------------------------AE--STRA--------FDPT- 361 (2102)
T ss_pred HHHhhHH------------HHHHh----cCCc---------------------------hh--hhhh--------cccc-
Confidence 1000000 00000 0000 00 0000 0000
Q ss_pred chhhHHHHHhhhccCCChHH-HHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhH
Q 000196 499 LLEFARDSVVLYLDDEDKAT-RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTV 577 (1874)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~V-R~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~v 577 (1874)
-+...+..++.+.++.. ...++.++..++.+ +..
T Consensus 362 ---~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN------------------------------------------~~l 396 (2102)
T PLN03200 362 ---VIEQILVKLLKPRDTKLVQERIIEALASLYGN------------------------------------------AYL 396 (2102)
T ss_pred ---ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC------------------------------------------hHH
Confidence 01112223333332221 21222222222110 000
Q ss_pred HHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChH
Q 000196 578 RHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 578 R~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
-..+...+.++.|+..+.-.+.++|..++..|..++..++....-....-..+.|-.+..+ ++..
T Consensus 397 --------------~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~s~~ 461 (2102)
T PLN03200 397 --------------SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-SSEQ 461 (2102)
T ss_pred --------------HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-CCHH
Confidence 0111122446667777777778899999999988887765432111111112222222233 4677
Q ss_pred hHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLI 734 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l 734 (1874)
.++.|++.|+.++....+.....++ ..++.|+..++.+ +..++..++.+|+.++.. .++....+. ..+|.+
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-----~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-----SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHH
Confidence 8889999999998654332221111 3566777777654 678889999999998863 344555552 578899
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcc
Q 000196 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 735 ~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
++.|.+. +...++.|+++|..++..... ..++.+..+|.++ ++.++..+++++|.+..+-.......+
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~d~---------~~I~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~d~~~~- 603 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTADA---------ATISQLTALLLGD-LPESKVHVLDVLGHVLSVASLEDLVRE- 603 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhccch---------hHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchhHHHHH-
Confidence 9999876 578889999999998765322 2345566667554 567888889988876432211100000
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~- 893 (1874)
. .. ..-.++.|..+|+.++. ..+..++.++.+++..-...+
T Consensus 604 --------------------g--------------~~---~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 604 --------------------G--------------SA---ANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred --------------------h--------------hh---ccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHH
Confidence 0 00 01246778888887754 455677788888876322211
Q ss_pred CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh-HHHhHH-HHHHHHHHhhcCCCCCcccccccchhHHHHHH
Q 000196 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH-IRKYLQ-ELFSLISELWSSFSLPATNRTYRGLPVLHLVQ 971 (1874)
Q Consensus 894 ~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~-i~~y~~-~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~ 971 (1874)
.--....+|.++..++..+...+..+.++|+.+.....+. ...++. ..++.+.+.+...+. .....++.+++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~------~v~e~Al~ALa 719 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI------EVAEQAVCALA 719 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh------HHHHHHHHHHH
Confidence 1233578999999999988888888889988888643322 222232 244445555554331 11225566666
Q ss_pred HHHHHhh--hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhc---chhhhhhh--hHHHHHHhhcCC-CcH
Q 000196 972 QLCLALN--DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGG---TLDEHMHL--LLPALIRLFKVD-APV 1043 (1874)
Q Consensus 972 ~l~~~l~--~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~---~~~~~~~~--ilp~l~~~~~~~-~~~ 1043 (1874)
.++..-+ .++.. ...+|.+.+++++.. ...+..+..++..+..-++ .+.++++. .+.+++.++... ...
T Consensus 720 nLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 720 NLLSDPEVAAEALA--EDIILPLTRVLREGT-LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHcCchHHHHHHh--cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 6654332 23333 355789999997643 2234444444444432221 23344443 578888888653 222
Q ss_pred HHHHHHHHHHHhhccc---cccc--ch-----hHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000196 1044 DIRRAAIETLTRLIPR---VQVT--GH-----ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1044 ~vr~~ai~~l~~l~~~---~~~~--~~-----~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~ 1098 (1874)
..-..|++.++.+++. .++. ++ .+.=+.+|++.+..+++++.+.|+++|..++.-
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 2334588888888874 2221 12 123366788888888899999999999998854
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=151.73 Aligned_cols=682 Identities=17% Similarity=0.155 Sum_probs=389.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc
Q 000196 125 REILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR 204 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~ 204 (1874)
.+-+....++++++.-.-+...-.||...+-.+-+++- +.+-.+|-.+-.++..|+..|+--+ ++..+-.-+.
T Consensus 219 Dqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~plli-ded~~~r~~g~eii~nL~~~~Gl~~------~vs~mrpDi~ 291 (975)
T COG5181 219 DQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLI-DEDLKRRCMGREIILNLVYRCGLGF------SVSSMRPDIT 291 (975)
T ss_pred hhhhHhHHHHHHHHHHhcccccccceeeEEEEeecccc-CccHHHhcccHHHHHHHHHHhccce------eeeeccCCcc
Confidence 34455566677776654333333333332222222221 2222345555566666766655321 1111223344
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 000196 205 DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE 284 (1874)
Q Consensus 205 D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~ 284 (1874)
..++.||..+..|.+.+.+.+. ..-+..+++.++ .+..+|+.||.++.+...+....|.-..+|+..++.
T Consensus 292 ~~deYVRnvt~ra~~vva~alg-------v~~llpfl~a~c---~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG-------VEELLPFLEALC---GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC-------cHHHHHHHHHHh---cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 6678999999999988766544 122334444444 344469999999999999888777778889999999
Q ss_pred HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch----HHHHHHHHHhhchhhh-hhh
Q 000196 285 IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS----GFIALGEMAGALDGEL-FHY 359 (1874)
Q Consensus 285 ~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~----a~~alg~la~~v~~~~-~p~ 359 (1874)
.+-..+.+++..||-.+.+++..+|+....-=.+ .++.++-.|-.-.+. .|+. -+.|+|.+.--...+- .-|
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie-~fd~vl~pLw~g~~~--hrgk~l~sfLkA~g~iiplm~peYa~h~ 438 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELVGPYGIE-QFDEVLCPLWEGASQ--HRGKELVSFLKAMGFIIPLMSPEYACHD 438 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh--cCCchHHHHHHHhccccccCChHhhhhh
Confidence 8888889999999999999999999765431111 234444333333322 2333 2333333332222221 223
Q ss_pred hHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHH
Q 000196 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDR 438 (1874)
Q Consensus 360 l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l-~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ 438 (1874)
-...|+.+...+...+.+. ...+..+-.+|.++|.+-..++ .++.|.+|++- ...+
T Consensus 439 tre~m~iv~ref~spdeem-kk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f----------------------w~rr 495 (975)
T COG5181 439 TREHMEIVFREFKSPDEEM-KKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF----------------------WRRR 495 (975)
T ss_pred HHHHHHHHHHHhCCchhhc-chhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH----------------------HHhh
Confidence 4567888888775443221 2455566677888887544444 45666655420 0000
Q ss_pred HHHHHHHHhcCCC--CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCCh
Q 000196 439 LLDCISFVLSKSH--YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDK 516 (1874)
Q Consensus 439 ll~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~ 516 (1874)
. .|+. +.+ . ...+..+| +++|+ +++-+-++.++.|+.+
T Consensus 496 ~--------A~dr~~~k~---------------------v-~~ttvilA-k~~g~---------~~v~~kil~~~~De~e 535 (975)
T COG5181 496 S--------AGDRRSYKQ---------------------V-VLTTVILA-KMGGD---------PRVSRKILEYYSDEPE 535 (975)
T ss_pred h--------cccccccce---------------------e-ehhHHHHH-HHcCC---------hHHHHHHHhhccCCcc
Confidence 0 0100 000 0 00011112 22221 5566667788888888
Q ss_pred HHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHH------HHHHhccCCCC
Q 000196 517 ATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH------SIFSSLYGNRG 590 (1874)
Q Consensus 517 ~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~------~~l~~l~~~~~ 590 (1874)
..|+.+|.+..+.+...... .+. .....++++.+ +. ++.+.+..+.. +++.++. -+
T Consensus 536 p~r~m~a~~vsri~~~lg~~----~~d-------Erleerl~d~i----l~-Afqeq~~t~~~il~~f~tv~vsl~--~r 597 (975)
T COG5181 536 PYRKMNAGLVSRIFSRLGRL----GFD-------ERLEERLYDSI----LN-AFQEQDTTVGLILPCFSTVLVSLE--FR 597 (975)
T ss_pred hhhhhhhHHHHHHHHhcccc----ccc-------HHHHHHHHHHH----HH-HHHhccccccEEEecccceeeehh--hc
Confidence 99999888877776533210 010 00122333333 32 34443333211 1222221 12
Q ss_pred cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHH
Q 000196 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1874)
Q Consensus 591 f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1874)
..+|+ +.++..++..|+.+.+.||+.|.++.|.|+....+. .+.++..+|.+.+ .. ..++.-...+.++
T Consensus 598 ~kp~l--~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l----ge-~ypEvLgsil~Ai 670 (975)
T COG5181 598 GKPHL--SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL----GE-DYPEVLGSILKAI 670 (975)
T ss_pred cCcch--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc----Cc-ccHHHHHHHHHHH
Confidence 23455 357888889999999999999999998877643321 1222332222222 11 2344333334444
Q ss_pred HHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchh--hcHHhHHHHHHHHHhcCcc
Q 000196 667 GCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR--QYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 667 ~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~--~~~~~llp~l~~~l~d~~~ 743 (1874)
..+..... +.++|=+..|++.+.|.+++. ...|..+-+.-+|.++..+++.+. .++.-.+ -+++.|... +
T Consensus 671 ~~I~sv~~~~~mqpPi~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~-n 743 (975)
T COG5181 671 CSIYSVHRFRSMQPPISGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSW-N 743 (975)
T ss_pred HHHhhhhcccccCCchhhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHh-h
Confidence 44444332 457788899999999999975 667777777788888887776432 2222222 234455533 5
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1874)
.+.|.+|..++|.|.+..|. .+++..|++.|+.. ....|.-+--.+|++|-.
T Consensus 744 KeiRR~A~~tfG~Is~aiGP--------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~------------------- 795 (975)
T COG5181 744 KEIRRNATETFGCISRAIGP--------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY------------------- 795 (975)
T ss_pred HHHHHhhhhhhhhHHhhcCH--------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh-------------------
Confidence 67899999999999888764 26899999988754 233443332333333210
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHH
Q 000196 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPD 903 (1874)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ 903 (1874)
.-+-.|+++||.--..|.. .++..+..|++.+|+..|.....|+-.|.|.
T Consensus 796 -----------------------------cgpfsVlP~lm~dY~TPe~-nVQnGvLkam~fmFeyig~~s~dYvy~itPl 845 (975)
T COG5181 796 -----------------------------CGPFSVLPTLMSDYETPEA-NVQNGVLKAMCFMFEYIGQASLDYVYSITPL 845 (975)
T ss_pred -----------------------------cCchhhHHHHHhcccCchh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0012455666655544542 4567899999999999999888999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh-hh
Q 000196 904 LFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE-FR 982 (1874)
Q Consensus 904 ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~-f~ 982 (1874)
+-.++.+.++..|..+...+.-++-.. --.-..+..+.++.-.|.+.-.+.+ .....+...+++++.+++.. |-
T Consensus 846 leDAltDrD~vhRqta~nvI~Hl~Lnc--~gtg~eda~IHLlNllwpNIle~sP---hvi~~~~Eg~e~~~~~lg~g~~m 920 (975)
T COG5181 846 LEDALTDRDPVHRQTAMNVIRHLVLNC--PGTGDEDAAIHLLNLLWPNILEPSP---HVIQSFDEGMESFATVLGSGAMM 920 (975)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhhhhccCCCc---HHHHHHHHHHHHHHHHhccHHHH
Confidence 999999888877776654333332111 0012345566677777876532221 11225677888899998865 44
Q ss_pred cc
Q 000196 983 TH 984 (1874)
Q Consensus 983 ~y 984 (1874)
.|
T Consensus 921 ~Y 922 (975)
T COG5181 921 KY 922 (975)
T ss_pred HH
Confidence 44
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-10 Score=147.48 Aligned_cols=443 Identities=15% Similarity=0.204 Sum_probs=294.6
Q ss_pred chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 592 ~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
.||+ ..++|-|+..--|++..||.+...+|+.|.......+-.|+.+++.+++..+.+ ..+|.||.+|.+|.++++
T Consensus 993 ~p~l--~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 993 EPYL--KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--KEWRVREASCLALADLLQ 1068 (1702)
T ss_pred hhHH--HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHc
Confidence 3454 357888888889999999999999999999876666778888888888888765 579999999999999998
Q ss_pred hCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHH---HHHHHHHHHhc-----ccchhhcHHhHHHHHHHHHhcCc
Q 000196 672 NCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGV---LVTVGDLARVG-----GFGMRQYISELMPLIVEALLDGA 742 (1874)
Q Consensus 672 ~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~---~~~l~~La~~~-----g~~~~~~~~~llp~l~~~l~d~~ 742 (1874)
.-+ +.+...++.+...+...+.|- ..+|+.++ +.+++.+.... |..-...++.++|.+++-=--..
T Consensus 1069 g~~~~~~~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~ 1143 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSK 1143 (1702)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccc
Confidence 754 345555666666666665553 45565443 45555544322 34456677778887776211123
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcccCccchhhhcccCCCccc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGE 821 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~-lgaldp~~~~~~~~~~~~~~~ 821 (1874)
-.++|..++.++-.++.+.|..+.||. |.|++.|++....-++..+-.-++++.++ ..|+|..+-.
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s----------- 1210 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS----------- 1210 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh-----------
Confidence 467999999999999999999999985 89999999998655566677777777554 2333322100
Q ss_pred ccccCCCCCCC-CCCccccccccCCCCCCCccchHHHHHHHHHHHccCC-CchhhHHHHHHHHHHHHHHhCCCCCCCccc
Q 000196 822 VTRAASDSGQH-IQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899 (1874)
Q Consensus 822 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~-s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ 899 (1874)
.....| ++.++... +..+.....-.++-+.+.++.. .+. ....+...+..+...+|.+.-||.++
T Consensus 1211 -----~aksspmmeTi~~ci-------~~iD~~vLeelip~l~el~R~sVgl~-Tkvg~A~fI~~L~~r~~~emtP~sgK 1277 (1702)
T KOG0915|consen 1211 -----AAKSSPMMETINKCI-------NYIDISVLEELIPRLTELVRGSVGLG-TKVGCASFISLLVQRLGSEMTPYSGK 1277 (1702)
T ss_pred -----hhcCCcHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHhccCCCC-cchhHHHHHHHHHHHhccccCcchhH
Confidence 000001 01111100 0011111122334444444432 121 12356677777888899999999999
Q ss_pred hhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh
Q 000196 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN 978 (1874)
Q Consensus 900 ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~ 978 (1874)
++..++..+++.+++.+..+..++|-++....+ .+..++... +..++...+.+ +. ....++..|+.-..
T Consensus 1278 ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~---l~~~l~k~es~------~s-iscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETL---LADLLGKDESL------KS-ISCATISNIANYSQ 1347 (1702)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHhccCCCc------cc-hhHHHHHHHHHhhH
Confidence 999999999998888888888888888876554 455555444 44455544311 12 44555555888999
Q ss_pred hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh-hhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000196 979 DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE-HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 979 ~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~-~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~ 1057 (1874)
+.++.|...++|++.=...+.++ ...+.-.++.+.++..|...-. |...++-.+|.-+..+.+..+|..+...+..++
T Consensus 1348 e~Lkn~asaILPLiFLa~~ee~K-a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1348 EMLKNYASAILPLIFLAMHEEEK-ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 99999999999988655533211 1123334566666655544333 666677777766666678999999999999998
Q ss_pred cccc---ccchhHhHHHHHHHHhCCC
Q 000196 1058 PRVQ---VTGHISSLVHHLKLVLDGK 1080 (1874)
Q Consensus 1058 ~~~~---~~~~~~~ii~~l~~~l~~~ 1080 (1874)
.+.. ..|++-.+...+...+++.
T Consensus 1427 ~~~sss~~~p~ilkl~~~ll~~L~GR 1452 (1702)
T KOG0915|consen 1427 EGLSSSAPIPVILKLALSLLDTLNGR 1452 (1702)
T ss_pred ccccccCChHHHHHHHHHHHHHhhcc
Confidence 8733 2356777777777777654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-12 Score=148.70 Aligned_cols=368 Identities=15% Similarity=0.144 Sum_probs=260.3
Q ss_pred HHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh
Q 000196 28 RILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENAS 106 (1874)
Q Consensus 28 ~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~ 106 (1874)
.+.++|.++..++|+ ||.||.+.|++...+-.-++..+.+.++.. +.+.+++.+.|.||+.|+.+..-..+.+..+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 366788888888887 899999999988888777778887776665 7888999999999999999984333233444
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCc------------------------chHHHHHHHHHH----
Q 000196 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAM------------------------TADEVEFQVKMA---- 157 (1874)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~------------------------~~~~v~~~~~~~---- 157 (1874)
.+.+..+-+..+|. +.|..|+-.|++.+..+++.. |.. .+++.+.+++..
T Consensus 81 Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 66666666667774 578999999999999888863 222 111111111111
Q ss_pred ---------HhhhcC---CCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 158 ---------LDWLRG---DRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 158 ---------~~~l~~---~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
++.|.+ ..+...|..-+.-|. +....|. -|..|++.+++.+++.|.|+++.||.-+-.++++++..
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 111110 112223333222222 2334555 68899999999999999999999999999999999988
Q ss_pred HhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhH-HHHHHHH
Q 000196 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRL-VRLSITS 303 (1874)
Q Consensus 225 i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~-vr~~~~~ 303 (1874)
|....... -+..+.+.+...+.++. .+.+.-|+..+.+++...|..+.+++..++..++.+..+.++. ++..+..
T Consensus 239 I~s~P~s~---d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 239 IRSSPSSM---DYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HhcCcccc---CcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 77422111 24556666777777774 6778888999999999999989999999999999998877664 6655433
Q ss_pred HhHhHhh-----hChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC
Q 000196 304 LLPRIAH-----FLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG 376 (1874)
Q Consensus 304 ~i~~la~-----~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~ 376 (1874)
.-+.+-. ..++++ -+..++..+...+.+.. .|..++..+..+-...+.++..+.++|.+.+...|.+.++
T Consensus 315 ~n~~l~~l~s~~~~~~~i---d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEEI---DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHhhhhhcccc---chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh
Confidence 3332221 112221 23688888888887654 5889999999999999999999999999999999987765
Q ss_pred CCCchhHHHHHHHHHHhCC-CchHHHHHHHHH
Q 000196 377 KPSLEALACVGNIARAMGP-VMEPHVRGLLDI 407 (1874)
Q Consensus 377 ~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ 407 (1874)
.+-..++..++.+|..-.. ...+++.++++.
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 5444566666666665443 466777777764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-12 Score=149.35 Aligned_cols=375 Identities=15% Similarity=0.150 Sum_probs=249.7
Q ss_pred ccccccCCCCC-CCCCCcHHHHHHHHHHHcCC-C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-C
Q 000196 6 QSLRYIGPPAP-GAGGGSLDALNRILADLCTH-G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-N 81 (1874)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~s~-~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~ 81 (1874)
+..--|+||.. -.++.+.+.+...+..+.+. . .++.+|+.++..+|....-+.-.+ .. +...+.+.+.. .
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~----~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 114 RAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG----FLDNLSKAIIDKK 187 (569)
T ss_pred HHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh----HHHHHHHHhcccc
Confidence 34456999998 66777777666666666543 2 466679999999985554433222 12 33334444544 4
Q ss_pred ChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhh
Q 000196 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDW 160 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~ 160 (1874)
....|.++..|+..+....+....+.+..+.+.+...+ .+.+..|+..|..+...+... .......++++.+....+
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~- 265 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE- 265 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-
Confidence 45566689999999977653222334444444444444 245688999888888887764 222233454544444433
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 000196 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240 (1874)
Q Consensus 161 l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i 240 (1874)
. .|+.+.+++..++.+++++|.++.-++++++|.+...|.|.++.||+++.+++..+.+++.+.+ ...+
T Consensus 266 ---~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-------I~~~ 334 (569)
T KOG1242|consen 266 ---A-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-------IQKI 334 (569)
T ss_pred ---H-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-------HHHH
Confidence 3 7899999999999999999999999999999999999999999999999999999988776433 6788
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC--hhhHHH
Q 000196 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL--RDRFVT 318 (1874)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~--~~~f~~ 318 (1874)
+|.+.+++.++. ..+. .++..|+.--. -...-.|-+.-+++.|-+.++.++..+++.++.+++.++..- +.. +.
T Consensus 335 ip~Lld~l~dp~-~~~~-e~~~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~-la 410 (569)
T KOG1242|consen 335 IPTLLDALADPS-CYTP-ECLDSLGATTF-VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD-LA 410 (569)
T ss_pred HHHHHHHhcCcc-cchH-HHHHhhcceee-eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH-Hh
Confidence 899999998874 2222 22222221100 011122556666777778888999999999999999998755 433 45
Q ss_pred HHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC-CchhHHHHHHHHHHhCC
Q 000196 319 NYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP-SLEALACVGNIARAMGP 395 (1874)
Q Consensus 319 ~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~-~~~a~~~l~~l~~~~g~ 395 (1874)
.|++.++|.+...+..+ ..|..+..++|.+-+.+|.. +.++..+.+.+.+....... +..+.+.++.+...+|.
T Consensus 411 pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v 487 (569)
T KOG1242|consen 411 PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV 487 (569)
T ss_pred hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc
Confidence 69999999999888764 46999999999999999874 23566666666654332222 22344455554444442
Q ss_pred CchHHHHHHHHHHH
Q 000196 396 VMEPHVRGLLDIMF 409 (1874)
Q Consensus 396 ~~~p~l~~ll~~ll 409 (1874)
.++...++.++
T Consensus 488 ---~~~~~~~~~~~ 498 (569)
T KOG1242|consen 488 ---EKVEDILPEIL 498 (569)
T ss_pred ---hHHHHHHHHHH
Confidence 34444444443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-10 Score=138.97 Aligned_cols=316 Identities=18% Similarity=0.202 Sum_probs=222.9
Q ss_pred cHHHHHHHHHHHcCCCCchhhH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000196 22 SLDALNRILADLCTHGNPKEGA-SLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~~a-a~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
.-..+.+++..|.+++...++| +..|...+... ...+++.+ ...+.+++++....+|.|+..++..++...
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~-~~~~~~~~-------l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLS-KGLSGEYV-------LELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHh-hccCHHHH-------HHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 3457888899998887666654 33344443222 23333322 334456777888899999999999888664
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000196 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1874)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~l 180 (1874)
.... ..+... +......+++.+...+|.++..+....
T Consensus 166 ~i~~-----------------~~~~~~--------------------------l~~l~~ai~dk~~~~~re~~~~a~~~~ 202 (569)
T KOG1242|consen 166 GIES-----------------LKEFGF--------------------------LDNLSKAIIDKKSALNREAALLAFEAA 202 (569)
T ss_pred HHhh-----------------hhhhhH--------------------------HHHHHHHhcccchhhcHHHHHHHHHHH
Confidence 2210 000111 111112222333334556888888888
Q ss_pred HhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHH
Q 000196 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGS 260 (1874)
Q Consensus 181 a~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~a 260 (1874)
..+.+..+.||+..++|.|+..+.|..+.||+||.+|..+++..+.. +-.+.+++.++.++... .|+.+.++
T Consensus 203 ~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-------~aVK~llpsll~~l~~~-kWrtK~as 274 (569)
T KOG1242|consen 203 QGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-------YAVKLLLPSLLGSLLEA-KWRTKMAS 274 (569)
T ss_pred HHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-------chhhHhhhhhHHHHHHH-hhhhHHHH
Confidence 88888999999999999999999999999999999999998876552 23456677777666655 59999999
Q ss_pred HHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---------------------------
Q 000196 261 LLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--------------------------- 313 (1874)
Q Consensus 261 l~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--------------------------- 313 (1874)
+..+|.+..+.+..+...+.++.+.+-..+-+..+.||++...++-.+.....
T Consensus 275 lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~ 354 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLD 354 (569)
T ss_pred HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHH
Confidence 99999999999988888999999998888889999999998777766553221
Q ss_pred ----hhHHHH----HHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhc--hhhhhhhhHHHHHHHHHhhcCCCCCCCch
Q 000196 314 ----DRFVTN----YLKICMNHILTVLRI--PAERDSGFIALGEMAGAL--DGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1874)
Q Consensus 314 ----~~f~~~----yl~~~~~~Ll~~L~~--~~~R~~a~~alg~la~~v--~~~~~p~l~~i~~~l~~~L~~~~~~~~~~ 381 (1874)
.+|+.. -+.-++|.|..-+.. ...+..+...+|+++.-+ ..++.||++.+++.++..+.+..++++..
T Consensus 355 ~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 355 SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 123221 122223333222221 112357889999999999 45788999999999999998877777788
Q ss_pred hHHHHHHHHHHhCCC
Q 000196 382 ALACVGNIARAMGPV 396 (1874)
Q Consensus 382 a~~~l~~l~~~~g~~ 396 (1874)
+..+++.+.+..|..
T Consensus 435 aarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 435 AARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999974
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-07 Score=108.33 Aligned_cols=418 Identities=15% Similarity=0.137 Sum_probs=258.2
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
.|.++|.|.-.+=|.||+--+.......-+ .....++.++++.+...+..+.....+.|++..+.+..-+-|..-.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~---~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVN---NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence 467899999999999999888766553332 12346788888877665443222334669998888876655555556
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000196 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~ 355 (1874)
|.+.++.-++.++.+.+..||--+|..+-.+|..+..++.. |++.+...+...-... ..|+.|=..-+.+-..|-+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999888877654 7788888777765443 23444332222222222211
Q ss_pred hhh-hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHH
Q 000196 356 LFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPT 434 (1874)
Q Consensus 356 ~~p-~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~ 434 (1874)
-.. .++.+++.+++-+-..++.. ..|+-.=+.. -...|+
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~t-------------------R~flv~Wl~~-----------------Lds~P~---- 199 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMT-------------------RQFLVSWLYV-----------------LDSVPD---- 199 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHHHH-----------------HhcCCc----
Confidence 101 23445555554442211100 0011000000 000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000196 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1874)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~ 514 (1874)
+++++ ..|.+.+-+..++.|+
T Consensus 200 ---------------------------------------------------~~m~~--------yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 200 ---------------------------------------------------LEMIS--------YLPSLLDGLFNMLSDS 220 (675)
T ss_pred ---------------------------------------------------HHHHh--------cchHHHHHHHHHhcCC
Confidence 01111 1233344455677888
Q ss_pred ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh
Q 000196 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594 (1874)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~ 594 (1874)
+++||..+-.++..++ ....++|+. ++
T Consensus 221 s~eVr~~~~t~l~~fL------------------------------------~eI~s~P~s---------------~d-- 247 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFL------------------------------------AEIRSSPSS---------------MD-- 247 (675)
T ss_pred cHHHHHHHHHHHHHHH------------------------------------HHHhcCccc---------------cC--
Confidence 8899864433322222 111233321 01
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
-.+.++.+..-++.+++.++..|+.-+..+++..|..++|++.+++...+..+.++ .....++.+...=+.+.+-+.
T Consensus 248 --~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 248 --YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred --cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence 02346666667778889999999999999999999999999998887777666554 222234444333333332221
Q ss_pred c-ccc--cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHH
Q 000196 675 R-LIR--PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAV 751 (1874)
Q Consensus 675 ~-~~~--py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~ 751 (1874)
. ..+ --+.+|++++.+.+.++ ....+.+++.=+-.+-...|.++..|.+++++.++..|.|. +.++-..++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~-----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L 398 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDD-----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLAL 398 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHH
Confidence 1 111 12348999999998875 44556677777777778889999999999999999999997 566777788
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHHHhcCC
Q 000196 752 STLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE 785 (1874)
Q Consensus 752 ~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~ 785 (1874)
..++.+|...... ++-..+..|+++.+.+
T Consensus 399 ~lla~i~~s~~~~-----~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 399 SLLASICSSSNSP-----NLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHhcCcccc-----cHHHHHHHHHHHHhhh
Confidence 8888888766432 3345666667766544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-07 Score=124.44 Aligned_cols=417 Identities=16% Similarity=0.159 Sum_probs=242.0
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000196 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1874)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1874)
+.+++--. +.+..+.. +...+.+++.+++...|.-|-+++..+..... ..+.-..|.+.+=+. ++++.
T Consensus 27 l~kli~~~---~~G~~~~~----~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~-~~n~~ 94 (526)
T PF01602_consen 27 LKKLIYLM---MLGYDISF----LFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLN-SPNPY 94 (526)
T ss_dssp HHHHHHHH---HTT---GS----THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHC-SSSHH
T ss_pred HHHHHHHH---HcCCCCch----HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhc-CCCHH
Confidence 66666333 34444432 34455678889999999999999998876542 223335667777665 56889
Q ss_pred HHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCC
Q 000196 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206 (1874)
Q Consensus 127 v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~ 206 (1874)
++..|-++++.+. .++..+..++.+.+.+. ++++..|.+|++++..+....|+.+... +++.+...|.|+
T Consensus 95 ~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~ 164 (526)
T PF01602_consen 95 IRGLALRTLSNIR------TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHH-------SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred HHHHHHhhhhhhc------ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence 9999999999976 35666666776766665 4555888899999999999988876544 677888889999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChh-----------------HH--HHHHHHHHHH
Q 000196 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH-----------------SI--HGSLLAVGEL 267 (1874)
Q Consensus 207 ~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------------~~--~~al~~l~~l 267 (1874)
++.|+.+|..++..+ . ..++........++..+.+.+..+++|. .. ...+..+..+
T Consensus 165 ~~~V~~~a~~~l~~i-~----~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI-K----CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH-H----CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-c----cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 999999999988877 1 1111100233344444433333333232 11 1111122222
Q ss_pred HHcchh---------h-----hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 268 LRNTGE---------F-----MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 268 l~~~~~---------~-----~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
+...+. + -.+....++..+..++.++++.+|..++..+..++...+..+ . +... ....+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~-~~~~----~~~~l~ 313 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F-NQSL----ILFFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G-THHH----HHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h-hhhh----hhheec
Confidence 211110 0 001233445555566666666666666666666665442211 1 1011 111222
Q ss_pred CCC---CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 334 IPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 334 ~~~---~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~-~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
..+ -|..++..+..++..-. ...|++.+...+.+. +...+..++..++.++..+.+....+++.+++.+-
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANESN------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhcccccc------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 211 24555555555543221 223444445555211 22234578899999999998888889988888776
Q ss_pred hcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH
Q 000196 410 SAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487 (1874)
Q Consensus 410 ~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 487 (1874)
..+ ...+....+..+....|.....+-..+.+.+.. ..+++....++.
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~------------------------------~~~~~~~~~~~w 437 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED------------------------------ISSPEALAAAIW 437 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS------------------------------SSSHHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH------------------------------hhHHHHHHHHHh
Confidence 433 555666777788788888766666666555431 113335678999
Q ss_pred hhcccccC-CC--cchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 488 TLARFNFK-GH--DLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 488 ~L~~~~f~-~~--~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++|+|... +. ....+++.++.. ....++.||.....++.++....
T Consensus 438 ilGEy~~~~~~~~~~~~~~~~l~~~-~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 438 ILGEYGELIENTESAPDILRSLIEN-FIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHHCHHHTTTTHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHHHHS
T ss_pred hhcccCCcccccccHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhC
Confidence 99998321 11 122333333333 33345778888777787877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-06 Score=114.02 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=251.6
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcc
Q 000196 25 ALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN 104 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~ 104 (1874)
.+..|-+.|.+++..+++ ..+.+++...... +....++.++. +++.+++...|+=+-+.+..+....
T Consensus 33 e~~ELr~~L~s~~~~~kk--~alKkvIa~mt~G---~DvS~LF~dVv----k~~~S~d~elKKLvYLYL~~ya~~~---- 99 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKK--AAVKRIIANMTMG---RDVSYLFVDVV----KLAPSTDLELKKLVYLYVLSTARLQ---- 99 (746)
T ss_pred hHHHHHHHHHCCCHHHHH--HHHHHHHHHHHCC---CCchHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccC----
Confidence 345566777776543332 2266666444333 33444444444 5788889988887777777665432
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA 184 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~ 184 (1874)
+....-..|.+++=+. +.++.+|..|-++++.+-. +++++..+..+-..+ .+++.-.|.+|++++..+-...
T Consensus 100 pelalLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 100 PEKALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2222333566666554 4688999999999987643 445555544444444 3566677888888888888888
Q ss_pred CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 185 STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 185 p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
|+.+.. ..+++.+...|.|+++.|...|..+|..+... .+. .-......+..++..+.+-++|-+. .+|
T Consensus 172 pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~----~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi----~IL 240 (746)
T PTZ00429 172 MQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY----GSE-KIESSNEWVNRLVYHLPECNEWGQL----YIL 240 (746)
T ss_pred cccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh----Cch-hhHHHHHHHHHHHHHhhcCChHHHH----HHH
Confidence 876431 13444555668999999988888877766431 111 1122344455556666554456533 455
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-CCcchHHH
Q 000196 265 GELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-AERDSGFI 343 (1874)
Q Consensus 265 ~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-~~R~~a~~ 343 (1874)
+.|....+.. ......++..+...++|.|+.|--+++.++-.+..+...+..+..+..+-+-++..+.++ ..|-.++.
T Consensus 241 ~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr 319 (746)
T PTZ00429 241 ELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCK 319 (746)
T ss_pred HHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHH
Confidence 5555532211 223456888888889999999998888888777655433344444444444444444433 34667777
Q ss_pred HHHHHHhhchhhhhhhhHH------------------------------HHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 344 ALGEMAGALDGELFHYLPT------------------------------ITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 344 alg~la~~v~~~~~p~l~~------------------------------i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
.|..++..-+.-+.+++.. |+..+.++..+.+......++.++|.+|..+
T Consensus 320 ~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 320 NIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred HHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 7777766555444333321 2222223332221111246889999999877
Q ss_pred CCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 394 GPVMEPHVRGLLDIMFSAG-LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 394 g~~~~p~l~~ll~~ll~~~-ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
.......++.+++.+-... ...+....++++.+..|.. .+...+.+.+ ..
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~--~il~~L~~~~----~~----------------------- 450 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL--LMLDTLVTDY----GA----------------------- 450 (746)
T ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH--HHHHHHHHhh----cc-----------------------
Confidence 6555556666665543211 2223445666666666652 1222222110 00
Q ss_pred ccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 473 VSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++..+.+.++..+.+||+|. +-+. -..+++..+..+.+ ++..||.+...++.+++...
T Consensus 451 -~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 451 -DEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred -cccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcC
Confidence 11224445566688999983 2111 12333343333333 46789988888888888654
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-08 Score=127.24 Aligned_cols=438 Identities=17% Similarity=0.148 Sum_probs=254.9
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
+-..+.+-+.++++.+|-.|..+++.+..+ .++..+++.+ ...+.|+++.||+.++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----------------------~~~~~l~~~v-~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----------------------EMAEPLIPDV-IKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----------------------HHHHHHHHHH-HHHHHSSSHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----------------------chhhHHHHHH-HHHhcCCchHHHHHHH
Confidence 334455667889999999998888887532 2233333333 3346799999999988
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHH
Q 000196 583 SSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1874)
Q Consensus 583 ~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1874)
.++..-...++.+....+++.+..++.|+++.|+.+|+.++..+ +.+|....+.++.....+...+ .. .++-.+...
T Consensus 136 ~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~q~~i 212 (526)
T PF01602_consen 136 LALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLL-SD-PDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHH-TC-CSHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcc-cc-cchHHHHHH
Confidence 88741111123222122588888999999999999999999999 5555432233333222222222 33 455555555
Q ss_pred HHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc
Q 000196 663 AKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA 742 (1874)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~ 742 (1874)
++++..++...+..... ..+++.+.+.+... ++.|.-.++.++-.+ .+. .+.+..+++.+...+.+.
T Consensus 213 l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l---~~~--~~~~~~~~~~L~~lL~s~- 279 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKL---SPS--PELLQKAINPLIKLLSSS- 279 (526)
T ss_dssp HHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---SSS--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHh---hcc--hHHHHhhHHHHHHHhhcc-
Confidence 55555443322221100 45777777777753 566665555444433 222 126778899999999854
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEV 822 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~ 822 (1874)
+...|-.|+.+|..++......+. .+. ..+..+..+++..+|..++.++..++- +.
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~----~~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~--------------- 335 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVF----NQS---LILFFLLYDDDPSIRKKALDLLYKLAN--ES--------------- 335 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHG----THH---HHHHHHHCSSSHHHHHHHHHHHHHH----HH---------------
T ss_pred cchhehhHHHHHHHhhcccchhhh----hhh---hhhheecCCCChhHHHHHHHHHhhccc--cc---------------
Confidence 677999999999999877622221 111 223344555678999999998877641 00
Q ss_pred cccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhH
Q 000196 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902 (1874)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp 902 (1874)
-...+++.|+..+.+.+..+....++.++..+.... .+..+.++.
T Consensus 336 -------------------------------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----~~~~~~~v~ 380 (526)
T PF01602_consen 336 -------------------------------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----PPDAEWYVD 380 (526)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----GSSHHHHHH
T ss_pred -------------------------------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----CchHHHHHH
Confidence 013456667777754433446677888888887766 345677888
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000196 903 DLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1874)
Q Consensus 903 ~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1874)
.++..+....+.....+...+..++....+.- ..++..+.+....... ..++..+.++..-.++.+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~---------~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISS---------PEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSS---------HHHHHHHHHHHHHHCHHHT
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhH---------HHHHHHHHhhhcccCCccc
Confidence 88888887666666555555555543322111 2233334444433221 1345555555444444444
Q ss_pred c--cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhc-CCCcHHHHHHHHHHHHhh
Q 000196 983 T--HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFK-VDAPVDIRRAAIETLTRL 1056 (1874)
Q Consensus 983 ~--yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~~~-~~~~~~vr~~ai~~l~~l 1056 (1874)
. ..+.++..+.+.+.+. ...+...++.++..+....+ +....+++.+.+... ++.+.+||+.|...+.-+
T Consensus 448 ~~~~~~~~~~~l~~~~~~~----~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 448 NTESAPDILRSLIENFIEE----SPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp TTTHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4 5666677666666431 23456677888877654433 222345555555554 245788888887766544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=0.00015 Score=89.78 Aligned_cols=681 Identities=17% Similarity=0.223 Sum_probs=360.0
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHh-h---
Q 000196 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAE-N--- 183 (1874)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~-~--- 183 (1874)
....+||.+.+. .|+.+++.|-++|..+..-.| ..- .++..+.++ -+...|+||...++--.. +
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q~~-y~l--------~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQQN-YPL--------LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccCCC-chH--------HHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 346778888874 489999999998877654321 111 122233222 366889999999988766 2
Q ss_pred ---cCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000196 184 ---AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1874)
Q Consensus 184 ---~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 259 (1874)
.|. ....--..|...|+..+-.....|+..=.+|+. .+.+++ +- +--+.+++++...+++. |-.+..|
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~----~Ig~~D--FP-~kWptLl~dL~~~ls~~-D~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALS----LIGKRD--FP-DKWPTLLPDLVARLSSG-DFNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----HHhccc--cc-hhhHHHHHHHHhhcccc-chHHHHH
Confidence 232 233456667778888887777777666555554 455443 22 22357888888888865 3555666
Q ss_pred HHHHHHHHHHc------ch------hhhHHHHHHHHHHHHHH----hh-c-chhH-------HHHHHHHHhHhHhhhChh
Q 000196 260 SLLAVGELLRN------TG------EFMMSRYREVAEIVLRY----LE-H-RDRL-------VRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 260 al~~l~~ll~~------~~------~~~~~~~~~i~~~ll~~----~~-~-~~~~-------vr~~~~~~i~~la~~~~~ 314 (1874)
.+..-..+... +. .+...++.+-+..+++. .+ + .+.. |...++.+.-++..-+-.
T Consensus 146 VL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiP 225 (960)
T KOG1992|consen 146 VLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIP 225 (960)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccch
Confidence 55554444431 11 11222222222222221 11 1 1111 111222333333333445
Q ss_pred hHHHHHHHHHHHHHHHhhcC--C-----C--------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCC
Q 000196 315 RFVTNYLKICMNHILTVLRI--P-----A--------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~--~-----~--------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~ 379 (1874)
+|.+..++.-|+...+.|+. + + .|....+.+...+....+++.||+++++...+.-|......++
T Consensus 226 EFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k 305 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK 305 (960)
T ss_pred HHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 67777889999998888762 1 1 1456677777777778888999999999999998865544443
Q ss_pred -----chhHHHHHHHHHHhCC--Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 380 -----LEALACVGNIARAMGP--VME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 380 -----~~a~~~l~~l~~~~g~--~~~--p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
..|++++..+++.-.- -|. ..+..+.+.+.-..+ .+++...++.+ +.-++.+..-+.|
T Consensus 306 yD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~--~lR~eDeElFE----------D~pleYiRRDlEG- 372 (960)
T KOG1992|consen 306 YDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNL--ILREEDEELFE----------DNPLEYIRRDLEG- 372 (960)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccccc--ccchhhHHHhc----------cCHHHHHHHhccc-
Confidence 2467777777664211 010 111111111110000 00111111111 0011222111111
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCC---cchhhHHHHHhhhccCCChH--HHHHHH
Q 000196 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGH---DLLEFARDSVVLYLDDEDKA--TRKDAA 523 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~~---~l~~~v~~~~~~~l~~~~~~--VR~aAa 523 (1874)
+|. +.....|++.++.+ .|.+. .+..++...+..|..+|+.+ -...|.
T Consensus 373 -----------------------sDv--dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~ai 427 (960)
T KOG1992|consen 373 -----------------------SDV--DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAI 427 (960)
T ss_pred -----------------------CCc--chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhh
Confidence 111 11346788888877 46543 23345555556666666432 222233
Q ss_pred HHhHHhhhcc---CCCCcccccccccccccccchhHH----HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc
Q 000196 524 LCCCKLVANS---FSGVSFTQFGASRSNRTGGKRRRL----IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA 596 (1874)
Q Consensus 524 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~ 596 (1874)
..+..+..+. ..|+. .+. ....+ ...+++.|....+ .+.|.++..+++-.- .|-..+.
T Consensus 428 yL~talaik~~t~~~Gvt----------stn-~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~---~FR~ql~ 492 (960)
T KOG1992|consen 428 YLVTALAIKGQTAKHGVT----------STN-ELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIY---TFRNQLG 492 (960)
T ss_pred hhhHHHHhhcchhhccee----------ecc-ccccHHHHHHHHhhHHhccCcc-ccccchhhcccceee---eecccCC
Confidence 3333332221 11110 010 01222 2233333332111 233445555554331 2333333
Q ss_pred cH---hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC---------cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHH
Q 000196 597 QA---DCLSAIFAALNDEDFDVREYAISVAGRLSEKN---------PAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1874)
Q Consensus 597 ~~---~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~---------p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1874)
.+ ..++.+...+.-++..|-.-|..++.++-... |..+.|+....+.+++..+... + ...-+...+
T Consensus 493 ~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~-~~EneylmK 570 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP-G-KAENEYLMK 570 (960)
T ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-c-ccccHHHHH
Confidence 22 35677778888888888888888777754322 2234566666666666555433 2 244567788
Q ss_pred HHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc----cchhhcHHhHHHHHHHHHhc
Q 000196 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG----FGMRQYISELMPLIVEALLD 740 (1874)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g----~~~~~~~~~llp~l~~~l~d 740 (1874)
++-.++.-.++.+.||.+.++..|.+.+...+.-..+|..-...++++|.+....+ ..+..+...++|.+...|+.
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999988888766432212355555666777777665443 45678889999999998863
Q ss_pred CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhcccCccchhhhcccCC
Q 000196 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR---EVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 741 ~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~---~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
. -.+----++.-++.+++..+..+- ..|..+++.|+ ++.-|+.+- +.++++-.+---+|..
T Consensus 651 D-I~EfiPYvfQlla~lve~~~~~ip--~~~~~l~~~lL----sp~lW~r~gNipalvrLl~aflk~g~~~--------- 714 (960)
T KOG1992|consen 651 D-IQEFIPYVFQLLAVLVEHSSGTIP--DSYSPLFPPLL----SPNLWKRSGNIPALVRLLQAFLKTGSQI--------- 714 (960)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHhc----CHHHHhhcCCcHHHHHHHHHHHhcCchh---------
Confidence 2 112223567888888888876321 11223444333 333333332 2222222110000000
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-CCCC
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPY 896 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~ 896 (1874)
. .. .++ ..-++..+-+..-.++. +|| .+.-+.+|+....+. ..||
T Consensus 715 -----------~----~~---------------~~~-l~~iLGifqkLiaSka~-Dh~--GF~LLn~i~~~~~~~~~~py 760 (960)
T KOG1992|consen 715 -----------V----EA---------------ADK-LSGILGIFQKLIASKAN-DHH--GFYLLNTIIESIPPNELAPY 760 (960)
T ss_pred -----------h----cc---------------ccc-chhHHHHHHHHhcCccc-chh--HHHHHHHHHhcCCHhhhhHH
Confidence 0 00 000 02233333344434433 233 455677777776554 4689
Q ss_pred ccchhHHHHHHHhcCCc
Q 000196 897 LPKVLPDLFHTVRTCDD 913 (1874)
Q Consensus 897 l~~ilp~ll~~l~~~~~ 913 (1874)
+.+|.-.+++.++++..
T Consensus 761 ~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 761 MKQIFGLLFQRLQNSKT 777 (960)
T ss_pred HHHHHHHHHHHHhccCc
Confidence 99999999999998753
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=0.0004 Score=88.35 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=167.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---cc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---RL 676 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---~~ 676 (1874)
++.-++-.++++.--.|..|++++++++...-. -...+++.+....+.+.++ .+.-.|-+|+-+|..+++++. +.
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-d~~~l~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-DPNNLSEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhh
Confidence 345667778899889999999999999954311 1234566555556666666 667788999999999999876 45
Q ss_pred cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH----HHhc-----CcchhhH
Q 000196 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE----ALLD-----GAAVTKR 747 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~----~l~d-----~~~~~~r 747 (1874)
++|+++++|+.++...++. +.... -.++..+....++++.||..++...+.+ .+++ ..+.++.
T Consensus 541 ~~~hvp~~mq~lL~L~ne~-----End~L---t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEV-----ENDDL---TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 9999999999999998875 22222 3455667777888899988877666655 4452 1122333
Q ss_pred HHHHHHHHH---HHhhcccccccc-ccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccc
Q 000196 748 EVAVSTLGQ---VVQSTGYVITPY-NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1874)
Q Consensus 748 ~~A~~~Lg~---l~~~~~~~i~p~-~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1874)
.+|.+.|.. +..+....-..+ .-.|.+++.+..+|+++- .++-++++..+.-+....|
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~~~----------------- 674 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFLSK----------------- 674 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhc-----------------
Confidence 444333333 332222210000 012445555555555442 2344444433322111000
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC--CCCccchh
Q 000196 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VPYLPKVL 901 (1874)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~--~~~l~~il 901 (1874)
.+. -.+ .-+...++..++|+. ..+.+.+.-++-+++..-++.+ .|...+++
T Consensus 675 -----------~Is---p~m------------W~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il 727 (1010)
T KOG1991|consen 675 -----------EIS---PIM------------WGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQIL 727 (1010)
T ss_pred -----------ccC---HHH------------HHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHH
Confidence 000 001 234455556565553 2334444444444432212211 24334444
Q ss_pred HHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcC
Q 000196 902 PDLFHTVRTC---DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951 (1874)
Q Consensus 902 p~ll~~l~~~---~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~ 951 (1874)
-.++..+-++ .++=.+.+++.+..++-.++..+..|+|..+.+.......
T Consensus 728 ~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 728 LEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 4444433332 2233455777777777777777777888888877776665
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=0.00051 Score=89.18 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=129.9
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH
Q 000196 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR 935 (1874)
Q Consensus 856 ~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1874)
..+.+.|...+++-+ +......+.++-.|++.++.....++++.+|.++-..+..+...|...|..|-.+.. |.
T Consensus 696 ~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~ 769 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQ 769 (1176)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HH
Confidence 345566666554433 223456788888999988866667888888888777766666677777665433322 22
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHH---HHH
Q 000196 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVL---DIL 1012 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~---~il 1012 (1874)
.+++.. +. . ....+.+|++.|.+- +-. +. .+..+. .+-
T Consensus 770 ~~~d~g-----------~e----------~-----------~~~~lnefl~~Isag----l~g-d~--~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 770 SSLDDG-----------NE----------P-----------ASAILNEFLSIISAG----LVG-DS--TRVVASDIVAIT 810 (1176)
T ss_pred hhhccc-----------cc----------c-----------hHHHHHHHHHHHHhh----hcc-cH--HHHHHHHHHHHH
Confidence 222110 00 0 011123333333332 111 11 112222 222
Q ss_pred HHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHHhCCCCHHHHHHH
Q 000196 1013 HTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKNDELRKDA 1088 (1874)
Q Consensus 1013 ~~l~~~g~~~-~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~~~l~~~a 1088 (1874)
+.+..++..+ +++++.++..++-++..+ ..+++++|+..+..++... .+.+|.+.+++.+.+.+.+....+|..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2333455555 367778888888777654 7899999999999998873 4788999999999998887778899999
Q ss_pred HHHHHHHHHHhcccc-ccchh
Q 000196 1089 VDALCCLAHALGEDF-TIFIP 1108 (1874)
Q Consensus 1089 l~~L~~l~~~~g~~f-~~~ip 1108 (1874)
-..|-.|+...|.+. ..|.|
T Consensus 890 r~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHhCHHHHHhhCH
Confidence 999999999988653 35666
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=0.00059 Score=88.63 Aligned_cols=775 Identities=14% Similarity=0.114 Sum_probs=370.7
Q ss_pred HHHHHHHHHHhhhc--CCChhhhhhHHHHHhHhhccccCcchhH---HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh
Q 000196 66 FMDQLYDRISGLLE--SNDAAENLGALRAIDELIDVALGENASK---VSKFSNYMRTVFEVKRDREILVLASKVLGHLAR 140 (1874)
Q Consensus 66 ~~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~li~~~~~~~~~~---~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~ 140 (1874)
-+.++.+.+..+++ +.+-..+..++.+++.|+-.+.....+. .+-+...|.-.+ .+-+.+++.|..++..+..
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~ 167 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLK 167 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHc
Confidence 34444555555554 6666677778888888876542222221 111222222222 3458889999988887776
Q ss_pred hCCCcc-hHH--HHHHHHHHHhhhcCCCcchhHHH---HHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 141 AGGAMT-ADE--VEFQVKMALDWLRGDRVEYRRFA---AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 141 ~~g~~~-~~~--v~~~~~~~~~~l~~~~~~~~r~a---A~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
.+...+ +++ .-+..+.++..+.+.-.+..-.. .+.+|+.+....| .+.+..+-+.++..+...+..|+-.+
T Consensus 168 ~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p---~~li~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 168 GPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFP---RPLIKSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHhhcccchHHHHHHH
Confidence 432111 111 01122223333321111112222 3334444444444 35667788888899999999998888
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH----HcchhhhHHHHHHHHHHHHHHh
Q 000196 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL----RNTGEFMMSRYREVAEIVLRYL 290 (1874)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll----~~~~~~~~~~~~~i~~~ll~~~ 290 (1874)
..++..++. .+.+..-......++..+...--+.+|....-+=+.+++..- ...++........+....+.+.
T Consensus 245 ~q~l~~lf~---~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~ 321 (1176)
T KOG1248|consen 245 LQCLHSLFK---KHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL 321 (1176)
T ss_pred HHHHHHHHh---cCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH
Confidence 888876654 233333344556666666553323222221222222222221 1223334444555555555666
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
.+..+.+-+++.+.+..+-..+.. +.+.+-...+..+.+.+- -..+++.+..+-+.+|+...||+-..++.|
T Consensus 322 ~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l 396 (1176)
T KOG1248|consen 322 ESLIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGL 396 (1176)
T ss_pred hcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 677777666766666665543332 111111111112212221 235788888888888887678887777666
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHH---------HHH-----HHHHHHHhCCCChH
Q 000196 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTT---------LVD-----ALEQITVSIPSLLP 433 (1874)
Q Consensus 368 ~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~---------l~~-----~l~~i~~~~p~l~~ 433 (1874)
..-=...+.....+.=+|+|.-..++||.. +-.++|.=+..+ +.. +++ .|.-+.++|-++..
T Consensus 397 ~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~---vL~~lpLnl~~~-s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~ 472 (1176)
T KOG1248|consen 397 CDLRASPDFFHKLQLDQCIGSAVRAMGPER---VLTILPLNLHAE-SLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAM 472 (1176)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHhhCHHH---HHHHcchhcccc-ccccchhHhHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 532111111112356689999999999841 222233222111 111 111 01111111111111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhc--------ccccCCCcchh---h
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLA--------RFNFKGHDLLE---F 502 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~--------~~~f~~~~l~~---~ 502 (1874)
+++-+..+. . +. +. ... -+++|+ .|...+-.+.. .
T Consensus 473 sl~~K~~~l----------~---------------------~~-~~-~~~-~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~ 518 (1176)
T KOG1248|consen 473 SLQLKAKKL----------K---------------------EA-GS-QVS-LYDTLVDQLWSLLPGFCNYPVDLAESFTD 518 (1176)
T ss_pred HHHHHHHhh----------h---------------------hc-cC-cHH-HHHHHHHHHHHhChhhhCCCccHHHHHHH
Confidence 111111000 0 00 00 000 111111 11000000000 0
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
+..++...+. ..++.|..-..++.. |++....-.+..=+.+++
T Consensus 519 la~~l~~al~-~~~elr~~Ic~sL~~------------------------------------Lv~~n~~~~~a~e~~e~~ 561 (1176)
T KOG1248|consen 519 LAPILGAALL-KRPELRETICNSLRM------------------------------------LVEQNKPSSDAAENKEVL 561 (1176)
T ss_pred HHHHHHHHHh-cchHhHHHHHHHHHH------------------------------------HHHcCCCcchHHHHHHHH
Confidence 0000000000 011222111111111 111100001111111222
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCC------CCHHHHHHHHHHHH-hhhcCCcCccchHHHHHHHHHHHHHhhCCCC
Q 000196 583 SSLYGNRGFDDFLAQADCLSAIFAALND------EDFDVREYAISVAG-RLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1874)
Q Consensus 583 ~~l~~~~~f~~~L~~~~~l~~L~~~l~D------~~~~VR~~a~~~l~-~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1874)
.... ..+++.+|..-.. .....|...+.++. ...+..|..+.-.|..-+.+...... +
T Consensus 562 s~~A-----------knfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~----~ 626 (1176)
T KOG1248|consen 562 SNDA-----------KNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD----E 626 (1176)
T ss_pred hhhh-----------hHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch----h
Confidence 2111 1345555543321 23456666666665 56666666554444433332222111 1
Q ss_pred hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh--cccchhhcHHhHHHH
Q 000196 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--GGFGMRQYISELMPL 733 (1874)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--~g~~~~~~~~~llp~ 733 (1874)
.......+.+|..++...+-.-..++..+. .+.+..... .++.+..-+...|+++... +......+++.+...
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~----~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~ 701 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENS----SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNS 701 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhcc----ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 111123344444444333222222233333 333333322 3667777777788887776 223567788888888
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhc
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~ 813 (1874)
+.+.+++. +...|..++.+|..+.+.++....- -.|.+++-++=.+ ++.+...|+.++.||-.+|++..+..
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~--~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d---- 773 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCD--LIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLD---- 773 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhc----
Confidence 88888876 4557778899999998888722111 1234444444334 45578899999999988886322210
Q ss_pred ccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHH-HHHHHHHHHHhCCC
Q 000196 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKV-VGSLMFIFKSMGLG 892 (1874)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v-~~al~~i~~~~~~~ 892 (1874)
+.+.+ . ....++|. .++...+ ..|. .++.+. +-|+..|+...+..
T Consensus 774 --------------~g~e~--~-----------~~~lnefl-~~Isagl---~gd~---~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 774 --------------DGNEP--A-----------SAILNEFL-SIISAGL---VGDS---TRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred --------------ccccc--h-----------HHHHHHHH-HHHHhhh---cccH---HHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0 00111222 2222221 1222 233233 56677777765544
Q ss_pred C-CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000196 893 C-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1874)
Q Consensus 893 ~-~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1874)
. .+++++++..+-..+....+.++..+...+..++... ..++.+|+|++++.+........ +. ....+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-----~~-~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-----IK-VRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-----HH-HHHHHHHHH
Confidence 3 4788888888888888888888888888888888766 46778999999999988433222 01 122566677
Q ss_pred HHHHHHhh-hhhhccchhhHHHHHHhc
Q 000196 971 QQLCLALN-DEFRTHLPVILPCCIQVL 996 (1874)
Q Consensus 971 ~~l~~~l~-~~f~~yl~~llp~ll~~l 996 (1874)
+.++...| +++.+|+|...-.++.-+
T Consensus 894 ekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 77777666 446677775555444444
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=0.00046 Score=88.40 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=117.7
Q ss_pred hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.++..+++.++.+++|.+..||+.|+..++.... |.+ ......++..+++-+.-.++....|||+++|++|..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~----rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS----RLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc----cCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 5677888999999999999999999998886543 433 222334444444422222234678999999999976
Q ss_pred cchhhhHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhHhHhh-hChhhHHHHHHHHHHHHHHHhhcCC---CC
Q 000196 270 NTGEFMMSRYREVAEIVLRYL--------EHRDRLVRLSITSLLPRIAH-FLRDRFVTNYLKICMNHILTVLRIP---AE 337 (1874)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~--------~~~~~~vr~~~~~~i~~la~-~~~~~f~~~yl~~~~~~Ll~~L~~~---~~ 337 (1874)
- |=.+...++++++.++..+ -.....||.++|-++-+++. |.+.+ .++|+..+...|+..--.+ +-
T Consensus 410 r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 R-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-LKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred c-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-hhHHHHHHHHHHHHHHhcCchhhH
Confidence 3 2233345666666665443 12357799998877776665 55544 4557887887776543222 24
Q ss_pred cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000196 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1874)
Q Consensus 338 R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~ 410 (1874)
|.+|..|+-+....-|. .|+--+++..+- ...- ..--.|+..++..+. .|..|...+++.++.
T Consensus 488 RRAAsAAlqE~VGR~~n--~p~Gi~Lis~~d-y~sV------~~rsNcy~~l~~~ia-~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN--FPHGISLISTID-YFSV------TNRSNCYLDLCVSIA-EFSGYREPVFNHLLT 550 (1133)
T ss_pred hHHHHHHHHHHhccCCC--CCCchhhhhhcc-hhhh------hhhhhHHHHHhHHHH-hhhhHHHHHHHHHHh
Confidence 66777776664433332 244333332211 1100 011235665555442 344566666666553
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-05 Score=104.46 Aligned_cols=472 Identities=12% Similarity=0.037 Sum_probs=257.4
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHH
Q 000196 155 KMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRV 234 (1874)
Q Consensus 155 ~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~ 234 (1874)
..+-+-|.+.....+|.+--.++..+..| . -+..+++.++..+..++..+|+-..-.+..+.. ..+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--------~~p 100 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMG--R----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--------LQP 100 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--C----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------cCh
Confidence 33334444444444555555577766666 2 344677777788888999999988877665432 223
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000196 235 QWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 235 ~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~ 314 (1874)
+..-...+.+.+-+.+++ ..+|--|+..++.+- . ....+.+...+.+.+.++++.||++++-++..+-..+++
T Consensus 101 elalLaINtl~KDl~d~N-p~IRaLALRtLs~Ir---~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 101 EKALLAVNTFLQDTTNSS-PVVRALAVRTMMCIR---V---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC---c---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 334455667777777765 455555544444321 1 122333555666777899999999999999998777775
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 315 RFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
.+.+ ....+.|...|.+.+ ....|+.++-++...-+..+. ...
T Consensus 174 lv~~---~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~------------------------------- 218 (746)
T PTZ00429 174 LFYQ---QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSN------------------------------- 218 (746)
T ss_pred cccc---cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHH-------------------------------
Confidence 4321 123334444454322 345566666555433322110 001
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 393 ~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
+++..++..+-++ .+..+-.+++.+.. +. |
T Consensus 219 ------~~~~~Ll~~L~e~--------------------~EW~Qi~IL~lL~~------y~---P--------------- 248 (746)
T PTZ00429 219 ------EWVNRLVYHLPEC--------------------NEWGQLYILELLAA------QR---P--------------- 248 (746)
T ss_pred ------HHHHHHHHHhhcC--------------------ChHHHHHHHHHHHh------cC---C---------------
Confidence 1111111111000 00111112222210 10 0
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccccc
Q 000196 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1874)
+ +++ .+. .+.+.+.+.+.|.++.|.-+|++++..+..... ..
T Consensus 249 -~---~~~---e~~---------------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~----------------~~ 290 (746)
T PTZ00429 249 -S---DKE---SAE---------------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS----------------QE 290 (746)
T ss_pred -C---CcH---HHH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC----------------HH
Confidence 0 000 011 122334566777788888777777666542100 00
Q ss_pred chhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcC
Q 000196 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1874)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1874)
...+.+..+...|+.. ...++++|..++..+..-..-.+.+-++ .++..|...+|+.+ ||...+++|-.++...
T Consensus 291 ~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~-- 364 (746)
T PTZ00429 291 LIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVIFPNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPS-- 364 (746)
T ss_pred HHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcc--
Confidence 0112222222333332 4567788888887763100001222122 36666677788876 8999999999988644
Q ss_pred ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
.+ ..++.++..... + .+...+..+.+.+|.++...+. ..+.++..|+..+.+. ..+...++..+
T Consensus 365 Nv----~~IL~EL~eYa~-d-~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~------~~~v~e~i~vi 428 (746)
T PTZ00429 365 VA----PEILKELAEYAS-G-VDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR------PELLPQVVTAA 428 (746)
T ss_pred cH----HHHHHHHHHHhh-c-CCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC------chhHHHHHHHH
Confidence 22 223333333222 2 4567788999999999987754 3556677777777643 22344566777
Q ss_pred HHHHHhcccchhhcHHhHHHHHHHHH--hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHH
Q 000196 713 GDLARVGGFGMRQYISELMPLIVEAL--LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1874)
Q Consensus 713 ~~La~~~g~~~~~~~~~llp~l~~~l--~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~v 790 (1874)
..+.+..++.. +++.++..+ .+-.+.+.|.+.+|.+|..+..... .|.++..+++-+..+ +..|
T Consensus 429 k~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-------a~~~L~~~i~~f~~E-~~~V 494 (746)
T PTZ00429 429 KDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-------GKDIIQRFIDTIMEH-EQRV 494 (746)
T ss_pred HHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-------HHHHHHHHHhhhccC-CHHH
Confidence 77777655431 345555433 2234567888889999998765432 356776666655444 6789
Q ss_pred HHHHHHHHHHhcccCc
Q 000196 791 RREVLKVLGIMGALDP 806 (1874)
Q Consensus 791 r~~al~~lg~lgaldp 806 (1874)
|.+.+.+...+-...|
T Consensus 495 qlqlLta~vKlfl~~p 510 (746)
T PTZ00429 495 QLAILSAAVKMFLRDP 510 (746)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9888877776654333
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-07 Score=108.12 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=167.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.|++..||..++.+|.. + ..++.+..+..+++|+++.+|..++.+||.+...... ..+.+ ..|..
T Consensus 31 ~L~d~d~~vR~~A~~aL~~---~----~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~-~~L~~ 97 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQL---R----GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF-NILNN 97 (280)
T ss_pred HHhCCCHHHHHHHHHHHHh---c----CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH-HHHHH
Confidence 3589999999999999952 1 1245677788888999999999999999998753211 11222 22222
Q ss_pred -HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 649 -LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 649 -l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
+..+ .++.+|..|+..||.+..... .+....+..+...+.+. ++.|+..++.++|.+..
T Consensus 98 l~~~D-~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-----~~~VR~~a~~aLg~~~~---------- 157 (280)
T PRK09687 98 LALED-KSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-----STNVRFAVAFALSVIND---------- 157 (280)
T ss_pred HHhcC-CCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-----CHHHHHHHHHHHhccCC----------
Confidence 2345 678999999999999853221 12345566666777764 78899888888865421
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
+..++.++..+.|. +..+|..|+.+||.+. . ..|...+.|+..|.++ ++.||.+|+..||.+|.
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~----~------~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSNK----Y------DNPDIREAFVAMLQDK-NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----C------CCHHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC----
Confidence 45788999999987 5789999999999861 1 1357888888888654 78999999999988651
Q ss_pred chhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHH
Q 000196 808 AHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887 (1874)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~ 887 (1874)
..+++.|++.|+++.. ...++.|+ .
T Consensus 222 ------------------------------------------------~~av~~Li~~L~~~~~---~~~a~~AL----g 246 (280)
T PRK09687 222 ------------------------------------------------KRVLSVLIKELKKGTV---GDLIIEAA----G 246 (280)
T ss_pred ------------------------------------------------hhHHHHHHHHHcCCch---HHHHHHHH----H
Confidence 2356778888888753 22344333 3
Q ss_pred HhCCCCCCCccchhHHHHHHHh-cCCcchhHHH
Q 000196 888 SMGLGCVPYLPKVLPDLFHTVR-TCDDYLKDYI 919 (1874)
Q Consensus 888 ~~~~~~~~~l~~ilp~ll~~l~-~~~~~~~~~~ 919 (1874)
.+|. ++.+|.+...+. +.++.++..+
T Consensus 247 ~ig~------~~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 247 ELGD------KTLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred hcCC------HhHHHHHHHHHhhCCChhHHHHH
Confidence 4454 378888888886 4444444443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00068 Score=86.97 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchh
Q 000196 516 KATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDF 594 (1874)
Q Consensus 516 ~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~ 594 (1874)
..||.+|.-.|+.+...- + . ....+++..+...|+.+++.|++..+|+++..+|.+. .++..
T Consensus 442 ~~VRDaAcY~~WAf~Ray-s--------------~-~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n- 504 (1133)
T KOG1943|consen 442 QHVRDAACYVCWAFARAY-S--------------P-SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN- 504 (1133)
T ss_pred cchHHHHHHHHHHHHhcC-C--------------h-hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC-
Confidence 479999998888876421 1 0 1134567778888999999999999999998888420 11111
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
-|.=++. ....++-+-..|..+..-+++-...+|.+..|.++..+..- +.+. +...|+.+++.|..+....+
T Consensus 505 --~p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K---v~HW--d~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 505 --FPHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK---VCHW--DVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred --CCCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc---cccc--cHHHHHHHHHHHHHHHHhhH
Confidence 0111111 11223333345666677777777777766666655533222 3444 56778888888888877776
Q ss_pred cccc-cchHHHHH
Q 000196 675 RLIR-PYIAPIHK 686 (1874)
Q Consensus 675 ~~~~-py~~~il~ 686 (1874)
+.+. -|++++++
T Consensus 577 k~~a~~~L~~lld 589 (1133)
T KOG1943|consen 577 KYLADYVLPPLLD 589 (1133)
T ss_pred Hhhcccchhhhhh
Confidence 6655 33444444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-07 Score=107.41 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=145.3
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 482 ~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
...|+..|+.+. + +-+...+..++.++++.+|..|+.+++.+-.... ....+
T Consensus 40 R~~A~~aL~~~~--~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~----------------------~~~~a 91 (280)
T PRK09687 40 RISSIRVLQLRG--G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR----------------------CQDNV 91 (280)
T ss_pred HHHHHHHHHhcC--c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------------------chHHH
Confidence 345666666552 1 1233344456677788888888888777632110 01233
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
++.|......|+++.||..++.+|+.... ......+..+..+..++.|++..||..++..||.+.. +. .
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~-~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~~--------a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCK-KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--EA--------A 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--HH--------H
Confidence 44444445678888888888888863110 0001123456666677788888888888888876542 11 1
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
+..++..+. + +++..|..|+..||.+-.. -+.+.+.|+..+.|. +..|+..++.+||.+..
T Consensus 161 i~~L~~~L~-d-~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~-----~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 161 IPLLINLLK-D-PNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDK-----NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred HHHHHHHhc-C-CCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCC-----ChHHHHHHHHHHHccCC----
Confidence 222222232 3 4667888888888877111 235566677777664 77788888877776422
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
+..+|.+++.|.+.. .|..|+.+||.+- . |..++.|.++++...+..+++.++..+.
T Consensus 222 ------~~av~~Li~~L~~~~---~~~~a~~ALg~ig----~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT---VGDLIIEAAGELG----D--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hhHHHHHHHHHcCCc---hHHHHHHHHHhcC----C--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 367788888887642 5667778888752 1 4677777777764557788877776653
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=112.47 Aligned_cols=360 Identities=15% Similarity=0.121 Sum_probs=227.9
Q ss_pred CcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhc
Q 000196 21 GSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELID 98 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~ 98 (1874)
......+..++.+.|.....+ .|...+++.... +..+.--......+++++.+++. ..++..+.-|.-|+-.+..
T Consensus 63 ~~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~---~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 63 SQASNLELMLAALYSDDPQQQLTATQAFRKLLSK---ERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred HHhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHcc---CCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 333447778888877654333 366666666532 22221111111245666667665 5567789999999999977
Q ss_pred cccCcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHHhhhcCCCcchhHHHHHH
Q 000196 99 VALGENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE--FQVKMALDWLRGDRVEYRRFAAVL 175 (1874)
Q Consensus 99 ~~~~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~~~l~~~~~~~~r~aA~~ 175 (1874)
+......-.+ ....+.+..++. +.+.+|++.|.|+||.+|..+... .++|- ..++.++..+.....-.-.+-+.+
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred CchhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 6422111010 012234455554 568999999999999999864322 22222 145555555554333345667789
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCC
Q 000196 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~ 252 (1874)
+|.-++.+. |.-=...+..++|.+...+.+.++.|...|++|++.+.+. +....+. -..+++.+...|..++
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-----~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-----SNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHHccchHHHHHHHcCCC
Confidence 999999996 6655568899999999999999999999999999876432 2222222 2356777777776653
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHH
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHIL 329 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~-~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll 329 (1874)
..++-.|+.++|-++.+.++..+--++ ..++.+..++. ++...+|+.+|++|..+++-.+++. +..+ ..++|.|+
T Consensus 293 -~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi-qaVida~l~p~Li 370 (514)
T KOG0166|consen 293 -PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI-QAVIDANLIPVLI 370 (514)
T ss_pred -cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH-HHHHHcccHHHHH
Confidence 355778888888877665543222222 13334444444 6777799999999999998666543 3333 58999999
Q ss_pred HhhcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 330 TVLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 330 ~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..|++.+ .|-.|.-+|++++..-..+...|+ ..+++.+...|.-.+.+....++.++..|.+.
T Consensus 371 ~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 371 NLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9998765 466788899997655444555665 23666666666433333333566777766654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=127.79 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=177.3
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+..+++|+++.||++|+..++.+-. ..+++.|. .++.|+++.||..++.+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~---------------------------~~~~~~L~-~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP---------------------------PGFGPALV-AALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc---------------------------hhHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 44577888999999999887776531 11223333 346899999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
.. +...+ ...+.+...+.|+++.||..|+..|+.+....+ ..+ +..+. + .++..|..|+..
T Consensus 677 ~~---l~~~~---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~--------~~l---~~~L~-D-~d~~VR~~Av~a 737 (897)
T PRK13800 677 RE---LVEVL---PPAPALRDHLGSPDPVVRAAALDVLRALRAGDA--------ALF---AAALG-D-PDHRVRIEAVRA 737 (897)
T ss_pred HH---HHhcc---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCH--------HHH---HHHhc-C-CCHHHHHHHHHH
Confidence 51 11101 123456677888899999999999988653221 112 22233 3 578888888888
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|+.+-. .+.++..+.|+ ++.|+..++.+|+.+....+ ..+|.+...++|. +..
T Consensus 738 L~~~~~-------------~~~l~~~l~D~-----~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~ 790 (897)
T PRK13800 738 LVSVDD-------------VESVAGAATDE-----NREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPL 790 (897)
T ss_pred HhcccC-------------cHHHHHHhcCC-----CHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHH
Confidence 886511 02345556664 78899888888887643211 1256777788876 588
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccccc
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1874)
+|..|+.+||.+- . + +.+...+...|+++ ++.||.+|++.||.+|.
T Consensus 791 VR~aA~~aLg~~g----~---~----~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~---------------------- 836 (897)
T PRK13800 791 VRAAALAALAELG----C---P----PDDVAAATAALRAS-AWQVRQGAARALAGAAA---------------------- 836 (897)
T ss_pred HHHHHHHHHHhcC----C---c----chhHHHHHHHhcCC-ChHHHHHHHHHHHhccc----------------------
Confidence 9999999998752 1 1 23445577777654 78999999999887651
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 000196 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1874)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll 905 (1874)
...+..|+..|+|++. .++..++.+|..+ +--+...+.+.
T Consensus 837 ------------------------------~~a~~~L~~~L~D~~~-~VR~~A~~aL~~~---------~~~~~a~~~L~ 876 (897)
T PRK13800 837 ------------------------------DVAVPALVEALTDPHL-DVRKAAVLALTRW---------PGDPAARDALT 876 (897)
T ss_pred ------------------------------cchHHHHHHHhcCCCH-HHHHHHHHHHhcc---------CCCHHHHHHHH
Confidence 1123567888888864 3445566555543 11246778888
Q ss_pred HHHhcCCcchhHHHHHHHH
Q 000196 906 HTVRTCDDYLKDYITWKLG 924 (1874)
Q Consensus 906 ~~l~~~~~~~~~~~~~~l~ 924 (1874)
..+.+.++.+|..+...|.
T Consensus 877 ~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 877 TALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 8888888888888776654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-07 Score=106.64 Aligned_cols=351 Identities=16% Similarity=0.144 Sum_probs=222.7
Q ss_pred hccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--
Q 000196 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-- 587 (1874)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-- 587 (1874)
.+.+++...+..|..+.++++..... ++...-....+++.+++..-.+..+.++..+--+|+.
T Consensus 74 ~~~S~~~~~q~~a~~~~rkllS~~~~---------------ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIA 138 (514)
T KOG0166|consen 74 ALYSDDPQQQLTATQAFRKLLSKERN---------------PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIA 138 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCCC---------------CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHh
Confidence 34444555566677778887754321 1112233456778888776667778888876555531
Q ss_pred CCC--cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCCCChHhH
Q 000196 588 NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCR 659 (1874)
Q Consensus 588 ~~~--f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r 659 (1874)
... --........++.+..++..++..|++.|+++||.++...|. +|.++ ..++..+..+ ......
T Consensus 139 sgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-----~Rd~vl~~g~l~pLl~~l~~~-~~~~~l 212 (514)
T KOG0166|consen 139 SGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-----CRDYVLSCGALDPLLRLLNKS-DKLSML 212 (514)
T ss_pred cCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-----HHHHHHhhcchHHHHHHhccc-cchHHH
Confidence 000 001122345688888999999999999999999999988754 44443 3344444443 223456
Q ss_pred HHHHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHH
Q 000196 660 EESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEA 737 (1874)
Q Consensus 660 ~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~ 737 (1874)
..+.|+|..+++.. |..-..-+.++++.|...+... +..|...++.++..|+....+.+.-.++ .++|.+++.
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-----D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-----DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 78999999999876 3322234667888888888765 7889999999999998765554433333 568889998
Q ss_pred HhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCC
Q 000196 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 738 l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
|... +..++..|+.++|.++.+++....- ..-...++.|..++.......+|.+|+++++-|+|=.+...+
T Consensus 288 L~~~-~~~v~~PaLRaiGNIvtG~d~QTq~-vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq------- 358 (514)
T KOG0166|consen 288 LGHS-SPKVVTPALRAIGNIVTGSDEQTQV-VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ------- 358 (514)
T ss_pred HcCC-CcccccHHHhhccceeeccHHHHHH-HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH-------
Confidence 8765 4567889999999988776553111 112467888889887665667999999999998762221100
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL 897 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l 897 (1874)
. ....-+++.|+.+|..... ..+..++=||.++...-..+-..||
T Consensus 359 -----------------a-----------------Vida~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 359 -----------------A-----------------VIDANLIPVLINLLQTAEF-DIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred -----------------H-----------------HHHcccHHHHHHHHhccch-HHHHHHHHHHHhhcccCCHHHHHHH
Confidence 0 0112345667777765443 2344566666665544333334454
Q ss_pred --cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000196 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1874)
Q Consensus 898 --~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1874)
..+++.|...+.-.+......++..+..+....
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 347788877773334445555666666655443
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0036 Score=80.03 Aligned_cols=375 Identities=17% Similarity=0.177 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHH------hhhChHHHHHHHHHHHHHHHhhhcCCChhhh-hhHHHHH-
Q 000196 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQA------RDLGGEAFSRFMDQLYDRISGLLESNDAAEN-LGALRAI- 93 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~------~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r-~~~i~ai- 93 (1874)
+.+++.+-.-|.+.. +..=+|-..|+.++.+.= |.--+..+..+++.|.+.+..+++..+...- .+-+...
T Consensus 126 p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKi 205 (1010)
T KOG1991|consen 126 PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKI 205 (1010)
T ss_pred hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 344555544455443 233356666666665431 1111223566677777777778776544221 1111111
Q ss_pred -hHhhc--cccC-cchhHHHHHHHHHHhhccc-------CCChHH---------HHHHHHHHHHHhhhCCCc---ch---
Q 000196 94 -DELID--VALG-ENASKVSKFSNYMRTVFEV-------KRDREI---------LVLASKVLGHLARAGGAM---TA--- 147 (1874)
Q Consensus 94 -~~li~--~~~~-~~~~~~~~~~~~L~~~l~~-------~~d~~v---------~~~aa~~lg~l~~~~g~~---~~--- 147 (1874)
-+++- ++.. -..+....|......++.- .-|+++ -+=|.-.+.|+-.-.|.. ..
T Consensus 206 fks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~ 285 (1010)
T KOG1991|consen 206 FKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYK 285 (1010)
T ss_pred HHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhH
Confidence 23322 2211 1244556677777666652 124443 344555666776654432 11
Q ss_pred HH--------HHHHHHHHHhhhc--CCCcc-hhH--HHHHHHHHHHHhhcC--ccchhchHHHHHH-HHHhh--------
Q 000196 148 DE--------VEFQVKMALDWLR--GDRVE-YRR--FAAVLILKEMAENAS--TVFNVHVAEFVDA-IWVAL-------- 203 (1874)
Q Consensus 148 ~~--------v~~~~~~~~~~l~--~~~~~-~~r--~aA~~~l~~la~~~p--~~~~~~l~~il~~-i~~~l-------- 203 (1874)
+| ++..++..+..+. ..+-| ..| .-++.++......+. +++.||+.-|+.. |+..|
T Consensus 286 ~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~dee 365 (1010)
T KOG1991|consen 286 EFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEE 365 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHH
Confidence 11 2222222222221 11111 112 223333333332222 3678999998855 66655
Q ss_pred ---cCCchhHH-------------HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhcc-------CCCChhHHHHH
Q 000196 204 ---RDPTLAVR-------------ERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG-------RNAPVHSIHGS 260 (1874)
Q Consensus 204 ---~D~~~~VR-------------~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~-------~~~~~~~~~~a 260 (1874)
.||+.-|| -||...+-.+ .+.|.. +-++++++-+.+-++ .+++.+.+.||
T Consensus 366 lwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~---~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 366 LWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL---VSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred HHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH---HHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 36667777 2344333322 233422 223333333332222 22346789999
Q ss_pred HHHHHHHHHcc--hhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 261 LLAVGELLRNT--GEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 261 l~~l~~ll~~~--~~~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
+.++|.|.+.- ..-....++. +...|+..++++--..|..+|+.++.++...-.. +.-+...+....++|.+.+
T Consensus 439 L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCc
Confidence 99999998621 1122233333 2345667778888889999999999888532111 1234566666667776433
Q ss_pred --CcchHHHHHHHHHhhchh---hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 337 --ERDSGFIALGEMAGALDG---ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 337 --~R~~a~~alg~la~~v~~---~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
.|..|..||..+..+... .+.|++|++|+.+..-...... ...-.++..++..+++.+.||..++++.|.
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELSPFAVELCQNLA 591 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 467888888888877653 3889999999888765533222 245678888899999999999988877654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-05 Score=99.51 Aligned_cols=551 Identities=19% Similarity=0.150 Sum_probs=296.3
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc----CccchhchHHHH-H
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA----STVFNVHVAEFV-D 197 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~----p~~~~~~l~~il-~ 197 (1874)
+|...+..+..-+..++...|.... -..+++.+-+.+ .+.. .++..+|++- +..-.|.+..++ +
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~d--------ev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDED--------EVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchh--------HHHHHHHHHhcccchhccchhHHHHhhH
Confidence 4556666666666666655444332 112333333333 1111 2333444443 333344444444 4
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhH-HHHHHHHHHHHHHcch-hhh
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHS-IHGSLLAVGELLRNTG-EFM 275 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~-~~~al~~l~~ll~~~~-~~~ 275 (1874)
.+-....+....||+.+.+.+........+. .....+.+ +...+... +|.+ |-.++-+++...-... +.+
T Consensus 163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~------~~~~~lv~-l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 163 PLELLATVEETGVREKAVESLLKVAVGLPKE------KLREHLVP-LLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcChH------HHHHHHHH-HHHHccch-hhhhcchhhhhhhHHhccCCChHHH
Confidence 4555566888889999999888766544321 11122222 22222222 2332 2333334444433222 344
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000196 276 MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1874)
Q Consensus 276 ~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~ 353 (1874)
......++. ..-++..+.||.++..-++.+|...+.+.+. ..+++.+.+.+.... .|.+|+.+++.+.....
T Consensus 235 k~elr~~~~---~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIVQ---SLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHH---hhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 443333333 3346889999999999999999887765432 456666666665543 58899999998877765
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHhCCCCh
Q 000196 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDI-MFSAGLSTTLVDALEQITVSIPSLL 432 (1874)
Q Consensus 354 ~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~-ll~~~ls~~l~~~l~~i~~~~p~l~ 432 (1874)
... +....+.+.+.+...+...+...-....+..+...+|+.... ..+.++ +...+..+..... +++...
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~--a~a~~~---- 379 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRY--AIAKKV---- 379 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhH--Hhhcch----
Confidence 532 333344555555554443332223344445566666652111 000000 0001111000000 000000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC---CCcchhhHHHHHh
Q 000196 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK---GHDLLEFARDSVV 508 (1874)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~---~~~l~~~v~~~~~ 508 (1874)
.-+...... .+. .....|+++.
T Consensus 380 ---------------------------------------------------~~l~~~l~~~~~~~i~~~~ilp~~~~--- 405 (759)
T KOG0211|consen 380 ---------------------------------------------------QKLACYLNASCYPNIPDSSILPEVQV--- 405 (759)
T ss_pred ---------------------------------------------------HHHhhhcCcccccccchhhhhHHHHH---
Confidence 000000000 000 0111243333
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc--
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY-- 586 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~-- 586 (1874)
+..+.+..||.+.+..+..+....+ +. +.+...++ ++.....|..+.||...+.-+.
T Consensus 406 -lv~d~~~~vr~a~a~~~~~~~p~~~---------k~----------~ti~~llp-~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 406 -LVLDNALHVRSALASVITGLSPILP---------KE----------RTISELLP-LLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred -HHhcccchHHHHHhccccccCccCC---------cC----------cCccccCh-hhhhhcchhhHHHHHhhHHHHHHH
Confidence 3455678888766644333321111 00 11222222 2222457888889988774221
Q ss_pred -C-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-cchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 587 -G-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 587 -~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
. .........+...++.+.....|....+|.+.++.+..++...+.. +-+.+..++...+. + .....|+.|+
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~----d-~v~~Ir~~aa 539 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLP----D-HVYSIREAAA 539 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhh----h-hHHHHHHHHH
Confidence 1 0111112223446777777777888999999999998888876522 23444443333322 2 3446788999
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~ 743 (1874)
..+..++...| -.=+...+++.++....++ +.-++.+.+.++..++.++|..+ +..+++|.+.....|. .
T Consensus 540 ~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~-----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-v 609 (759)
T KOG0211|consen 540 RNLPALVETFG--SEWARLEEIPKLLAMDLQD-----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-V 609 (759)
T ss_pred HHhHHHHHHhC--cchhHHHhhHHHHHHhcCc-----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-c
Confidence 99999999888 2233455666666655543 56678888999999999999865 4578999999988887 5
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.++|-++++.|-.+....... ..--.+.+.+. .|..+++..+|..|...+|.+.
T Consensus 610 anVR~nvak~L~~i~~~L~~~----~~~~~v~pll~-~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILKLLDES----VRDEEVLPLLE-TLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hhhhhhHHHHHHHHHhhcchH----HHHHHHHHHHH-HhccCcccchhHHHHHHHHHHH
Confidence 789999999999887655331 11123444444 4445667889999988888765
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.009 Score=75.57 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
.++...++...+.....|.-+-+|.+++.++.. | .+++ -+|.+++.|.+...+.+.+|-...+++|+..++.+
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d 561 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD 561 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC
Confidence 455666677777777777778899999998852 1 1111 24788999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHH-HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHH
Q 000196 631 PAYVLPALRRHLIQLLTY-LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVL 709 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~ 709 (1874)
|+.--..-.++....+.. ++++ +++-.-..+-.++-++... ..-..|+....++.+++.+..+... ..+.....++
T Consensus 562 pef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~-~~~~l~~~ai 638 (1005)
T KOG2274|consen 562 PEFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADK-APAGLCAIAI 638 (1005)
T ss_pred hhhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccc-cCchhhHHHH
Confidence 874211111111111111 3455 6675555555555554432 1223467777778888877754211 1233444555
Q ss_pred HHHHHHHHhcccchh-hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 710 VTVGDLARVGGFGMR-QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 710 ~~l~~La~~~g~~~~-~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
..|..+.+..+..+. ..+...+|.+.++.-...+.+.-.+|-.+|..++.
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 566666676665543 35567778877776544444444455555554443
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0039 Score=82.67 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=115.7
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
....+++.++..+..|. +..-+.|--|+.+|..+++-.|..+. -+.+..+|-.-+.|.+..||+||.+-+|.+.-
T Consensus 810 f~~sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-- 884 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVL-- 884 (1692)
T ss_pred HHHhhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--
Confidence 34456778888887776 55568899999999999999888653 45667778889999999999999999887642
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
..++.+.++|+.+..++.|+. .-+|..++.++..+.+..++| +.+.++|..+++..++.+..|++.|+.++
T Consensus 885 ------~~~e~~~qyY~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 885 ------SIPELIFQYYDQIIERILDTG-VSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred ------ccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 223466777888888888874 678999999999998877665 34567888888877777777888887766
Q ss_pred HhH
Q 000196 306 PRI 308 (1874)
Q Consensus 306 ~~l 308 (1874)
-.+
T Consensus 956 ~kl 958 (1692)
T KOG1020|consen 956 LKL 958 (1692)
T ss_pred HHH
Confidence 554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-06 Score=112.92 Aligned_cols=255 Identities=22% Similarity=0.154 Sum_probs=136.9
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH
Q 000196 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1874)
+......|+..|+.+.- +-....+...++|+++.||.+|+.++..+................ ........
T Consensus 634 d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~d~~VR~~ 703 (897)
T PRK13800 634 DPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----PDPVVRAA 703 (897)
T ss_pred CHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----CCHHHHHH
Confidence 33455677777777631 112233446778899999999999988774311100000000000 00000000
Q ss_pred HHHHHH-------HHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 558 IEELVE-------KLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 558 ~~~vl~-------~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
.-..+. ..+...+.|+|+.||..++.+|.. ++. .+.|..+++|++++||..+...|+.+....
T Consensus 704 A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~---~~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 704 ALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS---VDD-------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc---ccC-------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 101110 112224567777777777777752 111 123445677777777777777777765543
Q ss_pred cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 000196 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1874)
+.. .|. |..+..+ .++..|..|+..|+.+-.. ..+...++..+.++ ++.|+.+++.
T Consensus 774 ~~~-~~~--------L~~ll~D-~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~-----d~~VR~~Aa~ 829 (897)
T PRK13800 774 APA-GDA--------VRALTGD-PDPLVRAAALAALAELGCP---------PDDVAAATAALRAS-----AWQVRQGAAR 829 (897)
T ss_pred chh-HHH--------HHHHhcC-CCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC-----ChHHHHHHHH
Confidence 211 111 1122233 4567777777776665211 11223355556653 6677777777
Q ss_pred HHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHH
Q 000196 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1874)
Q Consensus 711 ~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~v 790 (1874)
+|+.+.. ++.++.++..|.|. +..+|..|+.+||.+ .+ -|...+.|...+++ .+..|
T Consensus 830 aL~~l~~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~---~~--------~~~a~~~L~~al~D-~d~~V 886 (897)
T PRK13800 830 ALAGAAA----------DVAVPALVEALTDP-HLDVRKAAVLALTRW---PG--------DPAARDALTTALTD-SDADV 886 (897)
T ss_pred HHHhccc----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc---CC--------CHHHHHHHHHHHhC-CCHHH
Confidence 7765431 23456777777776 577888888888774 01 13456666666653 36778
Q ss_pred HHHHHHHHH
Q 000196 791 RREVLKVLG 799 (1874)
Q Consensus 791 r~~al~~lg 799 (1874)
|.+|.+.|+
T Consensus 887 r~~A~~aL~ 895 (897)
T PRK13800 887 RAYARRALA 895 (897)
T ss_pred HHHHHHHHh
Confidence 888777764
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00023 Score=90.90 Aligned_cols=322 Identities=14% Similarity=0.206 Sum_probs=194.4
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-H
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-F 152 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~ 152 (1874)
++.+++.++.+.-.-+...|+.+++.. .......++.++|...+. ..++.|+..+++.+++++.+.+....-+++ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 667777654444444555566666543 223336778889999997 468999999999999998864322211222 2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~---~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
.++.++..|. +.+.....+|..+|+.++.+.+.. |.+.+ ++.+...+..++..+|..+.+.+..+...-.
T Consensus 120 l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~--- 192 (503)
T PF10508_consen 120 LLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHSP--- 192 (503)
T ss_pred HHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcCH---
Confidence 4555555554 445566788889999999764321 12222 6666777777788899888887766543211
Q ss_pred hhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhc--chhHHH----H
Q 000196 230 TRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEH--RDRLVR----L 299 (1874)
Q Consensus 230 ~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~--~~~~vr----~ 299 (1874)
..-+.. ..+++.+...+.+ +|.-++..++.++.+|..... +++... .+++.+...+.+ .++..+ -
T Consensus 193 --~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 193 --EAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred --HHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhh
Confidence 111222 2488888888888 457789999999999988321 333321 244444444432 222111 1
Q ss_pred HHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchh-hhh-----hhhHHHHHHHHHhh
Q 000196 300 SITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDG-ELF-----HYLPTITSHLREAI 371 (1874)
Q Consensus 300 ~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~-~~~-----p~l~~i~~~l~~~L 371 (1874)
..+...+.++...+..+...| +.++..+...+... ..+..|++++|.++..+.. .+. +-+..++..+-...
T Consensus 268 g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 268 GRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 234566667777777776644 78888888777654 3689999999999977744 222 12223334444444
Q ss_pred cCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 000196 372 APRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA 411 (1874)
Q Consensus 372 ~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~ 411 (1874)
.....+.+..+++|++.+...-.+.-...+..+....++.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 3333333457889999887644332333444555555543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.014 Score=73.26 Aligned_cols=400 Identities=15% Similarity=0.168 Sum_probs=212.7
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-----c---
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----G--- 720 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----g--- 720 (1874)
++.+ +....|..|+.++..+.++....+.+-+...+..++...... ++.++.-...+++-+..+|..+ |
T Consensus 370 lEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n--PS~nWk~kd~aiyL~talaik~~t~~~Gvts 446 (960)
T KOG1992|consen 370 LEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN--PSGNWKKKDRAIYLVTALAIKGQTAKHGVTS 446 (960)
T ss_pred cccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC--CCccccccchhhhhhHHHHhhcchhhcceee
Confidence 4444 222336678889999998887667776777777666654432 2335555555666666666543 2
Q ss_pred -cchhhcHHhHHHHHHHHHhcC---cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 721 -FGMRQYISELMPLIVEALLDG---AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 721 -~~~~~~~~~llp~l~~~l~d~---~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+.+..+-+...+..-|... ..+..|..|++-+-..-.. +.| .+.-.+++.+.+.|+.+ +..|..=|..
T Consensus 447 tn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~-~~lm~~~p~li~~L~a~-s~vvhsYAA~ 520 (960)
T KOG1992|consen 447 TNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGK-EHLMALLPRLIRFLEAE-SRVVHSYAAI 520 (960)
T ss_pred ccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc----CCh-HHHHHHHHHHHHhccCc-chHHHHHHHH
Confidence 123333333333333333321 1233343333322111111 111 12235677777888765 4445544444
Q ss_pred HHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHH
Q 000196 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQ 876 (1874)
Q Consensus 797 ~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~ 876 (1874)
++-.+-.++ ++ +..+ +. .+..-.-|....+..|.+.++-|.- ...+
T Consensus 521 aiEkil~vr-----------e~----------~~~~---if---------~~~~iap~~~~ll~nLf~a~s~p~~-~Ene 566 (960)
T KOG1992|consen 521 AIEKLLTVR-----------EN----------SNAK---IF---------GAEDIAPFVEILLTNLFKALSLPGK-AENE 566 (960)
T ss_pred HHHhccccc-----------cC----------cccc---cc---------chhhcchHHHHHHHHHHHhccCCcc-cccH
Confidence 433221110 00 0000 00 0000011334556666666654432 3345
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHh----c-CCcchhHHHHHHHHHHHHHHHH----hHHHhHHHHHHHHHH
Q 000196 877 KVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVR----T-CDDYLKDYITWKLGTLVSIVRQ----HIRKYLQELFSLISE 947 (1874)
Q Consensus 877 ~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~----~-~~~~~~~~~~~~l~~lv~~~~~----~i~~y~~~i~~~i~~ 947 (1874)
....|++.++........|+.+.+++.+-..+. + ++|..-.++|..+|.++...+. .+..+...+++++..
T Consensus 567 ylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~ 646 (960)
T KOG1992|consen 567 YLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT 646 (960)
T ss_pred HHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 688999999988877777888888888776543 3 2445667888999999887753 245677777766655
Q ss_pred hhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHH--HhcccccccCchhhHHHHHHHHHHHhcchh--
Q 000196 948 LWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI--QVLSDAERCNDYTYVLDILHTLEVFGGTLD-- 1023 (1874)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll--~~l~~~~~~~~~~~~~~il~~l~~~g~~~~-- 1023 (1874)
.+...- ...-..++++++.+...-+...-+....++|.++ .++ +++.......+++.++..-|+..-
T Consensus 647 Il~eDI------~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW---~r~gNipalvrLl~aflk~g~~~~~~ 717 (960)
T KOG1992|consen 647 ILSEDI------QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLW---KRSGNIPALVRLLQAFLKTGSQIVEA 717 (960)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHH---hhcCCcHHHHHHHHHHHhcCchhhcc
Confidence 544211 0001145666666655444422222223333333 122 223345556788888877665542
Q ss_pred -hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc---ccchhHhHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Q 000196 1024 -EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ---VTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1024 -~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~---~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~ 1098 (1874)
+.+..|+..+.+++.+-..+ ..+...+..+....+ +.||...|...+.+=+++.. +.-.+..+-.++..+.+
T Consensus 718 ~~~l~~iLGifqkLiaSka~D---h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik 794 (960)
T KOG1992|consen 718 ADKLSGILGIFQKLIASKAND---HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIK 794 (960)
T ss_pred cccchhHHHHHHHHhcCcccc---hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 44556666666666432122 345555555555433 56788888888777776543 55556666667777777
Q ss_pred hcccc
Q 000196 1099 LGEDF 1103 (1874)
Q Consensus 1099 ~g~~f 1103 (1874)
.|..+
T Consensus 795 ~~~~~ 799 (960)
T KOG1992|consen 795 KGGLM 799 (960)
T ss_pred hhhHH
Confidence 77665
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.048 Score=78.74 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=114.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHH
Q 000196 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPI 684 (1874)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~i 684 (1874)
..+..|.++.+|......+. ..+.|....|.+-+.+...+ ++ +....++.+...+|.++...+..+.|++..+
T Consensus 535 ~~aia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al----~~-~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIAL----HD-ENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHHh----hh-hhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 34567889999988887776 12222223343333322222 22 3344566777778878777777777777766
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
...+...+.-. ....+......-+..+.....--+.+|++.++-.++..+++.+ ..+-.+++.++|.+|..+|..
T Consensus 608 ~l~~~s~l~~s----g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~-s~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 608 LLELLTELEFS----GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPS-SGVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred HHHHhchhhhc----chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccch
Confidence 65555554432 1111112112222223232334567888888888888888874 345567899999999999976
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+.+ +++..+...+.+..+..-|+++++++|.+.
T Consensus 683 ~~~~~~--~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 683 MVKWVD--ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred hhhccc--hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 666655 567777776655445677889999998864
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0018 Score=83.70 Aligned_cols=521 Identities=15% Similarity=0.084 Sum_probs=284.4
Q ss_pred hhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
..|..+...++.++-. -+.. ...++|.+.... |..-.|+.+++.-++.+...+. .+++...+++.+.
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t----r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~~~~~ll~~le 165 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT----RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPEYAHMLLPPLE 165 (759)
T ss_pred hhhhhhhccccchhhhcccchh----hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chhHHHHhhHHHH
Confidence 3455554444444332 2222 345666666777 8888999999988887765433 1223333444444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1874)
...... .+.+++.++-.+..++.... +-...++-.+...+- ...-..-|-.++.+++..+-..++.+++. +.
T Consensus 166 ~l~~~e-et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~---~~d~~~sr~sacglf~~~~~~~~~~~vk~---el 238 (759)
T KOG0211|consen 166 LLATVE-ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLA---TGDWFQSRLSACGLFGKLYVSLPDDAVKR---EL 238 (759)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHcc---chhhhhcchhhhhhhHHhccCCChHHHHH---HH
Confidence 433333 46778888887777766332 211222222222111 11111234455666666655555555543 22
Q ss_pred HHHHHHhhcC--CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 000196 325 MNHILTVLRI--PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1874)
Q Consensus 325 ~~~Ll~~L~~--~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~ 402 (1874)
-+...+.-+. +..|..+..-+|.+|..++.+.. ...+++...+...+....++..|+.++..+...+..+- +...
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~ 315 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVK 315 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhh
Confidence 3333333232 34688899999999999987421 22334444444444444456678888887776655432 3344
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhH
Q 000196 403 GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPV 482 (1874)
Q Consensus 403 ~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1874)
.+.+.+++..-++.-+. +..+.+...+..
T Consensus 316 ~~~~~l~~~~~d~~~~v------------~~~~~~~~~~L~--------------------------------------- 344 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRV------------SYMVADKFSELS--------------------------------------- 344 (759)
T ss_pred hhhHHHHHHhcChhHHH------------HHHHhhhhhhHH---------------------------------------
Confidence 45555443211110000 000111111110
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHH
Q 000196 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1874)
Q Consensus 483 ~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1874)
..+|. .-.... ........+.+...++|.+++.-+..+-...... ++.+ ... +.++
T Consensus 345 ----~~~~~-~~~~~~----~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~----------~~~~--i~~---~~il 400 (759)
T KOG0211|consen 345 ----SAVGP-SATRTQ----LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS----------CYPN--IPD---SSIL 400 (759)
T ss_pred ----HHhcc-ccCccc----chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc----------cccc--cch---hhhh
Confidence 00111 000000 0112224456667788888776555543211100 0000 011 1112
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
+ .+...+.|++..||.+........ ..+...-.-...++.....++|+.++||...++.+..+-..++..-...+.+.
T Consensus 401 p-~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s 479 (759)
T KOG0211|consen 401 P-EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS 479 (759)
T ss_pred H-HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence 2 223456899999998876654311 11100001123466777789999999999999877666665543323334444
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHH-HhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVA-RLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~-~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
++..+.++..+ ..++.|....+.+..++...+ .+++++.+..+.. .+.+ .-..++.++...+-.++...|
T Consensus 480 lLp~i~el~~d-~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-----~v~~Ir~~aa~~l~~l~~~~G 550 (759)
T KOG0211|consen 480 LLPAIVELAED-LLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-----HVYSIREAAARNLPALVETFG 550 (759)
T ss_pred hhhhhhhhccc-hhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-----hHHHHHHHHHHHhHHHHHHhC
Confidence 55555566554 457888888888888887665 3444444333333 2333 256788888899999998888
Q ss_pred cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 721 ~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
. .-+...++|.++....+. +.-.|.+.+.++..++.-.|..+. ...+++.+..+.. +..+.||-.+++.+-.
T Consensus 551 ~--~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~----~~~Llp~~~~l~~-D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 551 S--EWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT----CEDLLPVFLDLVK-DPVANVRINVAKHLPK 622 (759)
T ss_pred c--chhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH----HHHHhHHHHHhcc-CCchhhhhhHHHHHHH
Confidence 3 335567888888877654 567899999999999988886532 2367777777654 5578999999988877
Q ss_pred hc
Q 000196 801 MG 802 (1874)
Q Consensus 801 lg 802 (1874)
++
T Consensus 623 i~ 624 (759)
T KOG0211|consen 623 IL 624 (759)
T ss_pred HH
Confidence 65
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.001 Score=82.23 Aligned_cols=474 Identities=16% Similarity=0.180 Sum_probs=242.1
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~ 153 (1874)
+..|++|+.-..|.-|+-=|-+++.- |.+. ---|...++++- +++.+|.+..--=|-|-|+--..+.= +-=..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~--G~dv--S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLAL-LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK--GKDV--SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLAL-LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc--CCcH--HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCcee-eeHHH
Confidence 56788887777787777777777644 3321 123455666664 56899988877777777764222110 00011
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1874)
+++++ .|.+.-.|-.|+.++..|= +....+-++-+|-.+.+|+.+.||..|+.|+-.+-+. +
T Consensus 113 fQk~L----~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL----d---- 174 (968)
T KOG1060|consen 113 FQKAL----KDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL----D---- 174 (968)
T ss_pred HHhhh----cCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC----C----
Confidence 22222 3555556666655544321 1112223334456778999999999999998766432 1
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 234 ~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
...+..+.+.+..-|.|.+ .-+.-+|++++.++.-..-+.+.++|+++|..+...-+=+ |-. +|..|-.|+.
T Consensus 175 ~e~k~qL~e~I~~LLaD~s-plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg----Qvv---lI~mL~RYAR 246 (968)
T KOG1060|consen 175 PEQKDQLEEVIKKLLADRS-PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG----QVV---LINMLTRYAR 246 (968)
T ss_pred hhhHHHHHHHHHHHhcCCC-CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh----HHH---HHHHHHHHHH
Confidence 1223344444444455664 5678888888887755444789999999997665322111 112 2222333333
Q ss_pred hhHHHHHH---------------------------HHHHHHHHHhhcCC-CCcch-HHHHHHHHHhhchhhhhh--hhHH
Q 000196 314 DRFVTNYL---------------------------KICMNHILTVLRIP-AERDS-GFIALGEMAGALDGELFH--YLPT 362 (1874)
Q Consensus 314 ~~f~~~yl---------------------------~~~~~~Ll~~L~~~-~~R~~-a~~alg~la~~v~~~~~p--~l~~ 362 (1874)
..|.++.. +.=+..|++..+.- .-|.. ...+...+-- .+.| -...
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y----~lAP~~~~~~ 322 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY----HLAPKNQVTK 322 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH----hhCCHHHHHH
Confidence 33322100 11111122211100 01211 1111111100 1111 1223
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHhCCCChHHHHH
Q 000196 363 ITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQD 437 (1874)
Q Consensus 363 i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~-----~i~~~~p~l~~~i~~ 437 (1874)
|...+...|. .+..++.-.++++..++.....-|.||+.... -+.-++.....++ .++..- --+.|..
T Consensus 323 i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La~es--ni~~ILr 395 (968)
T KOG1060|consen 323 IAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLANES--NISEILR 395 (968)
T ss_pred HHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHhhhc--cHHHHHH
Confidence 4444444332 23344456889999999887778899887532 1222333322222 111100 0001111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChH
Q 000196 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKA 517 (1874)
Q Consensus 438 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~ 517 (1874)
.+...|. ..|.+-++.|.++||.+.-.-....+....-++.++.+.++.
T Consensus 396 E~q~YI~-------------------------------s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 396 ELQTYIK-------------------------------SSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHHHHHh-------------------------------cCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccch
Confidence 1111110 012235577888888873221222333333445667766888
Q ss_pred HHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhcc
Q 000196 518 TRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ 597 (1874)
Q Consensus 518 VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~ 597 (1874)
|--+|+..+..|+..++.. -.+++.+|....-+=.-+.-|.+++=-+++.....+.+ -
T Consensus 445 Vv~eaV~vIk~Llq~~p~~---------------------h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri-~ 502 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAE---------------------HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI-A 502 (968)
T ss_pred hHHHHHHHHHHHHhhChHH---------------------HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-c
Confidence 8888888888888655421 12233333222101111233444433343211112222 2
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
|++++.+...+.|+..+|+-.++.+-.+|--.++.. -+.+.+++.++
T Consensus 503 PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~-----~kll~~Yv~~L 549 (968)
T KOG1060|consen 503 PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ-----TKLLVQYVFEL 549 (968)
T ss_pred hHHHHHHHHhhccccchhhHHHHHhhhhheEechhh-----HHHHHHHHHHH
Confidence 688999999999999999999999888887777654 34455666555
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0012 Score=81.60 Aligned_cols=319 Identities=14% Similarity=0.139 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+..++---+..+++|+.+.||.++-.++....+.++... ++++..+-.+|.|.++-|--+|+-++..++..+-..+-++
T Consensus 140 IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k-~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn 218 (968)
T KOG1060|consen 140 IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK-DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN 218 (968)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH-HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence 333433334445677777777777666643333333221 2455556667777777777777776666555443344455
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh-Cccc-----------------------cccc-----hHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERL-----------------------IRPY-----IAPIHKAL 688 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~-----------------------~~py-----~~~il~~l 688 (1874)
+|++ .+++..+... + +...+.+|..-+++ .++. =.|| ..-+++..
T Consensus 219 yrkl-C~ll~dvdeW-g----QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st 292 (968)
T KOG1060|consen 219 YRKL-CRLLPDVDEW-G----QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST 292 (968)
T ss_pred HHHH-Hhhccchhhh-h----HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence 5652 3333333222 1 11122222222221 0100 0233 22233333
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccccccc
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~ 768 (1874)
-+.+... ++.|..+++.+.-.+|... -...+...++..|+. +.+++...+..+..++.....-+.||
T Consensus 293 kpLl~S~-----n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~~~lF~P~ 359 (968)
T KOG1060|consen 293 KPLLQSR-----NPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS--NREVQYVVLQNIATISIKRPTLFEPH 359 (968)
T ss_pred cHHHhcC-----CcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHhcchhhhhhh
Confidence 3344432 5666655555554444321 223445555555553 34566667777777666655555555
Q ss_pred cc----------------------------chHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcc
Q 000196 769 NE----------------------------YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1874)
Q Consensus 769 ~~----------------------------~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1874)
.+ .++++.-+...+++. +..+.-.++++||.||..-
T Consensus 360 lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~--------------- 423 (968)
T KOG1060|consen 360 LKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRI--------------- 423 (968)
T ss_pred hhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhh---------------
Confidence 21 123333333333333 3356667777777776200
Q ss_pred cccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccch
Q 000196 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKV 900 (1874)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~i 900 (1874)
. -.++.+++.|+..|+..+- . .++++++.|=+-+... ..-..+|
T Consensus 424 --------------------~-----------sv~~tCL~gLv~Llsshde--~--Vv~eaV~vIk~Llq~~-p~~h~~i 467 (968)
T KOG1060|consen 424 --------------------G-----------SVTDTCLNGLVQLLSSHDE--L--VVAEAVVVIKRLLQKD-PAEHLEI 467 (968)
T ss_pred --------------------C-----------chhhHHHHHHHHHHhcccc--h--hHHHHHHHHHHHHhhC-hHHHHHH
Confidence 0 0236788889888865532 1 3455555543333222 1223346
Q ss_pred hHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCC
Q 000196 901 LPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSF 952 (1874)
Q Consensus 901 lp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~ 952 (1874)
+-.+...+.+- -|..|..++|.+|..+.+ +-..+|+++..+.+.+...
T Consensus 468 i~~La~lldti~vp~ARA~IiWLige~~e~----vpri~PDVLR~laksFs~E 516 (968)
T KOG1060|consen 468 LFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLAKSFSDE 516 (968)
T ss_pred HHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHHHhhccc
Confidence 66665555443 244566777777776654 2345667777776666543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00037 Score=89.04 Aligned_cols=310 Identities=14% Similarity=0.150 Sum_probs=188.4
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH
Q 000196 29 ILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKV 108 (1874)
Q Consensus 29 ~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~ 108 (1874)
+|.+|.+.+.+.-. ...+++...+....++.. .+++...+...+++++...|.-++.++..++.-..+ ....+
T Consensus 43 lf~~L~~~~~e~v~---~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVE---LICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLL 115 (503)
T ss_pred HHHHHhhcChHHHH---HHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHh
Confidence 88888866422221 123444444455566554 445566667788899999999999998888754322 11111
Q ss_pred --HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH-HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC
Q 000196 109 --SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDWLRGDRVEYRRFAAVLILKEMAENAS 185 (1874)
Q Consensus 109 --~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~-~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p 185 (1874)
......+..++. ..|..|.+.|++++.+|+.+.... ..+++.. +..+...+ ...++..|.-+..++..++..++
T Consensus 116 ~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 116 VDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred cCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCH
Confidence 234566777775 678999999999999999863211 1222222 22222222 23345567778888889998888
Q ss_pred ccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHhhccCC-CChhHHHHHH
Q 000196 186 TVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRVQWYYRMFEATQDGLGRN-APVHSIHGSL 261 (1874)
Q Consensus 186 ~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~~~~~~i~~~~~~~l~~~-~~~~~~~~al 261 (1874)
..+.-.. ..+++.++..+.+.+..||..|.+.+..+... . .... .+...+++++..+...-.++ ...-..-|.+
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 8764333 24999999999999999999999988877651 1 1111 11112333443333332222 1111233444
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHH-H---HHHHHHHHHHHHhhcCCC
Q 000196 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFV-T---NYLKICMNHILTVLRIPA 336 (1874)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~-~f~-~---~yl~~~~~~Ll~~L~~~~ 336 (1874)
..++.+....+..+...+..+...+....++.++..+..+++++|.++..... .+. . .-++.++..+....++.+
T Consensus 271 ~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 45555555444455567778888888888999999999999999999864332 222 1 122333444444444433
Q ss_pred --CcchHHHHHHHHHh
Q 000196 337 --ERDSGFIALGEMAG 350 (1874)
Q Consensus 337 --~R~~a~~alg~la~ 350 (1874)
-|..++.|++.+..
T Consensus 351 ~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 351 TELKLRALHALASILT 366 (503)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 46778888888753
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.05 Score=69.19 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=93.3
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh---
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF--- 274 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~--- 274 (1874)
.++.+..++++.+|.+|...+++... ...+...+.+.+.++.. +...|++|+..|...++..|..
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~---------~~~f~~aL~~va~~~~~---sl~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLEL---------TEGFGVALAEVAANKDA---SLPLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhcccc---------chHHHHHHHHHHhCccc---CchHHHHHHHHHHHHHHHhCCChHh
Confidence 34567789999999999998876421 11233344444443322 2456889998888888854411
Q ss_pred -------hHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHH
Q 000196 275 -------MMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIA 344 (1874)
Q Consensus 275 -------~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~a 344 (1874)
....... +-+.++..+.+.+..+|.++..++..+|.++-. .-|+++++.+...+...++ -..|+++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~am~v 151 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHGAMRV 151 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhhHHHH
Confidence 1112222 223445555678889999999999999987643 2479999999999986443 3478888
Q ss_pred HHHHHhhchh
Q 000196 345 LGEMAGALDG 354 (1874)
Q Consensus 345 lg~la~~v~~ 354 (1874)
+.++...+-.
T Consensus 152 L~el~~ev~~ 161 (1005)
T KOG2274|consen 152 LAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHH
Confidence 8888776643
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.012 Score=73.71 Aligned_cols=404 Identities=17% Similarity=0.161 Sum_probs=203.7
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 290 LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 290 ~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
++|++..|...|+.+++.++. .+.+ +.+.|.+-..|+.. -.|-+|..|.-.+.+.+++-+.-|++. .
T Consensus 116 L~s~nq~vVglAL~alg~i~s---~Ema----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~----~ 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS---PEMA----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA----F 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC---HHHh----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH----H
Confidence 467888899999999998863 2333 44555555555543 358899999999888887754444443 3
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH----------HhCCCChHHHHH
Q 000196 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT----------VSIPSLLPTIQD 437 (1874)
Q Consensus 368 ~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~----------~~~p~l~~~i~~ 437 (1874)
+..|.+++..+-...+..+..+++. +++...|.+.+.+.++ .-|+.+. ..+| .|.+|=
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV---------~iLk~l~~~~yspeydv~gi~--dPFLQi 252 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLV---------KILKQLTNSGYSPEYDVHGIS--DPFLQI 252 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHH---------HHHHHHhcCCCCCccCccCCC--chHHHH
Confidence 4444445444444566666666654 3333344444443332 1222222 1112 244555
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc----ccCCCcchhhHHHHHhhhcc-
Q 000196 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF----NFKGHDLLEFARDSVVLYLD- 512 (1874)
Q Consensus 438 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~----~f~~~~l~~~v~~~~~~~l~- 512 (1874)
++|..+.. .|+... + ....-.+.|+.. +-+...-...+-+||..-++
T Consensus 253 ~iLrlLri--LGq~d~------------------d--------aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I 304 (866)
T KOG1062|consen 253 RILRLLRI--LGQNDA------------------D--------ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI 304 (866)
T ss_pred HHHHHHHH--hcCCCc------------------c--------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc
Confidence 55555541 222110 0 001112222222 11111112334455544444
Q ss_pred CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcc
Q 000196 513 DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFD 592 (1874)
Q Consensus 513 ~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~ 592 (1874)
.++.+.|..|+..+++++...-.. .+++. +..|+.+...||+..-
T Consensus 305 ~~~~~LrvlainiLgkFL~n~d~N------------------irYva--Ln~L~r~V~~d~~avq--------------- 349 (866)
T KOG1062|consen 305 RSNSGLRVLAINILGKFLLNRDNN------------------IRYVA--LNMLLRVVQQDPTAVQ--------------- 349 (866)
T ss_pred cCCchHHHHHHHHHHHHhcCCccc------------------eeeee--hhhHHhhhcCCcHHHH---------------
Confidence 456788888888888877543211 11111 1122222223332211
Q ss_pred hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
.+=..+..|++|++..+|+.|+++.-.|...+ . ++.++.+++..|..+ +..-+...+.-+..+++.
T Consensus 350 ------rHr~tIleCL~DpD~SIkrralELs~~lvn~~--N----v~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 350 ------RHRSTILECLKDPDVSIKRRALELSYALVNES--N----VRVMVKELLEFLESS--DEDFKADIASKIAELAEK 415 (866)
T ss_pred ------HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--c----HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHh
Confidence 12345667888999999999999998887755 2 333333444444443 556778888888899988
Q ss_pred CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH-HHhcCcchhhHHHHH
Q 000196 673 CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE-ALLDGAAVTKREVAV 751 (1874)
Q Consensus 673 ~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~-~l~d~~~~~~r~~A~ 751 (1874)
..+.=+=|++.++.++... .+- .+.++..+.+.-|+ ...++.-..-+..+.-.+.. .+.+-+....-..|.
T Consensus 416 faP~k~W~idtml~Vl~~a-G~~----V~~dv~~nll~LIa---~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 416 FAPDKRWHIDTMLKVLKTA-GDF----VNDDVVNNLLRLIA---NAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred cCCcchhHHHHHHHHHHhc-ccc----cchhhHHHHHHHHh---cCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 7665555677766665443 211 13344444433322 22122111111122222221 122222233456899
Q ss_pred HHHHHHHhhc---cccccccc-cchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 000196 752 STLGQVVQST---GYVITPYN-EYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIM 801 (1874)
Q Consensus 752 ~~Lg~l~~~~---~~~i~p~~-~~p~ll~~Ll~~l~~~~-~~~vr~~al~~lg~l 801 (1874)
|++|.--... +....|.. .-.+++..+...+.... +..++-=++-++-.+
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KL 542 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKL 542 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999643221 11112221 12468888888875443 345554454444443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=76.10 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
+.|.+|+..|.+++.+.+..+.+|++.|++.|+.++.|++.+||..|+++|.++...... ..-.++..+|+.+...
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~----~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG----EILPYFNEIFDALCKL 76 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999998876541 2234678899999998
Q ss_pred ccCCCChhHHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGE 266 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ 266 (1874)
+.|++ ..++.||- .|..
T Consensus 77 ~~D~d-~~Vr~~a~-~Ld~ 93 (97)
T PF12755_consen 77 SADPD-ENVRSAAE-LLDR 93 (97)
T ss_pred HcCCc-hhHHHHHH-HHHH
Confidence 88885 56677763 4433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.044 Score=77.47 Aligned_cols=499 Identities=15% Similarity=0.111 Sum_probs=255.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----~~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|...|+.+.+...+....... ........+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA------PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667777888889988887665432 2334566778889999999999988876543211 112234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1874)
-+.|++++|+..|++.....++. ......+..|+...|+++.-.......... ++.. .......+.+..+.|+++
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQL-DPEL-GRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCcc-hhhHHHHHHHHHhcCCHH
Confidence 88899999999999887643332 345567778888999987555444332211 1111 112234456777889998
Q ss_pred hHHHHHhhcCCCC--cc-hhhccccccccCCCCCchHHHHHHHHHHhcC-hhhhHHHHHHHHHHh-HhhhhHHHHHHhhc
Q 000196 1445 QMAEYVSRLDDGD--ES-KLRGLGNTAANGDGSSNGTFFRAVLLVRRGK-VLESYERAYSNMVRV-QQLSELEEVIDYCT 1519 (1874)
Q Consensus 1445 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~-~~esy~ray~~l~~l-q~L~EleEii~~~~ 1519 (1874)
.....+..+.... .. .+..+|...... +.+-+|+....+.. ....+..++..+..+ ....+.++.+++..
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGK-----GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8777666543211 00 011111111000 01111111111000 000001111111111 11112222222110
Q ss_pred C-CCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000196 1520 L-PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1874)
Q Consensus 1520 ~-~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1874)
. ...++........+.... ....+.+.-...+ +..+-....+...|+.++....+.|+++.|...+.++...
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLY-----LRTGNEEEAVAWL--EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHH-----HHcCCHHHHHHHH--HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0 000000000000010110 0112222111111 1111111244678888999999999999999988887654
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000196 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1874)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~ 1678 (1874)
.+ ..+......+..+...|+ ..+|+..++..+...... ......++.++...
T Consensus 597 ~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 597 AP----------DSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPDS---------------ALALLLLADAYAVM 648 (899)
T ss_pred CC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHc
Confidence 33 235667777788888884 678888888776431100 01112334444444
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH---------HHhhhccCCCCc------------
Q 000196 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV---------MSHYTLRGLPSV------------ 1737 (1874)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~---------~~~~~~~~~~~~------------ 1737 (1874)
|+ .++....|+++.+.+|+...+|..++....+. ++...... +..
T Consensus 649 ~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 649 KN-------------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred CC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 43 46677888888888888888888777654321 11000000 100
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-HHHHHHHHhccCCC
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-VVLPQIIARIHSNN 1816 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-~~ipQLiari~~~~ 1816 (1874)
...-...|++.|-+++... ++. +....+..++...|...+..+.+.+.+..-|.+... ..+-.+..+.+...
T Consensus 715 ~~g~~~~A~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA-----PSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC-----CCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 0112357888888888764 222 556778888888898888877777777766665422 22223333333322
Q ss_pred hhHHHHHHHHHHHHHhhCchhhH--HHHHHH-hcCCcHHHHHHHHHHHHHHhhccC
Q 000196 1817 RAVRELIQSLLVRIGQSHPQALM--YPLLVA-CKSISNLRRAAAQEVVDKVRQHSG 1869 (1874)
Q Consensus 1817 ~~v~~~l~~ll~~i~~~hPqa~l--y~L~v~-~kS~~~~R~~~a~~Il~~~~~~~~ 1869 (1874)
--..++.++.+.+|.... ..+... .+... ..|...++++-...|
T Consensus 788 -----~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 788 -----KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAP 834 (899)
T ss_pred -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCC
Confidence 233445555566665432 222222 22222 226677776655444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0017 Score=81.26 Aligned_cols=300 Identities=14% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHHHHHHHHcCCC--Cch--hhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHh-----hh--cCCCh-hhhhhHHHH
Q 000196 25 ALNRILADLCTHG--NPK--EGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISG-----LL--ESNDA-AENLGALRA 92 (1874)
Q Consensus 25 ~~~~~~~~L~s~~--~~~--~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~-----l~--~s~~~-~~r~~~i~a 92 (1874)
++.++++...+.. +.. ......+.+.+....+.++.+.-.+..++++..+.. -+ .++.. .....-+..
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 5556666554332 111 224444677777778899999888877777765440 01 11111 122223333
Q ss_pred HhHh-hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHH
Q 000196 93 IDEL-IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRF 171 (1874)
Q Consensus 93 i~~l-i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~ 171 (1874)
+..+ ..++..-..+....+.+-+..+.-...+...+..++++++.|+..-. ..+.++..++...+-+.+......|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP--DDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhhhcccCCcchhH
Confidence 3344 44442222222333433333333235568889999999999987511 12233344444443332234445677
Q ss_pred HHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh---cch--h----hHHHHHHHHHH
Q 000196 172 AAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK---RET--R----WRVQWYYRMFE 242 (1874)
Q Consensus 172 aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~---r~~--~----~~~~~~~~i~~ 242 (1874)
.++.++..++.+.=---.|.-..+++.++..+.| +.+...|+++++.++..... ++. . ++.+++..++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 7777777766653222245666777888888888 67888899999887754222 111 1 34566777888
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl 321 (1874)
.+.++..+.+ .+.+..-+.+|.-++.+.+ ..+.++++++++.++..++..+..++.+++.++..+..-.++.+. .|+
T Consensus 327 ~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~-~hl 404 (415)
T PF12460_consen 327 KLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS-EHL 404 (415)
T ss_pred HHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH-HHH
Confidence 8888887764 3478888899999999655 567889999999999999999999999999999999887766554 489
Q ss_pred HHHHHHHHH
Q 000196 322 KICMNHILT 330 (1874)
Q Consensus 322 ~~~~~~Ll~ 330 (1874)
+.+++.|++
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999998875
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.11 Score=68.21 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=130.1
Q ss_pred hhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhccc-------C--CChHHHHHHHHHHHHHhhhCCCc
Q 000196 76 GLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEV-------K--RDREILVLASKVLGHLARAGGAM 145 (1874)
Q Consensus 76 ~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~-------~--~d~~v~~~aa~~lg~l~~~~g~~ 145 (1874)
+.+-++.|..|-||..|+-.+....++. ....+....--+..++.. + --..|+...||+||.+.++ .
T Consensus 84 ~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~---~ 160 (1549)
T KOG0392|consen 84 NDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKH---M 160 (1549)
T ss_pred HHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHh---h
Confidence 3455799999999999999998775332 111111111111111110 1 1247899999999999886 2
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
-...+...++.....+.. ..|+.|+++++.+++...---+.+...++.+++.+..+|.|.+..||..|+..+-......
T Consensus 161 ~~s~~~~~~~il~q~~~q-~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 161 DESLIKETLDILLQMLRQ-PNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred hhHhhHHHHHHHHHHHcC-cchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 233333444444333333 3789999999999886553334556888899999999999999999988888877665544
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHH-HHHHHHHcc--hhh-hHHHH-HHHHHHHHHHhhcchhHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLL-AVGELLRNT--GEF-MMSRY-REVAEIVLRYLEHRDRLVRLS 300 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~-~l~~ll~~~--~~~-~~~~~-~~i~~~ll~~~~~~~~~vr~~ 300 (1874)
.....+........+...+..... - .+. .+.+. .+.++.... -++ ..... ..+.+.++..+.|.-..+|.+
T Consensus 240 v~l~~~~i~~lv~~l~~~l~~ldd-l-~~s--~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a 315 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWSFLLELDD-L-SSS--TASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA 315 (1549)
T ss_pred HhhhHhHHHHHHHHHHHHHHHhhh-c-chh--hHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 222222222222333333332222 1 111 11111 111211100 000 11111 134556666677777788889
Q ss_pred HHHHhHhHhhhCh
Q 000196 301 ITSLLPRIAHFLR 313 (1874)
Q Consensus 301 ~~~~i~~la~~~~ 313 (1874)
++..+..+.+...
T Consensus 316 ~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 316 ALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHhcCC
Confidence 9888888776543
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0076 Score=70.43 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=88.7
Q ss_pred hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc--cchhhcHHhHHHH
Q 000196 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--FGMRQYISELMPL 733 (1874)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--~~~~~~~~~llp~ 733 (1874)
.+.+.+|.+.|+.+........++-...+++.-+..+.+.......-.|+-++++++|.|..+-. -+-.++.+.++|+
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 46788899999998876665666666666666555555433223466788999999999987533 3457889999999
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
++..+.+..+..+|..|..+|.......++- .+||-....++.+|
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~----d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGKREQYG----DQYALSWNALVTAL 622 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCCcccch----hHHhHHHHHHHHHH
Confidence 9999998888889999999998765544432 34555666666655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.27 Score=69.40 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
...|..++.+..+.|+++.|...+.++....|. ........+.+....|+ ..+|+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~ 559 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGN---EEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 445555555666666666665555555443321 13344444555555553 34555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00019 Score=92.17 Aligned_cols=220 Identities=14% Similarity=0.153 Sum_probs=147.2
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
+....|.+|+.+|..++....+ ..-++.|+|.++..++|+...||-+|.++|-+++..+.+-.+....-+..=++|.+
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 3345688898888888877554 35788999999999999999999999999999998887533222222333466666
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHH-------------cch----------------hhhHHHHHHHHHHHHHHhhcchh
Q 000196 245 QDGLGRNAPVHSIHGSLLAVGELLR-------------NTG----------------EFMMSRYREVAEIVLRYLEHRDR 295 (1874)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~-------------~~~----------------~~~~~~~~~i~~~ll~~~~~~~~ 295 (1874)
..-+.+++..-+|-+-...|..|+. +.| ...+.-...+-+.+..++.+.++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 6655553222233322223333222 111 01112222234456667778889
Q ss_pred HHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHHHHHHHHhhc
Q 000196 296 LVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIA 372 (1874)
Q Consensus 296 ~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~L~ 372 (1874)
.||++.++.|..|+.|=+.+ .-=+-++++|.+.|.+.+ .|++-|+.|.-++..||.. .. +.+++.+.++|+
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~lt 666 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLT 666 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhcc
Confidence 99999999999999763321 112568889999996543 5899999999888889874 33 345677788998
Q ss_pred CCCCCCCchhHHHHHHHHHH
Q 000196 373 PRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 373 ~~~~~~~~~a~~~l~~l~~~ 392 (1874)
|...-+-..|+.|+..|++.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHh
Confidence 87655556788999888874
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.009 Score=74.91 Aligned_cols=343 Identities=10% Similarity=0.103 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccccCcc-hhH---------HHHHHHHHHhhcccCC--ChH
Q 000196 60 GEAFSRFMDQLYDRISGLLESN-DAAENLGALRAIDELIDVALGEN-ASK---------VSKFSNYMRTVFEVKR--DRE 126 (1874)
Q Consensus 60 ~~~~~~~~~~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~~~~~-~~~---------~~~~~~~L~~~l~~~~--d~~ 126 (1874)
++-+......|.+++...+++. +...-.+.+.++-.+++-...+. ... +.++........+... |..
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 4445666666777766666543 33333444455554443321111 011 1222222222221122 468
Q ss_pred HHHHHHHHHHHHhhhC-CCcchHHHHHHHHHHH-----hhhcCCCc---chhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000196 127 ILVLASKVLGHLARAG-GAMTADEVEFQVKMAL-----DWLRGDRV---EYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1874)
Q Consensus 127 v~~~aa~~lg~l~~~~-g~~~~~~v~~~~~~~~-----~~l~~~~~---~~~r~aA~~~l~~la~~~p~~~~~~l~~il~ 197 (1874)
+...++..++.++..- .....++++......+ .-++.+.. +..+..-.++-+.++.--|+.-.|....++.
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 8888888888887752 2223334333333332 00111111 1222222233334444345555567778888
Q ss_pred HHHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000196 198 AIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1874)
Q Consensus 198 ~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1874)
.++... ...++.+|.+++.++..++.-.. .. +.+..+++.....+.+..+...+..++.++.-+..+-=--..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWP--DD----DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCC--Ch----hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 877654 45568889998888776554311 11 134455555544441111233455555554333221000011
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcCCC--CcchHH
Q 000196 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRIPA--ERDSGF 342 (1874)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~ 342 (1874)
|...++...++..+++ +.+...+...++.+....++ -+-+.++..++|.+.+..+... .|...+
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 3344455566666666 66777777777777654221 1233567788888887776544 478899
Q ss_pred HHHHHHHhhchhhh-hhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000196 343 IALGEMAGALDGEL-FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1874)
Q Consensus 343 ~alg~la~~v~~~~-~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~ 410 (1874)
.|++.+...++..+ .++++.+++.+.++|...+.+....+++++..+.+.-.+.+.+|++.+++.|++
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999874 589999999999999655554556788888888887666788899999988774
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.089 Score=65.30 Aligned_cols=231 Identities=23% Similarity=0.212 Sum_probs=118.3
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 482 ~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
+-.||.-|++|.- +.+..-+-+-+..++.+.-+.||+.|+..+-+++..-+ ..+...
T Consensus 126 ~giAL~GLS~fvT--pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---------------------eAlr~~ 182 (877)
T KOG1059|consen 126 VGLALSGLSCIVT--PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---------------------EALRPC 182 (877)
T ss_pred hhheecccccccC--chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---------------------HhHhhh
Confidence 3568888888732 12221122234577888889999988876666654221 112222
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
. +-|..-|.|+++.|..+|+.+++.|+..||...+| |.+.
T Consensus 183 F---------------------------------------prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-LAP~ 222 (877)
T KOG1059|consen 183 F---------------------------------------PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-LAPL 222 (877)
T ss_pred H---------------------------------------HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-ccHH
Confidence 2 23334567888888888999999999999876554 2222
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh---
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--- 718 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--- 718 (1874)
+..+++ .+.+++ .-..-+.+++.+.---|.+-+..++++. ..+.. ..-.+-+.+|+..+..+
T Consensus 223 ffkllt---tSsNNW-mLIKiiKLF~aLtplEPRLgKKLieplt----~li~s-------T~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 223 FYKLLV---TSSNNW-VLIKLLKLFAALTPLEPRLGKKLIEPIT----ELMES-------TVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred HHHHHh---ccCCCe-ehHHHHHHHhhccccCchhhhhhhhHHH----HHHHh-------hHHHHHHHHHHHHheeehhc
Confidence 333333 221221 1122333444443222333333333332 22221 11122233454443322
Q ss_pred -cccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000196 719 -GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1874)
Q Consensus 719 -~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~ 797 (1874)
++.+-..-+.-.+.-+...+.| ++...|=.++-+++.++..+...+.- --+.+++.|. +.++.+|..|+.+
T Consensus 288 ~g~~d~~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~-DkD~SIRlrALdL 359 (877)
T KOG1059|consen 288 SGMSDHSASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLD-DKDESIRLRALDL 359 (877)
T ss_pred cCCCCcHHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhc-cCCchhHHHHHHH
Confidence 1111111122222233333344 35677888888999888776554332 3345566664 3467899888877
Q ss_pred H
Q 000196 798 L 798 (1874)
Q Consensus 798 l 798 (1874)
+
T Consensus 360 l 360 (877)
T KOG1059|consen 360 L 360 (877)
T ss_pred H
Confidence 6
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=83.94 Aligned_cols=180 Identities=19% Similarity=0.235 Sum_probs=118.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCC-cC----ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 609 NDEDFDVREYAISVAGRLSEKN-PA----YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~~-p~----~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
.+.+.+.|..|+.-|.+++..+ +. .+.+.+++++..+...+.+. -......|+.++..++...+..+.||++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5677888888888888887776 22 23344443333333333221 23445689999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhH-HHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISEL-MPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l-lp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
+++.|+..+.+. ...++..+..|+..+....+ +.+.+ .+.+...+.+. ++..|..++..+..++...+
T Consensus 95 ~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGDS-----KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG--------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcc
Confidence 999999999975 66788888899998887654 33455 55566666655 68899999999999998888
Q ss_pred ---ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 763 ---YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 763 ---~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..+.....++.+.+.+...+.+ .+++||..+-+++..+-
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALY 205 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Confidence 3333322346788888888865 47899999999988763
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00052 Score=76.30 Aligned_cols=353 Identities=12% Similarity=0.090 Sum_probs=191.1
Q ss_pred HHHHHHHHHcCCCCch-hhHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCCh-hhhhhHHHHHhHhhcccc
Q 000196 25 ALNRILADLCTHGNPK-EGASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESNDA-AENLGALRAIDELIDVAL 101 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~-~~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~~-~~r~~~i~ai~~li~~~~ 101 (1874)
.+.++.++|.|..-+. -.|..+.+.++ .+|-++- ....+ .-.+.++.+++.+.+. --+.-|.-|+..+.++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~L---S~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLL---SKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHh---ccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 5688888898864222 23655566555 5555543 22222 1245667777744222 234556777777765532
Q ss_pred CcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHHhhhcCCCc-chhHHHHHH
Q 000196 102 GENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE--FQVKMALDWLRGDRV-EYRRFAAVL 175 (1874)
Q Consensus 102 ~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~~~l~~~~~-~~~r~aA~~ 175 (1874)
.+ +++ ....+.+-.++. +.+.+|++.|.|+||.+|..+.. --|+|- ..++.++..+.+... -.--.-|.+
T Consensus 148 ~Q--TkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 148 QQ--TKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred cc--eEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 21 111 112233333442 45789999999999999864211 122221 134455555554332 122234678
Q ss_pred HHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCC
Q 000196 176 ILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~ 252 (1874)
.|+-++.+ -|.---..+.+.+|.+.+.+...+++|-..|++|++-+.+. +.+..+.. ..+-..+...|..++
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-----~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-----PNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-----cHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 88889987 34333567788899998988888888888999999865431 11111111 011222333333332
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1874)
..++.-++..+|-++.+....-+--+. ..+..+...++++...+|+.+|++|..+.+-..++. +..+ ..+.|.|..
T Consensus 299 -a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi-qavid~nliPpLi~ 376 (526)
T COG5064 299 -AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI-QAVIDANLIPPLIH 376 (526)
T ss_pred -ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH-HHHHhcccchHHHH
Confidence 334455555666555433211000000 012233334678888999999999999876555432 2222 356677777
Q ss_pred hhcCCC--CcchHHHHHHHHHhhc-h-hhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 331 VLRIPA--ERDSGFIALGEMAGAL-D-GELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 331 ~L~~~~--~R~~a~~alg~la~~v-~-~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
.|...+ .|-.|+-++.+..... + .++..|+ ...+..+...|.-...+...-++.||..+.+.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 776543 4556777777743221 1 1233444 23445555555333333445578888877653
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00028 Score=81.04 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=124.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhc-----CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENA-----STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~-----p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1874)
++.+|..|..|+.-|+.+..+. +..+.+++.++++.|...+.|....|-..|+.++..+...+.. ....+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 6788999999999999998876 3345566777778999999999999999999999888876653 234557
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i-~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..++|.+...+.+++ ..++.+|..+|..++..++ +..++ ...+.....++++.+|..++..+..+....+
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 888999998888875 5778898889999988554 11233 4455566789999999999988888765444
Q ss_pred hhHHH-HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000196 314 DRFVT-NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 314 ~~f~~-~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~ 355 (1874)
..+.. .+++.+.+.+...+.+++ .|..|-.++..+....|+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 33322 245788888888887654 6999999999998888874
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.16 Score=61.19 Aligned_cols=260 Identities=15% Similarity=0.072 Sum_probs=127.8
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchH
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~ 148 (1874)
.+.=.|.+++++.|.--|++--.||..|-.+..+. -+.. +-+.+=+....+..+.-.|-+.|-+.... ....+
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv--lm~t---ssiMkD~~~g~~~~~kp~AiRsL~~Vid~--~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV--LMGT---SSIMKDLNGGVPDDVKPMAIRSLFSVIDG--ETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh--hHHH---HHHHHhhccCCccccccHHHHHHHHhcCc--chhhh
Confidence 45556788999999999998888999886664221 1111 11111111222334444555555544331 11111
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhH---------HHHHHHHHH
Q 000196 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV---------RERAVEALR 219 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~V---------R~aA~~al~ 219 (1874)
++..++.++ =++...+|-||+..-.-|--+.-.....+.+..-++++..-.-|+..= --.-..|+|
T Consensus 138 -~er~l~~a~----Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalG 212 (898)
T COG5240 138 -FERYLNQAF----VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALG 212 (898)
T ss_pred -HHHHhhhhc----cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHH
Confidence 122233222 133445566655432222222223445566666666655333332100 000122333
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 220 ~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
-+-+ +. |-. +...-.+.+.+..+......||.++.+....+...+- .+.+..+.+.+-..+.++-.+|..
T Consensus 213 lLyq-~k-r~d-------kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k~emV~l 282 (898)
T COG5240 213 LLYQ-SK-RTD-------KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDKFEMVFL 282 (898)
T ss_pred HHHH-Hh-ccc-------HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCcchhhhH
Confidence 2111 11 100 0011122233333322233566665554443311100 012333444555666777888988
Q ss_pred HHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000196 300 SITSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 300 ~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~ 354 (1874)
.+..++-+++.-. ..+ ++++++..|...|+..+ .|-.|++.|..+|+..+.
T Consensus 283 E~Ar~v~~~~~~nv~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 283 EAARAVCALSEENVGSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 8888877776533 333 45778888888888765 478999999999987664
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.024 Score=70.68 Aligned_cols=232 Identities=16% Similarity=0.181 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh-----cCCchhHH-HHHHHHHHHHHHHHhhcchhhHHHHHH-HH
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-----RDPTLAVR-ERAVEALRACLRVIEKRETRWRVQWYY-RM 240 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l-----~D~~~~VR-~aA~~al~~~~~~i~~r~~~~~~~~~~-~i 240 (1874)
+.|=+|=-++..+-+.-+..+.|++-.++....... .|-+..++ +|...|.+.....+.+.- .-.+|+. .+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~--dF~~Wl~~~l 489 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL--DFDKWLQEAL 489 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHhh
Confidence 455555555555555555555555555554333333 23333444 555666666555444211 2345764 45
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHhHhHh---hhChhh
Q 000196 241 FEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHR-DRLVRLSITSLLPRIA---HFLRDR 315 (1874)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~-~~~vr~~~~~~i~~la---~~~~~~ 315 (1874)
+|++...- ++.+-.|...+..+|.=+. ...+...+ -++...+.++++. +..||-++..++..+. .|.++.
T Consensus 490 lpEl~~~~--~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 490 LPELANDH--GNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred CHHhhhcc--cchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 66665211 1123455566667776655 22233333 2344555666665 7778999888888775 477888
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--CchhHHHHHHHH
Q 000196 316 FVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIA 390 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~---~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~~a~~~l~~l~ 390 (1874)
|.+ |++.+...+...++.. +.|...+..+|.+...+++.+.||...+++.+-.--......+ +...+..+-.++
T Consensus 565 Flp-~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 565 FLP-YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 876 8888888888888643 3588999999999999999888998887766544332222222 345677888899
Q ss_pred HHhCC---CchHHHHHHHHH
Q 000196 391 RAMGP---VMEPHVRGLLDI 407 (1874)
Q Consensus 391 ~~~g~---~~~p~l~~ll~~ 407 (1874)
.++|. .+-|++-.+++.
T Consensus 644 ~alg~qS~~~~~fL~pVIel 663 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIEL 663 (978)
T ss_pred HHhccCCccchHHHHHHHHH
Confidence 99996 466777666654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.9e-05 Score=70.23 Aligned_cols=88 Identities=20% Similarity=0.078 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCc
Q 000196 128 LVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1874)
Q Consensus 128 ~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~ 207 (1874)
++.+..+|...+..-|....++++..++.++..+ ++.+++.|++|+..|..++..+...+.+|+++|++.++..+.|++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4555666666666655567888999999998877 467778999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 000196 208 LAVRERAVE 216 (1874)
Q Consensus 208 ~~VR~aA~~ 216 (1874)
+.||.+|.-
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999998843
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.029 Score=70.50 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA 184 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~ 184 (1874)
+.+++..++-+.+++. ..|+-+++.|+-|+-|+... .+++++..+...-..|. +++-..=.+++.++-++++..
T Consensus 137 ~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK----~P~l~e~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRK----VPDLVEHFVIAFRKLLC-EKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHc----CchHHHHhhHHHHHHHh-hcCCceeeeHHHHHHHHHhcC
Confidence 4566777778888886 47899999999999999985 66777777777766664 344456678999999999987
Q ss_pred Ccc---chhchHHHHHHH---HH----------hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 185 STV---FNVHVAEFVDAI---WV----------ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 185 p~~---~~~~l~~il~~i---~~----------~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
|+. |...+++++..+ .. ++.||--.| .... +++++.+.+. .-.+.+..++.++...-
T Consensus 211 ~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi--~iLr----lLriLGq~d~-daSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 211 PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI--RILR----LLRILGQNDA-DASDLMNDILAQVATNT 283 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH--HHHH----HHHHhcCCCc-cHHHHHHHHHHHHHhcc
Confidence 764 333333333222 11 122333333 2333 2333332222 23344555555554433
Q ss_pred cCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000196 249 GRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1874)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~l-l~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1874)
.++. .++=.+|-+.++ ...=...+-+..+.-.+ -+++.+++.-+|-.+++.+.++...++.... +-=.
T Consensus 284 dssk-----N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~ 353 (866)
T KOG1062|consen 284 DSSK-----NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRS 353 (866)
T ss_pred cccc-----cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHH
Confidence 2221 111112222111 11111112222222222 2334566777788888888877777665322 2234
Q ss_pred HHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHH
Q 000196 327 HILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGL 404 (1874)
Q Consensus 327 ~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~l 404 (1874)
.++.||+.++ -|..|++.+-.+...- ++ ..+++.+.+.|.....+.......-+..+++.+.|+=.=|++..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~--Nv----~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNES--NV----RVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhccc--cH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5667887765 3666777665554332 22 33444444444222211122333333344444444322255544
Q ss_pred HHHHHhcC--CCHHHHH-HHHHHHHhCCCChHHHHHHHHHHHH
Q 000196 405 LDIMFSAG--LSTTLVD-ALEQITVSIPSLLPTIQDRLLDCIS 444 (1874)
Q Consensus 405 l~~ll~~~--ls~~l~~-~l~~i~~~~p~l~~~i~~~ll~~l~ 444 (1874)
+.-+-..| .+++... .++-|+..++++-.+..-+++..++
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS 470 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 44333344 4555544 3445556667776677777766654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.017 Score=71.49 Aligned_cols=375 Identities=16% Similarity=0.171 Sum_probs=186.1
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhh----cCCCC--cchHHHHHHHHHhhchhhhhhhhHHHH
Q 000196 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL----RIPAE--RDSGFIALGEMAGALDGELFHYLPTIT 364 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L----~~~~~--R~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1874)
-.++.++++...--+-.+=+.+++.- -++ =|-.+.+.. +.|++ |+..++-+..+ .+ ...++++|
T Consensus 67 ps~~~elKKLly~ywE~vPKt~~dgk---l~~-EMILvcna~RkDLQHPNEyiRG~TLRFLckL----kE--~ELlepl~ 136 (948)
T KOG1058|consen 67 PSRNHELKKLLYYYWELVPKTDSDGK---LLH-EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL----KE--PELLEPLM 136 (948)
T ss_pred ccCchHHHHHHHHHHHHccccCCCcc---cHH-HHHHHHHHHhhhccCchHhhcchhhhhhhhc----Cc--HHHhhhhH
Confidence 35667777765433332222222110 111 133334444 34443 77776655443 21 23567888
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHH-HHHHHHH---------------HHhC
Q 000196 365 SHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTL-VDALEQI---------------TVSI 428 (1874)
Q Consensus 365 ~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l-~~~l~~i---------------~~~~ 428 (1874)
+.++.+|...+.-++..|+-|+..|-+. ++.+.|..++++...+....++.. +.|+-.+ .+.+
T Consensus 137 p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi 215 (948)
T KOG1058|consen 137 PSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQI 215 (948)
T ss_pred HHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhc
Confidence 8999999776665666777788877766 567778888888776654433332 2222222 2233
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcc-hhhHHHHH
Q 000196 429 PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL-LEFARDSV 507 (1874)
Q Consensus 429 p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l-~~~v~~~~ 507 (1874)
|.+.+.++--+.+.|..+- ...... ..|+ .|+
T Consensus 216 ~~~~~~LqlViVE~Irkv~----------------------------------------------~~~p~~~~~~i-~~i 248 (948)
T KOG1058|consen 216 PSFNDSLQLVIVELIRKVC----------------------------------------------LANPAEKARYI-RCI 248 (948)
T ss_pred cCccHHHHHHHHHHHHHHH----------------------------------------------hcCHHHhhHHH-HHH
Confidence 3333322222222221110 000000 0122 244
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1874)
..++.+.++.|+-.||.++..+.. ..+.+......++..+..++|-.+..-++.-|.+
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~----------------------~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSN----------------------DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccC----------------------CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 455655566666666554433321 1122333333444555566666665555444421
Q ss_pred CCCc-chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC-cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 588 NRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 588 ~~~f-~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
-..- ...+ .+.+--++..++.++.+||..++.+.-.|+... -..+.-.|.+-+...-.. +.. ...+-|. +
T Consensus 307 l~~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d-~~~~yRq----l 378 (948)
T KOG1058|consen 307 LKALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESD-DNGKYRQ----L 378 (948)
T ss_pred HhhhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccc-cchHHHH----H
Confidence 0000 0001 122333445678899999999999877776654 222333333322211111 111 1111133 3
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|..-+..|.-.+..+...+++.++..+.|. ++.....++.-+.+..+..+..- ..++..+++.+..-.+..
T Consensus 379 Liktih~cav~Fp~~aatvV~~ll~fisD~-----N~~aas~vl~FvrE~iek~p~Lr----~~ii~~l~~~~~~irS~k 449 (948)
T KOG1058|consen 379 LIKTIHACAVKFPEVAATVVSLLLDFISDS-----NEAAASDVLMFVREAIEKFPNLR----ASIIEKLLETFPQIRSSK 449 (948)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhCchHH----HHHHHHHHHhhhhhcccc
Confidence 333333444445567788999999999985 55555555665666555443321 123334444443333455
Q ss_pred hHHHHHHHHHHHHhhcc
Q 000196 746 KREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~ 762 (1874)
....|+|.+|..|+..+
T Consensus 450 i~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 450 ICRGALWILGEYCEGLS 466 (948)
T ss_pred cchhHHHHHHHHHhhhH
Confidence 66789999998876654
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.082 Score=70.94 Aligned_cols=132 Identities=17% Similarity=0.273 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch-hhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1874)
.+.++..+..++.. ..+|...+|..++.+|+.-...|+ .|+.+++-..+-.-++|.+..||++|++++|+.+-.+|..
T Consensus 811 ~~sfD~yLk~Il~~-l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSV-LGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHhhHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 45577777666654 569999999999999963223344 3566777788888899999999999999999999999877
Q ss_pred cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
+..+..++ ...+.+ +...+|..+++.+.++++..|++-+ +..+.-.++.+..|+
T Consensus 890 ~~qyY~~i----~erIlD--tgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 890 IFQYYDQI----IERILD--TGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHHHHH----HhhcCC--CchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccc
Confidence 65555543 333333 3567888999999999998876421 234444455555554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0032 Score=74.65 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHh-hcc-cc
Q 000196 24 DALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL-IDV-AL 101 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~l-i~~-~~ 101 (1874)
+.+...+..|..++...|.++ |..++.........+++......|...+.+.++.....++.-|..++.-| +.+ .+
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~a--L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAA--LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 347778888877654333333 77777777788888888888888999888988876667777777766666 332 11
Q ss_pred CcchhHHHHHHHHHHhhcccCC-ChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHH--hhhcCCC---------cc
Q 000196 102 GENASKVSKFSNYMRTVFEVKR-DREILVLASKVLGHLARAGGAMTADEVE--FQVKMAL--DWLRGDR---------VE 167 (1874)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~~~-d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~--~~l~~~~---------~~ 167 (1874)
.+.......+.+.|..++.... .+.++..++.+||-++..++.-..+... ..++.++ ..++.++ ..
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 2345666778888988886422 3466677778999887765544322221 2333221 1222222 24
Q ss_pred hhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 168 YRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
...-||+..|+-|+..+|. .+..++...+|.+...|..++..||-||.+++.-+.+...
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999887 4667788899999999999999999999999998877654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.26 Score=61.39 Aligned_cols=348 Identities=16% Similarity=0.233 Sum_probs=174.4
Q ss_pred hhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000196 274 FMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1874)
Q Consensus 274 ~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~ 350 (1874)
|+.|.+. ++...|+.++++..+.||+-++.++-.+.---| ..+..++|-|..-|..++ .-++|...+.++|+
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 5556554 577889999999999999988877765532112 246778888888888765 45789999999998
Q ss_pred hchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000196 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIP 429 (1874)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~~~p 429 (1874)
.-++...++-|.+...+...-.++ .-...+..||.|+- +.|-+. .+++++.+- .....+
T Consensus 211 KnPknyL~LAP~ffkllttSsNNW---mLIKiiKLF~aLtp-----lEPRLgKKLieplt~l------i~sT~A------ 270 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYKLLVTSSNNW---VLIKLLKLFAALTP-----LEPRLGKKLIEPITEL------MESTVA------ 270 (877)
T ss_pred hCCcccccccHHHHHHHhccCCCe---ehHHHHHHHhhccc-----cCchhhhhhhhHHHHH------HHhhHH------
Confidence 888765555555554443221111 11234445554332 222221 233332210 000101
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhh
Q 000196 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509 (1874)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~ 509 (1874)
..-+.+.+..++++ .+..++ .+..+.+.+|.+-|+.|
T Consensus 271 ------mSLlYECvNTVVa~-s~s~g~-------------------~d~~asiqLCvqKLr~f----------------- 307 (877)
T KOG1059|consen 271 ------MSLLYECVNTVVAV-SMSSGM-------------------SDHSASIQLCVQKLRIF----------------- 307 (877)
T ss_pred ------HHHHHHHHHHheee-hhccCC-------------------CCcHHHHHHHHHHHhhh-----------------
Confidence 01122233323333 111000 01334566676666654
Q ss_pred hccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCC
Q 000196 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNR 589 (1874)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~ 589 (1874)
+++.++..+.-+..++.+++...+. +.+.-.++ +-.+..|.|+.||..++.-+.+--
T Consensus 308 -iedsDqNLKYlgLlam~KI~ktHp~------------------~Vqa~kdl----IlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 308 -IEDSDQNLKYLGLLAMSKILKTHPK------------------AVQAHKDL----ILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -hhcCCccHHHHHHHHHHHHhhhCHH------------------HHHHhHHH----HHHHhccCCchhHHHHHHHHHHHh
Confidence 4555667776677777777654331 11222333 233568999999999988774100
Q ss_pred CcchhhccHhhHHHHHHHhCCCCH-HHHHH-HHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 590 GFDDFLAQADCLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 590 ~f~~~L~~~~~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
.-+. -.++++.|+..+.+.+. ..|.. ...+++-.+..+-.++.. |. ..+..+.+|..-++ .+.-..-+..+-
T Consensus 365 skkN---l~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~Itd-FE-WYlsVlveLa~l~~-~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 365 SKKN---LMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITD-FE-WYLSVLVELARLEG-TRHGSLIAEQII 438 (877)
T ss_pred hhhh---HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhh-HH-HHHHHHHHHHhccc-cchhhHHHHHHH
Confidence 0000 13566766655544333 44543 334454444444333321 11 11222323322211 111111222333
Q ss_pred HHHHhCccccccchHHHHHHHHH--HhhccCCC-CCChhHHHHHHHHHHHHHHhc
Q 000196 668 CLIRNCERLIRPYIAPIHKALVA--RLLEGTGI-NANNGIISGVLVTVGDLARVG 719 (1874)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~--~l~~~~~~-~~~~~v~~~~~~~l~~La~~~ 719 (1874)
+++-.. +.++||.-..+..|+. .+...... .....|..+++.++|+.++..
T Consensus 439 Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v 492 (877)
T KOG1059|consen 439 DVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV 492 (877)
T ss_pred HHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence 333222 3567776666666555 11111000 124567778888888887754
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.009 Score=74.34 Aligned_cols=253 Identities=17% Similarity=0.250 Sum_probs=155.0
Q ss_pred HHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh---CCCCCCCccchhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHH
Q 000196 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQ 932 (1874)
Q Consensus 857 ~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~---~~~~~~~l~~ilp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~ 932 (1874)
.+-.+.+..|+|...-...-++++++...+.+. ...+.||++.+.-.+...+... .-+-|-.++..+++++..+++
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344567777888754445556777777777663 3456888887777777666543 223577888999999999999
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhh-H---
Q 000196 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTY-V--- 1008 (1874)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~-~--- 1008 (1874)
+|+||...|+..+-..|...... +-++..++.++..++.++|..=.+..|-++|-+--.. |.. +++... .
T Consensus 606 ~I~P~~~~ivq~lp~LWe~s~~e----~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~-D~~-sP~hv~L~EDg 679 (978)
T KOG1993|consen 606 HIAPYASTIVQYLPLLWEESEEE----PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST-DPS-SPEHVYLLEDG 679 (978)
T ss_pred hhhHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc-CCC-CCceeehhhhH
Confidence 99999999999999999864311 2345578889999999999876666555666432222 222 222111 1
Q ss_pred HHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHH--HHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHH
Q 000196 1009 LDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIR--RAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRK 1086 (1874)
Q Consensus 1009 ~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr--~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~ 1086 (1874)
..+-.++......+.+-+-.++|-++..++.+ ...+| -..+.+..-|-..+=+..|...|...+.+.+.+-..+--.
T Consensus 680 meLW~~~L~n~~~l~p~ll~L~p~l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~ 758 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTPELLLLFPHLLYIIEQS-TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQ 758 (978)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 12222222222345555556778777777654 22222 2222222222222334568888888888888654444455
Q ss_pred HHHHHHHHHHHH---hcc-ccccchhhHHHHHHh
Q 000196 1087 DAVDALCCLAHA---LGE-DFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1087 ~al~~L~~l~~~---~g~-~f~~~ip~i~~~l~~ 1116 (1874)
+.+.+++.+++. +|. -|.+-+|.+...+..
T Consensus 759 avLkiveili~t~~il~~~~~~~~L~~lf~~I~~ 792 (978)
T KOG1993|consen 759 AVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAE 792 (978)
T ss_pred HHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHh
Confidence 666666666554 232 344556666666643
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00045 Score=77.55 Aligned_cols=406 Identities=19% Similarity=0.174 Sum_probs=208.9
Q ss_pred HHHHHHHHHhhhcCCcCccc--hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 616 REYAISVAGRLSEKNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
|+++...++++-..+.-.+. ..+| .++.+.+++....+| .|+-.+..+.++.-. .--....+.++..+.
T Consensus 25 rEav~~ll~~lEd~~~i~fyS~~plr-----altvL~ySDnlnlqr-saalafAeitek~vr---~Vsres~epvl~llq 95 (550)
T KOG4224|consen 25 REAVADLLNRLEDRNAISFYSASPLR-----ALTVLKYSDNLNLQR-SAALAFAEITEKGVR---RVSRESNEPVLALLQ 95 (550)
T ss_pred HHHHHHHHHhhcccccccccCCCccc-----hheeeeeccccccch-HHHHHHHHHHHHHHH---HhhhhhhhHHHHHHh
Confidence 56666677776665533222 1133 345566762333334 344455555543211 111122222333333
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhccc-chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccch
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p 772 (1874)
.. ++.+..++..++|.+|..++. .+.--+.-+=|.+.+++.|. .++|.+|++++..++..-......- ..
T Consensus 96 s~-----d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA--~s 166 (550)
T KOG4224|consen 96 SC-----DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIA--RS 166 (550)
T ss_pred Cc-----chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhh--hc
Confidence 32 566777788889988887764 34444556677888888875 5788899999998886643332111 11
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 773 ~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
.-+..+.. |.+.++-.+++.+.-.+-.+ .-... +.. ....
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnm---Ths~E--nRr----------~LV~------------------------ 206 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNM---THSRE--NRR----------VLVH------------------------ 206 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHh---hhhhh--hhh----------hhhc------------------------
Confidence 22444445 33444556666654333222 11100 000 0000
Q ss_pred chHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh--CCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000196 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~--~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1874)
.-.++.|+..++...+ ..+..++.|+..|.-+- .....+-=|+++|.++..+++.++.++..+-.+|+.+..-.
T Consensus 207 ---aG~lpvLVsll~s~d~-dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 207 ---AGGLPVLVSLLKSGDL-DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred ---cCCchhhhhhhccCCh-hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 0011223333332222 12234555555554321 11223444679999999999999888877666666554321
Q ss_pred HHhHHHh-----HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCch
Q 000196 931 RQHIRKY-----LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDY 1005 (1874)
Q Consensus 931 ~~~i~~y-----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~ 1005 (1874)
.+.++. +|-++.++ +.+..| +...-+.||..++..=..+----=.-++.+++++|+-.| ..
T Consensus 283 -~Yq~eiv~ag~lP~lv~Ll----qs~~~p------lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d---nE 348 (550)
T KOG4224|consen 283 -EYQREIVEAGSLPLLVELL----QSPMGP------LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD---NE 348 (550)
T ss_pred -hhhhHHHhcCCchHHHHHH----hCcchh------HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC---ch
Confidence 122222 23333333 332211 011123333333322111111111224556777786433 23
Q ss_pred hhHHHHHHHHHHHhcchhhhhhh-----hHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchh--HhHHHHHHHHhC
Q 000196 1006 TYVLDILHTLEVFGGTLDEHMHL-----LLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLD 1078 (1874)
Q Consensus 1006 ~~~~~il~~l~~~g~~~~~~~~~-----ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~ 1078 (1874)
+..+....++-.++.+.+.-... -+|-+..++.. .+.+++...-.++..++..-+...++ +.|++.|+..+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC
Confidence 34455555555544333222222 24555555543 47888888888999988775544432 357788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 000196 1079 GKNDELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1079 ~~~~~l~~~al~~L~~l~~~ 1098 (1874)
+.+.+++.++..+|..+...
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccchhhcccHHHHHHhhhhh
Confidence 88999999999999888754
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.8e-05 Score=66.16 Aligned_cols=54 Identities=28% Similarity=0.255 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 167 ~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
|..|.+|+.+|+.++++++..+.++++.+++.+...|.|+++.||.+|+.||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 357999999999999999999999999999999999999999999999999985
|
... |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.19 Score=62.12 Aligned_cols=362 Identities=16% Similarity=0.174 Sum_probs=188.3
Q ss_pred HHHHHHHHHcCCC--C-chhhHHHHHHHHHHHHH--hhhChHHHHHHHHHHH-----------HH--HHhhhcCCChhhh
Q 000196 25 ALNRILADLCTHG--N-PKEGASLALRKHIEEQA--RDLGGEAFSRFMDQLY-----------DR--ISGLLESNDAAEN 86 (1874)
Q Consensus 25 ~~~~~~~~L~s~~--~-~~~~aa~~l~~~v~~~~--~~~~~~~~~~~~~~l~-----------~~--i~~l~~s~~~~~r 86 (1874)
-+.-++.++++-. + ++.+.-.||..+=...= +-+++-+=++|.-.+. .. -.+|++|+...+|
T Consensus 12 GL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEK 91 (938)
T KOG1077|consen 12 GLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEK 91 (938)
T ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHH
Confidence 3666778886532 2 32346666666542221 1244444445543331 11 1367889999999
Q ss_pred hhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCC
Q 000196 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDR 165 (1874)
Q Consensus 87 ~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~ 165 (1874)
.-|-+.+..|+.-. ...++-..+-+++=+. +.|+.-+-.|..++|.+ ||-...+-+...++.+ |. ++.
T Consensus 92 qIGYl~is~L~n~n----~dl~klvin~iknDL~-srn~~fv~LAL~~I~ni---G~re~~ea~~~DI~Kl---LvS~~~ 160 (938)
T KOG1077|consen 92 QIGYLFISLLLNEN----SDLMKLVINSIKNDLS-SRNPTFVCLALHCIANI---GSREMAEAFADDIPKL---LVSGSS 160 (938)
T ss_pred HHhHHHHHHHHhcc----hHHHHHHHHHHHhhhh-cCCcHHHHHHHHHHHhh---ccHhHHHHhhhhhHHH---HhCCcc
Confidence 99999999998553 2223323445666554 45777777777777654 3333333333344433 33 344
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH------------
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR------------ 233 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~------------ 233 (1874)
..-.|..|.+++-.|-...|+.+.+ ......|+..|.|.+..|-.||..-+..+.. +.+...
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk----~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVK----KNPESYKTCLPLAVSRLS 234 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHH----cCCHHHhhhHHHHHHHHH
Confidence 4456666666666777788887654 2455566677888887776666554333221 221111
Q ss_pred -------------------HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh---------------------
Q 000196 234 -------------------VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE--------------------- 273 (1874)
Q Consensus 234 -------------------~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~--------------------- 273 (1874)
..|+..=+-.+++.+.-+.|.-++..-..++..++....+
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 1232211111111121111122222222333333332110
Q ss_pred -------hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHH
Q 000196 274 -------FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFI 343 (1874)
Q Consensus 274 -------~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---R~~a~~ 343 (1874)
--..-+.+-|..+..++.+++.-+|-.+++.+-.+|.. +|....+..-...+++.|+.+++ |..|++
T Consensus 315 ~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 01122333455556666777777777777777666653 22221222223444455553433 556666
Q ss_pred HHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q 000196 344 ALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412 (1874)
Q Consensus 344 alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ 412 (1874)
.|=.|+..-. ...|++.+.++|...+...+++...=.+.|++.+..+..=|+..+++.+--.|
T Consensus 392 LLY~mcD~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 392 LLYAMCDVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHhchhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 5555543222 24455556666654433334555556667888888887778888887766554
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.56 Score=62.20 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHH-hcchhhhhhhhHHHHHHhhcCCCcHH
Q 000196 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF-GGTLDEHMHLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 966 ~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~-g~~~~~~~~~ilp~l~~~~~~~~~~~ 1044 (1874)
-+.+..+++-.+++.+.+ +-+.+|.++...... ..........|+..+ .....+.+..++..++.++.......
T Consensus 796 s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~----~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~ 870 (1549)
T KOG0392|consen 796 SFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI----HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFV 870 (1549)
T ss_pred hHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHh
Confidence 455566666677777877 666777777666542 333444445555443 23345666666777777776544444
Q ss_pred HHHHHHHHHHhhccc--ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchh-hHHHHHHhCCCCc
Q 000196 1045 IRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIP-SIHKLLLKHRLRH 1121 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip-~i~~~l~~~~~~~ 1121 (1874)
-|..|.+.+..+... ..+.+|..-++.+|.+.+.+....+|.++-.++..++.-++-.-.++=| .+.+-|...+
T Consensus 871 ~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~k--- 947 (1549)
T KOG0392|consen 871 RRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASK--- 947 (1549)
T ss_pred hhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhH---
Confidence 566666677777665 5677899999999999999888899999999999998887655545544 5556665532
Q ss_pred hhHHHHHHHHhcC
Q 000196 1122 KEFEEIEGRLRRR 1134 (1874)
Q Consensus 1122 ~~~~~~~~~~~~~ 1134 (1874)
+++.+.++.+.++
T Consensus 948 e~erkFLeqlldp 960 (1549)
T KOG0392|consen 948 EEERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHHhcCc
Confidence 3444455555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.41 Score=64.07 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=54.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
-+-+.|+|++|+..|++.+...+++ .....+-.|+..+|+|+.....+...... +++.. ......+.+...+|+
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-~p~~~-~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALEL-DPDYS-KALNRRANAYDGLGK 209 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCCH-HHHHHHHHHHHHcCC
Confidence 4678899999999999988755442 34567778999999998777666543321 22221 122345678888999
Q ss_pred hhhHHHH
Q 000196 1443 WDQMAEY 1449 (1874)
Q Consensus 1443 Wd~~~~~ 1449 (1874)
|+.-...
T Consensus 210 ~~eA~~~ 216 (615)
T TIGR00990 210 YADALLD 216 (615)
T ss_pred HHHHHHH
Confidence 9875543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0074 Score=78.37 Aligned_cols=297 Identities=14% Similarity=0.098 Sum_probs=173.4
Q ss_pred HHHHHhhhcC-CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCc----
Q 000196 71 YDRISGLLES-NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM---- 145 (1874)
Q Consensus 71 ~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~---- 145 (1874)
...+...+++ ...+.|.+|+..+..|-..- ....++-|..+|+..++. +.+.+|+..|.+++-++...-...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 3334455554 45667888888887775442 345678899999999996 568899999999999887642222
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH-HHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA-IWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~-i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
.--|++.+++.+-..+.+......|.|=...|..||..+-..+ ..-... .-..+.||+.+- +.+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl----e~~q~~~~~g~~n~~nset---~~~-------- 565 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL----ELTQELRQAGMLNDPNSET---APE-------- 565 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH----HHHHHHHhcccccCccccc---ccc--------
Confidence 2225666666666655554666788887777888887654432 111111 111245665530 111
Q ss_pred HhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHH
Q 000196 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 225 i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
........+.+..+-+....-+.++ +.-++.+=+..+..|.. =|...+-.+ ++..+..++++++...|.+-.+
T Consensus 566 --~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 566 --QNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred --cccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHHh
Confidence 0111111122222222222233444 34556664445444433 122222222 4456778889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCch
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~ 381 (1874)
.|+-+|.|-+..-++.| ++|+|.+.|.+.++ -..|+.|+.-+... |---++++-+|++.+...|..++.=.+..
T Consensus 640 sI~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 640 SIVGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred hccceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHH
Confidence 99999888776545545 78888888877654 24566666665532 21123666666666665554332222346
Q ss_pred hHHHHHHHHHHhCC
Q 000196 382 ALACVGNIARAMGP 395 (1874)
Q Consensus 382 a~~~l~~l~~~~g~ 395 (1874)
++..+..+++.++.
T Consensus 716 ~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 716 VLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHHhhhhh
Confidence 67777777776664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.29 Score=70.36 Aligned_cols=386 Identities=19% Similarity=0.173 Sum_probs=204.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhhhhh---------
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELDVQL--------- 1359 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~~~~--------- 1359 (1874)
..+......+.|..|+.+++...... ++..+..-.|..+|.+.|+.+.+...++.+.. ..+...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 34667777888999998888776532 34456777899999999999999888875432 111100
Q ss_pred ---------cHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHH
Q 000196 1360 ---------KESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMA 1430 (1874)
Q Consensus 1360 ---------~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~ 1430 (1874)
...-+.+.|++++|...|++.+...++. .....++-.++.+.|+|+.-....+..... ++.... +
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-~p~~~~--a 421 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRM-DPGNTN--A 421 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH--H
Confidence 0112457899999999999988765432 345667778899999998776665543211 111100 0
Q ss_pred HHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhh
Q 000196 1431 PMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSE 1510 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~E 1510 (1874)
.......+..++++....++..++... .+++.. +.+.+ ....+..
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~----------------------~~~~~~---------~~~~l----~~~~~~~ 466 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQ----------------------RRSIDD---------IERSL----QNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHH----------------------HHHHHH---------HHHHh----hhhHHHH
Confidence 111111233345555444444332100 000000 00000 0000000
Q ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHH
Q 000196 1511 LEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARS 1590 (1874)
Q Consensus 1511 leEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~ 1590 (1874)
+-++ +... + +.+.-...+ +..+ -+.| ++...+...+.+..+.|+++.|..
T Consensus 467 ~a~~--~~~~--g------~~~eA~~~~--------------~~Al-----~~~P-~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 467 QAEA--LENQ--G------KWAQAAELQ--------------RQRL-----ALDP-GSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHH--HHHC--C------CHHHHHHHH--------------HHHH-----HhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 0000 0 000000111 1111 1122 235566677777777777777777
Q ss_pred HHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC--------c-----------
Q 000196 1591 TLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP--------V----------- 1651 (1874)
Q Consensus 1591 ~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~--------~----------- 1651 (1874)
.+.++....|. .+...+..+.++...|+ ..+|+..++.+...-.... .
T Consensus 517 ~l~~al~~~P~----------~~~~~~a~al~l~~~~~---~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 517 LMRRLAQQKPN----------DPEQVYAYGLYLSGSDR---DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHcCCC----------CHHHHHHHHHHHHhCCC---HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 77776654432 34555666666655553 4566666554321000000 0
Q ss_pred -cccc--cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1652 -IQSA--ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1652 -~~~~--~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
..+. .-..... ...-....++.+|.|..+. ...++.+..|+++++.+|++..+|..+|......
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--- 650 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQR------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--- 650 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 0000 0000000 0001123466788887664 4689999999999999999999999998764431
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
+ -...|++.|-+.+... ........++-.+|..-|...+..+.+++.+..
T Consensus 651 ----g-------~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 651 ----G-------DLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ----C-------CHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 1 2236677776666543 223344556677888888887777666666544
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.046 Score=69.37 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=108.0
Q ss_pred ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
.++..+-..|.+.+...+.++.....-|..+..+-.+++..+..-.+.++..++..-..=- ...++....++...+
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~----S~~n~ql~~Tss~~i 533 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL----SAPNPQLLSTSSDLI 533 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc----ccCChhHHHHHHHHH
Confidence 3445555556666655443322233345566778888988887777776666554433211 113677888888999
Q ss_pred HHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCC-CCHHHH
Q 000196 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTR 791 (1874)
Q Consensus 713 ~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr 791 (1874)
|.++...++. .-|+...+|.+++.|... +.-..|+.+|.++|+.+...+.||.+ +++..+-..+.+. .....|
T Consensus 534 gs~s~~l~e~-P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d--~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 534 GSLSNWLGEH-PMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD--QFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHHhcC-CcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH--HHHHHHHHHhcccccCchHH
Confidence 9998876653 236677788888888632 34557888899999999999999986 6788887777433 245788
Q ss_pred HHHHHHHHHh
Q 000196 792 REVLKVLGIM 801 (1874)
Q Consensus 792 ~~al~~lg~l 801 (1874)
...++++|-+
T Consensus 608 ~klm~sIGyv 617 (982)
T KOG2022|consen 608 LKLMKSIGYV 617 (982)
T ss_pred HHHHHHHHHH
Confidence 8888998875
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.043 Score=67.28 Aligned_cols=103 Identities=22% Similarity=0.165 Sum_probs=77.6
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc------
Q 000196 115 MRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF------ 188 (1874)
Q Consensus 115 L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~------ 188 (1874)
|-.+.. +.|..|+..|.+++=.|.+ |.. +-....+++.+.+. |..+..|.||+.++...+..+|...
T Consensus 203 l~~~~~-~~D~~Vrt~A~eglL~L~e--g~k---L~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEH-DQDFRVRTHAVEGLLALSE--GFK---LSKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhc-CCCcchHHHHHHHHHhhcc--ccc---ccHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 444453 6799999999998877665 222 22345677777774 5566789999999998888875321
Q ss_pred hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 189 ~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
.......|..|..+++|-+-.||.-|+++||.+-.+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 247788899999999999999999999999976543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.95 Score=58.43 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1874)
.|+..|+|.+.+.+.+.+...|..++..|+.++..+ ++.+.|.++.+++++.+.+.-.+. ..+...++++..+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~------~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDV------IVRVSTLRTIPML 936 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCcc------chhhhHhhhhhHH
Confidence 477899999999999777778999999999888866 567789999999999998876541 1112333333333
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCC--cHHHHHHHHH
Q 000196 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDA--PVDIRRAAIE 1051 (1874)
Q Consensus 974 ~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~--~~~vr~~ai~ 1051 (1874)
..-.+.-.. +|+..++|.++.+=..+. +..||..|++
T Consensus 937 l~~~~tL~t-----------------------------------------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 937 LTESETLQT-----------------------------------------EHLSTLVPYLLSLSSDNDNNMMVVREDALQ 975 (1030)
T ss_pred HHhccccch-----------------------------------------HHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 333333333 444444555544433221 4678899999
Q ss_pred HHHhhccc---ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 1052 TLTRLIPR---VQVTGHISSLVHHLKLVLDGKNDELRKDAVDAL 1092 (1874)
Q Consensus 1052 ~l~~l~~~---~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L 1092 (1874)
+++.|.+. -.+.+|-+.++..|+..|+++-.-+|+.|.++=
T Consensus 976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 99888774 446788889999999999877677888888763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.28 E-value=1.5 Score=58.63 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|+.++.+....|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDIYYHRAQLHFIKGE---FAQAGKDYQKSIDLD 429 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 45789999999999999999999999998877552 46788889999999995 688999988866421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. ....+..+|.-...+ ...++.+..|..+++.+|+...+|..+|......
T Consensus 430 P~----------------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~- 480 (615)
T TIGR00990 430 PD----------------------FIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ- 480 (615)
T ss_pred cc----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-
Confidence 10 011233333333322 3467889999999999999999998888764431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.-...|++.|-+++.+.
T Consensus 481 -------------g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 481 -------------NKFDEAIEKFDTAIELE 497 (615)
T ss_pred -------------cCHHHHHHHHHHHHhcC
Confidence 12357899999999875
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.014 Score=66.04 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=100.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
.+.+..+++..+..++.++...+|.++-.+... +...+.- +..++.++..+ ....+-.+..++-.++.....-.+-
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G-l~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG-LDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC-hHHHHHHhcCC--CcEEEeeehhhhhhhhccccchhhh
Confidence 444455666777889999999999888766432 1111111 11222333222 2344555666666666432111111
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
--..-+.++.. +... .+-.++.++..++-.|...-.. ...+ .--+|.+++.+... +..+|.-+..+++.+
T Consensus 164 A~sGaL~pltr-Laks----kdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnI 235 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKS----KDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNI 235 (550)
T ss_pred hhccchhhhHh-hccc----chhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhh
Confidence 00111222333 2221 2455666665555444321110 0000 12367788877754 567787777777766
Q ss_pred Hhhcccc-ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 758 VQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 758 ~~~~~~~-i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
+-..... +-. ..-|.+++.|+.++.+. +++++-.|--+++.+.+-..|
T Consensus 236 aVd~~~Rk~La-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 236 AVDRRARKILA-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hhhHHHHHHHH-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchh
Confidence 5332211 111 12378999999998765 678888877777777653333
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.14 Score=66.64 Aligned_cols=415 Identities=14% Similarity=0.126 Sum_probs=200.1
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 143 GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
|+..-+.++++++|.-.|..+ +...+..++..|..-..| .......-..++..+..+| .|...|-.+.
T Consensus 210 G~l~m~iie~Elkr~~~w~~~----------l~~~~~~~~~~~~~~~~~-~~~~kk~~~l~~kQeqLlr-v~~~lLlNLA 277 (708)
T PF05804_consen 210 GSLCMEIIEHELKRHDLWQEE----------LRKKKKAAEEKPEAKKDY-EKELKKLQTLIRKQEQLLR-VAFYLLLNLA 277 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhhhhhccchhhhhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 444566677777777666431 111111233333221111 2222333344445555555 4455555544
Q ss_pred HHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 223 RVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 223 ~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
+... ...... ..+++-+..-|.+.+ .+....++.+|.-|.-.. .+.|. -..+++.+.+.+.+++..++.
T Consensus 278 ed~~-----ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~ 349 (708)
T PF05804_consen 278 EDPR-----VELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVN 349 (708)
T ss_pred cChH-----HHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHH
Confidence 3322 111221 335555555565543 444444444444443210 11221 123677788888888889999
Q ss_pred HHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhch-hhhhhhhHHHHHHHHHhhcC-CC
Q 000196 300 SITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALD-GELFHYLPTITSHLREAIAP-RR 375 (1874)
Q Consensus 300 ~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~-~~~~p~l~~i~~~l~~~L~~-~~ 375 (1874)
.++.++-.|+.... ..+++ ..++|.|...|.+++.|..++..|-+++..-. +.+..|-+ .++.+.+.+.. ..
T Consensus 350 ~aLrlL~NLSfd~~~R~~mV~---~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSFDPELRSQMVS---LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCcCHHHHHHHHH---CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCC
Confidence 99999999885332 12221 34677788888877777778888887765322 12333333 34444444422 22
Q ss_pred CCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhc---CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000196 376 GKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSA---GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1874)
Q Consensus 376 ~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~---~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1874)
.+...+++..+-.++..- +...-..+ ..++.|+.. .-++-+...++.++.+-|+......+-+-+.+..+ .
T Consensus 426 ~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v-~--- 500 (708)
T PF05804_consen 426 EEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIV-S--- 500 (708)
T ss_pred ccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-h---
Confidence 222222222222222210 00000000 122333321 11333445666666654433322222222222111 0
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccC---------CCcchhhHHHHHhhhccCCChHHHHHH
Q 000196 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFK---------GHDLLEFARDSVVLYLDDEDKATRKDA 522 (1874)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~---------~~~l~~~v~~~~~~~l~~~~~~VR~aA 522 (1874)
..++.+....++.+|+.+... .+.+.||+.+.+.+... ++++.-.+
T Consensus 501 -----------------------~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~--~dDl~LE~ 555 (708)
T PF05804_consen 501 -----------------------SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS--EDDLLLEV 555 (708)
T ss_pred -----------------------cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC--ChHHHHHH
Confidence 001223456677777766433 24566777777665544 34666666
Q ss_pred HHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHH--HhcCCChhHHHHHHHhccC----CCCcchh
Q 000196 523 ALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIA--AVADADVTVRHSIFSSLYG----NRGFDDF 594 (1874)
Q Consensus 523 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~--~~~d~~~~vR~~~l~~l~~----~~~f~~~ 594 (1874)
+..++.+.. +.. ...++ ..++..|+.. +..| |.++...++-+|.. ....+..
T Consensus 556 Vi~~gtla~-d~~------------------~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~l 615 (708)
T PF05804_consen 556 VILLGTLAS-DPE------------------CAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVL 615 (708)
T ss_pred HHHHHHHHC-CHH------------------HHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHH
Confidence 766665542 111 01111 1222233222 1233 44444444444420 1111222
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1874)
+.+.+.+..++..++|.+.+||..+-.+|.-++++.+
T Consensus 616 l~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 616 LKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 3445677888899999999999999999988888764
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.21 Score=61.58 Aligned_cols=183 Identities=16% Similarity=0.081 Sum_probs=121.2
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH--hhcchhhHHH
Q 000196 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI--EKRETRWRVQ 235 (1874)
Q Consensus 158 ~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i--~~r~~~~~~~ 235 (1874)
+-++-.+.+.+.|-+|+..+-+|.++. .+. ..+.......|+|.+..||.+|..++......- .........+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--ccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 444445666677888888888887741 111 123345568899999999999998876554332 1011123445
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHH-------------H---------------
Q 000196 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEI-------------V--------------- 286 (1874)
Q Consensus 236 ~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~-------------l--------------- 286 (1874)
.+...|..+++++.|- ++.+|--|..+||.+-..+.+++.+.+++ ++.. +
T Consensus 278 l~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 6777788888888776 47788778888888766666666665553 3321 1
Q ss_pred ----------------------HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHH
Q 000196 287 ----------------------LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGF 342 (1874)
Q Consensus 287 ----------------------l~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~ 342 (1874)
+..+++.=-.||++++..+..||...|. |. ...+.+|...+.++ ..|..|+
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA----~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FA----VRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cH----HHHHHHHHHHhccHHHHHHHHHH
Confidence 1111222356999999999999987765 43 45677777777654 3588899
Q ss_pred HHHHHHHhh
Q 000196 343 IALGEMAGA 351 (1874)
Q Consensus 343 ~alg~la~~ 351 (1874)
.+|..|+..
T Consensus 432 ~aL~~Is~~ 440 (823)
T KOG2259|consen 432 FALTMISVH 440 (823)
T ss_pred HHHHHHHHH
Confidence 999888766
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.12 Score=60.81 Aligned_cols=328 Identities=15% Similarity=0.122 Sum_probs=177.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHH------HHHhhhChHHHHHHHHHHH-------HH-HHhhhcCC
Q 000196 17 GAGGGSLDALNRILADLCTHGNPKEG-ASLALRKHIE------EQARDLGGEAFSRFMDQLY-------DR-ISGLLESN 81 (1874)
Q Consensus 17 ~~~~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~------~~~~~~~~~~~~~~~~~l~-------~~-i~~l~~s~ 81 (1874)
++.+++|.+| .-+||+++-.-+. |-.-+..+++ +++..+++.+|..|.--|. .- +.-+....
T Consensus 43 ~~~~g~p~l~---~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~ 119 (728)
T KOG4535|consen 43 TPELGSPSLM---TLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAES 119 (728)
T ss_pred CCCCCCceee---EEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666654 3467777543332 4333444443 3455566666655543332 22 22344444
Q ss_pred ChhhhhhHHHHHhHhhccc-cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCc--------------
Q 000196 82 DAAENLGALRAIDELIDVA-LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM-------------- 145 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~-~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~-------------- 145 (1874)
.+..-...+.++..|+.-. +.. ..+.+.+|.+.++..+. ..|+.|+-.+.-++|.|+.+....
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~-~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~ 198 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR-HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSS 198 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccc
Confidence 4444555677777776543 222 24668889999999997 569999999999999887642211
Q ss_pred --------chHH-------------------------------------------HHHHHHHHHhhhcCCCcchhHHHHH
Q 000196 146 --------TADE-------------------------------------------VEFQVKMALDWLRGDRVEYRRFAAV 174 (1874)
Q Consensus 146 --------~~~~-------------------------------------------v~~~~~~~~~~l~~~~~~~~r~aA~ 174 (1874)
++|. .-..+.++.+... .....|..+.
T Consensus 199 n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~--~ps~~rle~~ 276 (728)
T KOG4535|consen 199 NSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY--EPSPMRLEAL 276 (728)
T ss_pred cccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc--CCchhHHHHH
Confidence 1111 0111112222111 1235788899
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh---hH-----HHHHHHHHHHH--
Q 000196 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR---WR-----VQWYYRMFEAT-- 244 (1874)
Q Consensus 175 ~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~---~~-----~~~~~~i~~~~-- 244 (1874)
++|..+|.+-+ ....|+.++...|..++.|+.|.+..-++..+..+..-..+++.. .. .-|....+..+
T Consensus 277 qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~ 355 (728)
T KOG4535|consen 277 QVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPR 355 (728)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChh
Confidence 99999888744 336788899999999999999999988888777665544322211 11 11211110000
Q ss_pred --HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHH-HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000196 245 --QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA-EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1874)
Q Consensus 245 --~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~-~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl 321 (1874)
-++.... -..+.+.++..+.....+-+...-+..+ ..+.++-+|++..|+.+++.+++.+.-.-.-.....+.
T Consensus 356 ~~YDs~~~T----l~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 356 ALYDSEHPT----LQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhhhhcCCC----chhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 0011110 0223333333332211111111111122 23344446788889999988887654322211112234
Q ss_pred HHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000196 322 KICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 322 ~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~ 355 (1874)
......++..|.+. ..|.+++-++|+|..++-..
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 44555555555432 35889999999998876543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.25 Score=59.29 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=117.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccch--hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFN--VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~--~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
+..|+.|....-++.++.. |..+- +.+..++-.+..-.+||+..+|..|+..|+...+. .+.....+++.++
T Consensus 228 s~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~l 301 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQL 301 (533)
T ss_pred hhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHH
Confidence 4557788887767666543 33333 67888888888899999999999999988876543 3445567788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
+.+..||-++.+.++.+-++.+|..+++ ..+..+.+++-++...+-.+.++.++.+|.++..+++.|+.+++..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 9999999887778899999999998888 4556677888888888888889999999999999999999988743
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=69.52 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=131.1
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 199 IWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 199 i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
.+..+++. ...-|+.| +.++...+...+-..=.+++..++..+..-|++..+.-.+.-|+-+|+++++..+.-+..
T Consensus 291 ~l~~~~g~e~a~~~k~a---lsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 291 LLKEISGSERASERKEA---LSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHhccCccchhHHHHH---HHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 44555544 33334443 344444443221112346688888888888887544445777888999999977666666
Q ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHhhchh-
Q 000196 278 RYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD-SGFIALGEMAGALDG- 354 (1874)
Q Consensus 278 ~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~-~a~~alg~la~~v~~- 354 (1874)
+-+.....++..- +..+..++.++=.++-.++.+.|..-+. .+.+.+++ ....|. +++.++..+.+.+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV----NISPLILT---ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH----HHhhHHhc---CcchHHHHHHHHHHHHHhhcCHH
Confidence 6665555566554 4456677888777788888888864332 23333333 222344 555577888777765
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC-CCchHHHHHH
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG-PVMEPHVRGL 404 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g-~~~~p~l~~l 404 (1874)
++-+.+++|++.+.++.......++-.++-|+-.+...+| +.|.||+..+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 4668889999999999977666677789999999999999 7899999765
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0077 Score=75.76 Aligned_cols=223 Identities=19% Similarity=0.220 Sum_probs=162.3
Q ss_pred hcCCChhHHHHHHHhccC--CCCcc-hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYG--NRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~--~~~f~-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1874)
.-||.+-+|...+..+.. ..+.. +......++......+.|++.=|--.|++.+..|++..|..++|.+-. ++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e---~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE---EYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH---HHH
Confidence 468888999988887741 01111 112223466777778889988888889998888888888877665543 222
Q ss_pred HHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhc
Q 000196 647 TYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1874)
Q Consensus 647 ~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1874)
.. +.- ..++.|-...++++.++.+.|+.+..|...++..++...+++ +...+..++..+|.+.+........+
T Consensus 813 s~-k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep-----d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SE-KKK-LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP-----DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hc-ccC-CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-----hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21 111 123445556689999999999999999999999999999864 56667777888899888766666668
Q ss_pred HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccc--cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN--EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 727 ~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~--~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+.+++..++...+...+.-+|.+|+..+..+..++|....|.. ..-++...+....+.+.+..+|..+..|+-.+-
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8888888888877555788999999999999999998776643 122456666677777767788888888876553
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.07 Score=66.24 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhc-----CCcchhHHHHHHHHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRT-----CDDYLKDYITWKLGTLVSI 929 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~-----~~~~~~~~~~~~l~~lv~~ 929 (1874)
...++..|..+++-+.- .....+..|+|.++...+..+.|+.+.+++.+...+.. ++|..-.++|..+|.+++.
T Consensus 24 ~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 35677778888854322 33457899999999999999999999999988876642 2455677889999999987
Q ss_pred HH----HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccCc
Q 000196 930 VR----QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCND 1004 (1874)
Q Consensus 930 ~~----~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~llp~ll~~l~~~~~~~~ 1004 (1874)
+. ..+..+-+.+++.+...++..-. .-...++++++.+..... +.+.+....++|.++.---- ++...
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW-e~~gn 175 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQ------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW-ERRGN 175 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-T------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG-GSTTT
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh-ccCCC
Confidence 64 23557888888888888775421 123367778777766665 56666667777776643221 12223
Q ss_pred hhhHHHHHHHHHHHhcch---hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHHhC
Q 000196 1005 YTYVLDILHTLEVFGGTL---DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLD 1078 (1874)
Q Consensus 1005 ~~~~~~il~~l~~~g~~~---~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~ 1078 (1874)
.....+.++++..-++.. ..++..++..+.+++.....+ ..+.+.|..+.... .+.+|+..|+..+..=|.
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 445667888886654432 367777888887887543223 45666666665553 367899999988776665
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHH
Q 000196 1079 -GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1874)
Q Consensus 1079 -~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1874)
++.....+..+-.++.++...|.++ +...+. +++..-|..+..++
T Consensus 253 ~skT~kf~~~fv~F~~~~~~~~g~~~------li~~id--~IQ~glF~~il~~v 298 (435)
T PF03378_consen 253 SSKTEKFVKRFVVFLSLFAIKYGPDF------LIQTID--SIQPGLFGMILEKV 298 (435)
T ss_dssp HC--HHHHHHHHHHHHHHHHHH-HHH------HHHHHH--TTSTTHHHHHHHHT
T ss_pred hCCcHHHHHHHHHHHHHHHHHcCHHH------HHHHHH--HhcCCcHHHHHHHH
Confidence 3445677777777888888887765 333332 24555566555543
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=70.56 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=127.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
..++.+.+.|.+.+.+||+.++++||.++-..+.+ |.++ ..+|.-+..+..+...-..+.|.|+.+++.
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-----RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-----RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-----HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 45788888999999999999999999998876543 3332 223333333312234456889999999975
Q ss_pred -CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHhcCcchhhHHHH
Q 000196 673 -CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTKREVA 750 (1874)
Q Consensus 673 -~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~d~~~~~~r~~A 750 (1874)
.|+.-..-+...++.|.+.+-.. ++.+...++.+|+.|+....+.+...++ .+.+-+++.|... +.....-|
T Consensus 232 knP~P~w~~isqalpiL~KLiys~-----D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPa 305 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSR-----DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPA 305 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHH
Confidence 34333344556667776666553 7888889999999987654444444343 3456677777754 45567788
Q ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 751 VSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 751 ~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+|.++.+....-.. ...-..++.+..+|.+.. ..+|.+++++++-+.
T Consensus 306 lR~vGNIVTG~D~QTqv-iI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNIT 355 (526)
T COG5064 306 LRSVGNIVTGSDDQTQV-IINCGALKAFRSLLSSPK-ENIRKEACWTISNIT 355 (526)
T ss_pred HHhhcCeeecCccceeh-heecccHHHHHHHhcChh-hhhhhhhheeecccc
Confidence 99999998766543111 112346777777776653 489999988876553
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.038 Score=69.68 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=39.8
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 479 ~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
......|++++|+..+. .+.++..+.+...+.|.++.||+.|+.++.++...
T Consensus 100 p~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 100 PLIRALALRTMGCLRVD--KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI 151 (734)
T ss_pred HHHHHHHhhceeeEeeh--HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC
Confidence 34568899999998663 34466677777788889999999999888887653
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.084 Score=64.96 Aligned_cols=214 Identities=18% Similarity=0.076 Sum_probs=136.6
Q ss_pred HHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 000196 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFS 583 (1874)
Q Consensus 504 ~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~ 583 (1874)
-+.+...+++++++||.+++.+++++-.. .... .|+ ..+.++++.||..++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------------------~a~~----~L~-~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------------------QAEP----WLE-PLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------------------HHHH----HHH-HHhcCCChHHHHHHHH
Confidence 44556778888899999999988765311 1122 222 2357899999999998
Q ss_pred hccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 584 ~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
+++.. . .+-.+.+..+++|+++.||..|+.++|.+.... ..|.+... + .+ .++..|..|+
T Consensus 140 al~~r-~-------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~---a~~~L~~a-------l-~d-~~~~VR~aA~ 199 (410)
T TIGR02270 140 ALGAH-R-------HDPGPALEAALTHEDALVRAAALRALGELPRRL---SESTLRLY-------L-RD-SDPEVRFAAL 199 (410)
T ss_pred HHHhh-c-------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc---chHHHHHH-------H-cC-CCHHHHHHHH
Confidence 88521 1 122556777889999999999999999887643 23433321 2 33 5788899988
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~ 743 (1874)
..++.+-. + .-...++....+. .......+...++. +|. +..++.+...+++.
T Consensus 200 ~al~~lG~--~--------~A~~~l~~~~~~~-----g~~~~~~l~~~lal----~~~------~~a~~~L~~ll~d~-- 252 (410)
T TIGR02270 200 EAGLLAGS--R--------LAWGVCRRFQVLE-----GGPHRQRLLVLLAV----AGG------PDAQAWLRELLQAA-- 252 (410)
T ss_pred HHHHHcCC--H--------hHHHHHHHHHhcc-----CccHHHHHHHHHHh----CCc------hhHHHHHHHHhcCh--
Confidence 88866522 1 1223344423322 22222222222211 122 26777788888764
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
.+|..++.++|.+ | .|..++.|+..+.++ .+|+.+-..+..|..+|...
T Consensus 253 -~vr~~a~~AlG~l----g--------~p~av~~L~~~l~d~---~~aR~A~eA~~~ItG~~l~~ 301 (410)
T TIGR02270 253 -ATRREALRAVGLV----G--------DVEAAPWCLEAMREP---PWARLAGEAFSLITGMDVAL 301 (410)
T ss_pred -hhHHHHHHHHHHc----C--------CcchHHHHHHHhcCc---HHHHHHHHHHHHhhCCCcch
Confidence 3899999999975 2 256788888888654 48999999998876666553
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00047 Score=58.64 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
+.++.+++.+||.++...++.+.+|+++++|.++..|+|.+ ..+|.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 45788899999999988899999999999999999999874 58999999999964
|
... |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.41 Score=58.56 Aligned_cols=153 Identities=16% Similarity=0.243 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHH-HHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY-LKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~-~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
.+..-.++++-|..|+++.|.+.-.+++...|... ..+.. +-++=.+| +-.+|+...++.+.-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-----------aa~nNLa~i~kqqg---nl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-----------AAHNNLASIYKQQG---NLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-----------hhhhhHHHHHHhcc---cHHHHHHHHHHHHhc--
Confidence 66777889999999999999988877777655321 11122 23333445 357888888875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+...|..|.-+|.=.-++ ...+..++.|.+|++++|....|+..+|..
T Consensus 418 --------------------~P~fAda~~NmGnt~ke~------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi------ 465 (966)
T KOG4626|consen 418 --------------------KPTFADALSNMGNTYKEM------GDVSAAIQCYTRAIQINPTFAEAHSNLASI------ 465 (966)
T ss_pred --------------------CchHHHHHHhcchHHHHh------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHH------
Confidence 245777887788766555 356889999999999999998888887754
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh---HHHHHHHHHhcC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD---ILRLLTLWFNHG 1780 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~---~~RlLtLwf~~g 1780 (1874)
+++. -.+..||..|-.++.+.+. ..+..+. .++.+-=|.++.
T Consensus 466 -~kDs-------Gni~~AI~sY~~aLklkPD---fpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 466 -YKDS-------GNIPEAIQSYRTALKLKPD---FPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred -hhcc-------CCcHHHHHHHHHHHccCCC---CchhhhHHHHHHHHHhcccchH
Confidence 3222 3677899999999998542 2233333 344444455553
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.96 E-value=1.6 Score=53.10 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=93.0
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC-CCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND-EDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D-~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
+|.=.-|-..++++|. -.|-. .+-.++.+|...|.+ ..++-+..+++++.++.++.|..=-..|. .|..++...
T Consensus 388 SD~FKiI~ida~rsLs--l~Fp~--k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe-~LC~fIEDc 462 (898)
T COG5240 388 SDGFKIIAIDALRSLS--LLFPS--KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALE-VLCTFIEDC 462 (898)
T ss_pred ccCceEEeHHHHHHHH--hhCcH--HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHH-HHHHHHhhc
Confidence 4444445555566553 22211 112355666554444 46778888888888888777643111111 122222222
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCcccccc--chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRP--YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p--y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
++ -+.+.+.|+-+.+..|..-.| |+..|.+.++- + +.-|+++++.|+...+-...+.+.+
T Consensus 463 ey-------~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---E------N~ivRsaAv~aLskf~ln~~d~~~~-- 524 (898)
T COG5240 463 EY-------HQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---E------NNIVRSAAVQALSKFALNISDVVSP-- 524 (898)
T ss_pred ch-------hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---h------hhHHHHHHHHHHHHhccCccccccH--
Confidence 22 234666777777666554444 55555544432 1 5678889999988777655544333
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
..+..++..++.|+ +.++|+.|...|-.+-
T Consensus 525 ~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 525 QSVENALKRCLNDQ-DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence 34556667788887 6789999987776653
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.033 Score=65.97 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=113.8
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhH-HHHHHHHHHH
Q 000196 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRA 220 (1874)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~V-R~aA~~al~~ 220 (1874)
+-+.|.+++..++..++|.|.+..++..|.-|+.+|++++++-|.-|+.+..-.+..++.+-.|++..| |.|+.+|+..
T Consensus 319 sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 319 SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 345688899999999999998778888999999999999999999999999999999999999998765 5555555554
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
+.++... +.+..+.+.++. . |....-+++.++..+.+ ...|.+.+-+.++.+.++...++.+..||+
T Consensus 399 las~~P~-------~~I~~i~~~Ilt----~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 399 LASHLPL-------QCIVNISPLILT----A-DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHhhCch-------hHHHHHhhHHhc----C-cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 4433221 123333333333 2 22223344446777766 455777788888999999989999999999
Q ss_pred HHHHHhHhHhh
Q 000196 300 SITSLLPRIAH 310 (1874)
Q Consensus 300 ~~~~~i~~la~ 310 (1874)
+++-++-.+..
T Consensus 467 taVfCLVamv~ 477 (516)
T KOG2956|consen 467 TAVFCLVAMVN 477 (516)
T ss_pred hHHHhHHHHHH
Confidence 88766655443
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.08 Score=67.11 Aligned_cols=219 Identities=14% Similarity=0.153 Sum_probs=144.4
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHH
Q 000196 75 SGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV 154 (1874)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~ 154 (1874)
...++++.+..|-+|+.-+..+++-.....-.+..+........+. ..|.=|.-.|-+.+..|+.. ... ..+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev---y~e----~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV---YPE----DIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh---cch----hhH
Confidence 3456778899999999999999985422222222333344444443 45666666777777777775 222 224
Q ss_pred HHHHh-hhcCC----CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 155 KMALD-WLRGD----RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 155 ~~~~~-~l~~~----~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
+...+ |..+. .+...|.+ .++..++..-+..+..|...++...+.++|||+..-|-.++..+|+++....-+-
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 44444 33321 12334444 7778888888999999999999999999999999999999999999998766322
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH----HHHHHHHHh-hcchhHHHHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE----VAEIVLRYL-EHRDRLVRLSITSL 304 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~----i~~~ll~~~-~~~~~~vr~~~~~~ 304 (1874)
..|+..++..+..-..-.+..-+|.+|+.++..++.+.|+-+.|-++. ....+..+. .+++..+|..++.+
T Consensus 883 ----sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 883 ----SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred ----hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 236666666555544333346789999999999999999877774433 333444433 34555566655544
Q ss_pred hHh
Q 000196 305 LPR 307 (1874)
Q Consensus 305 i~~ 307 (1874)
+..
T Consensus 959 lee 961 (982)
T KOG4653|consen 959 LEE 961 (982)
T ss_pred HHH
Confidence 443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.024 Score=74.38 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=145.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
.+...+..-+.+++|.+|..|+-.+...++-..++ ..+...-+.-++...+- +.+..|...|+.++..|+..-+....
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhH
Confidence 34444556677899999999999999887665312 23333434445555553 45678999999999999998666666
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
.|+...++.+++.+. ++....|.+++-++..++. ...+..+.+.|..++++.+|.+|......+..++..+..
T Consensus 332 ~~~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLK-EKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhh-hccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 677777777777775 4555789999999988887 346678899999999999999999999999988876542
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 228 r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
......-...+.+.+..+..|.+ .++|.+|..+++.+.++.|+
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHHHhhH
Confidence 11233456778888888887774 78999999999999887665
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.047 Score=70.96 Aligned_cols=366 Identities=17% Similarity=0.153 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc--chhhcHHhHHHHHHHHH
Q 000196 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQYISELMPLIVEAL 738 (1874)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~~~~llp~l~~~l 738 (1874)
.+..+|.++++...-..+-.-..++..|++.+... +..+...++..|..|+-.... .+. -..++|.+...+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-----n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl 340 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-----NEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHh
Confidence 46677888887654333333345677777777653 556666666677666643221 221 235677788877
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
... +...+..|+..|..+....... +....-.+++.|..+|+++ ..+.-+++++..+..-|..+..
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~~R--~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~-------- 406 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPELR--SQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSM-------- 406 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHHHH--HHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHH--------
Confidence 654 4567888888888876554332 1111123566677777654 3455566666555433322110
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL- 897 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l- 897 (1874)
+ . | +-+++.|+++|-..+.......++..+.++...- ++..-+
T Consensus 407 -------------------------f---~-----~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~ 450 (708)
T PF05804_consen 407 -------------------------F---A-----Y-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMC 450 (708)
T ss_pred -------------------------H---h-----h-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHH
Confidence 0 0 0 1123445554433222221112222222222110 000000
Q ss_pred -cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000196 898 -PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1874)
Q Consensus 898 -~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1874)
...++.++...-...+.+.-.++.+++.=-...+..+.+|+.+++..+.. .+. ....+.+++.++.-
T Consensus 451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~----~~~--------ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS----GDS--------EEFVVECLGILANL 518 (708)
T ss_pred hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc----CCc--------HHHHHHHHHHHHhc
Confidence 12234443322222221111122222211112234466777777766543 110 11456666665543
Q ss_pred h--hhhhhccch--hhHHHHHHhcccccccCchhhHHHHHHHHHHHhc--chhhhh--hhhHHHHHHhhcC-CCcHHHHH
Q 000196 977 L--NDEFRTHLP--VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGG--TLDEHM--HLLLPALIRLFKV-DAPVDIRR 1047 (1874)
Q Consensus 977 l--~~~f~~yl~--~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~--~~~~~~--~~ilp~l~~~~~~-~~~~~vr~ 1047 (1874)
- +.++..++. .++|.+.+.|.... +.+ ...+.++-.+.+++. .....+ ..+++.++.++.. ..+.+.-.
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g~-~~d-Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPGA-SED-DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCCC-CCh-HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 2 335555654 68888888886432 222 222222222222211 111222 2468888888853 24677778
Q ss_pred HHHHHHHhhcccccccchh---HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000196 1048 AAIETLTRLIPRVQVTGHI---SSLVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1048 ~ai~~l~~l~~~~~~~~~~---~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
..+-++..+.......+++ +.+..-++..+++.|+++|+.+=.+|-.++.
T Consensus 597 Qil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 597 QILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888888887763322222 3567778899999999999887777765543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.059 Score=66.24 Aligned_cols=179 Identities=18% Similarity=0.162 Sum_probs=113.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
+..|+. +..|+++.||..+.++|+.- ..+.....|...+.|+++.||..++..++..... | .+.+
T Consensus 88 ~~~L~~-~L~d~~~~vr~aaa~ALg~i-------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-~---~~~L--- 152 (410)
T TIGR02270 88 LRSVLA-VLQAGPEGLCAGIQAALGWL-------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-P---GPAL--- 152 (410)
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHhcC-------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h---HHHH---
Confidence 334444 45789999999999999631 1245677888889999999999999888863321 1 2222
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
... ++ + .++..|..|+.+||.+-... .++.|...+.+ .++.|+.+++.+++.+..
T Consensus 153 -~~~---L~-d-~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d-----~~~~VR~aA~~al~~lG~---- 207 (410)
T TIGR02270 153 -EAA---LT-H-EDALVRAAALRALGELPRRL----------SESTLRLYLRD-----SDPEVRFAALEAGLLAGS---- 207 (410)
T ss_pred -HHH---hc-C-CCHHHHHHHHHHHHhhcccc----------chHHHHHHHcC-----CCHHHHHHHHHHHHHcCC----
Confidence 222 33 3 68899999999999885421 12224444555 388999998888765522
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
++..+.+.....+. ....+..+...++.. |. |..+..|..+++.+ .+|+.++.++|.+
T Consensus 208 ------~~A~~~l~~~~~~~-g~~~~~~l~~~lal~----~~--------~~a~~~L~~ll~d~---~vr~~a~~AlG~l 265 (410)
T TIGR02270 208 ------RLAWGVCRRFQVLE-GGPHRQRLLVLLAVA----GG--------PDAQAWLRELLQAA---ATRREALRAVGLV 265 (410)
T ss_pred ------HhHHHHHHHHHhcc-CccHHHHHHHHHHhC----Cc--------hhHHHHHHHHhcCh---hhHHHHHHHHHHc
Confidence 12333444433332 222333233233321 21 36788888888754 4999999999998
Q ss_pred c
Q 000196 802 G 802 (1874)
Q Consensus 802 g 802 (1874)
|
T Consensus 266 g 266 (410)
T TIGR02270 266 G 266 (410)
T ss_pred C
Confidence 8
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.67 Score=58.17 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh---------hhhcH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD---------VQLKE 1361 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~---------~~~~~ 1361 (1874)
.+..+..++.|.+|+.+++...... ++.....-.|..+|...|+.+.+.-+++....... .....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4666778888999998888776532 23345667889999999999988887765432211 11123
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
..|.+.|++++|+..|++.+...+. . ......+..++...|+|+.-.+..+..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~--~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDF--A-EGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcc--h-HHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4578889999999999988754222 1 345667888899999998776655543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.9 Score=58.79 Aligned_cols=330 Identities=14% Similarity=0.064 Sum_probs=167.2
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhccccc-cc-----------------------------CCCCcHHHHHHHH
Q 000196 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARS-NR-----------------------------MDANPVAVVEALI 1332 (1874)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~-~~-----------------------------~~~~~~~~~e~L~ 1332 (1874)
+-.+.+..+...-.++|.+..|+.+++.-...... .. .-.....+...|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 33466777777778888888888776543221100 00 0001122446789
Q ss_pred HHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1333 HINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1333 ~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
+.|.+.|+.|.|..++......- ..+....-|-+.|++++|++.|++-....-.|+. .....+++++..+|.++..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~--~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ--FTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhccchHHH
Confidence 99999999999999887543211 1112223488999999999999876544334442 3456788889999998765
Q ss_pred HHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHH---H
Q 000196 1411 NNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL---V 1486 (1874)
Q Consensus 1411 ~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~---i 1486 (1874)
.+........ ..++ ..+......+..+.|+++...+..+.+...+...+..++..+. ..+..-+|+.. +
T Consensus 345 ~~i~~~m~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~-----~~G~~~~A~~lf~~M 417 (697)
T PLN03081 345 KQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG-----NHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHhCCCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-----HcCCHHHHHHHHHHH
Confidence 5443322110 0111 1122244567788899999888888775432222211111100 00111111111 1
Q ss_pred H-hcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC-CCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh
Q 000196 1487 R-RGKV--LESYERAYSNMVRVQQLSELEEVIDYCTLPVG-NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562 (1874)
Q Consensus 1487 ~-~~~~--~esy~ray~~l~~lq~L~EleEii~~~~~~~~-~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v 1562 (1874)
. .|.. ...|........+...+.|-.++.+......+ .|. ......+..... -...++.=..++ +..-
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~-----r~G~~~eA~~~~--~~~~ 489 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLG-----REGLLDEAYAMI--RRAP 489 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHH-----hcCCHHHHHHHH--HHCC
Confidence 1 1110 11122222222222223333333221110000 000 001111112211 112233222332 2221
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1563 l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
+ ..+..+|-.+.+.|+++|+++.|..+..++.+.+|.. . .....-+..+-..| +..+|.+.++.+
T Consensus 490 ~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~----~------~~y~~L~~~y~~~G---~~~~A~~v~~~m 554 (697)
T PLN03081 490 F--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK----L------NNYVVLLNLYNSSG---RQAEAAKVVETL 554 (697)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC----C------cchHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 2 2457789999999999999999999999988776531 1 11122334444455 468898888876
Q ss_pred HH
Q 000196 1643 AM 1644 (1874)
Q Consensus 1643 ~~ 1644 (1874)
..
T Consensus 555 ~~ 556 (697)
T PLN03081 555 KR 556 (697)
T ss_pred HH
Confidence 54
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.14 Score=64.74 Aligned_cols=198 Identities=18% Similarity=0.157 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCcc
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYV 634 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~------~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v 634 (1874)
+.+|++....+.|+.....++.-|.+ ....+.+ .-..+++.|...++++ ++++...|+.++--|++..|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34566555566677776666554421 1111110 1124678888888877 68999999999999999999642
Q ss_pred chHH----HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 000196 635 LPAL----RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1874)
Q Consensus 635 ~p~l----~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1874)
--.. -.++.+-|..+++- +..|+++.+|-.|.+..+..+..- .-+-.++..+.- ....+...++.
T Consensus 248 a~vV~~~aIPvl~~kL~~Ieyi----DvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDF-----FSi~aQR~Ala 316 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYI----DVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDF-----FSIHAQRVALA 316 (1051)
T ss_pred heeecccchHHHHHhhhhhhhh----HHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHH-----HHHHHHHHHHH
Confidence 1111 12333444445554 567888888888887665443321 011122222221 01222333444
Q ss_pred HHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 000196 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1874)
Q Consensus 711 ~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1874)
....++.....+--.|+.+.+|++...|+.. +...-+.+.-++..++... .++|+.++.|.
T Consensus 317 iaaN~Cksi~sd~f~~v~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f-------~h~~~kLdql~ 377 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVMEALPLLTPLLSYQ-DKKPIESVCICLTRIADGF-------QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhc-------ccChHHHHHHh
Confidence 4445666666666678889999999999865 3445577888888887654 45566776665
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0096 Score=56.50 Aligned_cols=87 Identities=29% Similarity=0.392 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1874)
+.|+.....|+++.+|..++.+|+. + ..++.++.|...++|+++.||..|+..||++.. .+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~~ 64 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE---L----GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEAI 64 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC---C----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---c----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHH
Confidence 4455555589999999999999962 2 235789999999999999999999999998752 1122
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
..+...+.++ .+...|..|+..||
T Consensus 65 ~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 2222234444 45566888888775
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=1 Score=57.34 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000196 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1874)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~ 142 (1874)
+.+....+.+-+.+++++.++-.|..+..++..+..... +.. .-.-|.+.|..++. +.|+.|...|..++..+.+..
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~-~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLV-EDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhc-cccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 345566677778888999888889999999999865531 100 01236778888886 568899999999999888753
Q ss_pred -CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 000196 143 -GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1874)
Q Consensus 143 -g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1874)
+.....+..+.+...++-+.+-..|+ -+.++..+++..|+.= .-...|++.+..-|...++.|--.|...+-+.
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWG----QIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 33334444455555555444333332 3567888888888753 45667888888888888888867777766665
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 222 LRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 222 ~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
+..+.+ .....+.++-+.+...+... + +..+.++.=++.++...++
T Consensus 267 ~~~~~~----~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 267 VKYLKQ----VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHHHH----HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChH
Confidence 544331 33345556656565555554 2 7778877777766665443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=60.71 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
-++..+..+++.+.+ ++...|.+|+..+..+..+ .+..+..+..++++.+.++++-.+..-+..|+.+++-+.-.+.
T Consensus 40 ~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 344557777777754 4467899999988776654 6678888999999999999986665555556666654332211
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHh--h-c--------
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYL--E-H-------- 292 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~--~-~-------- 292 (1874)
.......++..+.|.+...+.+... ...|.+++.+|+-+...++.-..... -+.++.++... + +
T Consensus 119 --~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 119 --AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred --CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 1123456777888877777766532 34556666677776653222111111 13344332211 1 1
Q ss_pred -chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh---hh-hhhhHHHHH
Q 000196 293 -RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG---EL-FHYLPTITS 365 (1874)
Q Consensus 293 -~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~---~~-~p~l~~i~~ 365 (1874)
.++.|..+++.+++-|+...+..-+..++...++.|..+|.... .|.+|.++|+.+-+.... ++ .+..+.+++
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~ 276 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLE 276 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHH
Confidence 13578999999999998776654344677889999999998764 588999999988665543 22 233444555
Q ss_pred HHHHh
Q 000196 366 HLREA 370 (1874)
Q Consensus 366 ~l~~~ 370 (1874)
.+++.
T Consensus 277 ~l~~L 281 (309)
T PF05004_consen 277 QLREL 281 (309)
T ss_pred HHHHH
Confidence 54443
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.022 Score=72.45 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=134.8
Q ss_pred cHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHh---h-hChHH---H-HHHHHHHHHHHHhhhcCCChhhhhhHHHHH
Q 000196 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQAR---D-LGGEA---F-SRFMDQLYDRISGLLESNDAAENLGALRAI 93 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~---~-~~~~~---~-~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai 93 (1874)
+.+...++++.|++++- ...|+..+.-++.+.-. + -..+. + ++++.++++.+.+.++......|--=+.|+
T Consensus 813 s~~ia~klld~Ls~~~~-g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 813 SSEIAEKLLDLLSGPST-GSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred cchHHHHHHHhcCCccc-cchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHH
Confidence 34455666666666421 11244555555433211 1 01111 1 578888888888877755555666566677
Q ss_pred hHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCc--chhH
Q 000196 94 DELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV--EYRR 170 (1874)
Q Consensus 94 ~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~--~~~r 170 (1874)
...+.--+-+ .-+.+..+.+.|...+. ..|..|+-.+..++.-+....++...+++...++..+..=.+.++ -..|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 7666431111 12334556667777775 579999889999999888878899999999999988765433332 5789
Q ss_pred HHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHH
Q 000196 171 FAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1874)
Q Consensus 171 ~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~a 217 (1874)
..|+..+..|.+..|. .+.+|-+.++.+|.+.|.||+-.||+.|.++
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999999997774 8999999999999999999999999998874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=2 Score=57.54 Aligned_cols=333 Identities=15% Similarity=0.069 Sum_probs=187.1
Q ss_pred CHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000196 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1874)
Q Consensus 1287 ~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1874)
.+.+++....+.|.+..|+-.++...... +...+....|.-.....|+.|.+...++..... . . .....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34567778888899999998887766532 344567777878888899999998888754321 1 1 12234
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHH
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWN 1439 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~ 1439 (1874)
..+.+.|++++|...|++.+...++. .+....+.+++..+|+++.-....+... .+..++.. ....+...
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~---~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~-----~~~~~l~~ 189 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGN---SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI-----ATCLSFLN 189 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHH
Confidence 45788999999999999988754432 4556778889999999987655444321 11122111 11224667
Q ss_pred cCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000196 1440 MGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1874)
Q Consensus 1440 l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~ 1519 (1874)
.|+++.-......+-..... .........+......++ |..| +..++.++..
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~-------------~~~~~~~~l~~~l~~~g~----~~eA---------~~~~~~al~~-- 241 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFAL-------------ERQESAGLAVDTLCAVGK----YQEA---------IQTGESALAR-- 241 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHHHHCCC----HHHH---------HHHHHHHHhc--
Confidence 88888876655543110000 000000000000111111 1111 1111122111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccCCHHH-H-HHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000196 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEV-W-QALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLL 1596 (1874)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~-w-~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~ 1596 (1874)
.+.. ......+-.... ...+++. . +-+-..++.+ +.| ++...|..++.+..+.|+++.|...+.++.
T Consensus 242 ~p~~----~~~~~~Lg~~l~-----~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 242 GLDG----AALRRSLGLAYY-----QSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred CCCC----HHHHHHHHHHHH-----HcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110 111111111111 1111110 0 0111122222 334 468899999999999999999999999998
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000196 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1874)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1874)
..+|. .+.+....+..++..|+ ..+|+..++..+...... .......+.++.
T Consensus 312 ~l~P~----------~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~---------------~~~~~~~a~al~ 363 (656)
T PRK15174 312 ATHPD----------LPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT---------------SKWNRYAAAALL 363 (656)
T ss_pred HhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHH
Confidence 87653 46777778899999995 689999998776531100 000011233333
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1677 KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1677 ~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
..| ..++.+..|..+++.+|+..
T Consensus 364 ~~G-------------~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 364 QAG-------------KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCC-------------CHHHHHHHHHHHHHhChhhc
Confidence 333 45778888999988888744
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=61.09 Aligned_cols=142 Identities=21% Similarity=0.166 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHH-----------H-HhhcCCchhHHHHHHHHHHHHHHHHhh-------c
Q 000196 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAI-----------W-VALRDPTLAVRERAVEALRACLRVIEK-------R 228 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i-----------~-~~l~D~~~~VR~aA~~al~~~~~~i~~-------r 228 (1874)
.|.+|+.+|..++.. .|+.|++|-+.++|-- + -.++||+++||-+|+.++..+++-.+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 599999999999999 6778999988888754 3 346899999999999999988764332 1
Q ss_pred ch---h------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHH
Q 000196 229 ET---R------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLV 297 (1874)
Q Consensus 229 ~~---~------~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~v 297 (1874)
.. . .-..++..+...+...+.........-..+.++..++.+++ ..=...+.+++..+..+..|+++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 10 0 01122333334444444433222333444556666665433 2222344556666667777788888
Q ss_pred HHHHHHHhHhHhh
Q 000196 298 RLSITSLLPRIAH 310 (1874)
Q Consensus 298 r~~~~~~i~~la~ 310 (1874)
|-+++.+++.+..
T Consensus 162 ~v~~l~~~~~l~s 174 (182)
T PF13251_consen 162 RVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHc
Confidence 8888777777654
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.07 Score=65.36 Aligned_cols=184 Identities=27% Similarity=0.372 Sum_probs=120.5
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.++++.+|..+...++. + ...+.++.+...+.|+++.||..|...||.+.... ..| .++..
T Consensus 51 ~l~~~~~~vr~~aa~~l~~---~----~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~---a~~-------~li~~ 113 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGE---L----GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE---AVP-------PLVEL 113 (335)
T ss_pred HHcCCCHHHHHHHHHHHhh---h----chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh---HHH-------HHHHH
Confidence 3577899999999888752 1 12467899999999999999999999888755321 222 23333
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCC-------CCCChhHHHHHHHHHHHHHHhccc
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTG-------INANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~-------~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
+..+ .+...|..+++.|+.+-.... +..++..+.+... ......++..+..+++.+..
T Consensus 114 l~~d-~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 114 LEND-ENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHcC-CcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 3434 577889999999888754322 3334444444310 00111344444545444322
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
+...+.+...+.+. +..+|..|..+||.+.... ..+...+...+.+ .++.+|..++..+|.+
T Consensus 179 ------~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~-~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 ------PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN----------VEAADLLVKALSD-ESLEVRKAALLALGEI 240 (335)
T ss_pred ------hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcC-CCHHHHHHHHHHhccc
Confidence 34566777788776 4589999999999875432 2455666666654 4789999999998887
Q ss_pred c
Q 000196 802 G 802 (1874)
Q Consensus 802 g 802 (1874)
|
T Consensus 241 ~ 241 (335)
T COG1413 241 G 241 (335)
T ss_pred C
Confidence 6
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=7.8 Score=56.01 Aligned_cols=194 Identities=13% Similarity=0.010 Sum_probs=118.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
++...|..++.+..+.|+++.|...+.++...+|....... .........+..+.....+|+ ..+|+..+++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~A 377 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQA 377 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 56889999999999999999999999999877653210000 000000112233455566774 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+..... .+.++..+|.-.... ...++.++.|+++++.+|+...+|+.++...
T Consensus 378 l~~~P~----------------------~~~a~~~Lg~~~~~~------g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 378 RQVDNT----------------------DSYAVLGLGDVAMAR------KDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHhCCC----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 653110 012333444443332 2457888999999999999999999887764
Q ss_pred HH-----HHHhhhc--cCCC---------------------CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000196 1723 TA-----VMSHYTL--RGLP---------------------SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1874)
Q Consensus 1723 ~~-----~~~~~~~--~~~~---------------------~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1874)
.. .+..... ...+ .....-...|++.|-+++... + .......++-.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P-~~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----P-GSVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHH
Confidence 21 1100000 0000 000123357888898888875 2 23445677788
Q ss_pred HHHhcCCcHHHHHHHHhcccCCC
Q 000196 1775 LWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+++..|+..+....+++.+..-|
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 88888988877777776654333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.5 Score=59.62 Aligned_cols=477 Identities=12% Similarity=0.084 Sum_probs=232.0
Q ss_pred HHHHHHHhhhCCC--CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHH
Q 000196 1270 LLNLAEFMEHDEK--PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI 1347 (1874)
Q Consensus 1270 ll~l~e~m~~~~~--~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi 1347 (1874)
.+.+.+.|...+. |-...+..+..++.+.+.+..|....+.-.... ..+ ...+...|+..|.+.|+.|.|..+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~~~-~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----FEP-DQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CCc-chHHHHHHHHHHhcCCCHHHHHHH
Confidence 3444455654331 112334566667777777665554443222111 122 346778999999999999999999
Q ss_pred HHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChH
Q 000196 1348 LTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPA 1424 (1874)
Q Consensus 1348 ~~~~~~~--~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~ 1424 (1874)
+...... .........|-+.|++++|++.|++-......|+. ......++++..+|..+.-...-..... ...++
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP--RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 8754321 11122223478899999999999987665444432 3446778888888876543332111000 00000
Q ss_pred HHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHH---HHHHh-cC--hhhhHHHH
Q 000196 1425 ARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV---LLVRR-GK--VLESYERA 1498 (1874)
Q Consensus 1425 ~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~---~~i~~-~~--~~esy~ra 1498 (1874)
..+......+.-+.|+++...+..+.++..+...+..++..+.. .+.+-+|+ ..+.+ +- -.-.|...
T Consensus 259 --~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 --TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred --ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11112345677788999998888888765433222222111110 01111221 11111 11 11234433
Q ss_pred HHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000196 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASL 1578 (1874)
Q Consensus 1499 y~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~l 1578 (1874)
.....++..+.+-+++....... +-+........+.....+ ..+++.=..++. -+ +..+..+|--++..
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~---~m--~~~d~~t~n~lI~~ 400 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSK-----WGRMEDARNVFD---RM--PRKNLISWNALIAG 400 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHH-----CCCHHHHHHHHH---hC--CCCCeeeHHHHHHH
Confidence 33444444455544444322110 000000011122222211 122332222221 11 12467889999999
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA-YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e-~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
+-++|+.+.|...+.++..... . |..+++- .+.-+-+.| ..++|.+.++.+..+....++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~--~--------Pd~~T~~~ll~a~~~~g---~~~~a~~~f~~m~~~~g~~p~------ 461 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGV--A--------PNHVTFLAVLSACRYSG---LSEQGWEIFQSMSENHRIKPR------ 461 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--C--------CCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCC------
Confidence 9999999999999988764321 1 2233332 223333445 467898888887654221111
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1874)
...-..+...|.+.| .++++.+.|++.- ..| ....|..+...|.. .++
T Consensus 462 -------~~~y~~li~~l~r~G-------------~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-------~g~--- 509 (697)
T PLN03081 462 -------AMHYACMIELLGREG-------------LLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-------HKN--- 509 (697)
T ss_pred -------ccchHhHHHHHHhcC-------------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-------cCC---
Confidence 001112233333333 3455656565431 222 34456665554432 110
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH----HhcccCCChhhHHHHHHHHHH---
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL----QKGFAHVNINTWLVVLPQIIA--- 1810 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~----~~~~~~ip~~~wl~~ipQLia--- 1810 (1874)
+..|...+-+.+.+.+ .+ ...-.-|..++...|..+++.+.+ ++++...|-+.|+++--+.-.
T Consensus 510 ----~~~a~~~~~~l~~~~p-----~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 510 ----LELGRLAAEKLYGMGP-----EK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred ----cHHHHHHHHHHhCCCC-----CC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 1112222222233321 11 111234666777777776654433 356777788888765322111
Q ss_pred -hccCCC-hhHHHHHHHHHHHHHh
Q 000196 1811 -RIHSNN-RAVRELIQSLLVRIGQ 1832 (1874)
Q Consensus 1811 -ri~~~~-~~v~~~l~~ll~~i~~ 1832 (1874)
--.||. ..+.+.+..++.++.+
T Consensus 580 ~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 580 GDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Confidence 123443 3455556666666654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=5.1 Score=56.05 Aligned_cols=463 Identities=13% Similarity=0.081 Sum_probs=229.8
Q ss_pred CCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHH
Q 000196 1285 PIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKES 1362 (1874)
Q Consensus 1285 ~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~ 1362 (1874)
.+.+..+..++.+.+....|.-..+...... . .....+...|+..|.+.|+.|.+..++...... ...+....
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g----~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTG----F-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhC----C-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 3445555666666666555544333322211 1 123467789999999999999999998854321 01112223
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1874)
.|-+.|++++|++.|++-....-.|+. ......+..+.++|+++...+........ ..+. ..+......+..+.|
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~--~~~~n~Li~~y~k~g 438 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDE--ITIASVLSACACLGDLDVGVKLHELAERKGLISY--VVVANALIEMYSKCK 438 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCc--eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcC
Confidence 488999999999999876544333432 23467788888899887665544322111 0111 122234457788899
Q ss_pred ChhhHHHHHhhcCCCCcchhhccccccc-cCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHHHHHhHhhhhHHHHHHhh
Q 000196 1442 EWDQMAEYVSRLDDGDESKLRGLGNTAA-NGDGSSNGTFFRAVLLVRRGK--VLESYERAYSNMVRVQQLSELEEVIDYC 1518 (1874)
Q Consensus 1442 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~l~~lq~L~EleEii~~~ 1518 (1874)
+++...+..+.+...+...+..+...+. .+.....-.+|+.+. .+. -.-.|........++-.+.+-.++..+.
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~---~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML---LTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH---hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 9999999888886543222221111110 000000011222221 111 1112333333333333444444443322
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000196 1519 TLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1874)
Q Consensus 1519 ~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1874)
... +-.........+...+.+ ..+++.-..++.- + ..|..+|--++..+-++|+.+.|...+.++...
T Consensus 516 ~~~-g~~~~~~~~naLi~~y~k-----~G~~~~A~~~f~~---~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 516 LRT-GIGFDGFLPNALLDLYVR-----CGRMNYAWNQFNS---H---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHh-CCCccceechHHHHHHHH-----cCCHHHHHHHHHh---c---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 110 000000001122233321 1233333332221 1 356889999999999999999999999887643
Q ss_pred CCCCCcccccCCCChHHHHHH-HHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000196 1599 DPETSHENVRYHGPPQVMYAY-LKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1874)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~e~-~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1874)
.. .| ..+++.. +.-.-+.| ...+|.+.++.+..+....++ ...-..+..+|.+
T Consensus 584 g~--~P--------d~~T~~~ll~a~~~~g---~v~ea~~~f~~M~~~~gi~P~-------------~~~y~~lv~~l~r 637 (857)
T PLN03077 584 GV--NP--------DEVTFISLLCACSRSG---MVTQGLEYFHSMEEKYSITPN-------------LKHYACVVDLLGR 637 (857)
T ss_pred CC--CC--------CcccHHHHHHHHhhcC---hHHHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHHh
Confidence 21 11 1222222 22333445 467899988887754332111 0011122333333
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1678 ~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
.|+ .+++.+.+++. .+.| ...+|..+-..|.. . + ..+....+.+..+ .+.+
T Consensus 638 ~G~-------------~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~----~---~----~~e~~e~~a~~l~---~l~p 688 (857)
T PLN03077 638 AGK-------------LTEAYNFINKM-PITP-DPAVWGALLNACRI----H---R----HVELGELAAQHIF---ELDP 688 (857)
T ss_pred CCC-------------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH----c---C----ChHHHHHHHHHHH---hhCC
Confidence 333 45565666553 2334 34667766555421 1 1 1122223333322 2321
Q ss_pred ccCCCcchHHhHHHHHHHHHhcCCcHHHHH---HH-HhcccCCChhhHHHHHHHHH----HhccCCC-hhHHHHHHHHHH
Q 000196 1758 HAKGVDDSLQDILRLLTLWFNHGATEEVQI---AL-QKGFAHVNINTWLVVLPQII----ARIHSNN-RAVRELIQSLLV 1828 (1874)
Q Consensus 1758 ~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~---~~-~~~~~~ip~~~wl~~ipQLi----ari~~~~-~~v~~~l~~ll~ 1828 (1874)
. ....-.-|.+++...|..+++.+ .| ++++...|-+-|+++=-..= .--.||. ..+...+..|..
T Consensus 689 -----~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 762 (857)
T PLN03077 689 -----N-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYE 762 (857)
T ss_pred -----C-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 1 12223345567777787776544 33 35688888888886532211 1113443 445666666666
Q ss_pred HHHh
Q 000196 1829 RIGQ 1832 (1874)
Q Consensus 1829 ~i~~ 1832 (1874)
++.+
T Consensus 763 ~~~~ 766 (857)
T PLN03077 763 KMKA 766 (857)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=3.7 Score=51.56 Aligned_cols=351 Identities=16% Similarity=0.205 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 169 RRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
.++-+-+++..|.+...+++ .-+...|-+-|...++.--.-|..+++. +..|+- ...+...+. .-|
T Consensus 90 EKqIGYl~is~L~n~n~dl~----klvin~iknDL~srn~~fv~LAL~~I~n----iG~re~--~ea~~~DI~----KlL 155 (938)
T KOG1077|consen 90 EKQIGYLFISLLLNENSDLM----KLVINSIKNDLSSRNPTFVCLALHCIAN----IGSREM--AEAFADDIP----KLL 155 (938)
T ss_pred HHHHhHHHHHHHHhcchHHH----HHHHHHHHhhhhcCCcHHHHHHHHHHHh----hccHhH--HHHhhhhhH----HHH
Confidence 45666677777776654443 3455556667766666654445554443 333442 222222222 223
Q ss_pred cCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000196 249 GRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1874)
Q Consensus 249 ~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1874)
-+++. .-+++.|.++|=.|.+..++.+.+ ++-.+.++..+++.+-.|-.++..+|-.++...++.+. .+++.
T Consensus 156 vS~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~ 228 (938)
T KOG1077|consen 156 VSGSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPL 228 (938)
T ss_pred hCCcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHH
Confidence 23221 346777777888888887776554 23334555667888877888899999999988887543 23332
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhhchhhhhhhh------HHHHHHHHHhh---cCC-CCCCCchhHHHHHHHHHHhCCCc
Q 000196 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYL------PTITSHLREAI---APR-RGKPSLEALACVGNIARAMGPVM 397 (1874)
Q Consensus 328 Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l------~~i~~~l~~~L---~~~-~~~~~~~a~~~l~~l~~~~g~~~ 397 (1874)
|..-|..++.++|..+..|. |-+.-.+...| ... ++..+...++|+..|.....+-
T Consensus 229 -------------avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~- 294 (938)
T KOG1077|consen 229 -------------AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEP- 294 (938)
T ss_pred -------------HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccC-
Confidence 22333345666665543332 11222222222 111 1111233445554443322110
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccC
Q 000196 398 EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477 (1874)
Q Consensus 398 ~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1874)
|-...+... ..-..=|++.|+.+..- | .
T Consensus 295 -~~~k~vq~~-------------------------na~naVLFeaI~l~~h~-------------------------D-~ 322 (938)
T KOG1077|consen 295 -PKSKKVQHS-------------------------NAKNAVLFEAISLAIHL-------------------------D-S 322 (938)
T ss_pred -ccccchHhh-------------------------hhHHHHHHHHHHHHHHc-------------------------C-C
Confidence 000000000 00011123333322110 0 1
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH
Q 000196 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1874)
+++....|+..||.| +.+....+|.-|-.++|.+....+ +...
T Consensus 323 e~~ll~~~~~~Lg~f------------------ls~rE~NiRYLaLEsm~~L~ss~~-------------------s~da 365 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQF------------------LSHRETNIRYLALESMCKLASSEF-------------------SIDA 365 (938)
T ss_pred cHHHHHHHHHHHHHH------------------hhcccccchhhhHHHHHHHHhccc-------------------hHHH
Confidence 233455666666655 455567888888889999876432 1112
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP 636 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p 636 (1874)
+..=.+.++...-+|+|..||+.+++-|-. |. ..- -..++.-+++.+...++.+|+..+--+.-|++..... +.
T Consensus 366 vK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~N-ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD-y~ 440 (938)
T KOG1077|consen 366 VKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSN-AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATD-YS 440 (938)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhh-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC-cc
Confidence 222222333444569999999998887631 11 111 1235566666666677888876554444455543221 23
Q ss_pred HHHHHHHHHHHH
Q 000196 637 ALRRHLIQLLTY 648 (1874)
Q Consensus 637 ~l~~~l~~~l~~ 648 (1874)
..-.++++++..
T Consensus 441 WyVdviLqLiri 452 (938)
T KOG1077|consen 441 WYVDVILQLIRI 452 (938)
T ss_pred hhHHHHHHHHHH
Confidence 445566666654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.1 Score=56.55 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHhhccccc-CCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 483 QLALQTLARFNF-KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 483 ~~Al~~L~~~~f-~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
..-++.|.++.- ....+.+++-++ ++.++.++-+||+.+..-.-.++.. + ...+++..+
T Consensus 298 lIvldrl~~l~~~~~~il~~l~mDv-LrvLss~dldvr~Ktldi~ldLvss-------------r------Nvediv~~L 357 (948)
T KOG1058|consen 298 LIVLDRLSELKALHEKILQGLIMDV-LRVLSSPDLDVRSKTLDIALDLVSS-------------R------NVEDIVQFL 357 (948)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHH-HHHcCcccccHHHHHHHHHHhhhhh-------------c------cHHHHHHHH
Confidence 344555555531 012233444443 5788899999998766544444321 1 122333322
Q ss_pred HHHHHHHHh--cCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 562 VEKLLIAAV--ADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 562 l~~Ll~~~~--~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
-..+....- .|.....|...++.+..| ..| +..+ ..+++.++..+.|.+..--..++..+....+.+| .|
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~cav~F-p~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~L 430 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF-PEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NL 430 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcC-hHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hH
Confidence 222222211 233345688888877533 233 3232 4578999999999998877777777777777665 45
Q ss_pred HHHHHH----HHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 639 RRHLIQ----LLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 639 ~~~l~~----~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
|..++. .+..+.. ++.-+-|+|.+|+-++..
T Consensus 431 r~~ii~~l~~~~~~irS----~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRS----SKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHhhhhhcc----cccchhHHHHHHHHHhhh
Confidence 544333 2333322 334456778887776553
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.01 Score=56.29 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
++.|+..+.++ .++.++..++.++|.+. -++.+|.+++.+.|. +..+|..|+.+||.+-
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 35667777332 38899999998888432 247899999999875 6899999999999762
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
-|+.++.|...+.++.+..+|.+++..||
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 15678888898988778888999998876
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=4.4 Score=51.84 Aligned_cols=54 Identities=26% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhChHHHH-HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 43 ASLALRKHIEEQARDLGGEAFS-RFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~-~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
+.+-|.+++--. ..+|.|. .--.+++=.+.+++++.|.-.|..--++|..+-..
T Consensus 40 c~~~lskllyll---~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~i 94 (865)
T KOG1078|consen 40 CRHILSKLLYLL---NQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKI 94 (865)
T ss_pred HHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc
Confidence 555555554222 3344442 22233444566777777777777777777776444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=4.2 Score=56.78 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS-LGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~-~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.+..+|-.++..+.+.|+++.|...+.++....- .|..+.|..+-..+. .| +..+|.+.+..+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi----------~Pd~~Ty~sLL~a~~k~G---~le~A~~l~~~M~k 782 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL----------CPNTITYSILLVASERKD---DADVGLDLLSQAKE 782 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 4678899999999999999999999988754321 122344443333333 34 36788888888765
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.059 Score=58.83 Aligned_cols=108 Identities=24% Similarity=0.311 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000196 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1874)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~f~ 592 (1874)
|+.||.-++.+++.+..+-+ .+++..++.+.. .+.|+++.||..++..|+. ...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---------------------~~ve~~~~~l~~-~L~D~~~~VR~~al~~Ls~Li~~d~i 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---------------------NLVEPYLPNLYK-CLRDEDPLVRKTALLVLSHLILEDMI 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---------------------HHHHhHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCce
Confidence 57899999999999886432 345555555544 5789999999999988741 00110
Q ss_pred hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC-CcCccchHHHHHHHHHHHHHh
Q 000196 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLE 650 (1874)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~ 650 (1874)
. ....++..+..++.|++++||..|..++..+... +|..+... +.+++..+.
T Consensus 59 k--~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~----~~e~i~~l~ 111 (178)
T PF12717_consen 59 K--VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNN----FPELISSLN 111 (178)
T ss_pred e--ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHHHh
Confidence 1 1123446666788999999999999999999988 77655444 445555554
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.25 Score=53.98 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
|+.++..+..++|-|+.. -+.+++..++.....|.+ .++..|..|+.++..|...-.--+. ++++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467889999999999885 456778888888888864 4567788899999998876333333 45566777888
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCC
Q 000196 204 RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN 251 (1874)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~ 251 (1874)
.|+++.||..|..++..+... +. +..+...++++...+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~---~~----~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK---RN----PNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh---cc----chHHHHHHHHHHHHHhCc
Confidence 999999999999988776542 11 234566667776666653
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.13 Score=67.75 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=132.2
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc
Q 000196 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF 188 (1874)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~ 188 (1874)
.++...+..-+. +.+-.-+..|.+.+.......+.....-...++...+.....|.+-+.-.-|+..|..||...+..+
T Consensus 252 ~ki~~~l~t~~~-s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEML-SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhh-ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 344333333332 3466778888888777666533222222223444444444455555566668889999999999999
Q ss_pred hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000196 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1874)
Q Consensus 189 ~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1874)
.+|...++|.++..+.|....+|+++..++...+.. .-+..+.+.+...+++.+ ...+......++..+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKL 399 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHH
Confidence 999999999999999999999999999988877652 124566777777787765 455666677888877
Q ss_pred Hcchh--hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 269 RNTGE--FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 269 ~~~~~--~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
+..+. .-.+....++..++...++++..||.++..+++.+...-+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 75442 2223455677777777778888888888888887765433
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.035 Score=58.89 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=95.4
Q ss_pred chhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH
Q 000196 592 DDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1874)
Q Consensus 592 ~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1874)
+||...|+.+..|+..++ +.+..+|..+++++|-|....| +-.+.+......-............ ..+.
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~~~~~~~~~~~~~~~-----~l~~ 72 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQKSLDSKSSENSNDESTDI-----SLPM 72 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccccCCccccccccccchhh-----HHhh
Confidence 466667888999888776 4579999999999999988765 3333221111100000000000000 0011
Q ss_pred HhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHH
Q 000196 671 RNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREV 749 (1874)
Q Consensus 671 ~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~ 749 (1874)
.........|. .-.+..|+..++|.+ ...-..+++.++-.+....|....+|+++++|.++..++... ...|+.
T Consensus 73 ~~~~~~~ee~y~~vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~ 147 (160)
T PF11865_consen 73 MGISPSSEEYYPTVVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREF 147 (160)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHH
Confidence 11111222333 346778888888863 333445667777777777888889999999999999999654 478888
Q ss_pred HHHHHHHHHh
Q 000196 750 AVSTLGQVVQ 759 (1874)
Q Consensus 750 A~~~Lg~l~~ 759 (1874)
-+.-|+.++.
T Consensus 148 ~~~qL~~lv~ 157 (160)
T PF11865_consen 148 YFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHH
Confidence 8888887764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0075 Score=44.06 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 195 FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 195 il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
++|.++..+.||++.||.+|+.+|+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998765
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.68 Score=57.72 Aligned_cols=229 Identities=11% Similarity=0.101 Sum_probs=140.7
Q ss_pred ccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh----cCCCCHHHHHHHH
Q 000196 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVL 795 (1874)
Q Consensus 720 g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l----~~~~~~~vr~~al 795 (1874)
.+++.|+..+++..++..+....+ ..-+-..+++-+++...+..+.|+. +.+++.|..++ ++..++..--=.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~--~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIA--VEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 467899999999999999975432 3445567888888888788788884 35666666555 5666677666666
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhH
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~ 875 (1874)
.++|.+-- +..+ .. +..-.-+...+++.+..+|..+- .+..
T Consensus 94 Esi~~lir---~~~~------------------~~-----------------~~~v~~~E~~L~P~f~~ILq~dV-~EF~ 134 (435)
T PF03378_consen 94 ESIGALIR---FVCE------------------AD-----------------PEAVSQFEEALFPPFQEILQQDV-QEFI 134 (435)
T ss_dssp HHHHHHHH---HS-G------------------GG-----------------HH---HHHHHHHHHHHHHHHTT--TTTH
T ss_pred HHHHHHHH---hccC------------------CC-----------------hhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 77666521 1000 00 00001234667777888886542 3677
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCC
Q 000196 876 QKVVGSLMFIFKSMG-LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSF 952 (1874)
Q Consensus 876 ~~v~~al~~i~~~~~-~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~ 952 (1874)
+.|+|-+..+++... ....+...+++|.++.-.--.....--.+...|..++..-...+. +++..|+.++.......
T Consensus 135 PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 135 PYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 889998888888765 345567777888877532111111122333444455544444443 67788888887776643
Q ss_pred CCCcccccccchhHHHHHHHHHHHhhh-hhhccchhhHHHHHHhccc
Q 000196 953 SLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998 (1874)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~l~~-~f~~yl~~llp~ll~~l~~ 998 (1874)
.. ....+.+++++...++. .+.||++.++..+++.|++
T Consensus 215 ~~--------D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 215 AN--------DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp TC--------HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred Cc--------chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 31 12578899999999987 4899999999999999975
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=6 Score=49.55 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+....+.|+++.|...+.++...++. ........+.++...|+ ..+|+..++.+++.-..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----------AEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999988765331 24556677788888884 67899988887653110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
......+..+..+|.-..+. ...++..+.|.++++.+|+...+|..+|.....
T Consensus 174 -----------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 226 (389)
T PRK11788 174 -----------------SLRVEIAHFYCELAQQALAR------GDLDAARALLKKALAADPQCVRASILLGDLALA---- 226 (389)
T ss_pred -----------------cchHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----
Confidence 01112344455566554432 457899999999999999988888888766443
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHH
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQI 1808 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQL 1808 (1874)
.+ -...|++-|-+++..+ +.+......++..++...|...+....+++.+..-|....+..+-++
T Consensus 227 ---~g-------~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 227 ---QG-------DYAAAIEALERVEEQD-----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL 291 (389)
T ss_pred ---CC-------CHHHHHHHHHHHHHHC-----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2335677777766543 23333445677788889898888777777766555543322333333
Q ss_pred HHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000196 1809 IARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1874)
Q Consensus 1809 iari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~ 1841 (1874)
..+.+..+ --..++.+..+.+|...-|-
T Consensus 292 ~~~~g~~~-----~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 292 LEEQEGPE-----AAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHhCCHH-----HHHHHHHHHHHhCcCHHHHH
Confidence 33333322 23345555566789876554
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.7 Score=55.57 Aligned_cols=208 Identities=16% Similarity=0.200 Sum_probs=120.8
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhh----cCccchh-chHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAEN----ASTVFNV-HVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~----~p~~~~~-~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~ 226 (1874)
-++.+++.|+.+.++..... .+.+|++. .-..+.. -+..++|.|...|++. ++.|.--|+.|+-.++++..
T Consensus 168 k~kkLL~gL~~~~Des~Qle---al~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLE---ALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHH---HHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 47788888887666655444 44555544 2223322 4678899999999876 58899999999998888765
Q ss_pred hcchhhHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000196 227 KRETRWRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1874)
Q Consensus 227 ~r~~~~~~~--~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~ 304 (1874)
+......+ .++.+++.++. -.=.|+.+-++.+|.-+-+-.+..+.. ..-+..++.+++-=+-.+|+.++.+
T Consensus 245 -~S~a~vV~~~aIPvl~~kL~~----IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 245 -RSSAIVVDEHAIPVLLEKLLT----IEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred -chhheeecccchHHHHHhhhh----hhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211111 22223322221 111345555666665554422211100 0012234455555556788888877
Q ss_pred hHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHhhchh---hhhhh-hHHHHHHHHHhhc
Q 000196 305 LPRIAHFL-RDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEMAGALDG---ELFHY-LPTITSHLREAIA 372 (1874)
Q Consensus 305 i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~~R--~~a~~alg~la~~v~~---~~~p~-l~~i~~~l~~~L~ 372 (1874)
....|... +++| +|+-+.+|.|.+.|...+.+ ..+..|+..++...-. .+... -.+++..+.+-+.
T Consensus 318 aaN~Cksi~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 318 AANCCKSIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHhcCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 77777643 4566 58899999999999876554 4666677777665432 22221 2456666666663
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.09 E-value=4.2 Score=51.26 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHH--HHhHhhc
Q 000196 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALR--AIDELID 98 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~--ai~~li~ 98 (1874)
+..-+..||+..+... ....+. +++++ .-...+.|...+..+++.+.-+-+.+...+|.-..+ -++.|-.
T Consensus 3 ~~~r~~~If~k~Q~s~agh~~kl---~~k~~----em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q 75 (892)
T KOG2025|consen 3 SLERMQLIFNKIQQSDAGHYSKL---LAKVM----EMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQ 75 (892)
T ss_pred HHHHHHHHHHHHHhhhcchHHHH---HHHHH----HhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhc
Confidence 3455677777775432 221211 22222 223333454444445554444556666666653322 2344433
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000196 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1874)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~ 178 (1874)
.+.++ ..+..+..||.+-.. ++|..||...++.+.++..-.+....++...+.+..+.-+. ++..+.|..|+.+|+
T Consensus 76 ~d~e~--DlV~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 76 LDKEE--DLVAGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALS 151 (892)
T ss_pred cCchh--hHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHH
Confidence 33222 234445555555554 67899999999999998874444555566666666666654 455688999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHHH
Q 000196 179 EMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALR 219 (1874)
Q Consensus 179 ~la~~~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~ 219 (1874)
.+-+...+-=.+-.+. +...+ .||+++||.+|...+.
T Consensus 152 rlQ~d~~dee~~v~n~----l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNL----LKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhcCCCCCcccHHHH----HHHHHhcCCcHHHHHHHHHhhc
Confidence 8875322211222222 22223 5999999999987553
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.47 Score=58.13 Aligned_cols=213 Identities=26% Similarity=0.311 Sum_probs=132.1
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+..++.+++..+|..|+..++.+-. .+.++.+.. ...|+++.||..+..+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~~---------------------------~~av~~l~~-~l~d~~~~vr~~a~~a 97 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELGS---------------------------EEAVPLLRE-LLSDEDPRVRDAAADA 97 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhch---------------------------HHHHHHHHH-HhcCCCHHHHHHHHHH
Confidence 445577788889999998876444311 222333322 4689999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC----------
Q 000196 585 LYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS---------- 653 (1874)
Q Consensus 585 l~~~~~f~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~---------- 653 (1874)
|+. +. .+..++.+...+. |++..||..+...|+.+..... +. .++..++...
T Consensus 98 Lg~---~~----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~~--------~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 98 LGE---LG----DPEAVPPLVELLENDENEGVRAAAARALGKLGDERA--LD--------PLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHc---cC----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--hH--------HHHHHhccchhhhhhhhccc
Confidence 963 11 1355666776666 8999999999999998877552 22 2222222210
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~ 733 (1874)
.....|..+...++.+.. +...+.+...+.+. ...++..+..+++.+.... ..+.+.
T Consensus 161 ~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~-----~~~vr~~Aa~aL~~~~~~~--------~~~~~~ 217 (335)
T COG1413 161 ALLDVRAAAAEALGELGD----------PEAIPLLIELLEDE-----DADVRRAAASALGQLGSEN--------VEAADL 217 (335)
T ss_pred hHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCc-----hHHHHHHHHHHHHHhhcch--------hhHHHH
Confidence 011234445544444421 22234455666654 5578888888888765432 566778
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
+...+.|. +..+|..++.+||.+ | ..+-...+...+..+ ++.++.......+
T Consensus 218 l~~~~~~~-~~~vr~~~~~~l~~~----~--------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~ 269 (335)
T COG1413 218 LVKALSDE-SLEVRKAALLALGEI----G--------DEEAVDALAKALEDE-DVILALLAAAALG 269 (335)
T ss_pred HHHHhcCC-CHHHHHHHHHHhccc----C--------cchhHHHHHHHHhcc-chHHHHHHHHHhc
Confidence 88888876 688999999999873 1 134566677767655 4555555444433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=11 Score=51.81 Aligned_cols=375 Identities=13% Similarity=0.053 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h-h-h--hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHh
Q 000196 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQK-E-L-D--VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398 (1874)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~-~-~--~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m 1398 (1874)
.+..+.....|..-.|+.+.+..++..... . . . ....+..+.+.|+|++|++.|++.+...++. .+...++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 356778899999999999999988875442 1 1 1 2334456899999999999999988754443 35567888
Q ss_pred HHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc-CCCC-cchh-hccccccccCCCCC
Q 000196 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL-DDGD-ESKL-RGLGNTAANGDGSS 1475 (1874)
Q Consensus 1399 ~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~ 1475 (1874)
.++...|+++.-....+..-.. .|+... ....+.+....|+.+.-....+.. ...+ .... ..++..+...
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---- 163 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN--LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---- 163 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 9999999998777666553221 222222 223356677788777755544433 1111 1111 1111111000
Q ss_pred chHHHHHHHHHHhcChhhhHHH-----HHHHHHHhH----------------hhhhHHHHHHh-hcCCCCCCchhhHHHH
Q 000196 1476 NGTFFRAVLLVRRGKVLESYER-----AYSNMVRVQ----------------QLSELEEVIDY-CTLPVGNPVAEGRRAI 1533 (1874)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~r-----ay~~l~~lq----------------~L~EleEii~~-~~~~~~~~~~~~~~~~ 1533 (1874)
+..-.|+..+.+....-.+.+ ....++++. .+.+++..++. ...+. ....
T Consensus 164 -~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~-------~~~~ 235 (765)
T PRK10049 164 -RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD-------ATAD 235 (765)
T ss_pred -CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc-------cchH
Confidence 000011111111000000000 111111111 22233333321 11111 0111
Q ss_pred HHHHHHHHhhhc--cCCHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc
Q 000196 1534 IRNMWTERIQGT--KRNVEVWQALLAVRALVLPP---TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608 (1874)
Q Consensus 1534 l~~~W~~Rl~~~--~~~~~~w~~iL~~R~~vl~~---~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~ 1608 (1874)
....+.+|+... ..+++.= +-..+.++-.. ......|+ +.+....|+++.|...+.++...++.. .
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA--~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~----~- 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDV--ISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETI----A- 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHH--HHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCC----C-
Confidence 222222222211 1122211 11223332211 12245554 889999999999999999887654321 0
Q ss_pred CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC
Q 000196 1609 YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG 1688 (1874)
Q Consensus 1609 ~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~ 1688 (1874)
..........+..+-.+| +..+|+..++.+......... .+..............++.+|.-....
T Consensus 307 -~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~-------~~~~~~~~p~~~~~~a~~~~a~~l~~~--- 372 (765)
T PRK10049 307 -DLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLR-------LYGSPTSIPNDDWLQGQSLLSQVAKYS--- 372 (765)
T ss_pred -CCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEe-------ecCCCCCCCCchHHHHHHHHHHHHHHc---
Confidence 001122222222333455 468999998887643211000 000000011112334555666665543
Q ss_pred CCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1689 LDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1689 ~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|.++....|....+|...|..... ++ ....|++.|-+++.+.
T Consensus 373 ---g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~-------~g-------~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 373 ---NDLPQAEMRARELAYNAPGNQGLRIDYASVLQA-------RG-------WPRAAENELKKAEVLE 423 (765)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cC-------CHHHHHHHHHHHHhhC
Confidence 457889999999999999999999888875332 11 2356777777777764
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.025 Score=57.21 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=77.4
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~ll 731 (1874)
+++..|+.++.+|+.++...++....++. .+++.+++.+.+. ++.++..++.+++.++...+....... ..++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 46788999999999999876555555555 6788888888874 788999999999999876543333333 3489
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 732 PLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 732 p~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
+.+++.+.+. +...|+.|+++|+.+++
T Consensus 94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 9999999876 57899999999998763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.2 Score=62.39 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 191 ~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
.....=+.|-..++|.+|.+|....-++.-. .. ....+...+.+++.+. +|.+ .++|.+|..++|.++..
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~----GTgnnkair~lLh~aV---sD~n-DDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALA--YV----GTGNNKAIRRLLHVAV---SDVN-DDVRRAAVIALGFVLFR 585 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHH--Hh----ccCchhhHHHhhcccc---cccc-hHHHHHHHHHheeeEec
Confidence 3334445555778899999998887655422 11 1123345556665543 3544 48999999999988764
Q ss_pred chhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH
Q 000196 271 TGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGE 347 (1874)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~ 347 (1874)
.++ .|..++..+ ++-|+.||..+.-++|..|+-.+. ...+..|-....++. .|..|+.+++.
T Consensus 586 dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 586 DPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred Chh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 443 334344444 578999999999999987765443 223333333333332 48999999999
Q ss_pred HHhhchhhhhhhhHHHHHHHHHhhcCCCC
Q 000196 348 MAGALDGELFHYLPTITSHLREAIAPRRG 376 (1874)
Q Consensus 348 la~~v~~~~~p~l~~i~~~l~~~L~~~~~ 376 (1874)
|.....+...|-...+-+.+...+.+++.
T Consensus 651 Im~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 651 IMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 88777777778888888888777766653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.025 Score=57.15 Aligned_cols=112 Identities=21% Similarity=0.114 Sum_probs=77.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
..++.+...+.|.+..+|..++.+++.++...|......++.-.++.+..+..+ ++++.+..++++|+.++...+....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 357777788888899999999999999999876544333331222333333334 5789999999999999987654333
Q ss_pred cchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 679 PYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 679 py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
.+.. .+++.++..+.+. +..++..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 3332 3677888888764 6778888888877664
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=7.9 Score=48.04 Aligned_cols=205 Identities=13% Similarity=0.190 Sum_probs=123.1
Q ss_pred cchhchHHHHHHHHHhhcCCc------------hhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh
Q 000196 187 VFNVHVAEFVDAIWVALRDPT------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l~D~~------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~ 254 (1874)
.|.||..+++..+...+.-|. -.-|....+.+..+.-++.+.+ .++.++-.+.. ++.+|
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e------~lk~~~~~l~e---~~~~W 403 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE------CLKQMYIRLKE---NNASW 403 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHcc---CCCch
Confidence 578999999999888776332 2558888888888877766332 23333333332 34479
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC
Q 000196 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI 334 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~ 334 (1874)
+..+|++..+..++......-.+.+.++++.+++. .. ...+|.+++.++|.+.++-... +.++..+..++...+..
T Consensus 404 e~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p~-Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-PE-QAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQL 479 (559)
T ss_pred HHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-cc-chhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhh
Confidence 99999999999988754433333444555555432 12 2239999999999998875432 23566777777666543
Q ss_pred CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCch--hHHHHHHHHHHhCC-CchHHHHHHHH
Q 000196 335 PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE--ALACVGNIARAMGP-VMEPHVRGLLD 406 (1874)
Q Consensus 335 ~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~--a~~~l~~l~~~~g~-~~~p~l~~ll~ 406 (1874)
..--.+|..+...++.++...+.+.++.+...++.......+. .. .++.++.+...... +..+.++++..
T Consensus 480 ~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 480 KRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEELCE 552 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHHhh
Confidence 3333456666666777776666666776666555433222111 22 33444444444443 34445554443
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=11 Score=49.57 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHhhccc----cc-ccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccc-----cchhhH
Q 000196 1041 APVDIRRAAIETLTRLIPR----VQ-VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT-----IFIPSI 1110 (1874)
Q Consensus 1041 ~~~~vr~~ai~~l~~l~~~----~~-~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~-----~~ip~i 1110 (1874)
....+|..|++.+....+- -| +-|.+....|+++..+...++-+-..|+.|+..+...-|.-.. .++|.+
T Consensus 815 e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 815 ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4677899999988765443 12 5677778888999999988999999999999888887663322 255666
Q ss_pred HHHHHh
Q 000196 1111 HKLLLK 1116 (1874)
Q Consensus 1111 ~~~l~~ 1116 (1874)
...+..
T Consensus 895 ~~~~~~ 900 (1014)
T KOG4524|consen 895 KHLCQD 900 (1014)
T ss_pred HHHHHH
Confidence 655444
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.17 Score=54.35 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhcC-CcCccchHHHHHHHH-----------HHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH
Q 000196 615 VREYAISVAGRLSEK-NPAYVLPALRRHLIQ-----------LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA 682 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~-----------~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~ 682 (1874)
||..|+.+|..+++. .|..+..++..++.+ +++.+..+ ++++.|..|+.++..+.+... +|+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D-p~~kvR~aA~~~l~~lL~gsk----~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD-PSPKVRAAAASALAALLEGSK----PFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC-CchhHHHHHHHHHHHHHHccH----HHHH
Confidence 789999999999998 555555666655433 34555566 688999999999999988754 3322
Q ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 683 PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 683 ~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
. ..+... ...+... .-.++|.+ +.++-..++..|+.+.+...-...+++++.+++.+.
T Consensus 77 ~--------Ae~~~~--~~~sFts-lS~tLa~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 77 Q--------AEESKG--PSGSFTS-LSSTLASM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred H--------HHhcCC--CCCCccc-HHHHHHHH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC
Confidence 1 222110 0111110 11122222 234444566677765555566677999999998876
Q ss_pred ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
|.--+-.-.++++..+...+.+ .+..+|.+++-++|.+-+..|
T Consensus 135 Y~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 135 YHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCC
Confidence 5422222345666666666655 467899999999998765543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=3.8 Score=51.39 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
++....+-.+++|.++|+++.|..++.++....|+ +......+..+++.|+ ..+|....++-+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----------~~~~~~La~~~~~~g~---~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----------AYDYAWLADALDRLHK---PEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 66788999999999999999999999999876552 3455789999999996 578888777644
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.3 Score=56.05 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=104.4
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchH--HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVA--EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~--~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
.++.++..|+..++...+..|+.+++..+...... ..+. ..++.|...|.+|++.||+.|..|+........+..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~- 89 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE- 89 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-
Confidence 46777777876666667777777777765432221 1111 356778889999999999999999987654322111
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
....+...+++.+..+ +-+.+.+.+++.+|..|.-. +....-+...+..++.++..++..+|..++.++-.|+.
T Consensus 90 -~Ik~~i~~Vc~~~~s~---~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 -QIKMYIPQVCEETVSS---PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred -HHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 1123455555555542 21235677888787776321 11122223344556677788999999999999988875
Q ss_pred hChhhHHHHHH-HHHHHHHHHhhcCCCCc
Q 000196 311 FLRDRFVTNYL-KICMNHILTVLRIPAER 338 (1874)
Q Consensus 311 ~~~~~f~~~yl-~~~~~~Ll~~L~~~~~R 338 (1874)
. +.. .+..+ .+++..++..+.+...+
T Consensus 164 n-p~~-~~~Ll~~q~~~~~~~Lf~~~~~~ 190 (254)
T PF04826_consen 164 N-PDM-TRELLSAQVLSSFLSLFNSSESK 190 (254)
T ss_pred C-HHH-HHHHHhccchhHHHHHHccCCcc
Confidence 3 221 22222 34455555555544333
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.67 E-value=11 Score=49.11 Aligned_cols=158 Identities=12% Similarity=0.182 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHH
Q 000196 251 NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHIL 329 (1874)
Q Consensus 251 ~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll 329 (1874)
++.|....+.+..+.++++..|+--.+.+...++..-+-. +..++..-.++..+||+++.|-.++- -|++..+|.|+
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~ 555 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLF 555 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHH
Confidence 3348888999999999998766544455555554443322 22377778899999999998866542 38899999999
Q ss_pred HhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--CchhHHHHHHHHHHhCC-CchHHHHHHHH
Q 000196 330 TVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1874)
Q Consensus 330 ~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~~a~~~l~~l~~~~g~-~~~p~l~~ll~ 406 (1874)
..|.+.+.-..+...+..+++....++.||.+.++....+.+...+.+. +..++.|+|.+.....+ ....|+..++.
T Consensus 556 ~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 556 QGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred HHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 9998877777888889999999999999999999999999886644332 45789999999998875 45668888888
Q ss_pred HHHh
Q 000196 407 IMFS 410 (1874)
Q Consensus 407 ~ll~ 410 (1874)
++++
T Consensus 636 ~il~ 639 (982)
T KOG2022|consen 636 PILS 639 (982)
T ss_pred HHHH
Confidence 8774
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=7.1 Score=49.54 Aligned_cols=248 Identities=12% Similarity=0.125 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHH--HHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI--VRQ 932 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~--~~~ 932 (1874)
...+++.++..++++.- -....+|+.+..+-..... ..-+-++.....+.+++.+-.++-.+..++..++.. +..
T Consensus 458 e~fiv~hv~P~f~s~yg-fL~Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~ 534 (970)
T COG5656 458 EYFIVNHVIPAFRSNYG-FLKSRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHE 534 (970)
T ss_pred HHHHHHHhhHhhcCccc-chHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhH
Confidence 35667777777887753 2345677666666333322 123445555555666665444666666667777654 345
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhc--------ccc-c--c
Q 000196 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVL--------SDA-E--R 1001 (1874)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l--------~~~-~--~ 1001 (1874)
.++.++|++|+-+...-+.-+. ..+-.++++++....+++.||.++++..+.+.+ .++ | .
T Consensus 535 k~sahVp~tmekLLsLSn~fei---------D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s 605 (970)
T COG5656 535 KFSAHVPETMEKLLSLSNTFEI---------DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSS 605 (970)
T ss_pred HHHhhhhHHHHHHHHhcccccc---------hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 6778899988888766554331 146678889999999999999999999888733 121 1 0
Q ss_pred -cCc-hhhHHHHHHHHHHHhcchh------hhhh-hhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHH
Q 000196 1002 -CND-YTYVLDILHTLEVFGGTLD------EHMH-LLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVH 1071 (1874)
Q Consensus 1002 -~~~-~~~~~~il~~l~~~g~~~~------~~~~-~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~ 1071 (1874)
..+ ...+..++.++.++--+++ .|+. .+.|.+-=+++.+ -.+.-+.|++.+...... -.+.|....|..
T Consensus 606 ~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~pimwgi~E 684 (970)
T COG5656 606 VVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEPIMWGIFE 684 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhhhhhHHHH
Confidence 111 2335667777766543332 2222 2344443333332 344555666655444332 224455556666
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHHHHHhccccc---cchhhHHHHHH
Q 000196 1072 HLKLVLDGKND-ELRKDAVDALCCLAHALGEDFT---IFIPSIHKLLL 1115 (1874)
Q Consensus 1072 ~l~~~l~~~~~-~l~~~al~~L~~l~~~~g~~f~---~~ip~i~~~l~ 1115 (1874)
.+..++.+... .--..+..+|..++.-.|..|. .|...+..+..
T Consensus 685 ll~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~ 732 (970)
T COG5656 685 LLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISK 732 (970)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHH
Confidence 66666665542 4456777888888777666664 24444444433
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.9 Score=50.60 Aligned_cols=146 Identities=13% Similarity=0.053 Sum_probs=98.7
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHH
Q 000196 79 ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMAL 158 (1874)
Q Consensus 79 ~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~ 158 (1874)
.+.-++.|.+.+..+..+..-..-...+....+...+.+=.. +.+..++..|+.+||+++.......-.+....+..++
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~-dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKAT-DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred chhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 345567788888877777543211111223333333222221 3456899999999999987523333335555666666
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 159 DWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 159 ~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
-.|-++.++..-+.|+..|..+.+... ..+.+|+-.+...+-....|.++.+|.+|.-+++++...-
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 666666667788888888888877744 5788888888888888888999999999999998876643
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.85 Score=52.38 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcc--h-hhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFD--D-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~--~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+++|+...-...|+.++..++.+++....|. . ...+...++.+...++++++.||..|+.++..++...+. ...+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHHH
Confidence 4556655556778999999888886432221 1 111224578888899999999999999999988765432 2233
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh--CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
...+.+.+..+...+-+...+..++++|..+.-. ....+..|++ .+++.+..+ +..++..++.++..|+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~----~ll~LL~~G-----~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIP----DLLSLLSSG-----SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHH----HHHHHHHcC-----ChHHHHHHHHHHHHhc
Confidence 4444444444433323456666778888877422 2233444444 445555544 5556667777777776
Q ss_pred Hhcccchhhc-H-HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccc
Q 000196 717 RVGGFGMRQY-I-SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 717 ~~~g~~~~~~-~-~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
..- .+.+. + .+.++.++..+....+.+.-..++.-+..+-.+.+.
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 531 11111 1 245666776676554455556666666666555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=5.4 Score=53.51 Aligned_cols=295 Identities=10% Similarity=-0.013 Sum_probs=161.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++.+....|.+..|+..++...... ++.......|..+|.+.|+++.+.-.++.+-.. .+ .......+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVN------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44555667888999998888776532 344566778899999999999998877754321 11 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1874)
...|++++|...|++.....+++. +..... ..+...|+|+.-....+..... .+..........+.+.+.+|+++
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~---~a~~~~-~~l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRG---DMIATC-LSFLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCH---HHHHHH-HHHHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHH
Confidence 899999999999987765544442 222232 3478889998777666543221 11011122234567888999999
Q ss_pred hHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCC
Q 000196 1445 QMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524 (1874)
Q Consensus 1445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~ 1524 (1874)
.-.......-.... ......+.-+......++..+-. -+.+..++.++... |+.
T Consensus 230 eA~~~~~~al~~~p--------------~~~~~~~~Lg~~l~~~G~~~eA~---------~~A~~~~~~Al~l~--P~~- 283 (656)
T PRK15174 230 EAIQTGESALARGL--------------DGAALRRSLGLAYYQSGRSREAK---------LQAAEHWRHALQFN--SDN- 283 (656)
T ss_pred HHHHHHHHHHhcCC--------------CCHHHHHHHHHHHHHcCCchhhH---------HHHHHHHHHHHhhC--CCC-
Confidence 87665553311000 00000011111222222221111 12233344444321 211
Q ss_pred CchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000196 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1874)
Q Consensus 1525 ~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1874)
..-...+ .+ +.....+++.-... .++.+ +.| ++...+..++.+..+.|+++.|...+.++...+|.
T Consensus 284 ---~~a~~~l--g~---~l~~~g~~~eA~~~--l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-- 350 (656)
T PRK15174 284 ---VRIVTLY--AD---ALIRTGQNEKAIPL--LQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-- 350 (656)
T ss_pred ---HHHHHHH--HH---HHHHCCCHHHHHHH--HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--
Confidence 1111111 01 00111222211111 12221 233 44677888899999999999999998888765442
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1604 ~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
.+.+..-.+..+...|+ ..+|+..++..+..
T Consensus 351 --------~~~~~~~~a~al~~~G~---~deA~~~l~~al~~ 381 (656)
T PRK15174 351 --------TSKWNRYAAAALLQAGK---TSEAESVFEHYIQA 381 (656)
T ss_pred --------chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence 23344445667778884 68899988886653
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=12 Score=48.18 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000196 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 281 ~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~ 354 (1874)
.+...+=++++|+...|...+..++-.+....+..+. +.+..|...+..++ .|-+|.+.|..+|+..+.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3444555667888999988888887777665555443 36667777777765 689999999999988765
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.45 E-value=12 Score=47.94 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcc--CCCchhhHHHHHHHHHHHHHH----hCCCCCCC--ccc--hhHHHHHHHhcCCcchhHHHHHHHH
Q 000196 855 STVAINSLMRILR--DPSLASYHQKVVGSLMFIFKS----MGLGCVPY--LPK--VLPDLFHTVRTCDDYLKDYITWKLG 924 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~--d~s~~~~~~~v~~al~~i~~~----~~~~~~~~--l~~--ilp~ll~~l~~~~~~~~~~~~~~l~ 924 (1874)
...++..|..+|. |+..... ..++.....+++. .|..-.|- +.. ++|.|..+++..++.+--.++..+.
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~-~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRD-INVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLIN 326 (464)
T ss_pred HHHHHHHHHHHHcccCcccccc-HHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHH
Confidence 3567788999994 3332211 1222222233332 33343443 344 9999999999777655545555555
Q ss_pred HHH
Q 000196 925 TLV 927 (1874)
Q Consensus 925 ~lv 927 (1874)
.++
T Consensus 327 ~ll 329 (464)
T PF11864_consen 327 RLL 329 (464)
T ss_pred HHH
Confidence 555
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.61 Score=55.71 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+..+++.|+.-++..+++.||..++++|+-+.-+|..++ .+.++.++..++.++.+||..|++++.++...++..+...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 557788888888999999999999999974434445444 2467777777766689999999999999988887654433
Q ss_pred HH--------HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 638 LR--------RHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 638 l~--------~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
.. ..+..++...-.+ .+++.+..|++.++-+.-+
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Confidence 33 2344555554444 4677888899988887644
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.26 E-value=4.9 Score=50.91 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
++-.+.+.+|+...|...|..||-+|-.+..- ++..+.|.++.|.+++. .+|...+..+-++|-.|.... +.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d---~k 129 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQD---PK 129 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcC---cH
Confidence 33355677899999999999888888877643 34468899999999997 567788888888888776641 22
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch--hchHH-HHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN--VHVAE-FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~--~~l~~-il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
..+..++..+..- ...++..|.-++.+|+.=....+ ..+. .-+.. |++.|-..|.| | +.+-+..+++
T Consensus 130 ~tL~~lf~~i~~~--~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D----V---TaeEF~l~m~ 200 (556)
T PF05918_consen 130 GTLTGLFSQIESS--KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD----V---TAEEFELFMS 200 (556)
T ss_dssp HHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHhc--ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh----c---cHHHHHHHHH
Confidence 2223333333210 12456678888877765444433 3444 23434 34556677776 2 2333455555
Q ss_pred HHh
Q 000196 224 VIE 226 (1874)
Q Consensus 224 ~i~ 226 (1874)
++.
T Consensus 201 lL~ 203 (556)
T PF05918_consen 201 LLK 203 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.31 Score=64.36 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000196 105 ASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la 181 (1874)
.+.+.+|++++..+... .+|++...+|.-+|||+.-. .++|.++.++-++..+...+....|--++.+++.+|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 45678898887766532 35799999999999999874 788999999999988876677788888999999999
Q ss_pred hhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 182 ~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
-.-|.++.|+- +.+..-|+|+++.||+.|...+..++
T Consensus 990 v~fpnlie~~T----~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 990 VRFPNLIEPWT----EHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hhcccccchhh----HHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99898877654 45668899999999999999887653
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.6 Score=51.90 Aligned_cols=290 Identities=11% Similarity=0.071 Sum_probs=134.1
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH
Q 000196 203 LRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY 279 (1874)
Q Consensus 203 l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~ 279 (1874)
|..++.-|...|+..+..++..-. ..........+++-+...+.++++.+.+..++.++..|++... -|....
T Consensus 110 L~~~d~~i~~~a~~iLt~l~~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~- 185 (429)
T cd00256 110 LNRQDQFIVHMSFSILAKLACFGL---AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD- 185 (429)
T ss_pred HcCCchhHHHHHHHHHHHHHhcCc---cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc-
Confidence 344566777777777766543211 1111122333444444444443334667777788888887432 111111
Q ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHHHHH--HHHHHHHHHhhcC-CCCc--chHHHHHHHHHhhc
Q 000196 280 REVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVTNYL--KICMNHILTVLRI-PAER--DSGFIALGEMAGAL 352 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~~~yl--~~~~~~Ll~~L~~-~~~R--~~a~~alg~la~~v 352 (1874)
....+...++.. +...+-.++-++=.++. .++ .++ .+ ..+++.+..+++. .++| ..++.++-++....
T Consensus 186 --~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~-~~~-~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 186 --GVPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPH-AAE-VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred --CHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHH-HHH-hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 223333333322 33444445544544443 222 222 12 4677777777764 3344 35666677766543
Q ss_pred hh-h-hhhhhHHHHH----HHHHhhcCCCCCCCchhHHHHHHHHHHhC----C--CchHHHHHHHHHHHhcCCCHHHHHH
Q 000196 353 DG-E-LFHYLPTITS----HLREAIAPRRGKPSLEALACVGNIARAMG----P--VMEPHVRGLLDIMFSAGLSTTLVDA 420 (1874)
Q Consensus 353 ~~-~-~~p~l~~i~~----~l~~~L~~~~~~~~~~a~~~l~~l~~~~g----~--~~~p~l~~ll~~ll~~~ls~~l~~~ 420 (1874)
.+ + -..+.+.+++ .+.+.|...+ =.++...+-+..+-+.+. + .|..|..++....+.++..-....-
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk-~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRK-YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 21 0 0112222222 1122222111 011233333333222222 1 3666777665544444210000111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC--CC
Q 000196 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK--GH 497 (1874)
Q Consensus 421 l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~--~~ 497 (1874)
+++=+..+..- .-.++..+..+|.. .+|+...+.||.=+|+| .+. |.
T Consensus 340 W~EN~~kf~~~----~~~llk~L~~iL~~--------------------------s~d~~~laVAc~Dige~vr~~P~gr 389 (429)
T cd00256 340 WRENADRLNEK----NYELLKILIHLLET--------------------------SVDPIILAVACHDIGEYVRHYPRGK 389 (429)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHhc--------------------------CCCcceeehhhhhHHHHHHHCccHH
Confidence 22111111100 01223333333311 11334567889989988 222 33
Q ss_pred cchhh--HHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 498 DLLEF--ARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 498 ~l~~~--v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
..... .++.+..++.|++++||+.|..++.+++..
T Consensus 390 ~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 390 DVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22211 456788999999999999999988887653
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=95.10 E-value=5.2 Score=49.35 Aligned_cols=326 Identities=13% Similarity=0.119 Sum_probs=154.4
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcH------HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYI------SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~------~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
...+...++.-+++|....+....-|. +.....++..|+.+ +......|...|..++...... .+-...+.+
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~ 144 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYY 144 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHH
Confidence 344555555555555554332111111 12233344455533 5667788888888887654321 111223446
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccch
Q 000196 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1874)
Q Consensus 775 l~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1874)
++.+...+++..+......++++++.+-..++|+...+.
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------------------------------------- 183 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------------------------------------- 183 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-----------------------------------------
Confidence 667777776554456677778888887766776532110
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHH-HHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHH----HHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIF-KSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYIT----WKLGTLV 927 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~-~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~----~~l~~lv 927 (1874)
.-.++.|+.+|+..+.. . +.-.+++..+. -+......+.+ ..++|.+...++.+. +|.+. ..+-.++
T Consensus 184 -~~~v~~L~~~L~~~~~~-~-Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~---KEKvvRv~l~~l~Nll 257 (429)
T cd00256 184 -ADGVPTLVKLLSNATLG-F-QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST---KEKVIRIVLAIFRNLI 257 (429)
T ss_pred -ccCHHHHHHHHhhcccc-H-HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh---hHHHHHHHHHHHHHHh
Confidence 00123444445432210 0 11122222221 11111122222 468888888888765 33222 1222222
Q ss_pred HHH-----HH-hHHH----hHHHHHHHHH-HhhcCCCCCcccccccchhHHHHHHHHHHHhhh------hhhccchhhHH
Q 000196 928 SIV-----RQ-HIRK----YLQELFSLIS-ELWSSFSLPATNRTYRGLPVLHLVQQLCLALND------EFRTHLPVILP 990 (1874)
Q Consensus 928 ~~~-----~~-~i~~----y~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~------~f~~yl~~llp 990 (1874)
... +. ...- =++.++..+. ..|... .+..-+..+...+.+ .|..|..++..
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De------------dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE------------DLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 211 00 0011 1223333332 234422 345555555555543 36667666555
Q ss_pred HHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHh-
Q 000196 991 CCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISS- 1068 (1874)
Q Consensus 991 ~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~- 1068 (1874)
-.++ .+...+++.. ...-...+++.-..++-.+.++++.+.++.+-..|+.=||.+++.....- .+..
T Consensus 326 g~L~-WSp~H~se~F---------W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l 395 (429)
T cd00256 326 GRLH-WSPVHKSEKF---------WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL 395 (429)
T ss_pred CCcc-CCCCCCCchH---------HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc
Confidence 3331 1211111110 01111122333345666777777544334444666777788877532111 1111
Q ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000196 1069 -LVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1069 -ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
.-..+.+.++.+|+++|..|+.|+.-|+.
T Consensus 396 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 396 GGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11224477788899999999999987754
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=12 Score=45.62 Aligned_cols=320 Identities=18% Similarity=0.233 Sum_probs=172.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
-+=+.|.|++|..+|+..++-.++... ....+--||..+|+|+.+.+.+..-.. .+|.+.+.+. -.|.|.=.||+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~epi---FYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl~-RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDEPI---FYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKALL-RRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHHH-HHHHHHHhhcc
Confidence 366789999999999999976665221 235678899999999999877754322 2344432221 23445556777
Q ss_pred hhhHHH--HHhhcCCC----Ccchh--hcc---cc----ccccCC---CCCchHHHHHHHHHHh----------------
Q 000196 1443 WDQMAE--YVSRLDDG----DESKL--RGL---GN----TAANGD---GSSNGTFFRAVLLVRR---------------- 1488 (1874)
Q Consensus 1443 Wd~~~~--~~~~~~~~----~~~~~--~~~---~~----~~~~~~---~~~~~~f~~a~~~i~~---------------- 1488 (1874)
.+.--. .+..+.++ ..... +.+ +. ...... .-+...|......+-.
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 665221 11111111 00000 000 00 000000 0011222222221111
Q ss_pred ----------cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH--hhhccCC----HHHH
Q 000196 1489 ----------GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTER--IQGTKRN----VEVW 1552 (1874)
Q Consensus 1489 ----------~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~R--l~~~~~~----~~~w 1552 (1874)
....|+|..+|+.+..-.-..|.+.... .+ ....+.+-....-| +.-...| .+..
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--------~~-d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--------EI-DAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--------cc-chhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 1145678888888765554444443221 11 01112222221111 1111111 2233
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchH
Q 000196 1553 QALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR 1632 (1874)
Q Consensus 1553 ~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~ 1632 (1874)
+.++.+.... ...+|+.+.+--..++-+...+.+.++..++|+ .|.|.+.++.+..-.+ +.
T Consensus 350 ~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~---q~ 410 (606)
T KOG0547|consen 350 DAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQ---QY 410 (606)
T ss_pred HHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHH---HH
Confidence 3333332222 234999999999999999999999999888774 3667776766666555 35
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1633 ~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
.+|+...++-+. +. .....+-+.+-++.+.. ..+.+.++.|+++++-.|+..
T Consensus 411 e~A~aDF~Kai~-L~-------------------pe~~~~~iQl~~a~Yr~--------~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 411 EEAIADFQKAIS-LD-------------------PENAYAYIQLCCALYRQ--------HKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHHHHHHhh-cC-------------------hhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCc
Confidence 677776665331 11 11223433333444442 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1713 KAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1713 k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
.++..+|.. +.. .+-.-.|++.|=++|.+.+
T Consensus 463 Evy~~fAei----LtD----------qqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 EVYNLFAEI----LTD----------QQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hHHHHHHHH----Hhh----------HHhHHHHHHHHHHHHhhcc
Confidence 998877744 221 1233478999999998864
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.035 Score=40.58 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcC
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1874)
+++.++.+++|++++||.+|+.+||++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367888999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.23 Score=52.89 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHh-CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH---HHhcccchhhcHHhHHHHH
Q 000196 659 REESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL---ARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 659 r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L---a~~~g~~~~~~~~~llp~l 734 (1874)
+-.|...+.+++++ .++.+.|.++.++..+...+..+ ++.|...++.+|..| ....|+.+.||+.+++|.+
T Consensus 55 ~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 55 RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45677788888888 78889999999999999999875 889999999999999 6778999999999999988
Q ss_pred HHH
Q 000196 735 VEA 737 (1874)
Q Consensus 735 ~~~ 737 (1874)
--.
T Consensus 130 n~f 132 (183)
T PF10274_consen 130 NLF 132 (183)
T ss_pred HHH
Confidence 643
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.96 E-value=18 Score=47.52 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=82.9
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1874)
+.+.++.+.+.|.=.++..+ ..|+.|...|.++. +....++..+++.+--=+-.+|+..|+.. --+++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M--~~G~dmssLf~dVi----K~~~trd~ElKrL~ylYl~~yak~~P~~~-----lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM--SLGEDMSSLFPDVI----KNVATRDVELKRLLYLYLERYAKLKPELA-----LLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHH--hcCCChHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHhccCHHHH-----HHHHHH
Confidence 55544434344433333333 34555666555554 44457899999988777777777666432 224455
Q ss_pred HHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 328 ILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 328 Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
+.+-+..++ .|+.|++.+|.+- +...++.+++.|++++.+.++.++..|.-|++.+-+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 555555554 4899999998862 2346677888899999888777777888898887764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=94.83 E-value=10 Score=47.73 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH--HhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVK--LLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
....-++.++-+.|+++.|...+.+ .....| .+......+.++|..|+ ..+|.+..++.+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----------~~~~~~~La~ll~~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----------DANDLAMAADAFDQAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6677899999999999999999984 444433 24556689999999996 5788888776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=49.55 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 000196 315 RFVTNYLKICMNHILTVLRIPA------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGN 388 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~ 388 (1874)
+|.++++=.++..+-..+.+.+ +|..++.++|.+....|+.+..+.|.|+..++.+|..+ +.+..++.||..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3555565566666666665432 47799999999999999889999999999999999543 445789999999
Q ss_pred HHHHhCC-CchHHHHHHHHHH
Q 000196 389 IARAMGP-VMEPHVRGLLDIM 408 (1874)
Q Consensus 389 l~~~~g~-~~~p~l~~ll~~l 408 (1874)
+...+.+ ++.|.++.++-.+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 9999886 4555555444333
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.71 E-value=21 Score=47.02 Aligned_cols=171 Identities=11% Similarity=0.078 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.++.|.=.++..+..|-. ++.+++.|++.+...+.++++--..=+. +.+...++......+..+.-
T Consensus 35 ~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~--------~yak~~P~~~lLavNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLE--------RYAKLKPELALLAVNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HHhccCHHHHHHHHHHHHhh
Confidence 455566667777776644 5566666666666666776654443222 22233445566677778888
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH-HH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC-MN 326 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~-~~ 326 (1874)
+.+++ ...|+.|+..++.+= +..-.+.++..+.++++|+++.||+.|.-++..+=..+++. .+.. .-
T Consensus 101 l~d~N-~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----~~~~g~~ 168 (757)
T COG5096 101 LQDPN-EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----YHELGLI 168 (757)
T ss_pred ccCCC-HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----hhcccHH
Confidence 88885 688888877776541 22233446666778889999999999999998887766653 3333 33
Q ss_pred HHHHhhc-CC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 327 HILTVLR-IP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 327 ~Ll~~L~-~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
.++..|- .. .....|+.++..+-.. ...+|...+...+
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 3344433 32 2345666666555333 2345554444333
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.5 Score=50.70 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=101.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc-hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC---c
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC---E 674 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~---~ 674 (1874)
..+..+...+++.+..-|-.++.+++.+++.++..++ ..-...+..++..++.. +....++.++..+..+.... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556677888999999999999999999999854433 54455555556666665 56677888898988887542 2
Q ss_pred ----cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHH
Q 000196 675 ----RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738 (1874)
Q Consensus 675 ----~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l 738 (1874)
+...|.++.+++.+++.+.+ ..+...++.++..+....+..++||..++-..+...+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 34578999999999998773 2355678889999999999999999998887776654
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.16 Score=49.73 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhhcC--C----CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHH
Q 000196 316 FVTNYLKICMNHILTVLRI--P----AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~--~----~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l 389 (1874)
|.+.++=.++.++-..+.+ . .+|..++.+++.+....|+.+.++.|.|+..++.++..+ +.+..+++||..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 5555555566666666544 1 157899999999999888888999999999999999554 4456899999999
Q ss_pred HHHhCC-CchHHHHHHHHHHH
Q 000196 390 ARAMGP-VMEPHVRGLLDIMF 409 (1874)
Q Consensus 390 ~~~~g~-~~~p~l~~ll~~ll 409 (1874)
.+.+++ ++.|.++.++-.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHH
Confidence 999986 57777766554443
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.77 Score=49.25 Aligned_cols=136 Identities=18% Similarity=0.153 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC
Q 000196 65 RFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGG 143 (1874)
Q Consensus 65 ~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g 143 (1874)
...+.+..++.++++|++...|-.|+..+..+++..+.+ ..+....|...|..++...+...+.+.|..++.+|....+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345567778889999999999999999999998763222 2244556677777777655567889999999999977532
Q ss_pred Cc---chH----HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 144 AM---TAD----EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 144 ~~---~~~----~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
.. .-+ .++..++.+++.+++ ......++.+|..+..+-|+.|.|+-.++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 22 212 233444444444432 3456788999999999999999999999887776543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.32 E-value=5.1 Score=50.76 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=137.3
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v 150 (1874)
+..|.+.++++ ...|.-|..-|-.+.... +....+..+-+..+.. +.|..||..|-+.|..++.. .+++|
T Consensus 25 y~~il~~~kg~-~k~K~Laaq~I~kffk~F----P~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~----~~~~v 94 (556)
T PF05918_consen 25 YKEILDGVKGS-PKEKRLAAQFIPKFFKHF----PDLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKD----NPEHV 94 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T------T-H
T ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHh----HHHHH
Confidence 44566777764 444544444444443322 2233445555666665 57899999999999999986 67788
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
...+..+.+.|+++.. ..+.+.-..|-.+....|.. -+..++..|... ...+..||+.+...|..-+.-+....-
T Consensus 95 ~kvaDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HHHHHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred hHHHHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 8888888888885543 23445555555565555541 222333333321 134567999988877654433321111
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh----hHHHHHHHHHHHHHHhh--c-----chhHHHH
Q 000196 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF----MMSRYREVAEIVLRYLE--H-----RDRLVRL 299 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~----~~~~~~~i~~~ll~~~~--~-----~~~~vr~ 299 (1874)
....+.-.-+.+.+...|.+-.. +.-+ .+-.++.+..-| -.+...++++.+....+ . ....|.+
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVTa-eEF~----l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idr 244 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVTA-EEFE----LFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDR 244 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--H-HHHH----HHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHhccH-HHHH----HHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 11123334455555555654221 1111 222444433221 23455566666664331 1 1233322
Q ss_pred H---HHHHhHhHhhh-ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh-hhhhhhHHHHHHHHHhhcCC
Q 000196 300 S---ITSLLPRIAHF-LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPR 374 (1874)
Q Consensus 300 ~---~~~~i~~la~~-~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~L~~~ 374 (1874)
. +-.++|-.+.. ....|+..+...++|.+-.. .+..|..-+..+.+++..+|. +....++.|.+.+...+...
T Consensus 245 li~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l--~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~ 322 (556)
T PF05918_consen 245 LISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL--PEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSK 322 (556)
T ss_dssp HHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC--ChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 2 23455554432 23567765556666643333 223466777888888877775 33467777888888777533
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.3 Score=52.00 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=95.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC-CcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH---HhCc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI---RNCE 674 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~---~~~~ 674 (1874)
.+++.++..+.+....-|-.|.+.+.++.+. .+..++|.+.+++..+-..+.. .+++....++.+|..++ ...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3578888888888878888888888888888 7778899999988888777765 47888888999999984 4568
Q ss_pred cccccchHHHHHHHHHHhhcc------CCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHH
Q 000196 675 RLIRPYIAPIHKALVARLLEG------TGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1874)
Q Consensus 675 ~~~~py~~~il~~ll~~l~~~------~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp 732 (1874)
+.+.||+..+++.+--..+.. ..-....++..-+-.++..|-+.+|++--..+.-.+|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IP 179 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIP 179 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCC
Confidence 899999999988876332221 0001234455666678888888888764443433333
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=94.02 E-value=6.4 Score=47.03 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred HHHHHHHhCccccccc--hHHHHHHHH-HHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC
Q 000196 665 LLGCLIRNCERLIRPY--IAPIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1874)
Q Consensus 665 ~L~~l~~~~~~~~~py--~~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~ 741 (1874)
....+.+.....+.|. +..+++.++ |.++.. ++.++..++.|+|-.+-.... ...+.++.+...++..
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~-----~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~ 76 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSS-----DPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKD 76 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhC
Confidence 3444555544445543 346676555 777654 778999999999988776553 4455666777777543
Q ss_pred cchhhHHHHHHHHHHHHhhccccc-ccccc------chHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 742 AAVTKREVAVSTLGQVVQSTGYVI-TPYNE------YPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 742 ~~~~~r~~A~~~Lg~l~~~~~~~i-~p~~~------~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
+..+|..|++++..++...|..+ ..... ...+++.+...+.++ +++++..+...+..+
T Consensus 77 -~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 77 -DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred -CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 67899999999999998888653 22221 246888899998777 677887777766654
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1 Score=54.51 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=109.3
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+..++.+.++-.|-..+.+++..+.-. + =..++..|+..+++|.+.+||++++-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GT-----------------g------n~~vv~~lLh~avsD~nDDVrRAAViA 575 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGT-----------------G------NLGVVSTLLHYAVSDGNDDVRRAAVIA 575 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcC-----------------C------cchhHhhhheeecccCchHHHHHHHHh
Confidence 34556666777888877666655444211 0 124566777888999999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 585 LYGNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 585 l~~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
|+- -+|+. ++.+...+..|.|. ++.||-.+.-+||-.+...+.. .-..+|..|.++ ...-.|+.|+
T Consensus 576 lGf-vc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D-~~dfVRQ~Am 642 (926)
T COG5116 576 LGF-VCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYD-TNDFVRQSAM 642 (926)
T ss_pred eee-eEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhC-cHHHHHHHHH
Confidence 862 22222 34455555666654 7899999988999877766532 334556666666 5667888899
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
-.++.+.-.+.+.+-|-+..|.+.+.+.+.+.
T Consensus 643 Ia~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 643 IAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 89999988888888888899999888888764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=42 Score=46.99 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhh-HHHHHH
Q 000196 1766 LQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQAL-MYPLLV 1844 (1874)
Q Consensus 1766 ~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~-ly~L~v 1844 (1874)
...---|+.++-+-|..++..+.+++.-..-....|-.++- ..|++. +....+.+.+-+.+ --|... .|-++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~--ac~~~~-~~e~~e~~a~~l~~---l~p~~~~~y~ll~ 698 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN--ACRIHR-HVELGELAAQHIFE---LDPNSVGYYILLC 698 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcC-ChHHHHHHHHHHHh---hCCCCcchHHHHH
Confidence 33444566666677776676666665422333556777666 235544 43344444433333 345433 344433
Q ss_pred HhcCCcHHHHHHHHHHHHHHhhc
Q 000196 1845 ACKSISNLRRAAAQEVVDKVRQH 1867 (1874)
Q Consensus 1845 ~~kS~~~~R~~~a~~Il~~~~~~ 1867 (1874)
-.- ....|-.-|.++.+.|+..
T Consensus 699 n~y-a~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 699 NLY-ADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHH-HHCCChHHHHHHHHHHHHc
Confidence 211 1223456677788877764
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.2 Score=52.08 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
+..+...+++.+..+|..|..++|..+.+||......+. ..+..++..+..+ ++...|..|+.+++.++++.+.....
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 444455889999999999999999999999964322221 1233344445544 56677889999999999987655444
Q ss_pred chH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
|.. .=...|.+.+.+.. .+..+..-++.-++.+.......-.-.-...++..+..+....+.+.++.|+.++-...
T Consensus 205 fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 322 11445666666531 24444555566666666543322222333445555555554445668888877766554
Q ss_pred hh
Q 000196 759 QS 760 (1874)
Q Consensus 759 ~~ 760 (1874)
..
T Consensus 282 ~~ 283 (342)
T KOG2160|consen 282 SE 283 (342)
T ss_pred HH
Confidence 43
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.3 Score=49.15 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=89.3
Q ss_pred HHHHHHhhhcc----CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC
Q 000196 1536 NMWTERIQGTK----RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG 1611 (1874)
Q Consensus 1536 ~~W~~Rl~~~~----~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 1611 (1874)
..|.+|+..-. ..-+.-+-+...+..+-.-.++.+.|..++.+....|+++.|..++.++..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------- 105 (198)
T PRK10370 36 RAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------- 105 (198)
T ss_pred HHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------
Confidence 45666654322 1122233344555555333466899999999999999999999999999988763
Q ss_pred ChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000196 1612 PPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~ 1690 (1874)
.+.+...++..+|.+ |+. ...+|...+++.+..-..+ ..-.-++|-++...|+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~dP~~---------------~~al~~LA~~~~~~g~---------- 159 (198)
T PRK10370 106 NAELYAALATVLYYQAGQH-MTPQTREMIDKALALDANE---------------VTALMLLASDAFMQAD---------- 159 (198)
T ss_pred CHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCCC---------------hhHHHHHHHHHHHcCC----------
Confidence 478888899987655 431 1378999998876532110 1112234444444444
Q ss_pred CCCHHHHHHHHHHHHhhcccc
Q 000196 1691 DESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
.++.+.+|+++.+..|..
T Consensus 160 ---~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 160 ---YAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ---HHHHHHHHHHHHhhCCCC
Confidence 567889999998887753
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.73 E-value=28 Score=44.67 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccc----h-HHHHH
Q 000196 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPY----I-APIHK 686 (1874)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py----~-~~il~ 686 (1874)
.++|..---.+.+++...|..++..+|+.+...+...+. ++...-|.|...+-.+.+..+.. +.-. . .+++.
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e--~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~ 490 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE--ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLF 490 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHH
Confidence 367887777888888888887777778766555543322 34566678899998888765421 1100 0 11222
Q ss_pred HHHHHhhccCCCC-CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC-----cchhhHHHHHHHHHHHHhh
Q 000196 687 ALVARLLEGTGIN-ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-----AAVTKREVAVSTLGQVVQS 760 (1874)
Q Consensus 687 ~ll~~l~~~~~~~-~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~-----~~~~~r~~A~~~Lg~l~~~ 760 (1874)
.+++.+-...... .++.|..-..+.+-.-. .|-.+-.+-+|.++.++-|. .+..+|..|-.-+.+++..
T Consensus 491 ~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~-----kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl 565 (980)
T KOG2021|consen 491 LNELLLMTSQVLAHDHELVQLLFMELIVRYN-----KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL 565 (980)
T ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHH-----HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH
Confidence 2222222111111 23444433333332211 23333455677777776542 2456888888888888888
Q ss_pred ccccccccccchHHHHHHHHHh
Q 000196 761 TGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 761 ~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
....+.||.+ +++..+-..|
T Consensus 566 Lkkqlvpfie--~iln~iqdlL 585 (980)
T KOG2021|consen 566 LKKQLVPFIE--EILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 7766677653 5566555555
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=21 Score=46.08 Aligned_cols=203 Identities=21% Similarity=0.283 Sum_probs=117.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-chHHHHHHHHHHHHHhhCC--CChHhHHHHHHHHHHHHHhC-
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSS--ADNKCREESAKLLGCLIRNC- 673 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~--~~~~~r~~a~~~L~~l~~~~- 673 (1874)
|.-+..++..+.|....||..++-.|..+++.||..- +-.+......++..++..+ +..-+-+.++.+|-.+.+..
T Consensus 165 P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 165 PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 3457778888999999999999999999999998531 1223444444444444431 12245677888888888753
Q ss_pred --ccccc--cchHHHHHHHHHH-hhccCCCCCChhHHHHHHHHHH---HHHHhcccchhh-------cHHhHHHHHHHHH
Q 000196 674 --ERLIR--PYIAPIHKALVAR-LLEGTGINANNGIISGVLVTVG---DLARVGGFGMRQ-------YISELMPLIVEAL 738 (1874)
Q Consensus 674 --~~~~~--py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~~~l~---~La~~~g~~~~~-------~~~~llp~l~~~l 738 (1874)
..+|+ .|++.+...|--. ..++.....++.-..++..++. .++.-+...-.. .-..++..++..+
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il 324 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL 324 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH
Confidence 23444 4555544332111 2221111123333344443433 333221111011 1124566666666
Q ss_pred hcC-cchhhHHHHHHHHHHHHhhcc-------cccccccc--chHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 739 LDG-AAVTKREVAVSTLGQVVQSTG-------YVITPYNE--YPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 739 ~d~-~~~~~r~~A~~~Lg~l~~~~~-------~~i~p~~~--~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+ -..+++..++-+++.++++.. .+..|+.. .|.++=.++.+....++...|.+++.|+-.
T Consensus 325 ~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 325 MHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 533 345677788888888877653 34456654 466777777777666788999999998755
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=93.43 E-value=33 Score=44.55 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCcc-ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHH
Q 000196 660 EESAKLLGCLIRNCER-LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEA 737 (1874)
Q Consensus 660 ~~a~~~L~~l~~~~~~-~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~ 737 (1874)
.-|..+|..++. -++ .-.|-+..-++.++..+.... ...+...++.++..++.. ++.-...+ ...+|.+++.
T Consensus 75 ~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s----~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 75 SLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSS----DLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCC----chhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHH
Confidence 345555555554 122 123556777888888887652 236667778888777732 22111111 2467777877
Q ss_pred HhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcccCccchhhhc
Q 000196 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1874)
Q Consensus 738 l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l----~~~~~~~vr~~al~~lg~lgaldp~~~~~~~ 813 (1874)
+.+ .....+.|+..+..++...+... ..+.+..+..++..+ +.. ....+-+.+..++.+=.-.|..
T Consensus 149 ~~~--~~~~~E~Al~lL~~Lls~~~~~~--~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~----- 218 (543)
T PF05536_consen 149 IPN--QSFQMEIALNLLLNLLSRLGQKS--WAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPIL----- 218 (543)
T ss_pred HHh--CcchHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCcc-----
Confidence 765 34578899999998887766432 223334444443333 322 2344555555555431111000
Q ss_pred ccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC
Q 000196 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~ 892 (1874)
+ .. .+ ...-+...+...|..+|+..-....+..+......++...|.+
T Consensus 219 --~----------------~~------------~~-~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 219 --P----------------LE------------SP-PSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred --c----------------cc------------cC-ChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 0 00 01 1112456777888899987655555666677777777777654
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.38 E-value=1 Score=51.16 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=94.8
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK 322 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~ 322 (1874)
++...|.+. +|+..-.++-.+..|.+...+-+.+.+.+++-.|+.-+++....|-+++|.+++.+..+-.....+ -++
T Consensus 92 ~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld 169 (334)
T KOG2933|consen 92 QALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELD 169 (334)
T ss_pred HHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 344455554 599888889999999887778899999999999998888888889999999999887654332221 233
Q ss_pred HHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC
Q 000196 323 ICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1874)
Q Consensus 323 ~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g 394 (1874)
.++-.|+.--...+ .|..|-.+|-.+...+.. ..+++.++.++....++.+..+..|+......+|
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 33333322111111 367888888887777654 2244455555555555555566667776666655
|
|
| >PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.3 Score=48.11 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCC
Q 000196 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRD 124 (1874)
Q Consensus 45 ~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d 124 (1874)
-.++.+.....++...+ ++......++.+++....|..|+..++...... + .....++...++..++
T Consensus 33 p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~~~ 99 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDIDN 99 (213)
T ss_dssp HHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccCCc
Confidence 34666666666665544 334455567888888888888888887765332 1 1255677777776666
Q ss_pred hHHHHHH-HHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 125 REILVLA-SKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 125 ~~v~~~a-a~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
-.+.+.. ..+++.+.... +...+.+.+|+.++..+.+|.|.+..+..+.. .+++.++..+-..+
T Consensus 100 W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc
Confidence 6777766 56677765431 23466788999988888888776665443332 67788888888999
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000196 204 RDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~ 222 (1874)
.|++..||.|...+|+.+.
T Consensus 165 ~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A. |
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=59 Score=46.54 Aligned_cols=242 Identities=16% Similarity=0.129 Sum_probs=150.6
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc-hhc
Q 000196 113 NYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF-NVH 191 (1874)
Q Consensus 113 ~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~-~~~ 191 (1874)
.++.+.+. ..++-.+-.++++++||+..-| .+.|+....+..+.-+.+-++...|..-.++++-+-...+... .++
T Consensus 879 ~l~~~sl~-~~~p~~rc~~~ea~arLaq~v~--~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 879 TLIVNSLI-NPNPKLRCAAAEALARLAQVVG--SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHhhhhc-cCChHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 34555553 4578888889999999998643 3457777788888888777888899998899988887765533 357
Q ss_pred hHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh-hccCCCC-hhHHHHHHHHH----
Q 000196 192 VAEFVDAIWVALRDPTL-AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD-GLGRNAP-VHSIHGSLLAV---- 264 (1874)
Q Consensus 192 l~~il~~i~~~l~D~~~-~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~-~l~~~~~-~~~~~~al~~l---- 264 (1874)
+.+-+..++...+|+++ .|+.-+..|+..+++-.. + ..--+....+.-+.. .+..+.. .++..+-=.++
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~---p-~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSG---P-MFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCC---c-eehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 77767777888899986 999999998886654221 1 111111111111111 1122111 11111111122
Q ss_pred --HHHHHcchhhhHHHH--------H-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 265 --GELLRNTGEFMMSRY--------R-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 265 --~~ll~~~~~~~~~~~--------~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
++++.+.|+.+.+.. + .......-.+.+.++.++.+++.++-.+.-|++... .++.+++.+...|.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLCSLLS 1108 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHHHHhc
Confidence 255555444333322 2 222222233467799999999999999998888632 35778888888776
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhhHHHH
Q 000196 334 IPA--ERDSGFIALGEMAGALDGELFHYLPTIT 364 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1874)
..- -|.+++.|+..++..--+....|-.-+.
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~ 1141 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLA 1141 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhh
Confidence 543 5788899999887766555555544333
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.97 E-value=9.7 Score=45.75 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=109.1
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCc---chHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcC
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAM---TADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENAS 185 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~---~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~~p 185 (1874)
+...|...++ .-|.+.++-++..++.+... .|+. ..+++....+.++.+|- +......-.-+-.+|++.+.+-+
T Consensus 77 ll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 77 LLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 3344555665 35899999999999999875 2332 35566655555666653 22222222333345555554311
Q ss_pred --c-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHH
Q 000196 186 --T-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLL 262 (1874)
Q Consensus 186 --~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~ 262 (1874)
. .++ ++.+..++.-+..++-.|-..|...++.++..-..-....-...|..++.....-+.++ ...++.-|+.
T Consensus 156 l~~~iL~---~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslk 231 (335)
T PF08569_consen 156 LAKIILY---SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLK 231 (335)
T ss_dssp HHHHHHT---SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHH
T ss_pred HHHHHhC---cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHH
Confidence 1 121 12233344566788888844444444444321110001122233455555444444454 4889999999
Q ss_pred HHHHHHH--cchhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 263 AVGELLR--NTGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 263 ~l~~ll~--~~~~~~~~~~~~--i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
.||+++. ..-..|..|..+ -+..++..+++++..||-.+.+++....+.
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999987 334567766654 455777888999999999999999876653
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=92.95 E-value=39 Score=44.60 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred ccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHH------HHHhcCHH
Q 000196 1298 CRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESW------YEKLQRWD 1371 (1874)
Q Consensus 1298 c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~------~E~lg~W~ 1371 (1874)
.|.+..|...+..-+.+ ++.....+..|..||.+.|+..-+.--+..+. ++..+-.+.| .+++|+|+
T Consensus 152 rg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHH
Confidence 36777888777655543 34446788999999999998776553333222 2222333555 69999999
Q ss_pred HHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1372 DALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1372 ~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
+|--||.+.++..+.. ++....++.=+.++|+...-
T Consensus 225 qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHH
Confidence 9999999999764432 56666677777777776433
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.64 Score=52.79 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=106.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
.|...+..|.+++.+..-.++..+.+|+.++|..+.+.|.++++..+..+++- . +..-..|+.+++++.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl-R-S~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL-R-SAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999999999999999999999999988764 2 334557888999999887766666
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
-.+..+..|+.+.... +.-|+..+-.+|..+...... ..+++.++..++.. ...+|..+..++...+.
T Consensus 167 ~ld~lv~~Ll~ka~~d-----nrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQD-----NRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 6666666666665543 556777777888777665432 24566666667654 45566666555554443
Q ss_pred hc
Q 000196 760 ST 761 (1874)
Q Consensus 760 ~~ 761 (1874)
..
T Consensus 235 rl 236 (334)
T KOG2933|consen 235 RL 236 (334)
T ss_pred ec
Confidence 33
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.76 E-value=51 Score=44.89 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=94.3
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh-cchhhHHHHHH-HHHHHHHhhccCCC
Q 000196 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQWYY-RMFEATQDGLGRNA 252 (1874)
Q Consensus 175 ~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~~~~-~i~~~~~~~l~~~~ 252 (1874)
.+|.++++..|..+.+++..+++ .+...+...|.+-.++++........ .+.....+-.. .+++.+...+.+-+
T Consensus 297 ~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs 372 (1251)
T KOG0414|consen 297 NFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS 372 (1251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 47788999999999999888887 45566788999988888776543321 11122222233 36777777777764
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
.-+|--++.++..|.+...... ....++...+.+.+.+++..||+.|+.++..+-...|
T Consensus 373 -a~vRskVLqv~~~l~~~~s~p~-~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 373 -AYVRSKVLQVFRRLFQQHSIPL-GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -HHHHHHHHHHHHHHHHccCCCc-cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 5678888888888877433222 2466788888888999999999999998887654444
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=92.70 E-value=32 Score=42.48 Aligned_cols=281 Identities=11% Similarity=0.147 Sum_probs=147.7
Q ss_pred ChhhhhhHHHHHhHhhccccCc-----chhHHHHHHHHHHhhccc-----C-CChHHHHHHHHHHHHHhhh---CCCcch
Q 000196 82 DAAENLGALRAIDELIDVALGE-----NASKVSKFSNYMRTVFEV-----K-RDREILVLASKVLGHLARA---GGAMTA 147 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~~~~-----~~~~~~~~~~~L~~~l~~-----~-~d~~v~~~aa~~lg~l~~~---~g~~~~ 147 (1874)
+-..|.-|-..+...+....+. ...++..+..++++=+.. . .|.++...|-+++|.+..+ ...+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 3344444444444444332111 133445555555544432 1 2678999999999998765 246778
Q ss_pred HHHHHHHHHHHhhhcCCCcc-hhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVE-YRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLR 223 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~-~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~ 223 (1874)
++..+.+..+++-+...... ..-..++.+|+. ++ .|..+.......+-.++..+.++ ...|-..+..++..++.
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 88888999999988644332 222333444332 23 44566666666555556666653 33443334444444433
Q ss_pred HHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000196 224 VIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 224 ~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
...+.-...-..|++.+++.+++..+ +++..|+.++..+....+ ++..+-+.+..
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k-----~ir~~a~~l~~~~~~~l~--------------------~~~~~s~~~~~ 218 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAK-----DIRTKAISLLLEAKKCLG--------------------PNKELSKSVLE 218 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHHHHHhC--------------------hhHHHHHHHHH
Confidence 22211112334699999888876332 345544433332221111 12222222222
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhh-h--hhhhHHHHHHHHHhhcCCCCCCCc
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGE-L--FHYLPTITSHLREAIAPRRGKPSL 380 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~-~--~p~l~~i~~~l~~~L~~~~~~~~~ 380 (1874)
.+..-- .+..|+ +.+...|...+...++-..|.+.=+.+...+|.. + -+|++..+.....++...++..+.
T Consensus 219 ~~~~~~--~~~~~~----~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~ 292 (372)
T PF12231_consen 219 DLQRSL--ENGKLI----QLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI 292 (372)
T ss_pred Hhcccc--ccccHH----HHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence 222110 111233 2333444444443222234444444444444542 2 378899999999999776655667
Q ss_pred hhHHHHHHHHHHhCC
Q 000196 381 EALACVGNIARAMGP 395 (1874)
Q Consensus 381 ~a~~~l~~l~~~~g~ 395 (1874)
.|+.||..+.....+
T Consensus 293 ~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 293 QAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999887665
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.68 E-value=2 Score=50.79 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCC
Q 000196 1245 SQKHLVQSLEMAFSSPNI-PPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN 1323 (1874)
Q Consensus 1245 ~~~~l~~~l~~~l~~~~~-p~~i~~~ll~l~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~ 1323 (1874)
.++..+..++..+..+.. .+++++.+. +.+-...|.|..||.+++.. .
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~--------------------A~i~~~~~~~~~AL~~l~~~-----------~ 129 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLA--------------------ATILFHEGDYEEALKLLHKG-----------G 129 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHH--------------------HHHHCCCCHHHHHHCCCTTT-----------T
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHH--------------------HHHHHHcCCHHHHHHHHHcc-----------C
Confidence 355667777777766543 233333322 23334566777888877543 1
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhhhcHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhh
Q 000196 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQLKESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLG 1396 (1874)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~~~~~~~E-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g 1396 (1874)
..+++-..+.||-.+|++|.|...++..++. .-.++.+.|.- ..| ..++|.-.|++..+..+.. +....|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHH
Confidence 2466677899999999999999999876532 22455566632 223 5889999999865432221 455689
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh-hhHHHHHhhcC
Q 000196 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW-DQMAEYVSRLD 1454 (1874)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W-d~~~~~~~~~~ 1454 (1874)
+..|...+|+|++-....++-... ++.....++. .+-++..+|+. +..++|++.+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaN-liv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLAN-LIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHH-HHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHH-HHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999998777666654322 2333333343 45688899999 77888988775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=92.53 E-value=13 Score=43.03 Aligned_cols=233 Identities=16% Similarity=0.191 Sum_probs=130.3
Q ss_pred CcchhHHHHHHHHHHHHhhcCc-cc-hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENAST-VF-NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE 242 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~-~~-~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~ 242 (1874)
.++..|.-|+.+|..+.+..|. .+ ...+.-+++-....|.|.. .+..+ ..++.++... . .........++.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~-~----~~~~~~~~~i~~ 83 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKM-K----NFSPESAVKILR 83 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhC-c----CCChhhHHHHHH
Confidence 4567889999999999999885 34 3467777777778885544 34444 5555554421 1 111222334444
Q ss_pred HHHhhccCCC-ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHh-hhChhhHHHH
Q 000196 243 ATQDGLGRNA-PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIA-HFLRDRFVTN 319 (1874)
Q Consensus 243 ~~~~~l~~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la-~~~~~~f~~~ 319 (1874)
.+.+...-+. ....|.....++..+++...+.+...=.+.+..++... ..++|.--..+..+++.+. .|...+|.+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~ 163 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAED 163 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4443222111 24568888889988888654444322233444444433 3567766666777777765 3554556655
Q ss_pred HHHHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 320 YLKICMNHILTVLRIPA-E-----RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 320 yl~~~~~~Ll~~L~~~~-~-----R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
+++.+..|.==..+.+. + |..--.+|.. +..... .|-+..++.+.+-|..........+++++...+..+
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~-cl~s~~---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRN-CLSSTP---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHH-HhcCcH---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 54444444322233222 1 1111111111 111112 244556677777775554445567888888888899
Q ss_pred CC-CchHHHHHHHHHH
Q 000196 394 GP-VMEPHVRGLLDIM 408 (1874)
Q Consensus 394 g~-~~~p~l~~ll~~l 408 (1874)
|. .+.||+..+-..|
T Consensus 240 ~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 240 GADSLSPHWSTIWNAL 255 (262)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 87 5788887766554
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.52 E-value=15 Score=43.39 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=106.5
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHH
Q 000196 79 ESNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVK 155 (1874)
Q Consensus 79 ~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~ 155 (1874)
.+.+..+|.+++--|.-++.-- ++++.+..+ ..-|...+. ..|.++|..|++++|..+......+..+++. -+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4578889999988888886532 233333322 223333554 4689999999999999988632222222222 234
Q ss_pred HHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchh
Q 000196 156 MALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 156 ~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~--~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
.++..+..+.+...|..|+.+++.+..+-+..... -++. ...+..+|.++ +...+.-|..-++.++..-. .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s-- 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--S-- 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--h--
Confidence 44455556777788999999999999886542221 2222 45566788774 45555666666665543211 1
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 232 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.....-...++.....+..+.++++...++.++-.++.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 11111122333333334444446667777766655554
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=56 Score=48.09 Aligned_cols=359 Identities=11% Similarity=0.089 Sum_probs=184.3
Q ss_pred HHHHHHHHHhhhcCCcCcc---chHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc--ccc--cchHHHHHHH
Q 000196 616 REYAISVAGRLSEKNPAYV---LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER--LIR--PYIAPIHKAL 688 (1874)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v---~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--py~~~il~~l 688 (1874)
|.-++.-|..++.+|..-+ .+.+-.++.+.+...-.. .+...+..|...|..++-..-+ .+. .|-..++..+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4455556666666665432 233333444443333222 2344555566656566543211 111 1234566777
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc--c
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI--T 766 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i--~ 766 (1874)
...+... .+..++.-++.|+..|....++.+..=-..++.++-.+..+.+ ...=..|..++..++...-..+ .
T Consensus 1188 e~im~~s----~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~-e~iV~lAFetl~~I~~d~f~~l~~~ 1262 (1780)
T PLN03076 1188 VIVMRKS----NAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH-KNIVLLAFEIIEKIIREYFPYITET 1262 (1780)
T ss_pred HHHHHhc----CchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 6666643 3678999999999999988888887777788888877776553 3344568888888775432222 1
Q ss_pred ccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-c--CccchhhhcccCCCcccccccCCCCCCCCCCcccccccc
Q 000196 767 PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA-L--DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1874)
Q Consensus 767 p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga-l--dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1874)
+..-+..++.++.++.+...+..+-..|+..+..++. + .+.... ......+...+.+.... ...... ..+
T Consensus 1263 ~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~----~~~~~~~~~~~~s~~~~--~~~~~~-~~~ 1335 (1780)
T PLN03076 1263 ETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS----SRNKDKEAPPSSPQSGK--DGKQES-GEF 1335 (1780)
T ss_pred chhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc----ccccccccccccccccc--cccccc-ccc
Confidence 2345678888888887655455666666666665431 0 110000 00000000000000000 000000 000
Q ss_pred CCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCC-C----ccchhHHHHHHHhcC-------
Q 000196 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP-Y----LPKVLPDLFHTVRTC------- 911 (1874)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~-~----l~~ilp~ll~~l~~~------- 911 (1874)
. .......++ -.++..|..+..|+. .+++..+++.+-.|+...|..+.| + +.+++-.++..++..
T Consensus 1336 ~-~~~~~~~lW-~pLL~~Ls~l~~D~R-lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1336 T-DKDDHLYFW-FPLLAGLSELSFDPR-PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred c-cchhHHHHH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 0 000001122 134455666566654 356778999999999999988765 3 466777777777632
Q ss_pred ----------Cc--c----hhHHHHHHHHHHHHHHHHhH---HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000196 912 ----------DD--Y----LKDYITWKLGTLVSIVRQHI---RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1874)
Q Consensus 912 ----------~~--~----~~~~~~~~l~~lv~~~~~~i---~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1874)
.+ . +.+....+|..+++...+++ .+.++.++.++......... .....-..++..
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~------~la~ig~~~l~~ 1486 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ------SLAGIGIAAFVR 1486 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHH
Confidence 00 1 23444445555555555443 35666666666655443220 011122444455
Q ss_pred HHHHhhhhhhc-cchhhHHHHHHhc
Q 000196 973 LCLALNDEFRT-HLPVILPCCIQVL 996 (1874)
Q Consensus 973 l~~~l~~~f~~-yl~~llp~ll~~l 996 (1874)
+...-+..|.+ .+..++..+.+++
T Consensus 1487 li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1487 LMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55555555544 3444444444443
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=75 Score=45.61 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=79.0
Q ss_pred CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 000196 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1874)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1874)
.++..+..+..+++.++.+.|. .+|+..+...+++.+.+..+...|..-.-++|.+-++.|.. .+..++-.-+..++
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~-~s~qhl~t~v~ill 964 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI-GSGQHLNTSVSILL 964 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC-CCchhcccHHHHHH
Confidence 3677777888899999998775 57888888999999988777778888889999998888875 45555556566777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh
Q 000196 780 KMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 780 ~~l~~~~~~~vr~~al~~lg~l 801 (1874)
...++..++.|+.-+++.+..+
T Consensus 965 al~~Ds~~p~VqtwSL~al~~i 986 (2067)
T KOG1822|consen 965 ALATDSTSPVVQTWSLHALALI 986 (2067)
T ss_pred HHhhcCCCchhhhhHHHHHHHH
Confidence 7777777889999999888764
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.8 Score=52.55 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHH-HHhCCCCHHHHHHHHHHHHhhhcCCcCc
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIF-AALNDEDFDVREYAISVAGRLSEKNPAY 633 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1874)
.++.++++.+| ..|.|+..|..-.-+++. .|... ....+++.++ .+.+|.+.+||++|+-+||-++-..|..
T Consensus 514 qe~add~I~el----l~d~ds~lRy~G~fs~al--Ay~GT-gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~ 586 (926)
T COG5116 514 QEMADDYINEL----LYDKDSILRYNGVFSLAL--AYVGT-GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL 586 (926)
T ss_pred HHHHHHHHHHH----hcCchHHhhhccHHHHHH--HHhcC-CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcch
Confidence 35566666555 478888888765554431 00000 0123455554 4588999999999999999888777543
Q ss_pred cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHH
Q 000196 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1874)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1874)
+ ...+.-|..+ .++..|.-.+-+||-.+...+.. ..+..|-+.+.|. ..-|+++++.+++
T Consensus 587 l--------v~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~-----~dfVRQ~AmIa~~ 646 (926)
T COG5116 587 L--------VGTVELLSES-HNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDT-----NDFVRQSAMIAVG 646 (926)
T ss_pred h--------hHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCc-----HHHHHHHHHHHHH
Confidence 2 2223333344 56778887788888877666632 2233344444443 6778999999999
Q ss_pred HHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 714 DLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 714 ~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
.+.....+.+.|.+..+...+.+.+.|. ++.++.-||.
T Consensus 647 mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K-----he~glaklGA 684 (926)
T COG5116 647 MILMQCNPELNPNVKRIIKKFNRVIVDK-----HESGLAKLGA 684 (926)
T ss_pred HHHhhcCcccChhHHHHHHHHHHHHhhh-----hHhHHHHHHH
Confidence 9888888899999999999999888753 4445555553
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.2 Score=51.96 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=108.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-chHHHHHHH---HHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc
Q 000196 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLI---QLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~---~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
+.|+.+|+-.+.+||..|..++-.+...-.... .......|. ..+..|..+ +-+..|..|...+..+....=..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHc
Confidence 345666667778888888877766554332211 111122221 133334445 567888888877776665443333
Q ss_pred ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.| .|+.-++.++-|+-..+..++|+.+++.++..++.+ ...-+-+.+++|.+-..|+|. +..+|-+++.-|..+
T Consensus 256 P~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~-se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDN-SEKVRVAFVDMLLKI 329 (1005)
T ss_pred CH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhcc-chhHHHHHHHHHHHH
Confidence 33 455555555554322234567888999999988753 445677889999999999987 577999888887765
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHH
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRRE 793 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~ 793 (1874)
-..-. +.-+...| ++.++..|.+++.+..|+.
T Consensus 330 k~vra--~~f~~I~~--~d~~l~~L~~d~~~v~rr~ 361 (1005)
T KOG1949|consen 330 KAVRA--AKFWKICP--MDHILVRLETDSRPVSRRL 361 (1005)
T ss_pred Hhhhh--hhhhcccc--HHHHHHHHhccccHHHHHH
Confidence 33221 12222222 5667777777655444543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.65 Score=55.16 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=68.5
Q ss_pred HHHHHHhhcCChHHHhHHHH-HHhchhhhh------hcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHH
Q 000196 1330 ALIHINNQLHQHEAAVGILT-YAQKELDVQ------LKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLA 1402 (1874)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~-~~~~~~~~~------~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~ 1402 (1874)
.+..++-+.|+++.+..+++ ......+.. .....++.+|++++|..+|++.+...+.. ......++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---PQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccc-c
Confidence 45777778888888888774 222210111 12233688999999999999887543221 1223334444 5
Q ss_pred HhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHH
Q 000196 1403 ALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRA 1482 (1874)
Q Consensus 1403 ~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a 1482 (1874)
..++++.-...+...|... ++ .......+..+.+.++|+.....+........ ...+..||..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~ 151 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD-GD--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLA 151 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHH
T ss_pred ccccccccccccccccccc-cc--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHH
Confidence 6777777766666655432 11 22334556778899999999998886432110 0122334433
Q ss_pred --HHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHH-HH
Q 000196 1483 --VLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLA-VR 1559 (1874)
Q Consensus 1483 --~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~-~R 1559 (1874)
......|+. ..| +.-++.+++. .|++ ..-+ ..-.|. + .-..+.+.-..++. +.
T Consensus 152 ~a~~~~~~G~~----~~A---------~~~~~~al~~--~P~~----~~~~--~~l~~~--l-i~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 152 LAEIYEQLGDP----DKA---------LRDYRKALEL--DPDD----PDAR--NALAWL--L-IDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHCCHH----HHH---------HHHHHHHHHH---TT-----HHHH--HHHHHH--H-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH----HHH---------HHHHHHHHHc--CCCC----HHHH--HHHHHH--H-HHCCChHHHHHHHHHHH
Confidence 333334431 111 1112222221 1111 1110 111221 1 11112221111111 11
Q ss_pred HhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000196 1560 ALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1874)
Q Consensus 1560 ~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l 1639 (1874)
... ..+...|..++....+-|+.+.|...+.++...+| .+|.+...++..++..|. ..+|....
T Consensus 208 ~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p----------~d~~~~~~~a~~l~~~g~---~~~A~~~~ 271 (280)
T PF13429_consen 208 KAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP----------DDPLWLLAYADALEQAGR---KDEALRLR 271 (280)
T ss_dssp HH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST----------T-HHHHHHHHHHHT---------------
T ss_pred HHC---cCHHHHHHHHHHHhccccccccccccccccccccc----------cccccccccccccccccc---cccccccc
Confidence 111 23456788899999999999999999999887655 368999999999999995 57888877
Q ss_pred HHHHH
Q 000196 1640 QTLAM 1644 (1874)
Q Consensus 1640 ~~~~~ 1644 (1874)
+....
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=51 Score=48.48 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=79.3
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHH-HH---HH----HHHHHHHhhccC--------------C-----CCh
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRV-QW---YY----RMFEATQDGLGR--------------N-----APV 254 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~-~~---~~----~i~~~~~~~l~~--------------~-----~~~ 254 (1874)
...|+.++||..|...|-.++..- .....+ -| +. .+++.+...... + +.|
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL~~y---G~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W 1431 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTLRNH---GHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW 1431 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH
Confidence 345999999999999887776432 222222 23 22 223333221110 0 013
Q ss_pred hHHHHHHHHHHHHHHcchh---hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000196 255 HSIHGSLLAVGELLRNTGE---FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~---~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1874)
. .+....+|..+++.-.. .+.+.+++++..+..+....+..+-+.-+.++-.+..-....|.+..|..++..+...
T Consensus 1432 l-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1432 L-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 2 46667777777653322 2333444555555555666788888888888888888788888888888888888777
Q ss_pred hcC
Q 000196 332 LRI 334 (1874)
Q Consensus 332 L~~ 334 (1874)
.+.
T Consensus 1511 f~~ 1513 (1780)
T PLN03076 1511 ANA 1513 (1780)
T ss_pred HHH
Confidence 653
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=91.95 E-value=11 Score=43.27 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=107.3
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
...+.++.+....+++|..-...+. ...+.+++.+....+..+.+.+..+..++.++...++..+ |.+++++......
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 4566777777777777742111111 2234567777777777777778889999999999998754 8888877654433
Q ss_pred HhhCC----CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchh
Q 000196 649 LEQSS----ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR 724 (1874)
Q Consensus 649 l~~~~----~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~ 724 (1874)
...+. ...+..-..+..+..+++..|+ +..+++..+...+++. .++.+...++.++..+.+..--++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhhccHH
Confidence 22210 1111122234466677777666 5666777777777321 2555666667777776643333333
Q ss_pred hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 725 ~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
+...-+.|.+ +.+.|-.-+++|+.++...+.--.....|+.+-..++..+
T Consensus 159 s~w~vl~~~l--------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 159 SAWKVLQKKL--------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred HHHHHHHHhc--------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 3333333322 2234444455555544433322122234555555555444
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=91.71 E-value=31 Score=40.09 Aligned_cols=240 Identities=13% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
+-+.+++.+...|..|+..+...+.--..+ ..+.+.-+.+|...-+ .|...+..|.+++..|+.. .....+...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---~D~~~~~~~l~gl~~L~~~-~~~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---DDHACVQPALKGLLALVKM-KNFSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---ccHhhHHHHHHHHHHHHhC-cCCChhhHH
Confidence 345677889999999999999987653222 3445666667666655 3778888889999888854 234444555
Q ss_pred HHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 152 FQVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 152 ~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
..++.+++... .......|.....++..+.++-+..+...=+.++..++..+. +.+|+-=--+.+-+..++....
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---
Confidence 66666665443 223346799999999999888655554444556666665552 3334322223333333322211
Q ss_pred hhhHHHHHHHHHHHHHhhc----cCC-CCh--hHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGL----GRN-APV--HSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSI 301 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l----~~~-~~~--~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~ 301 (1874)
. .+....+++.+...+ .-+ ++. -.+..=-.+|...+... +.|. -.++.++..+++..+.++..+
T Consensus 157 --~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 157 --I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred --c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHHHHHHHHHHHHcCCCcHHHHHH
Confidence 2 344556666655543 111 111 01111111222222222 3333 356678888888888899888
Q ss_pred HHHhHhHhh-hChhhHHHHHHHHHHHHHH
Q 000196 302 TSLLPRIAH-FLRDRFVTNYLKICMNHIL 329 (1874)
Q Consensus 302 ~~~i~~la~-~~~~~f~~~yl~~~~~~Ll 329 (1874)
+.++...+. |.+.... .|+..+-..|.
T Consensus 229 L~tL~~c~~~y~~~~~~-~~~~~iw~~lk 256 (262)
T PF14500_consen 229 LQTLKACIENYGADSLS-PHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHCCHHHHH-HHHHHHHHHHH
Confidence 887776543 4444333 35555554443
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.72 Score=44.93 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=67.3
Q ss_pred HHHHHccCCC---chhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHH
Q 000196 861 SLMRILRDPS---LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRK 936 (1874)
Q Consensus 861 ~Ll~iL~d~s---~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~ 936 (1874)
..-..+.|.. ....+..++.++..+++..|.....+++||+-.+...++ .+++++.++.....++..+ ..++.|
T Consensus 15 ~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ 92 (107)
T smart00802 15 VFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGP 92 (107)
T ss_pred HHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3334455554 334567899999999997776556677777777777665 4569999999999999887 468899
Q ss_pred hHHHHHHHHHHhhc
Q 000196 937 YLQELFSLISELWS 950 (1874)
Q Consensus 937 y~~~i~~~i~~~~~ 950 (1874)
.++.++..+..+|.
T Consensus 93 ll~~~~~~i~~~~~ 106 (107)
T smart00802 93 LLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999986
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=91.52 E-value=9.1 Score=50.03 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC
Q 000196 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES 1693 (1874)
Q Consensus 1614 ~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~ 1693 (1874)
+-.+..|..+.++|+ .++|..++.++++.-. .....|..+|+-..+. .+
T Consensus 140 ~~ll~eAN~lfarg~---~eeA~~i~~EvIkqdp----------------------~~~~ay~tL~~IyEqr------Gd 188 (895)
T KOG2076|consen 140 RQLLGEANNLFARGD---LEEAEEILMEVIKQDP----------------------RNPIAYYTLGEIYEQR------GD 188 (895)
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCc----------------------cchhhHHHHHHHHHHc------cc
Confidence 345678899999995 7899999999886421 1222344444443332 23
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
.+..+.....|.+++|+.+.-|..||...-+ ..++..|.-+|-|+|++. ....+.+.+=-
T Consensus 189 ~eK~l~~~llAAHL~p~d~e~W~~ladls~~--------------~~~i~qA~~cy~rAI~~~------p~n~~~~~ers 248 (895)
T KOG2076|consen 189 IEKALNFWLLAAHLNPKDYELWKRLADLSEQ--------------LGNINQARYCYSRAIQAN------PSNWELIYERS 248 (895)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh--------------cccHHHHHHHHHHHHhcC------CcchHHHHHHH
Confidence 5667788888999999999999999966332 247889999999999985 34588899999
Q ss_pred HHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccC---CChhHHHHHHHHHHHHH-----hhCchhhHHHHHHH
Q 000196 1774 TLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHS---NNRAVRELIQSLLVRIG-----QSHPQALMYPLLVA 1845 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~---~~~~v~~~l~~ll~~i~-----~~hPqa~ly~L~v~ 1845 (1874)
+|.-++|+...-.+.+.+-+...|+.-| .++-++|=+.-| .......++..|--.+. -.+|++=+|..+..
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~-er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDI-ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 9999999988777788888888884333 344455554211 11112233333333333 35677777777666
Q ss_pred hcC
Q 000196 1846 CKS 1848 (1874)
Q Consensus 1846 ~kS 1848 (1874)
.++
T Consensus 328 ~~~ 330 (895)
T KOG2076|consen 328 KNK 330 (895)
T ss_pred HhH
Confidence 544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=91.52 E-value=19 Score=40.66 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....+...+....+.|+++.|...+.++...+|. .+......+.+.+.+|+ ..+|++.++..+....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------DYLAYLALALYYQQLGE---LEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 3678899999999999999999999988765442 34666778888888885 5789988887664311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA--TKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~--~~~~k~w~~wA~~n~~~ 1725 (1874)
. . ...+..+|...... ...++..+.|.++.+.. +.....|..+|......
T Consensus 97 ~------------------~----~~~~~~~~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 97 N------------------N----GDVLNNYGTFLCQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred C------------------C----HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 0 0 11223333333222 24577888888887643 34456676666554321
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
+ -...|+..|-+++...+ ........+-.+++..|+.++....+++.+.
T Consensus 149 -------g-------~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 149 -------G-------DFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred -------C-------CHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23367778888777642 2233455666777777877766666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.4 Score=41.65 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHHhhc----chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 000196 273 EFMMSRYREVAEIVLRYLEH----RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEM 348 (1874)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~~~----~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~l 348 (1874)
+|+.+++-.++..+-..+.+ ++..-|+.++..|+.+-+..+. .+..+.+++|..|...++.+..|..|+.|-..+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~-~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS-HISSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 45555555555444333333 5566788899999998885444 556688999999999998888899999999999
Q ss_pred Hhhchh-hhhhhhHHHHHHHHHhh
Q 000196 349 AGALDG-ELFHYLPTITSHLREAI 371 (1874)
Q Consensus 349 a~~v~~-~~~p~l~~i~~~l~~~L 371 (1874)
...++. ++.|+++.++-.+...+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999976 57788888777666543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.32 E-value=3.6 Score=46.17 Aligned_cols=168 Identities=16% Similarity=0.239 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC------CHHHHHHHHHHHHhhhcCCc
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE------DFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~------~~~VR~~a~~~l~~l~~~~p 631 (1874)
++.|+..| ..+.+...|.+++++|..+. -+ ...++..+..++|. +.++-...+...-.|..+.-
T Consensus 199 F~kvisal----~dEs~~~~r~aAl~sLr~ds----Gl--hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 199 FDKVISAL----LDESDEQTRDAALESLRNDS----GL--HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhccCc----cH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 44444444 45778899999999996422 22 22455555554442 23334444455555555444
Q ss_pred CccchHHHHHHHHHHHHHh-----hCCCC---hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChh
Q 000196 632 AYVLPALRRHLIQLLTYLE-----QSSAD---NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1874)
Q Consensus 632 ~~v~p~l~~~l~~~l~~l~-----~~~~~---~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1874)
-++-|++.++|..+++.+- +++.+ -..|.-|+.+++-+.+..++..+..-+.+...+++.+-|... ..+
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k---~~s 345 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK---TES 345 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc---ccc
Confidence 4566999999888887653 22111 126778999999999988887777777888888888777532 223
Q ss_pred HHHHHHHHHHHHHHhc-ccchhhcHHhHHHHHHHHH
Q 000196 704 IISGVLVTVGDLARVG-GFGMRQYISELMPLIVEAL 738 (1874)
Q Consensus 704 v~~~~~~~l~~La~~~-g~~~~~~~~~llp~l~~~l 738 (1874)
..-+++.++..|.... ...+.|.++-....+.+.|
T Consensus 346 T~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktl 381 (450)
T COG5095 346 TQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTL 381 (450)
T ss_pred hhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHH
Confidence 3345666666554321 1223444444443443444
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.91 E-value=92 Score=44.05 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=59.5
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
.+.-+.|-+.+||.+++......+...+... .... .++..-..|.|+++|......+.
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~------------------~~~~----~~~~l~~~~~D~~~rir~~v~i~ 362 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSIA------------------KAST----ILLALRERDLDEDVRVRTQVVIV 362 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchhh------------------hHHH----HHHHHHhhcCChhhhheeeEEEE
Confidence 3444566788999998888777776543210 1011 11222235677777766555443
Q ss_pred CCC--CcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC
Q 000196 587 GNR--GFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1874)
Q Consensus 587 ~~~--~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1874)
.+. .|.-.+. +..+..+-.-+.|....||..|+.-+.++-++
T Consensus 363 ~~~v~~~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 363 ACDVMKFKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EeehhHhhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 2221111 22666777778899999999999988876663
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.90 E-value=5.2 Score=47.27 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=72.8
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhH
Q 000196 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHI 934 (1874)
Q Consensus 856 ~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~-~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i 934 (1874)
..+-..|-+.|.-.-.+-+|..+.+....||+.+|... ...+.-..|.++-.+..+.-.+|..++..+-..+--++..+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 45667777878554456789999999999999998864 45677777888777777766666666554444443444455
Q ss_pred HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh
Q 000196 935 RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE 980 (1874)
Q Consensus 935 ~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~ 980 (1874)
+|.++.++..+.-.+.... ......++.+++.+..+++..
T Consensus 133 ~p~l~~li~slLpGLede~------sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEG------SEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHhccccccCC------chHHHHHHHHHHHHHHhcChh
Confidence 5555555444443333211 011124555555555555554
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=90.74 E-value=64 Score=41.94 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=133.9
Q ss_pred CcHHHHHHHHHHHcCCCCchhhHHHH-HHHHHHHHHhhhChHHH--HHHHHHHH-HHHHhhhcCCC-------hhhhhhH
Q 000196 21 GSLDALNRILADLCTHGNPKEGASLA-LRKHIEEQARDLGGEAF--SRFMDQLY-DRISGLLESND-------AAENLGA 89 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~~~~aa~~-l~~~v~~~~~~~~~~~~--~~~~~~l~-~~i~~l~~s~~-------~~~r~~~ 89 (1874)
..++.+.+.++-|+++.++.+=|+.- +.+++ ..-+.+.. ++.++.+- +.+..|+++.. ..-+--|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~----~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLL----DADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 35678999999999987443324332 22232 22221111 12333332 22444555411 2223335
Q ss_pred HHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcc
Q 000196 90 LRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE 167 (1874)
Q Consensus 90 i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~ 167 (1874)
+..+.++..-+.-- .+.++.+...++ .++....+.++...+.++|..++.++.+ ...+++. -++.+.+.+.. ..
T Consensus 78 vsvL~~f~~~~~~a~~~~~~~~IP~Ll-e~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~--~~ 153 (543)
T PF05536_consen 78 VSVLAAFCRDPELASSPQMVSRIPLLL-EILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN--QS 153 (543)
T ss_pred HHHHHHHcCChhhhcCHHHHHHHHHHH-HHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh--Cc
Confidence 55555554432111 234444444444 4443334558899999999999865311 1112221 34445555443 23
Q ss_pred hhHHHHHHHHHHHHhhcCc-c---chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAENAST-V---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK--RETRWRVQWYYRMF 241 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~-~---~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~--r~~~~~~~~~~~i~ 241 (1874)
....-|+.+|..+...... . -...+..+++.+-..+...+...+-..++-|..++..... ......+.|...+.
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 3455677777666554332 2 1345566777777777666666666666666666543310 11124567998888
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1874)
..+.+-+.+.-....|..++.+...+++..|
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 8888777766557789999999999988544
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.72 E-value=7.1 Score=43.76 Aligned_cols=186 Identities=21% Similarity=0.182 Sum_probs=103.7
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----------cchHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----------VLPALR 639 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----------v~p~l~ 639 (1874)
..+.++.||..+-++|+. .++ ++.++.+-...+|+..+||+++--++.++--..... +-|.-+
T Consensus 78 desq~pmvRhEAaealga--~~~-----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGA--IGD-----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred ccccchHHHHHHHHHHHh--hcc-----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 356788999999999862 222 456777777778999999998777776654332110 111100
Q ss_pred ---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 640 ---RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 640 ---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
..+.++-..+.......-.|..|...|-++ + .+.-+..+...+.++ +.-++..+..++|.|-
T Consensus 151 ~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----g------~EeaI~al~~~l~~~-----SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDETKPLFERYRAMFYLRNI----G------TEEAINALIDGLADD-----SALFRHEVAFVFGQLQ 215 (289)
T ss_pred cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----C------cHHHHHHHHHhcccc-----hHHHHHHHHHHHhhcc
Confidence 000000001111000011122221111111 0 122344445555543 4556667777777764
Q ss_pred HhcccchhhcHHhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 717 RVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 717 ~~~g~~~~~~~~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
. +.-+|.+.+.|.|. ++..+|..|+.+||.++. ++.++.|-..+.++ .+-||..+.
T Consensus 216 s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------e~~~~vL~e~~~D~-~~vv~esc~ 272 (289)
T KOG0567|consen 216 S----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------EDCVEVLKEYLGDE-ERVVRESCE 272 (289)
T ss_pred c----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------HHHHHHHHHHcCCc-HHHHHHHHH
Confidence 3 35577888888763 467899999999998752 35677777777655 567887765
Q ss_pred HHHHH
Q 000196 796 KVLGI 800 (1874)
Q Consensus 796 ~~lg~ 800 (1874)
-++..
T Consensus 273 valdm 277 (289)
T KOG0567|consen 273 VALDM 277 (289)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=90.71 E-value=45 Score=40.16 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=95.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCc--chhHHHHHHHHHHHHhhcCccch----hchH
Q 000196 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV--EYRRFAAVLILKEMAENASTVFN----VHVA 193 (1874)
Q Consensus 120 ~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~--~~~r~aA~~~l~~la~~~p~~~~----~~l~ 193 (1874)
|...|++|....+..+.++-..-....+..++..+...++.+.++-. ...|.+=-.+++.+.++|+..+. ..+.
T Consensus 85 p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~ 164 (319)
T PF08767_consen 85 PDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK 164 (319)
T ss_dssp GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH
T ss_pred ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 33578999998888888876654455667777777777777764332 46788888899999999988654 3678
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH----HHHHHHHHHhhccCC
Q 000196 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1874)
Q Consensus 194 ~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~i~~~~~~~l~~~ 251 (1874)
.+++.|.-|+++++..|-+.+.+++..+++.+..........+ +..++..+...+.|+
T Consensus 165 ~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 165 LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 8899999999999999999999999999888775333333344 444455555555554
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=90.56 E-value=46 Score=40.05 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 169 RRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
.|..-+.++.....++++ .....++.+++.++.--++..|..|+.- ...+..+...+.+.-....+..+..+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455566666667777664 2345777778877777777778888764 333334444444332345567778888877
Q ss_pred HhhccCCC--ChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh----
Q 000196 245 QDGLGRNA--PVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD---- 314 (1874)
Q Consensus 245 ~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~---- 314 (1874)
..-+.++. -++.|.+--..++.+.+.+.+.+ .+.+..+++.++-..+|.++.|....+.++..+......
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77665432 26888888888999888654432 247788899999999999999999999888887654332
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCCCC
Q 000196 315 ---RFVTNYLKICMNHILTVLRIPAE 337 (1874)
Q Consensus 315 ---~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1874)
.|.+.|+-.++..++..+.+...
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 56667777778888887766543
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.46 E-value=38 Score=38.91 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=137.0
Q ss_pred CCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCC
Q 000196 495 KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA 573 (1874)
Q Consensus 495 ~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~ 573 (1874)
.|..+.|-.+..+...+-+++..|..-|.+.++.++...- .+ .-+. ...++ +++++.++. .+...
T Consensus 75 egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcD-----------tn-aVse-illvvNaeilklild-cIgge 140 (524)
T KOG4413|consen 75 EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCD-----------TN-AVSE-ILLVVNAEILKLILD-CIGGE 140 (524)
T ss_pred cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCc-----------hh-hHHH-HHHHhhhhHHHHHHH-HHcCC
Confidence 3555555555555666777788887767666666654211 00 0000 11222 344444443 56667
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHH-hCCC----------CHHHHHHHHHHHHhhhcCCcCccchHHH-HH
Q 000196 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA-LNDE----------DFDVREYAISVAGRLSEKNPAYVLPALR-RH 641 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~-l~D~----------~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~ 641 (1874)
|.+|-.++++++..-..| |.-+..+|.. ++|+ +.-+|..++.++-.+....|......-. ..
T Consensus 141 ddeVAkAAiesikrialf------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALF------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred cHHHHHHHHHHHHHHHhc------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 788888888877521122 2334444421 1221 2246777778887777777653221111 23
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHh-CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH---
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR--- 717 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~--- 717 (1874)
+.++..+++.. .|.-.+....++...+++. .+..+.|. ..+++.+-..+...+ .+|--.-.++...|.+..
T Consensus 215 ldlLeaElkGt-eDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad---sdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGT-EDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD---SDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCC-cceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC---CCcHHHHHHHHHHHHHhcchH
Confidence 34455666665 5666778888888888864 23333221 234444444444321 122222222333333221
Q ss_pred ---hcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccch-HHHHHHHHHhcCCCCHHHHHH
Q 000196 718 ---VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP-QLLGLLLKMLNGELVWSTRRE 793 (1874)
Q Consensus 718 ---~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p-~ll~~Ll~~l~~~~~~~vr~~ 793 (1874)
+..+.+..-+.-.+.-.++++.. .+++..++|+.++|.+-+++...--....-| ..=..+.++.....+ .-..+
T Consensus 290 imdvseeaicealiiaidgsfEmiEm-nDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah-akqea 367 (524)
T KOG4413|consen 290 IMDVSEEAICEALIIAIDGSFEMIEM-NDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH-AKQEA 367 (524)
T ss_pred HhhcCHHHHHHHHHHHHHhhHHhhhc-CCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc-chHHH
Confidence 11122222222222222333332 2566788999999998777654310011123 233333444432222 23456
Q ss_pred HHHHHHHhcc
Q 000196 794 VLKVLGIMGA 803 (1874)
Q Consensus 794 al~~lg~lga 803 (1874)
+++++..+..
T Consensus 368 aihaLaaIag 377 (524)
T KOG4413|consen 368 AIHALAAIAG 377 (524)
T ss_pred HHHHHHHhhc
Confidence 7788776643
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=90.45 E-value=5.1 Score=48.09 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc-h---HHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-P---ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p---~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
.+.+..|...+..-+++.|..+..+++.+....+..=. | ++.....+++..+....+.++..-.+..+|-+.++.-
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 46778888888888899999999999999888765422 2 2322112222222111022333333333333333220
Q ss_pred --ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----ccchhhcHHhHHHHHHHHHhcCcchhhH
Q 000196 674 --ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVTKR 747 (1874)
Q Consensus 674 --~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~llp~l~~~l~d~~~~~~r 747 (1874)
...+.. ++.+..+...+.. .+-++.+.++.++.++.... .+.+..+++.++..+...|... +--.|
T Consensus 155 ~l~~~iL~--~~~f~~ff~~~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 155 SLAKIILY--SECFWKFFKYVQL-----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHHHHHHT--SGGGGGHHHHTTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHHHHhC--cHHHHHHHHHhcC-----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 000000 1122223333333 36778888899998876543 3456677778888666666544 55667
Q ss_pred HHHHHHHHHHHhhccc--cccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 748 EVAVSTLGQVVQSTGY--VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~--~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
..+++-||.+...-.. ++.-|..-|+-|..++.+|++. +..++.+|+.++-..-|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 7899999998854433 3466777799999999999754 88999999999876543
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=2.9 Score=43.84 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
|...+..+..++..|+ ..+|+..++..+.. .. . ...--..+|.++..+|+|
T Consensus 24 p~~~~~~g~~~~~~g~---~~~A~~~~~~al~~-~P--~------------~~~a~~~lg~~~~~~g~~----------- 74 (144)
T PRK15359 24 PETVYASGYASWQEGD---YSRAVIDFSWLVMA-QP--W------------SWRAHIALAGTWMMLKEY----------- 74 (144)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CC--C------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4445667888888885 68899988876532 10 0 011123355566666655
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
++.+..|..|++++|++..+|+.+|...... + -...|++.|-+++.+.+
T Consensus 75 --~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~-------g-------~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 75 --TTAINFYGHALMLDASHPEPVYQTGVCLKMM-------G-------EPGLAREAFQTAIKMSY 123 (144)
T ss_pred --HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------C-------CHHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999875542 1 12368999999998853
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=6.2 Score=41.32 Aligned_cols=111 Identities=13% Similarity=-0.061 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000196 1572 WLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1874)
Q Consensus 1572 wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~ 1651 (1874)
|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- ...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l-~p~-- 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------SWRAHIALAGTWMMLKE---YTTAINFYGHALML-DAS-- 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhc-CCC--
Confidence 556788888999999999999998887663 46788889999999994 68999999887642 110
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
...-.-.++.|+..+|+ .++.+..|..|++.+|+....|..-+....
T Consensus 91 ------------~~~a~~~lg~~l~~~g~-------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 ------------HPEPVYQTGVCLKMMGE-------------PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ------------CcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 01111234555554444 578899999999999999999976665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.06 E-value=2.2 Score=51.08 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=74.6
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH------------HHhhhccCCC----
Q 000196 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV------------MSHYTLRGLP---- 1735 (1874)
Q Consensus 1672 a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~------------~~~~~~~~~~---- 1735 (1874)
+-+..+.|+=..++. +....+.+|+.|++++|..|+||+.++..+.-+ ...-+. .++
T Consensus 364 ~~aWTLmGHEyvEmK------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~ 436 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMK------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWV 436 (559)
T ss_pred hHHHHHhhHHHHHhc------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHH
Confidence 445777777667764 347789999999999999999998776654321 111100 000
Q ss_pred -----CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1736 -----SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1736 -----~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
+....-...||+||-+++.++. ..-.-..||=.|.-+.++..+....+++++.
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1123456899999999999862 2223468888888888888777776766653
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=90.04 E-value=12 Score=46.76 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=128.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcc
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT 146 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~ 146 (1874)
.+..++.++++|+|+++|..--..+-.+.+-..+. ...++ .+.+.+.+.+.......-+...-+.+|.+... .-...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 46777889999999999986555555554322122 22222 22333333333233445566677788887764 22455
Q ss_pred hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.++..+....+++......-......=..++..+.+.-|++..+.+..++. .|.. .++.-.| -.|+.+.+++.
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~-t~s~Kev-----~FL~el~~il~ 284 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPK-TNSQKEV-----LFLNELEEILE 284 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-S-S-HHHHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCC-CCchhHH-----HHHHHHHHHHH
Confidence 777777777777776654444444445556666677777766554444442 2332 2222221 22333333333
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSI 301 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~vr~~~ 301 (1874)
.-++..-......++..+...+.++. ..+...|+...+.= .--..+..+-+.+++.++..+ +|=+..||..+
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h-~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPH-FQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 22233344566777888888887775 55666665543210 000122223333444444443 34588999999
Q ss_pred HHHhHhHhhhChhhHH
Q 000196 302 TSLLPRIAHFLRDRFV 317 (1874)
Q Consensus 302 ~~~i~~la~~~~~~f~ 317 (1874)
..++..+...+++-|-
T Consensus 362 ~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 362 QNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHhCHHHHH
Confidence 9999999998887664
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=89.76 E-value=14 Score=41.64 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred hchHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1874)
..+.-.|+.+..+|.|. +...|+||.++|+.=..+ .+..+.+..-+-+++.+.+++ -+.-..-+.+...|+
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGl-----hQLvPYFi~f~~eqit~Nl~n---l~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESLRNDSGL-----HQLVPYFIHFFNEQITKNLKN---LEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-----HHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHh
Confidence 34444556666666554 678999999987631111 123445555566666666654 244555556777888
Q ss_pred HcchhhhHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHhHhHhhhChhhHHHHHH---HHHHHHHHH-hhcC
Q 000196 269 RNTGEFMMSRYREVAEIVLRYLE----------HRDRLVRLSITSLLPRIAHFLRDRFVTNYL---KICMNHILT-VLRI 334 (1874)
Q Consensus 269 ~~~~~~~~~~~~~i~~~ll~~~~----------~~~~~vr~~~~~~i~~la~~~~~~f~~~yl---~~~~~~Ll~-~L~~ 334 (1874)
.+..-|+.||+.++++.++.++- |..-.+|..+..+++.+.. .|...|- +++...++. .|++
T Consensus 265 ~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~----~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 265 KNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS----NFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred cCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh----hhhHhhhhhchHHHHHHHHHHHhc
Confidence 87778899999999887776541 1223478878887777653 4544442 455555444 3444
Q ss_pred CCCc---chHHHHHHHHH
Q 000196 335 PAER---DSGFIALGEMA 349 (1874)
Q Consensus 335 ~~~R---~~a~~alg~la 349 (1874)
.+.- -.|+.+++-+.
T Consensus 341 ~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 341 EKTESTQYGALKGLSILS 358 (450)
T ss_pred ccccchhhhhhhhhhhhc
Confidence 4432 34555555543
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=89.76 E-value=60 Score=40.12 Aligned_cols=220 Identities=12% Similarity=0.043 Sum_probs=114.1
Q ss_pred hhHHHHHhHhhccccC--c-chhHHHHHHHHHHhhc-ccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc
Q 000196 87 LGALRAIDELIDVALG--E-NASKVSKFSNYMRTVF-EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 87 ~~~i~ai~~li~~~~~--~-~~~~~~~~~~~L~~~l-~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1874)
..|+-+++.++-...- . .......+.......+ .+..+-.+...+-+++..=--..+..+.+.++..+. ++.-+.
T Consensus 64 ~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~-~l~~i~ 142 (372)
T PF12231_consen 64 IQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLA-ALHNIK 142 (372)
T ss_pred HHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHH-HHHHhh
Confidence 4466666666533200 0 1112222344433343 223344566666666543111122233444443333 222232
Q ss_pred C-CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh----------
Q 000196 163 G-DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR---------- 231 (1874)
Q Consensus 163 ~-~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~---------- 231 (1874)
+ =+.-+.=..++.+++.+....|..|..+...-+|.++..+-+....+|..|...+-.+...+. .+..
T Consensus 143 ~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~-~~~~~s~~~~~~~~ 221 (372)
T PF12231_consen 143 NRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG-PNKELSKSVLEDLQ 221 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHhc
Confidence 2 222344466788899999999999999999999999999999999999987655544432222 1100
Q ss_pred ---hHHHHHHHHHHHHHhhccCCCChhHHHHHHH--HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhH
Q 000196 232 ---WRVQWYYRMFEATQDGLGRNAPVHSIHGSLL--AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLP 306 (1874)
Q Consensus 232 ---~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~--~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~ 306 (1874)
....+...+.+.+..-+.+++. ..++--. ++-.|++...-.-.+++.+.+...-.++++.++.+|.++..++.
T Consensus 222 ~~~~~~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 222 RSLENGKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWR 299 (372)
T ss_pred cccccccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0001122222223332333111 1111111 12222221111223466666666667788999999999999999
Q ss_pred hHhh
Q 000196 307 RIAH 310 (1874)
Q Consensus 307 ~la~ 310 (1874)
.+..
T Consensus 300 ~liy 303 (372)
T PF12231_consen 300 RLIY 303 (372)
T ss_pred HHHH
Confidence 8875
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=89.76 E-value=4 Score=54.11 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhcCC----ChhhhhhHHHHHhHhhccccCcc----hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHH
Q 000196 68 DQLYDRISGLLESN----DAAENLGALRAIDELIDVALGEN----ASKVSKFSNYMRTVFEV---KRDREILVLASKVLG 136 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~----~~~~r~~~i~ai~~li~~~~~~~----~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg 136 (1874)
.++.+.++++++++ +..-+.++++++.+++.....+. ...+..+.+|+...+.. ..|.+.+...-++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34566677787763 44567889999999986421221 12234566666665542 346677788888998
Q ss_pred HHhhhCCCcchHHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 137 HLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 137 ~l~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
.+... .. ++....++. .......|.+|+.+|+-++..+|....+.+-+|+- =.+.+++||-+|
T Consensus 472 N~g~~---~~-------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-----n~~e~~EvRiaA 536 (574)
T smart00638 472 NAGHP---SS-------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-----NRAEPPEVRMAA 536 (574)
T ss_pred ccCCh---hH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-----CCCCChHHHHHH
Confidence 76543 11 223333333 23345789999999999999999865544443331 124468899999
Q ss_pred HHHHH
Q 000196 215 VEALR 219 (1874)
Q Consensus 215 ~~al~ 219 (1874)
..+|=
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 88764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=89.74 E-value=13 Score=42.62 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000196 1611 GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1874)
Q Consensus 1611 ~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~ 1690 (1874)
..+...+..+..+...|+ ..+|+..+++++..... .....+.++.+|....+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~la~~~~~~----- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGD---YTEAIKYFEALESRYPF-------------------SPYAEQAQLDLAYAYYKS----- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------chhHHHHHHHHHHHHHhc-----
Confidence 357788888888888885 68899999987754321 122344566666666543
Q ss_pred CCCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1691 DESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|+++++.+|+... +|+..|..+++.+... .........|++.|-+.+...
T Consensus 84 -~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 84 -GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV------DRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred -CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc------cCCHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999997665 6777777766542110 111234567777777777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=89.60 E-value=21 Score=43.81 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC----CCcchhHHHHHHHHHHHHhhcC-c-cc--hhchHHHHH
Q 000196 126 EILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG----DRVEYRRFAAVLILKEMAENAS-T-VF--NVHVAEFVD 197 (1874)
Q Consensus 126 ~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~----~~~~~~r~aA~~~l~~la~~~p-~-~~--~~~l~~il~ 197 (1874)
.+...+++.+.+.+..-+.....|++..+..+.+.|.. .+....=..|+.+|..+++... . .| .+++.+|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 34445555555555543222334555555555555532 2222222447778887776532 1 33 478888887
Q ss_pred HH-HHhh--c---------CCchhH------------HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC
Q 000196 198 AI-WVAL--R---------DPTLAV------------RERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1874)
Q Consensus 198 ~i-~~~l--~---------D~~~~V------------R~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~ 253 (1874)
.| +..| + ||.+-| |.||++-++.+.+.-.+.-...-..+...++.+-... ...+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~ 268 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNN 268 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--Cccc
Confidence 64 4444 2 444444 5678887776654321100111122333333322221 1235
Q ss_pred hhHHHHHHHHHHHHHHcc-----h--h-----hhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 254 VHSIHGSLLAVGELLRNT-----G--E-----FMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 254 ~~~~~~al~~l~~ll~~~-----~--~-----~~~~~~~~i-~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
|..+.||+.+++++.... | + -+.+.|... .+.+- --....|.+|..++..+.......+. ..
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~ 343 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQ 343 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HH
Confidence 899999999999997732 1 0 122333322 12221 11245677888888777766654433 46
Q ss_pred HHHHHHHHHHhhcCCC
Q 000196 321 LKICMNHILTVLRIPA 336 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~ 336 (1874)
+..++|.+...|.++.
T Consensus 344 l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 344 LLQIFPLLVNHLQSSS 359 (370)
T ss_dssp HHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7889999999998765
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.1 Score=41.79 Aligned_cols=81 Identities=12% Similarity=0.253 Sum_probs=55.8
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1874)
.|+|++|+..|++.+...+...+ ......+-.|+..+|+|+.-....+.. ..++. .....-+.+.+.+.+|+|+.-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-SAYLYNLAQCYFQQGKYEEAIELLQKL--KLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-HHHHHHHHHHHHHTTHHHHHHHHHHCH--THHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh-HHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 47899999999998876553211 345566889999999999888877651 11111 124445779999999999987
Q ss_pred HHHHh
Q 000196 1447 AEYVS 1451 (1874)
Q Consensus 1447 ~~~~~ 1451 (1874)
.+.+.
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=89.29 E-value=5.2 Score=48.56 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=91.1
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1874)
+.+.+...|..++++|..+....+.+ |-++.++..... +.+..+-...++.+..|..+.--.+.||+..++...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~gl~~Ll--Pyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vl 264 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDPGLQQLL--PYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVL 264 (343)
T ss_pred HhCCCHHHHHHHHHHhccCCCchhhh--hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHH
Confidence 34577889999999997543332211 223333332211 1145555667777777777665567799999888877
Q ss_pred HHHhh--------CCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 647 TYLEQ--------SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 647 ~~l~~--------~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
+.+.. ..+.+..|+.|+.+++.+++.++....-.-+.|+..+.+.+.++.. .....-+++.+++.+
T Consensus 265 tclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~---~~~~~YGAi~GL~~l 338 (343)
T cd08050 265 TCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK---PLTTHYGAIVGLSAL 338 (343)
T ss_pred HHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC---CcchhhHHHHHHHHh
Confidence 76521 1134678999999999999988776655566788888888887631 222345666666554
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=89.28 E-value=25 Score=39.57 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=101.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++....+. .+......+.++..+|+ ..+|++.++..+....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~ 130 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGK---YEQAMQQFEQAIEDPL 130 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhccc
Confidence 4678888999999999999999999988876542 34566777888888884 6889998888764211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
.. . .......++.++...| ..++....|.++.+.+|+...+|..+|......
T Consensus 131 ~~-~------------~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 182 (234)
T TIGR02521 131 YP-Q------------PARSLENAGLCALKAG-------------DFDKAEKYLTRALQIDPQRPESLLELAELYYLR-- 182 (234)
T ss_pred cc-c------------chHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--
Confidence 00 0 0000112344443333 457788999999999999888998888775541
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ 1786 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~ 1786 (1874)
+ -...|+..|-+++... ........-+..+....|+..+..
T Consensus 183 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 183 -----G-------QYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred -----C-------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1 1234555565555542 122333334445556666654433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.19 E-value=4 Score=50.44 Aligned_cols=211 Identities=17% Similarity=0.148 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000196 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1874)
Q Consensus 1528 ~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1874)
.+..+++-+.|++|=+ .++-|..-+..+. ..+..+.|+-.+...-.+|+.+.|..+...+++++|..-.
T Consensus 116 ae~ysn~aN~~kerg~--------~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-- 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQ--------LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-- 185 (966)
T ss_pred HHHHHHHHHHHHHhch--------HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh--
Confidence 3455667888988743 2222322222222 3355899999999999999999999999999998774210
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC
Q 000196 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP 1686 (1874)
Q Consensus 1607 ~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~ 1686 (1874)
+.---..++=++|. -.||-....+-+.. . ...|-++.-+|--...
T Consensus 186 --------a~s~lgnLlka~Gr---l~ea~~cYlkAi~~---q-------------------p~fAiawsnLg~~f~~-- 230 (966)
T KOG4626|consen 186 --------ARSDLGNLLKAEGR---LEEAKACYLKAIET---Q-------------------PCFAIAWSNLGCVFNA-- 230 (966)
T ss_pred --------hhcchhHHHHhhcc---cchhHHHHHHHHhh---C-------------------CceeeeehhcchHHhh--
Confidence 00011123333442 23444333332211 0 0112222222222211
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh------hhc----cCCC----------CchhhHHHHHH
Q 000196 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH------YTL----RGLP----------SVAPQFVVHAV 1746 (1874)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~------~~~----~~~~----------~~~~~~~~~ai 1746 (1874)
...+...+++|++|++++|+.-.|++.++.+..+.... |.+ +... +...-.+-.||
T Consensus 231 ----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 231 ----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred ----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 23567789999999999999999999998887654321 110 0000 01122466889
Q ss_pred HHHHHHHhhccccCCCcchHHh-HHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1747 TGYFHSIACAAHAKGVDDSLQD-ILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1747 ~~f~~si~~~~~~~~~~~~~q~-~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.+|-|+|.+++ .|.+ -.-|-.-+-+-|+..|-.+.-++++.
T Consensus 307 ~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 307 DTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999998853 1222 23333333444554444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.06 E-value=96 Score=41.53 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-----HHHHHHHHhccC
Q 000196 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-----VVLPQIIARIHS 1814 (1874)
Q Consensus 1744 ~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-----~~ipQLiari~~ 1814 (1874)
.||+.|=++++- ...++..+-+.+|--.|++-|...+..+.......-.|....+ .|+-|+..-+-.
T Consensus 698 ~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 698 LAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 677777777653 2345678889999999999998777666666666666655543 577787777743
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.4 Score=51.84 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH-HHHHHHhhcccC--CChHHHHHHHHHHHHHhhhCCCcc
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK-FSNYMRTVFEVK--RDREILVLASKVLGHLARAGGAMT 146 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~-~~~~L~~~l~~~--~d~~v~~~aa~~lg~l~~~~g~~~ 146 (1874)
|+..+.+|++|+-.+-|--=+.--..++.++.......++. -..|...++.++ -+.+-+..||=+|.-++..-..-+
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 45667788888777666422222223333331111111111 122444444331 135788888888888877411112
Q ss_pred hHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 147 ADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 147 ~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
...++ .++..|++.|.++..+-.|+=.+.+|+.|-++-+. ....-=..-.+.+...|+||-|+||-||.-||+.++..
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 22233 36778888886654567788888888888877443 23333334567788899999999999999999999876
Q ss_pred Hh
Q 000196 225 IE 226 (1874)
Q Consensus 225 i~ 226 (1874)
..
T Consensus 673 ~~ 674 (1387)
T KOG1517|consen 673 GS 674 (1387)
T ss_pred cc
Confidence 54
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=88.57 E-value=27 Score=41.38 Aligned_cols=229 Identities=10% Similarity=0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc-cc--cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Q 000196 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELID-VA--LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLA 139 (1874)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~-~~--~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~ 139 (1874)
+++|.+++.+.+..+=+.++|.+-.+.+.=+...+. .. ...-+.+ ..+..-|..|+.|.--..|=..|-++.+.+-
T Consensus 5 ~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF 83 (307)
T PF04118_consen 5 YKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIF 83 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 344444444443333334455544444444444433 11 0111111 2244455555554333456667777777665
Q ss_pred hhCCC-cchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHH
Q 000196 140 RAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEAL 218 (1874)
Q Consensus 140 ~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al 218 (1874)
+.-|. ...+-+.-....+++.++ ...-..|-.-+-++...-...+..+.|.+..++-.++.||-|...++-+.+...+
T Consensus 84 ~~ig~~~L~~dl~i~~~GLfpl~~-~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll 162 (307)
T PF04118_consen 84 ERIGPDGLAQDLPIYSPGLFPLFS-YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLL 162 (307)
T ss_pred HhcCHHHHHhhcHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHH
Confidence 54221 112222223344444442 1222344444445544444566688999999999999999999988888888877
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch------------hhhHHHHHHHHHHH
Q 000196 219 RACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG------------EFMMSRYREVAEIV 286 (1874)
Q Consensus 219 ~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~------------~~~~~~~~~i~~~l 286 (1874)
..+...+.. ..+++.+.-.+.. + .+.|.+|+..+..-+.... ..+.+.-+=++..+
T Consensus 163 ~~l~~~v~~------~~F~~~lwl~ii~---s---p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al 230 (307)
T PF04118_consen 163 DKLKEAVGD------KYFWQCLWLCIIT---S---PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRAL 230 (307)
T ss_pred HHHHHhcCh------hHHHHHHHHHHhc---C---cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHH
Confidence 666554431 2455555555443 2 3668887776543322111 01122222244555
Q ss_pred HHHhhcchhHHHHHHHHHh
Q 000196 287 LRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 287 l~~~~~~~~~vr~~~~~~i 305 (1874)
...+++.+..|++..++++
T Consensus 231 ~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 231 CACLEDENILVQRGFLDLL 249 (307)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 5566666666666655544
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.2e+02 Score=41.88 Aligned_cols=358 Identities=13% Similarity=0.029 Sum_probs=188.0
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h---hhhhhcHHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-E---LDVQLKESWY 1364 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~---~~~~~~~~~~ 1364 (1874)
..++.+..+-+.+..|+-+++..+... +......-.|..++...|+++.+.-.++.... . .........+
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l 126 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVY 126 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467778888889999998888766432 33355667888999999999999988875432 1 1122234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhH--HHHHHHHHHHcC-
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEM--APMAANAAWNMG- 1441 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~--~~~~a~aaw~l~- 1441 (1874)
...|+.++|+..|++.+...++. .+....+..++...|+.+.-....+..-. .|+....+ .+.....-+.+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQT---QQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999998765543 34555677788888887754444333211 22211111 111111111100
Q ss_pred ------ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHH-HHHhHhhhhHH
Q 000196 1442 ------EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--VLESYERAYSN-MVRVQQLSELE 1512 (1874)
Q Consensus 1442 ------~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~-l~~lq~L~Ele 1512 (1874)
++...++. ...++.++...... ....|.+++-. +..+-...+.+
T Consensus 202 ~~~~~~r~~~ad~A---------------------------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 202 TRSEKERYAIADRA---------------------------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred ccChhHHHHHHHHH---------------------------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 00000000 00111111110000 11123333211 11111112333
Q ss_pred HHHH-hhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh-cCCcc---cHHHHHHHHHHHHhcCChhH
Q 000196 1513 EVID-YCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTE---DVETWLKFASLCRKSGRISQ 1587 (1874)
Q Consensus 1513 Eii~-~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e---~~~~wlk~a~laRk~g~~~~ 1587 (1874)
+++. |......++..+. -...|--.+.....+++.=...+. .++ .+|.. ....+.+++....+.|+++.
T Consensus 255 eA~~~~~~ll~~~~~~P~----~a~~~la~~yl~~g~~e~A~~~l~--~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPP----WAQRWVASAYLKLHQPEKAQSILT--ELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HHHHHHHHhhccCCCCCH----HHHHHHHHHHHhcCCcHHHHHHHH--HHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 3332 1111111000011 112232222222333333333222 221 22222 14567777777899999999
Q ss_pred HHHHHHHHhcCCCCCCc-cccc---CC-CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 000196 1588 ARSTLVKLLQYDPETSH-ENVR---YH-GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTT 1662 (1874)
Q Consensus 1588 a~~~L~~l~~~~~~~~~-~~~~---~~-~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~ 1662 (1874)
|...+.++....|.... .... +. ....+.+-.+.++-..|+ ..+|+..+++.+.....
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~---~~eA~~~l~~al~~~P~-------------- 391 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND---LPQAEMRARELAYNAPG-------------- 391 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC--------------
Confidence 99999988766542100 0000 00 112355667778878885 68999999987654211
Q ss_pred ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1663 ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1663 ~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
+ ...+..+|.-.... ..+++.++.|++|.+++|+....++..|..
T Consensus 392 ----n----~~l~~~lA~l~~~~------g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 392 ----N----QGLRIDYASVLQAR------GWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred ----C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 1 22344455544332 347889999999999999999988888874
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=88.54 E-value=4.4 Score=42.97 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred cchhchHHHHHHHHHhhc-CC-----------------chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 187 VFNVHVAEFVDAIWVALR-DP-----------------TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l~-D~-----------------~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
++.|+++.++|.++.... ++ --.+|.+|.+++-.+++....+- ....+++.+..|+
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence 467899999999997654 33 24789999999999887433221 2566788999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHH
Q 000196 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVL 287 (1874)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll 287 (1874)
+|. .+++.-+..++.-++...++.+.++++.+++.+-
T Consensus 76 ~D~--~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 76 KDE--HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp SS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 983 6888888889988888888777777776665443
|
; PDB: 4A0C_A 1U6G_C. |
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=88.48 E-value=15 Score=45.00 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=73.6
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCc-----
Q 000196 114 YMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENAST----- 186 (1874)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~r~aA~~~l~~la~~~p~----- 186 (1874)
|+++=+++++-...+++|+..+-.|++..+......+...+...+.-.. ...+|..+.+|+.+++.++....+
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 6666665432346677777777788775222222222223333332211 346788999999999999865321
Q ss_pred -cch--hchHHHHHH-HHHhhc---CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCC
Q 000196 187 -VFN--VHVAEFVDA-IWVALR---DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1874)
Q Consensus 187 -~~~--~~l~~il~~-i~~~l~---D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~ 252 (1874)
... ..+.+++.. |..-|. +.+|.+|-.|++.+..+-.. ...+.+..+++.+...|.+++
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-------l~~~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-------LPKEQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-------S-HHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCC
Confidence 111 134454433 445555 56788988888876655332 234567789999999998875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.43 E-value=9.6 Score=47.12 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=88.3
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCC---CChhHHHHHHHHHHHHHHhcccchhhcHHhH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN---ANNGIISGVLVTVGDLARVGGFGMRQYISEL 730 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~---~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l 730 (1874)
.+...|.+|+..| ....+ +..+++.++.++.+....+ .+-.....++..+-.|..+-.-.+.||+.++
T Consensus 219 ~~~~~r~eAL~sL---~TDsG------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L 289 (576)
T KOG2549|consen 219 SDEPLRQEALQSL---ETDSG------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQL 289 (576)
T ss_pred CCHHHHHHHHHhh---ccCcc------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 4566677766544 22222 3334444444444432110 1112222333333333333334789999999
Q ss_pred HHHHHHHHhc---------CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 000196 731 MPLIVEALLD---------GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGI 800 (1874)
Q Consensus 731 lp~l~~~l~d---------~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr~~al~~lg~ 800 (1874)
+|.++.++-. .+.+..|+-|...++.++...+...+ ...|.+...+.+.+.+. .+.....-++..|..
T Consensus 290 ~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 290 VPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred hhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999998731 23577999999999999999886532 23578899999988655 578899999999988
Q ss_pred hcc
Q 000196 801 MGA 803 (1874)
Q Consensus 801 lga 803 (1874)
+|.
T Consensus 368 lg~ 370 (576)
T KOG2549|consen 368 LGH 370 (576)
T ss_pred hhh
Confidence 884
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.06 E-value=27 Score=43.33 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.++|...+..++..+. .++-+.|.-.+++|..+..+....=..-.+.++..+..-+-|..+.||..|..+|..+-+..
T Consensus 86 ~~~V~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~- 163 (885)
T COG5218 86 EELVAGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME- 163 (885)
T ss_pred hHHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-
Confidence 5677777777766653 34446788889999988888766545556777888888889999999999999887664332
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
....+.... ++-.+.+ .+| +.++|.+|++-+
T Consensus 164 ---~neen~~~n-~l~~~vq--nDP-S~EVRr~allni 194 (885)
T COG5218 164 ---LNEENRIVN-LLKDIVQ--NDP-SDEVRRLALLNI 194 (885)
T ss_pred ---CChHHHHHH-HHHHHHh--cCc-HHHHHHHHHHHe
Confidence 222222222 2222221 133 357788877653
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.80 E-value=79 Score=40.47 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhccc
Q 000196 44 SLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEV 121 (1874)
Q Consensus 44 a~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~ 121 (1874)
...|-.++.+..+-...-.=...+..+.+.+..++++ ++...=.+++..+++++.. |. +...+..+...|-.+..
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y--~~iP~~sl~~~i~vLCsi~~- 227 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY--GDIPSESLSPCIEVLCSIVN- 227 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--CcCChHHHHHHHHHHhhHhc-
Confidence 3445556655554433211124455566666666644 4444557899999999876 44 45667788888888874
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-----CcchhHHHHHHHHHHHHhhcCccchh--chH-
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-----RVEYRRFAAVLILKEMAENASTVFNV--HVA- 193 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-----~~~~~r~aA~~~l~~la~~~p~~~~~--~l~- 193 (1874)
. .+..+.+-+++..|+.+.. . ..-+..+.+.|.++ ++.+.-.+|+.+++.+.-+.+..-.| .+.
T Consensus 228 ~--~~l~~~~w~~m~nL~~S~~--g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 228 S--VSLCKPSWRTMRNLLKSHL--G----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred c--cccchhHHHHHHHHHcCcc--H----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 3 3777778888888887521 1 12245555566321 22233368999999988776432222 233
Q ss_pred -HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 194 -EFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 194 -~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
.+++.+..+++-+++.| +.+.+..+...+
T Consensus 300 ~~vl~sl~~al~~~~~~v---~~eIl~~i~~ll 329 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRV---DYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHhCCCCee---hHHHHHHHHHHH
Confidence 48899999999888888 444444444444
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=87.70 E-value=0.79 Score=36.19 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=32.0
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHH
Q 000196 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1874)
Q Consensus 176 ~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~a 217 (1874)
+|..+.+.-|+.+.. +.+...|...+.|+++.||+||.+.
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677777776643 3788888899999999999999875
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.62 E-value=1e+02 Score=39.99 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=160.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh--Cccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIR 678 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~ 678 (1874)
+.-+.-.+.++.--.|..|++.+.++....+.. ..+-+......+.++++ +...+.+|+-++..++.+ ..+.+.
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNN--HLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhchhhhHHHH
Confidence 455555677887778889999999987666542 12233333334444443 556778888899888865 456778
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHH----Hh---cCc------chh
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA----LL---DGA------AVT 745 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~----l~---d~~------~~~ 745 (1874)
.+++++|+-++..-++- +.++. -.++..+.+..++++.||-++++..+.+. .+ +.+ ..+
T Consensus 538 ahVp~tmekLLsLSn~f-----eiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDD 609 (970)
T COG5656 538 AHVPETMEKLLSLSNTF-----EIDPL---SMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDD 609 (970)
T ss_pred hhhhHHHHHHHHhcccc-----cchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccH
Confidence 88999999888865542 22233 23455666777788888888887777662 22 111 112
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCC
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK--------MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~--------~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
+..+|.+-|..+..- +-.....|.++..+.. +|+++. ..+-.+++..+..+. |..+.
T Consensus 610 KqmaasGiL~T~~sm----iLSlen~p~vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~t----f~ske------ 674 (970)
T COG5656 610 KQMAASGILRTIESM----ILSLENRPLVLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGYT----FMSKE------ 674 (970)
T ss_pred HHHHHHHHHHHHHHH----HHhcccchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhhh----HHHHH------
Confidence 333343333322211 1112223444444433 333332 233344443332111 00000
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC--CC
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VP 895 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~--~~ 895 (1874)
+. | ...-+...|..+++++....+.+.+..++.+++..=+..+ .+
T Consensus 675 ------------------I~----------p-----imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~ 721 (970)
T COG5656 675 ------------------IE----------P-----IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG 721 (970)
T ss_pred ------------------hh----------h-----hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence 00 0 0134566777888777533556677788888876655554 36
Q ss_pred CccchhHHHHHHHhcCCcc---hhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhc
Q 000196 896 YLPKVLPDLFHTVRTCDDY---LKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWS 950 (1874)
Q Consensus 896 ~l~~ilp~ll~~l~~~~~~---~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~ 950 (1874)
...+++-.+....-.+... -+...++.+-.++-.++. ....|+|-..+++.....
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhh
Confidence 7777777777655444332 233445555555555554 445688866666654433
|
|
| >PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.30 E-value=1 Score=42.26 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
.+||+|++.|+++....|..+-++++.++..+-...+|| ..|+..+-++|+.+-+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-QPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999988888884 5688888888887644
|
This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.1e+02 Score=40.20 Aligned_cols=193 Identities=12% Similarity=0.013 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---C---CcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---G---EDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~---g---~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
.+..|...+.++...+|+ .+......+.+.+.. | ...+..+|+..+++.+.- . +
T Consensus 276 ~~~~A~~~~~~Al~ldP~----------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-d--P------- 335 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN----------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-D--H------- 335 (553)
T ss_pred HHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-C--C-------
Confidence 456788888888877663 122222222222211 1 111346788877765532 1 0
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1874)
..+.++..+|.-.... ...++....|++|++++|+...+|+..|..+... +
T Consensus 336 ------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-------G---- 386 (553)
T PRK12370 336 ------------NNPQALGLLGLINTIH------SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA-------G---- 386 (553)
T ss_pred ------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-------C----
Confidence 1233445555544332 3467899999999999999999999888765431 1
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-hh-HHHHHHHHHHhccCC
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI-NT-WLVVLPQIIARIHSN 1815 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~-~~-wl~~ipQLiari~~~ 1815 (1874)
....|+..|-+++.+.+ .+..-... ++.+.+..|..++....+++.+...|+ .. ....+-.+..+.+..
T Consensus 387 ---~~~eAi~~~~~Al~l~P-----~~~~~~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 387 ---QLEEALQTINECLKLDP-----TRAAAGIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred ---CHHHHHHHHHHHHhcCC-----CChhhHHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 23467888888888753 22211112 233455566666666666665544332 11 122333334444443
Q ss_pred ChhHHHHHHHHHHHHHhhCchhhH
Q 000196 1816 NRAVRELIQSLLVRIGQSHPQALM 1839 (1874)
Q Consensus 1816 ~~~v~~~l~~ll~~i~~~hPqa~l 1839 (1874)
++. .. .+.++....|....
T Consensus 458 ~eA-~~----~~~~~~~~~~~~~~ 476 (553)
T PRK12370 458 ELA-RK----LTKEISTQEITGLI 476 (553)
T ss_pred HHH-HH----HHHHhhhccchhHH
Confidence 321 11 23445556666443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.6 Score=41.27 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1874)
.+..+|+.++|...|++.+....+...-.+..+++=.+|..||+.+.-....++.... .+.+....+..+.+.+.+.+|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4789999999999999998754443333456788999999999997665555432111 122334556677788999999
Q ss_pred ChhhHHH
Q 000196 1442 EWDQMAE 1448 (1874)
Q Consensus 1442 ~Wd~~~~ 1448 (1874)
+++.--+
T Consensus 90 r~~eAl~ 96 (120)
T PF12688_consen 90 RPKEALE 96 (120)
T ss_pred CHHHHHH
Confidence 9887443
|
|
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.43 E-value=45 Score=43.13 Aligned_cols=184 Identities=15% Similarity=0.206 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHH
Q 000196 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTL 1015 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l 1015 (1874)
.|.+.+++.|...+.... +. +. ...+++=...|..-++.+. ....++|.|...+++.+ ......++..+
T Consensus 345 ~~~~~~~p~l~pi~~~~~-~~---~~-~l~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~----~~iQ~~~L~~l 413 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASD-PK---QA-LLFILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSD----VQIQELALQIL 413 (700)
T ss_pred hhhhhhhHHHHHHhccCC-cc---cc-hhhHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcc----hhhHHHHHHhh
Confidence 455555555555554322 11 11 1134444444444444433 34678999999997643 33334455555
Q ss_pred HHHhcchh-hhh-hhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000196 1016 EVFGGTLD-EHM-HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALC 1093 (1874)
Q Consensus 1016 ~~~g~~~~-~~~-~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~ 1093 (1874)
..+.+.++ ..+ +.|+|.|..++-......++..++-|++.+++..+-. -+...+.++.+..+..++++.-..+.+.-
T Consensus 414 ptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~-~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 414 PTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA-AVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred hHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 55555554 222 4578888888665668899999999999999765522 23345667778888888888766666655
Q ss_pred HHHHHh--cccccc--chhhHHHHHHhCCCCchhHHHHHHHH
Q 000196 1094 CLAHAL--GEDFTI--FIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1874)
Q Consensus 1094 ~l~~~~--g~~f~~--~ip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1874)
.++... |.++.. -+|.+.........+-++|..++..+
T Consensus 493 ~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 493 ALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI 534 (700)
T ss_pred HHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence 555442 235543 36888888888778888888776544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.7e+02 Score=41.43 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhh
Q 000196 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQL 1359 (1874)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~ 1359 (1874)
..+..|..++.+++.+..|+..++.-.... . ..+..++..|+..|.+.|+.|.+..++...... .+ ...
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G----l-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAG----L-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445566666777777777776665433211 0 122456677777888888877777777654321 01 111
Q ss_pred cHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC---CCChHHHHhHHHHHHHH
Q 000196 1360 KESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT---PAEPAARLEMAPMAANA 1436 (1874)
Q Consensus 1360 ~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~---~~~~~~~~~~~~~~a~a 1436 (1874)
....|-+.|++++|++.|+......-.|+ ......+++++.+.|+++...+...++-. ...++. ........+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~--vTynaLI~a 588 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPD--RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGALMKA 588 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHH
Confidence 12236777788888877776554433343 23456677777777777766665554421 112221 112233445
Q ss_pred HHHcCChhhHHHHHhhcC
Q 000196 1437 AWNMGEWDQMAEYVSRLD 1454 (1874)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~ 1454 (1874)
.-+.|+++...++...+.
T Consensus 589 y~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666777777766666553
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.33 E-value=8 Score=48.93 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
++.+++..++..... .+..|+-.++.-|..+....++--...++.+...+...+.|. .+.+|..|+.+|+.+..
T Consensus 82 lV~~~f~hlLRg~Es-----kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTES-----KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHHHhcccC-----cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhc
Confidence 455666666666554 366787776666666555434433445667777777778886 57899999999998765
Q ss_pred hccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+. + --++...+..+++++++++||++++.++..
T Consensus 156 d~~d---e---e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 156 DPKD---E---ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CCCC---C---cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 4332 2 225788888888899999999999887643
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.2e+02 Score=39.43 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=40.9
Q ss_pred CccchhHHHHH--HHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhc
Q 000196 896 YLPKVLPDLFH--TVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950 (1874)
Q Consensus 896 ~l~~ilp~ll~--~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~ 950 (1874)
+++-++..++. .+++.+..+|..+-..+..++..++..+.||+++|+..|.+.++
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444443 24555666777777778889999999999999999999998883
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=7.6 Score=51.67 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhCCC---CCChHHHHHHHHH-HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCC
Q 000196 1247 KHLVQSLEMAFSSP---NIPPEILATLLNL-AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDA 1322 (1874)
Q Consensus 1247 ~~l~~~l~~~l~~~---~~p~~i~~~ll~l-~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~ 1322 (1874)
.++.+..++++... ..|.+-+-.++.+ -.||...+- +.+|+++..++|.|.-|+..+|....-. +
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~La~i~~~~g~~~ea~~~l~~~~~~~------P 117 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELF-----QVLVARALEAAHRSDEGLAVWRGIHQRF------P 117 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhC------C
Confidence 35555666666643 2444422223322 234433222 4689999999999999999999876532 3
Q ss_pred CcHHHHHHHHHHHhhcCChHHHhHHHHHHhc----hhh-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhH
Q 000196 1323 NPVAVVEALIHINNQLHQHEAAVGILTYAQK----ELD-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGR 1397 (1874)
Q Consensus 1323 ~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~----~~~-~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~ 1397 (1874)
......-.+..+-.+++..|.+....+..-. +.+ ....+....++|++++|.++|++.+...++. .+...++
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~ 194 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGW 194 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHH
Confidence 3445566788899999999999887764321 111 2234556799999999999999998743332 4567899
Q ss_pred hHHHHHhhCHHHHHHHH
Q 000196 1398 MRCLAALARWEELNNLC 1414 (1874)
Q Consensus 1398 m~cl~~Lg~w~~l~~~~ 1414 (1874)
=.+|..+|+-+.-....
T Consensus 195 a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 195 AQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999999976554333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=85.84 E-value=13 Score=44.01 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1566 ~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
..+...|..++.+..+.|+...|...+.+++..+|. ++.+....+-.+...| +..++...++.+...
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----------DPDARNALAWLLIDMG---DYDEAREALKRLLKA 209 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHH
Confidence 356889999999999999999999999999988763 3666666666666667 456666666665544
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
...++ .--..+|.++..+|+ .++.+..|.++.+.+|+....+.++|.+..
T Consensus 210 ~~~~~---------------~~~~~la~~~~~lg~-------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 210 APDDP---------------DLWDALAAAYLQLGR-------------YEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -HTSC---------------CHCHHHHHHHHHHT--------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred CcCHH---------------HHHHHHHHHhccccc-------------cccccccccccccccccccccccccccccc
Confidence 32211 112346888877766 367889999999999999998888886643
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=85.70 E-value=25 Score=43.99 Aligned_cols=204 Identities=14% Similarity=0.180 Sum_probs=117.4
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--- 674 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--- 674 (1874)
..++..|+..++.+++.-|.....++.++-...+.. .+.+|+.+...+...-+......--.+.++.+|.++....
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 467888889999999999999999999987766543 4667776666655444431233334567888888886432
Q ss_pred ------------------cccccchHHHHHHHHHHhhccCC-------------CCCChhHHHHHHHHHHHHHHhcc-cc
Q 000196 675 ------------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FG 722 (1874)
Q Consensus 675 ------------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~ 722 (1874)
+.+..|.+++...+...+..+.. +..++.-....+.-++++....+ +.
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 22234555666555555543200 00011111122334445555444 46
Q ss_pred hhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH--HHHhhccccccccccchHHHHHHHHHhc----CCCCHHHHHHHHH
Q 000196 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLK 796 (1874)
Q Consensus 723 ~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~l~----~~~~~~vr~~al~ 796 (1874)
+.+....++..+..++... +..+-+.|+..+. .++.. +..+ ...+++.+...|. +.=+..+|..+..
T Consensus 291 f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~l----i~~~--~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSL----ISQN--SRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHH----HHCT--HHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHH----HHhC--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777888888888888754 4556555544332 11111 1111 1345666666553 2226689999999
Q ss_pred HHHHhcccCccch
Q 000196 797 VLGIMGALDPHAH 809 (1874)
Q Consensus 797 ~lg~lgaldp~~~ 809 (1874)
++..+.-+||-.+
T Consensus 364 vl~~l~~~d~~lf 376 (409)
T PF01603_consen 364 VLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHTTSHHHH
T ss_pred HHHHHHHhCHHHH
Confidence 9999988888754
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.51 E-value=23 Score=43.00 Aligned_cols=86 Identities=23% Similarity=0.179 Sum_probs=63.7
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhh-----hhcHHHHH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDV-----QLKESWYE 1365 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~-----~~~~~~~E 1365 (1874)
||++=.--++.+-||+|......= .++++..+..|-+.|.+|+.++.|.|..+.+-.-.+. -..+..||
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566666667777899998655421 2566788999999999999999999998865432222 12344699
Q ss_pred HhcCHHHHHHHHHHHHh
Q 000196 1366 KLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~ 1382 (1874)
++++.++|-.+|++-++
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=85.46 E-value=74 Score=36.43 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=104.5
Q ss_pred HHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHH
Q 000196 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1874)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1874)
...+..++++....++.|..++.+.- ...|. +.+.+..+... +..+.+..+.+++..+.+..+..+ |++.+++
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L 80 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN-VCVPP----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-PFLQPLL 80 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc-cchhH----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH-HHHHHHH
Confidence 35567789999999999999998873 33333 33444444444 334444567778888877766544 6666665
Q ss_pred HHHHHHhhccCC-CCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 686 KALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 686 ~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
..+.-....... .+.......+...++..++...++ +-.++++.+...|.+.++...+..|+.++..+++.. +
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~--v 154 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE--V 154 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--h
Confidence 554333222111 112333334444566677766555 667788888888833335668888999999998543 3
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
++.+ .....+..-+..+..+.+-......++
T Consensus 155 vd~~----s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 155 VDFY----SAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred ccHH----HHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 3433 345555555544444444444334433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=85.44 E-value=9.4 Score=46.94 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+..+++. ...++++.|...+.++.+.+ |.+..-.||++-..++ ..+|++.+++.+++...
T Consensus 172 v~~Ll~~l---~~t~~~~~ai~lle~L~~~~-------------pev~~~LA~v~l~~~~---E~~AI~ll~~aL~~~p~ 232 (395)
T PF09295_consen 172 VDTLLKYL---SLTQRYDEAIELLEKLRERD-------------PEVAVLLARVYLLMNE---EVEAIRLLNEALKENPQ 232 (395)
T ss_pred HHHHHHHH---hhcccHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC
Confidence 45555555 44678999999999987643 4566667787776664 57999999987754211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
+ +..+...++++... +..+.+++..++|++..|...++|+.+|..+-.
T Consensus 233 ------------------d----~~LL~~Qa~fLl~k------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 233 ------------------D----SELLNLQAEFLLSK------KKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred ------------------C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 1 44455566666543 345788999999999999999999999988654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.3e+02 Score=39.04 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=108.2
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..++.+.++-.|...+.+++.-+.-. + =+.++.+|+.++++|++.+||++++.+|+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT-----------------g------nnkair~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT-----------------G------NNKAIRRLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc-----------------C------chhhHHHhhcccccccchHHHHHHHHHhe
Confidence 335566778889987776665544211 0 13466788899999999999999999986
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
= -.|. .|+.++..+..|.+. ++.||-.|.-+||-.+.-.+.. .-+.+|..+.++ ...-.|+-|+-.
T Consensus 581 F-Vl~~----dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D-~~~fVRQgAlIa 647 (929)
T KOG2062|consen 581 F-VLFR----DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSD-PVDFVRQGALIA 647 (929)
T ss_pred e-eEec----ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcC-hHHHHHHHHHHH
Confidence 1 1222 245566666666654 7899999999999777665421 233555556565 556778888888
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
++.+.-.+.+..-|-+..|-+.+.+.+.+.
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 888877777777788888888888888774
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.17 E-value=3.1 Score=52.05 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=77.1
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..+++++-+.||..|+..+|+.+...+..+ -...+.+++.++....-.|...+||.++++.|+
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i----------------P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~ 288 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMI----------------PPTILIDLLKKITDELAFDTSSDVRCSVFKGLP 288 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHhhhccchheehhHhcCcH
Confidence 4567889999999999999998876555432 134567777777777678888999999999885
Q ss_pred CCCCcchhhcc---HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 587 GNRGFDDFLAQ---ADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 587 ~~~~f~~~L~~---~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
. -.+.-++. ...++.+-.+++|.+..||.+++++|-++-..-
T Consensus 289 ~--~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 289 M--ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred H--HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh
Confidence 2 11111111 124666667889999999999999998876544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.12 E-value=84 Score=40.24 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHH
Q 000196 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMA 1447 (1874)
Q Consensus 1369 ~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~ 1447 (1874)
+|.+|+.+|++..+...|.. =.....-|.+.+|++|+.-....+..-. .+| +|.+--.++--..|||.+=-.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~---wvl~q~GrayFEl~~Y~~a~~~F~~~r~-~~p-~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG---WVLSQLGRAYFELIEYDQAERIFSLVRR-IEP-YRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc-ccccchhHHHHHHHHHHhhHHHH
Confidence 58999999998332222210 0112233445677777655444432210 011 12222246667999998744443
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=84.91 E-value=23 Score=46.97 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=89.7
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh--
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR-- 231 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~-- 231 (1874)
+..+.+|+.+.+-.. . .|..++..+....+.-=..++..+++.+-..-.-+++.+|..|.-+++............
T Consensus 359 ~~~i~~~i~~~~~~~-~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKITP-L-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCCCH-H-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 666777876543322 2 233344444444322223344444444333333446789999999998776544422211
Q ss_pred --hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 232 --WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 232 --~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
...++.+.+...+..+.... +.+.+...+.+||-+-. .-..+.+..++ ......+..+|.+++.++..++
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~---~~~i~~l~~~l----~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKG-DEEEIQLYLKALGNAGH---PSSIKVLEPYL----EGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcC-CchheeeHHHhhhccCC---hhHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHH
Confidence 12344555555555544443 34556777777764321 11112222221 1122346789999999999888
Q ss_pred hhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000196 310 HFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1874)
Q Consensus 310 ~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~al 345 (1874)
...+.. +.+.++.+..+. ..|.+|+..|
T Consensus 509 ~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 509 KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 765543 233344444432 2477777643
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.85 E-value=3e+02 Score=42.84 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHhhcccccc-----cchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000196 1042 PVDIRRAAIETLTRLIPRVQV-----TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1874)
Q Consensus 1042 ~~~vr~~ai~~l~~l~~~~~~-----~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1874)
...+|..++++++..+...++ .++-..|+..+...+.++.+++...+..++....
T Consensus 1246 l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1246 LVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred cccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Confidence 345688888888887766543 4567788888888888877888877777665444
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.6e+02 Score=39.61 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=65.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhHhHhhh----ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhh
Q 000196 283 AEIVLRYLEHRDRLVRLSITSLLPRIAHF----LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358 (1874)
Q Consensus 283 ~~~ll~~~~~~~~~vr~~~~~~i~~la~~----~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p 358 (1874)
.-.|+..+-+.++.|+..+..++-++|.. .+..+++.-.+-++..+...|+....-..+-..+.-+....+.+..|
T Consensus 591 ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~~~~i~ 670 (1014)
T KOG4524|consen 591 LYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSDYGTIP 670 (1014)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCCCCchh
Confidence 33455556678888988888777777742 24555544444455555555543322233444444455666667789
Q ss_pred hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC
Q 000196 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1874)
Q Consensus 359 ~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g 394 (1874)
++.++++.+...+-..+...+..-+..+-.+.+..|
T Consensus 671 ~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~ 706 (1014)
T KOG4524|consen 671 NLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMK 706 (1014)
T ss_pred hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 999999999988855544433333333333444444
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=84.41 E-value=13 Score=49.94 Aligned_cols=171 Identities=15% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc----
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE---- 229 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~---- 229 (1874)
+..+.+|+....-... .|..++..+....+.--...+..+++.+-..-..+++.+|.+|.-+++.+..-.....
T Consensus 397 v~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 5566677764332222 2334455555443222234444555444333334567899999999988776554331
Q ss_pred ------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc---hhHHHHH
Q 000196 230 ------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR---DRLVRLS 300 (1874)
Q Consensus 230 ------~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~---~~~vr~~ 300 (1874)
......+...+.+.+..+.... +.+.+..+|.+||-+-. ......+..+.... +..+|.+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1122233333444444333333 35667888888876531 12333344444433 7789999
Q ss_pred HHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000196 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1874)
Q Consensus 301 ~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~al 345 (1874)
|+.++..++...+.. +.+.++.++.+. ..|.+|+..|
T Consensus 544 Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 544 AIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 999999887665543 333444444443 2477777543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.22 E-value=87 Score=36.17 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=106.9
Q ss_pred cchhHHH---HHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHH----HH
Q 000196 166 VEYRRFA---AVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ----WY 237 (1874)
Q Consensus 166 ~~~~r~a---A~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~----~~ 237 (1874)
+++.|.- .+.+|.-+-.. -|..+ .+++.|.+-.+|..++..|.--|+..++.+++ +-+.+.... .-
T Consensus 53 NenhrekttlcVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilE---dcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILE---DCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHh---cCchhhHHHHHHHhh
Confidence 4556655 33344333332 22233 34455666689998888887777777666544 333222222 23
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHH-HHHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAE-IVLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~-~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~ 314 (1874)
..+++.+...+...+ .++..+|+.-+..+..... .|..-|+. +.+ .=++.+ -..+..+|-.|..+|-.+...++.
T Consensus 127 aeilklildcIgged-deVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 127 AEILKLILDCIGGED-DEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 467788888877764 5778888888777654211 11111110 000 000101 123567788888888888777775
Q ss_pred hHHHHHH--HHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhH--HHHHHHHHhhcCCCCC
Q 000196 315 RFVTNYL--KICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLP--TITSHLREAIAPRRGK 377 (1874)
Q Consensus 315 ~f~~~yl--~~~~~~Ll~~L~~~~~---R~~a~~alg~la~~v~~~~~p~l~--~i~~~l~~~L~~~~~~ 377 (1874)
.. +|. ..++..|..-|+-.++ +...++....++..-.. ..|++ .+++.|...+...+.+
T Consensus 205 sa--neckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 205 SA--NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred HH--hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHHHHHhhCCCCC
Confidence 32 233 3456666666654343 44555555555544322 24554 3666666666544433
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.04 E-value=1.4e+02 Score=38.30 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHhcc--cchhh----cHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 701 NNGIISGVLVTVGDLARVGG--FGMRQ----YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g--~~~~~----~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
+-.++.++++.++.+..... +++.. -+..++..+.+.|.|. ++..|..|+..+.+++.....- | ....++
T Consensus 312 s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~sk~--~-~~r~ev 387 (1128)
T COG5098 312 SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNSKT--V-GRRHEV 387 (1128)
T ss_pred chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcccc--c-chHHHH
Confidence 66678888888887765332 23444 4456677777778886 6889999999999998765321 2 123467
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 775 l~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
.......+.+ .+.-||+.|++.++.+-.-.||.
T Consensus 388 ~~lv~r~lqD-rss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 388 IRLVGRRLQD-RSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCChh
Confidence 7777777764 36799999999998776556765
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.01 E-value=34 Score=47.72 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=87.8
Q ss_pred hcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 000196 161 LRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY 238 (1874)
Q Consensus 161 l~~~~~~~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~ 238 (1874)
...+..|..|.+.+.++....-+ .+ ........|...+...+.|....||+.|+.+|.-++.--.-... .
T Consensus 1535 ~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~-------~ 1606 (1710)
T KOG1851|consen 1535 TADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV-------S 1606 (1710)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc-------h
Confidence 34677889999999998876654 33 45678889999999999999999999999998866532110000 0
Q ss_pred HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 239 RMFEATQDGLGRN-APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 239 ~i~~~~~~~l~~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
..-.....+.... .+....|||.+++|+++-..+=.+...+.+.+..+-+..+ .+..+++++-.++....
T Consensus 1607 ~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~-e~~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1607 DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR-ESAAIKQTVKKTVSEFR 1677 (1710)
T ss_pred HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC-CchHHHHHHHHHHHHHH
Confidence 1111111222221 2356789999999999875543333344444433333333 33667777777666443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=83.99 E-value=15 Score=45.18 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
.+.+-++-+.+.|++..|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- ..
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------~~~a~~~~a~~~~~~g~---~~eAl~~~~~Al~l-~P-- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------NAELYADRAQANIKLGN---FTEAVADANKAIEL-DP-- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-Cc--
Confidence 4667788999999999999999999887663 46777888888888885 68999998887642 10
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
..+.+|+.+|.-...+ ...++.+..|++|++++|+...++...+.....+
T Consensus 68 -------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 -------------------SLAKAYLRKGTACMKL------EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------CCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1234455555544443 3467889999999999999888766666554444
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=83.95 E-value=13 Score=43.81 Aligned_cols=142 Identities=14% Similarity=0.187 Sum_probs=87.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc---------chHHHHHHHHHHHHHhhC---CCChHhHHHHHHHH
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV---------LPALRRHLIQLLTYLEQS---SADNKCREESAKLL 666 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v---------~p~l~~~l~~~l~~l~~~---~~~~~~r~~a~~~L 666 (1874)
-+++.++..+.|.+.++|..++.++..+....|... ...+.+.+..++..+-.. +.+...-..+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 467888888888899999999999999988777654 233333344333322111 01122223444455
Q ss_pred HHHHHhC-ccccccc---hHHH-HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC
Q 000196 667 GCLIRNC-ERLIRPY---IAPI-HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1874)
Q Consensus 667 ~~l~~~~-~~~~~py---~~~i-l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~ 741 (1874)
-.++... .+.-.++ +..+ .+.+++.+.-... -..+.++...+..+..+....|-....|+..++|.+.+.+++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 5554432 1111122 2222 2335554443210 0147788888888999999999999999999999999988765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.80 E-value=56 Score=41.06 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000196 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1874)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~ 1630 (1874)
.=+-+|..-..|....++++.|.++--.=-..++-+.|..+|.+.++++|+ .-.+.++-|-..-.+|.
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----------NleaLmaLAVSytNeg~-- 368 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT----------NLEALMALAVSYTNEGL-- 368 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHhhhhh--
Confidence 344556666666665567888888877777788899999999999999874 24566666666666664
Q ss_pred hHHHHHHHHHHHHH
Q 000196 1631 KRKEAFARLQTLAM 1644 (1874)
Q Consensus 1631 ~~~~Al~~l~~~~~ 1644 (1874)
..+|+..|.+-+.
T Consensus 369 -q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 369 -QNQALKMLDKWIR 381 (579)
T ss_pred -HHHHHHHHHHHHH
Confidence 5789999988654
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=83.53 E-value=22 Score=42.09 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc----h-h-chHHHHHHHHHhhc--------CCchhH
Q 000196 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF----N-V-HVAEFVDAIWVALR--------DPTLAV 210 (1874)
Q Consensus 145 ~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~----~-~-~l~~il~~i~~~l~--------D~~~~V 210 (1874)
...++.+..++.++..+. +.....|.-|+.++..+.+++|... . . ...-+.+++..++. |....+
T Consensus 112 ~i~~~~~liiP~iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred hHHHhhhHHHhhHHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 345566667777776664 4466788999999999999988643 2 2 34445577888887 777888
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-HHhhccCCCC---hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH
Q 000196 211 RERAVEALRACLRVIEKRETRWRVQWYYRMFEA-TQDGLGRNAP---VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV 286 (1874)
Q Consensus 211 R~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~-~~~~l~~~~~---~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l 286 (1874)
=.+|..|+..+...........+..++.+++.+ +..++.-... .+.+...+..+..++...|-....|+.++...+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888999988887665433333455555554443 6666543222 455666666777778777778888888887777
Q ss_pred HHHhhc
Q 000196 287 LRYLEH 292 (1874)
Q Consensus 287 l~~~~~ 292 (1874)
...+.+
T Consensus 271 ~~~l~n 276 (282)
T PF10521_consen 271 SQILEN 276 (282)
T ss_pred HHHhcC
Confidence 665544
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=83.53 E-value=26 Score=42.54 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccch
Q 000196 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1874)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1874)
.-+..++.+++...|..|+..|..=.... .++|+|-+++.+.++.-.. .+...-...++++..|+.+..=.+.||+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl~--~LlPyf~~fI~~~v~~n~~--~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGLQ--QLLPYFVRFIAEGVTVNLD--QNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCch--hhhhHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 33444555667778888887765322222 3678888777665543111 0233334455666666666555678999
Q ss_pred HHHHHHHHHHhhccCC-----CCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh-hHHHHHHHHH
Q 000196 682 APIHKALVARLLEGTG-----INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLG 755 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~-----~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~-~r~~A~~~Lg 755 (1874)
..+++.++..+-.... .+....++..+...++.++...+.......+.++..+.+.|.|..... ..=-|+.+|+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 9999988877643311 123567888899999999998887665566677778888887754322 2334455544
Q ss_pred H
Q 000196 756 Q 756 (1874)
Q Consensus 756 ~ 756 (1874)
.
T Consensus 337 ~ 337 (343)
T cd08050 337 A 337 (343)
T ss_pred H
Confidence 4
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=83.20 E-value=5.1 Score=35.53 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
|+...|...+....+.|+++.|...+.++..++|+ .+.+.+-.+...|.+|+ +..+|+..++..++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----------~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----------NAEAYYNLGLAYMKLGK--DYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988763 47788999999999984 25789998887653
|
... |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.13 E-value=1e+02 Score=37.50 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=52.2
Q ss_pred hHHHHHHHhCCCCH----HHHHHHHHHHHhhhcCCcCccc------------------------hHHHHHHHHHHHHHhh
Q 000196 600 CLSAIFAALNDEDF----DVREYAISVAGRLSEKNPAYVL------------------------PALRRHLIQLLTYLEQ 651 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~----~VR~~a~~~l~~l~~~~p~~v~------------------------p~l~~~l~~~l~~l~~ 651 (1874)
.+..|......++. .+++.+-+.|..++......+. +.-.+.|..++..+..
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp 284 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP 284 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC
Confidence 45555554444444 8999999999998863222221 1223667777776665
Q ss_pred CCCChHhHHHHHHHHHHHHHhCccccccchHHHH
Q 000196 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1874)
Q Consensus 652 ~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1874)
. ++..+ .+++-.+.+++|+.+.||+...-
T Consensus 285 ~-e~~~q----~~Lvl~Il~~~PeLva~Y~~~~~ 313 (330)
T PF11707_consen 285 W-EDDRQ----QELVLKILKACPELVAPYFNNLP 313 (330)
T ss_pred C-ccHHH----HHHHHHHHHHChHHHHHHHHhhh
Confidence 5 44443 35677888999999999987653
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.95 E-value=6.8 Score=34.73 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
..++.+..|.+|++++|+...+|..+|..+.+.- +-...|++.|-++|++
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------------THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999998876521 1334788888888876
|
... |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.78 E-value=77 Score=35.99 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
+.+..+...+.|++.-.|..+..++|+|-.-. -.|.+.+.|.. ....+-+|.+|+.+||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---ai~~L~k~L~d-------~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQSPA---AIPSLIKVLLD-------ETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccchh---hhHHHHHHHHh-------hhcchHHHHHHHHHHHhhcC-------
Confidence 56788888999999999999999999986533 35777765532 12457889999999999974
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
+..+++|...+.|+ .+-|+..+..+++.+--..|
T Consensus 250 ---e~~~~vL~e~~~D~-----~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 250 ---EDCVEVLKEYLGDE-----ERVVRESCEVALDMLEYENS 283 (289)
T ss_pred ---HHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhcc
Confidence 33456666667764 55566666666665543333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.4e+02 Score=37.38 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...+..++....+.|..+.|.+.|.+..+..+ +|.....++.+. .| +..++++.+++..+..
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-----------~~~l~~l~~~l~--~~---~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-----------DERLVLLIPRLK--TN---NPEQLEKVLRQQIKQH 324 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CHHHHHHHhhcc--CC---ChHHHHHHHHHHHhhC
Confidence 5578899999999999999999999998876322 355555555542 24 3577899888877543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
..+ ..-.-..++.++..++| .+...+|+++.+..|+. ..+..+|....+.
T Consensus 325 P~~---------------~~l~l~lgrl~~~~~~~-------------~~A~~~le~al~~~P~~-~~~~~La~~~~~~- 374 (398)
T PRK10747 325 GDT---------------PLLWSTLGQLLMKHGEW-------------QEASLAFRAALKQRPDA-YDYAWLADALDRL- 374 (398)
T ss_pred CCC---------------HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-
Confidence 211 11123456766666666 56778999999999875 4566677664431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
+ -...|..+|-+++.+
T Consensus 375 ------g-------~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 ------H-------KPEEAAAMRRDGLML 390 (398)
T ss_pred ------C-------CHHHHHHHHHHHHhh
Confidence 1 123568888888765
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.52 E-value=43 Score=40.19 Aligned_cols=58 Identities=31% Similarity=0.369 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchH-HHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhh
Q 000196 123 RDREILVLASKVLGHLARAGGAMTAD-EVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~-~v~~~~~~~~~~l~---~~~~~~~r~aA~~~l~~la~~ 183 (1874)
.|+.+.+-++-+||..+.+||..... .| =+++-|||- ..+++-.|+-|+++...|+.+
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmv---eKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMV---EKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHH---HhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 47889999999999999987654322 33 367778974 456888999999998888765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=82.39 E-value=2.8 Score=37.07 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=39.7
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
+.|+|++|++.|++.+...++. .+...++.+|+.+.|+++.-....+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5689999999999998876553 467789999999999999887776654
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.69 E-value=22 Score=47.21 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=99.5
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH-HHHHHHHhhCCC-ChHhHHHHHHHHHHHHHhCcccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL-IQLLTYLEQSSA-DNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l-~~~l~~l~~~~~-~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
+.+.++.+|+.+-.+.|..-+-|+.++....|..-..-+.+-- .-++..+..++. +++.|..|+-.|..+++..+..-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 5677888889888999998888999888777653211111100 001111222112 24788899999999998754221
Q ss_pred ccc-hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc-chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH
Q 000196 678 RPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1874)
Q Consensus 678 ~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg 755 (1874)
+.- -..++.+++..+.++ ..+-+++=++.|||.|=+.... .+.--=+..-..++..|.|+ ..++|.+|+.+||
T Consensus 593 ~acl~~~li~iCle~lnd~----~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDD----PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALG 667 (1387)
T ss_pred HHhccccHHHHHHHHhcCC----ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 111 135677888888874 2567788889999988654321 11111122344566677775 6899999999999
Q ss_pred HHHhhc
Q 000196 756 QVVQST 761 (1874)
Q Consensus 756 ~l~~~~ 761 (1874)
.++.+.
T Consensus 668 tfl~~~ 673 (1387)
T KOG1517|consen 668 TFLSNG 673 (1387)
T ss_pred HHhccc
Confidence 998864
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=81.49 E-value=2.7 Score=39.20 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=46.3
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---hhh-hhhcHHHHHHhcCHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---ELD-VQLKESWYEKLQRWDDAL 1374 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---~~~-~~~~~~~~E~lg~W~~Al 1374 (1874)
+.|..|+.+.|..+...+++ + ....+-.|...|-+.|+.+.+..+++.... +.+ .-+.+.-+.++|+|++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 67888999988877643210 1 233455578888888888888877754111 111 112244577788888888
Q ss_pred HHHHH
Q 000196 1375 KAYTN 1379 (1874)
Q Consensus 1375 ~~y~~ 1379 (1874)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=81.38 E-value=15 Score=37.78 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1874)
..++|+..-..+++.++... -...+.++.|-.-++..++.++..|+.+|..++++++..+...+ ++++.+++.
T Consensus 13 ~~~~D~~~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 13 LEEPDWALNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred cCCccHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 34578888778888775321 11246788888889999999999999999999999987553333 345555444
Q ss_pred HHhhC-CCChHhHHHHHHHHHHHHHhCcc
Q 000196 648 YLEQS-SADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 648 ~l~~~-~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
-+... ..+...+..++.++..-....+.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44331 25667888888888888776653
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.95 E-value=1.8e+02 Score=37.38 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1874)
-..|+-+++.--+.|....|...|.++++++|+
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 467888888888888888888888887777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.92 E-value=1.7e+02 Score=37.05 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1563 l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
...+++.+....-|.-|=..+++..+.+....++..+|- ++.+..-++-.+...|+.. +=+..-.++
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf----------h~~~~~~~ia~l~el~~~n---~Lf~lsh~L 304 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF----------HLPCLPLHIACLYELGKSN---KLFLLSHKL 304 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC----------CcchHHHHHHHHHHhcccc---hHHHHHHHH
Confidence 334567778888888899999999999999998887652 3455555666888888642 233222334
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
++.... .|--++-+|-+-.-+ ...++...+|.+|+.+||..+.||..+|+..
T Consensus 305 V~~yP~----------------------~a~sW~aVg~YYl~i------~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 305 VDLYPS----------------------KALSWFAVGCYYLMI------GKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred HHhCCC----------------------CCcchhhHHHHHHHh------cCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 332211 011122233333222 2357899999999999999999999998764
Q ss_pred H
Q 000196 1723 T 1723 (1874)
Q Consensus 1723 ~ 1723 (1874)
.
T Consensus 357 a 357 (611)
T KOG1173|consen 357 A 357 (611)
T ss_pred h
Confidence 4
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.90 E-value=4.3 Score=32.43 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000196 1674 VYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1874)
Q Consensus 1674 ~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1874)
.++.+|.+..+. ..+++..+.|+++++.+|++..+|+.+|.
T Consensus 3 ~~~~la~~~~~~------G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRL------GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666654 35789999999999999999999999884
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.87 E-value=4.3 Score=50.70 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=74.5
Q ss_pred hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000196 1024 EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1874)
Q Consensus 1024 ~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1874)
+|...-+|.+.+.+++.+.+.+|..|+-.+|++.-+. ...+..+.+-|.|-|.+.+..+|+.++-++..++..-.-..
T Consensus 929 ~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf--N~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV 1006 (1128)
T COG5098 929 EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF--NTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV 1006 (1128)
T ss_pred HHHHHHHHHHHHHHhhCCCcceeccceeeccccceeh--hhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee
Confidence 4555567888888887777889999999999997764 47788899999999999999999999999999998766666
Q ss_pred ccchhhHHHHHHh
Q 000196 1104 TIFIPSIHKLLLK 1116 (1874)
Q Consensus 1104 ~~~ip~i~~~l~~ 1116 (1874)
.-+++.+...+..
T Consensus 1007 KGqlg~ma~~L~d 1019 (1128)
T COG5098 1007 KGQLGKMALLLTD 1019 (1128)
T ss_pred ccchhhhHhhccC
Confidence 6677777776644
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=80.87 E-value=32 Score=35.18 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.......+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----------NSRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 34667788899999999999999999888776542 46777778888877774 578888887655321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1874)
.. .......+|.+|...|+ .+..+..|+.+.+++|+..+.+
T Consensus 82 p~---------------~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PD---------------DPRPYFHAAECLLALGE-------------PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CC---------------ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhccccchHH
Confidence 10 01112234555555544 4667788999999998765533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=80.75 E-value=21 Score=46.01 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=95.5
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC--CHHHHHHHHHHH---HhhhcCCcCccchHHHHHHHHHH-
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE--DFDVREYAISVA---GRLSEKNPAYVLPALRRHLIQLL- 646 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~--~~~VR~~a~~~l---~~l~~~~p~~v~p~l~~~l~~~l- 646 (1874)
.++.+|..++.-|.. +-...-..+.+++.++.++..+ +..+|..+++.+ .....+.+..+...++..+..-+
T Consensus 295 a~~~lq~kIL~~L~k--S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 295 ASPRLQEKILSLLSK--SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CCHHHHHHHHHHHHH--hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 356788888888852 1111111256788899999887 778999999999 77777776655555665554322
Q ss_pred HHHh------hCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 647 TYLE------QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 647 ~~l~------~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
..+. .+..+...|..+=++||.+++..+..+..= -.++.-|...+.++ .++++.++-.|++.++....
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~-----~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDE-----SPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCc-----chHHHHHHHHHHHHHHHHHh
Confidence 2221 111355678889999999999999887433 34556666666543 78888888899999887654
Q ss_pred c
Q 000196 721 F 721 (1874)
Q Consensus 721 ~ 721 (1874)
.
T Consensus 447 ~ 447 (501)
T PF13001_consen 447 D 447 (501)
T ss_pred c
Confidence 3
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=2.8e+02 Score=39.14 Aligned_cols=141 Identities=15% Similarity=0.031 Sum_probs=88.1
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHH--------HhhcCChHHHhHHHHHHhchhh---hhhc-HHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI--------NNQLHQHEAAVGILTYAQKELD---VQLK-ESWYEK 1366 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i--------y~~L~~~D~~~Gi~~~~~~~~~---~~~~-~~~~E~ 1366 (1874)
+.|.+|.-+.|..+... ++.++..-.|..+ |.+.++.+.+-- .+....... ..+. ...|++
T Consensus 122 ~~~~kA~~~ye~l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ------KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ccChhHHHHHHHHHHhC------CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 88999999988887644 3345666667776 888877776665 432222211 2333 557999
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH-hhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhh
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA-LARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQ 1445 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~-Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~ 1445 (1874)
+|+|++|+..|.+.....+... +....+-..+.+ +++ +.+....+.... .+ ..+....++.+-..|+-+.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~---~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d----~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSA---AERRQWFDVLLAGQLD-DRLLALQSQGIF-TD----PQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cC----HHHHHHHHHHHHHCCCHHH
Confidence 9999999999998876544332 222223235555 577 666655322111 11 2233455677888999999
Q ss_pred HHHHHhhcCC
Q 000196 1446 MAEYVSRLDD 1455 (1874)
Q Consensus 1446 ~~~~~~~~~~ 1455 (1874)
..+.+..++.
T Consensus 266 A~~~L~~~~~ 275 (987)
T PRK09782 266 LQHYLIENKP 275 (987)
T ss_pred HHHHHHhCcc
Confidence 8888887754
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=80.11 E-value=47 Score=44.54 Aligned_cols=101 Identities=25% Similarity=0.232 Sum_probs=59.1
Q ss_pred hccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC--CcHHHHHHHHHHHHhhccc
Q 000196 982 RTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD--APVDIRRAAIETLTRLIPR 1059 (1874)
Q Consensus 982 ~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~--~~~~vr~~ai~~l~~l~~~ 1059 (1874)
..-...+++.+.+.+.......+.....-.|.++.++|- ..++|.+...+... .+..+|..|+.++.+++..
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 333444555555555432223344556667778877772 24677777777543 6789999999999987432
Q ss_pred ccccchhHhHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 000196 1060 VQVTGHISSLVHHLKLVLDG--KNDELRKDAVDALC 1093 (1874)
Q Consensus 1060 ~~~~~~~~~ii~~l~~~l~~--~~~~l~~~al~~L~ 1093 (1874)
+...+...+.+++.+ .+.++|-+|+..|.
T Consensus 555 -----~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 555 -----CPEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp ------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 233444455555543 35789999987663
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.10 E-value=1.4e+02 Score=38.94 Aligned_cols=225 Identities=12% Similarity=0.134 Sum_probs=122.0
Q ss_pred hHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC------------------CCcchHH
Q 000196 88 GALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG------------------GAMTADE 149 (1874)
Q Consensus 88 ~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~------------------g~~~~~~ 149 (1874)
+++-||..|-++..-++.+ -..|..-|..++|.. +..| .-.+.|-.|...- |....+|
T Consensus 271 ~~~~aLrfLD~l~~kdn~q-Ks~Flk~Ls~~ip~f-p~rv--~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~ 346 (700)
T KOG2137|consen 271 PGLKALRFLDDLPQKDNSQ-KSSFLKGLSKLIPTF-PARV--LFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEF 346 (700)
T ss_pred chhhhhhhcccccccCcHH-HHHHHHHHHHhhccC-CHHH--HHHhhhhHHHHHhccccccccccchhhhhhhccchhhh
Confidence 3666666665554222333 355777788888742 2333 2234444443320 1112334
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHH---HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKE---MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~---la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.+..++.+...+.. ..-+.+-+.++.. |.+..|.- .....|+|.|..++.|.+..+++.+...+..+++.+-
T Consensus 347 ~~~~~p~l~pi~~~---~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 347 GPKMLPALKPIYSA---SDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhhHHHHHHhcc---CCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 44444444443332 1223444455543 44444442 3567899999999999999999999998887776543
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLP 306 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~ 306 (1874)
.... =+.++|.+..-........++..++.|++.++.....+ ..-+....++...+.+++.+-...+.+..
T Consensus 422 --~~~v----k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 422 --VPFV----KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred --HHHH----HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 1111 23456655543333334567888888999888532211 11122233444445677777777666666
Q ss_pred hHhhhChh--hHHHHHHHHHHHHHHHhhc
Q 000196 307 RIAHFLRD--RFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 307 ~la~~~~~--~f~~~yl~~~~~~Ll~~L~ 333 (1874)
.++...+. ++. .+.++|.+.....
T Consensus 493 ~l~~~~~~g~ev~---~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 493 ALALIIYSGVEVM---AENVLPLLIPLSV 518 (700)
T ss_pred HHHhhcccceeee---hhhhhhhhhhhhh
Confidence 65543332 332 2456666555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 3e-24
Identities = 136/1086 (12%), Positives = 310/1086 (28%), Gaps = 90/1086 (8%)
Query: 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102
A+ L +++ + L ++ + + + + A++ + L+
Sbjct: 26 ATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL----AVKCLGPLVSKVKE 81
Query: 103 ENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV-KMALDW 160
V M + E RD + L + + + G+ A V ++
Sbjct: 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141
Query: 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220
+ + A+ I+ +M + + + L P LAVR+R + AL
Sbjct: 142 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 201
Query: 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280
+ + + E L +N + + + + + R G +
Sbjct: 202 LVMSCGNIV-------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 254
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PAERD 339
++ +V+++ D +R ++ +N L L P
Sbjct: 255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNY 313
Query: 340 SGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399
A G+ + ++ + + + + L V + M P
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373
Query: 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAA 459
V L F D + P +Q L D + ++ + +
Sbjct: 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRP-VQSWLCDPDAMEQGETPLTMLQSQV 432
Query: 460 TPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYL-DDEDKAT 518
I + ++ S + + + + ++ L D +
Sbjct: 433 PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN 492
Query: 519 RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR 578
K AL C ++ + S F + + ++A V D +
Sbjct: 493 LKIDALSCLYVILCNHSPQVFHPHVQA----------------LVPPVVACVGDPFYKIT 536
Query: 579 HSIFSS----------LYGNRGFDDFLAQADCLSAIFAALNDEDF--DVREYAISVAGRL 626
L FD D + L D +V+E AIS G++
Sbjct: 537 SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596
Query: 627 SEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIH 685
L L L + + R + K L + + ++ +RP +
Sbjct: 597 ICNLG----DNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652
Query: 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745
L + L + G L + L + + + + + + L+ + +
Sbjct: 653 PILASFL-----RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805
++A+S L + + ++ + +L L+ ++ L+ + +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISG--SILNELIGLVRSPLLQGGALSAMLDFFQALVVT 765
Query: 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865
+ L + S + H Q + V + +
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 866 LRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGT 925
S S + SL + + L L V+ + F ++ +
Sbjct: 826 KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF------SSPSEEVKSAASYA 879
Query: 926 LVSIVRQHIRKYLQELFSLISE-------LWSSFSLPATNRTYRGLP--VLHLVQQLCLA 976
L SI ++ +YL + I+ L S ++ + GL V ++ L
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKH 939
Query: 977 LNDE---------------FRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021
+LP L + V + T+
Sbjct: 940 CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP 999
Query: 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDG 1079
+D + + ++ + D +++RR A+ T + + +++ HL
Sbjct: 1000 IDPLLKNCIGDFLKTLE-DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKV 1058
Query: 1080 KNDELR 1085
+ + +R
Sbjct: 1059 RKELIR 1064
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 3e-21
Identities = 142/1118 (12%), Positives = 325/1118 (29%), Gaps = 119/1118 (10%)
Query: 131 ASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190
+ ++ L + + D VKM L L D+ + AV L +
Sbjct: 27 TNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQNLAVKCLGPLVSKVK---EY 82
Query: 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY--RMFEATQDGL 248
V VD + + +R+ + L+ + + + + ++ +
Sbjct: 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI 142
Query: 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308
+ V +L + ++L G +++ + + +L L VR L +
Sbjct: 143 AKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202
Query: 309 AHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLR 368
+ + ++ ++ L+ + + + ++ + YL I +
Sbjct: 203 VMSCGNIVFVDLIEHLLSE-LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV 261
Query: 369 EAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA-GLSTTLVDALEQITVS 427
+ + + + R + PHV +++I E +
Sbjct: 262 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN 321
Query: 428 IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487
D + + R AA V
Sbjct: 322 AMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV--------------------- 360
Query: 488 TLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547
++ + + + +++ + ++ + D L+ + + +
Sbjct: 361 -VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ--TRPVQSWLCDPDA 417
Query: 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA 607
G +++ V + + A+
Sbjct: 418 MEQGETPLTMLQSQVPNI-----------------------------------VKALHKQ 442
Query: 608 LNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
+ ++ R+ ++ L P + + + ++ L S+ + + ++ L
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 668 CLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV-------G 719
++ N ++ P++ + +VA + + I S L+ L +V
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGD-----PFYKITSEALLVTQQLVKVIRPLDQPS 557
Query: 720 GFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778
F YI +L ++ L +E A+S +GQ++ + G + P L +
Sbjct: 558 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD--LPNTLQIF 615
Query: 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDE 838
L+ L E TR +K L ++ R G + +
Sbjct: 616 LERLKNE---ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLS 672
Query: 839 FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP 898
L +++ S A+ + L S Q + L + K
Sbjct: 673 ALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISG 732
Query: 899 KVLPDLFHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
+L +L VR+ + LV ++ Y+ L L ++S +
Sbjct: 733 SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNL-GYMDLLRMLTGPVYSQSTAL- 790
Query: 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016
+ + + AL P ++ IQ + ++ D +L +L E
Sbjct: 791 -----THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRST-DSIRLLALLSLGE 844
Query: 1017 VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLV 1076
V L ++ F +++ AA L + G++ + +
Sbjct: 845 VGHHIDLSGQLELKSVILEAFS-SPSEEVKSAASYALGSI-----SVGNLPEYLPFVLQE 898
Query: 1077 LDGKNDELRKDAVDALC-CLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135
+ + + + +L ++ A ++ +I LLLKH E E R
Sbjct: 899 ITSQPKR-QYLLLHSLKEIISSASVVGLKPYVENIWALLLKH------CECAEEGTRNVV 951
Query: 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEW 1195
LG +P + L S A K +
Sbjct: 952 AECLGKLTLIDPETLLP--RLKGYLISGSSYARSSVVTAVKFTISDH--PQPIDPLLKNC 1007
Query: 1196 MRHLSIELLKESPSP----ALRTCARLAQLQPFVGREL 1229
+ ++ L++ AL T A +P + R+L
Sbjct: 1008 IGDF-LKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDL 1044
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 95.6 bits (236), Expect = 1e-19
Identities = 109/878 (12%), Positives = 246/878 (28%), Gaps = 122/878 (13%)
Query: 424 ITVSIPSLLPTIQD-----RL--LDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDL 476
+ I +LL + R + + L K + + V I + + D
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKV---VKMILKLLEDK 60
Query: 477 NGSAPVQ-LALQTLARFNFKGHD-LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534
NG VQ LA++ L K + +E D++ + + + R +++ ++
Sbjct: 61 NGE--VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELP 118
Query: 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR---HSIFSSLYGNRGF 591
S + A+ + +++ +L A DV+V+ I + + +G
Sbjct: 119 PASSGSALAAN-----------VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167
Query: 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ 651
L+ + L VR+ I G L V L HL+ L
Sbjct: 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSEL----S 223
Query: 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711
+ + + + R I Y+ I +V ++ + +
Sbjct: 224 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-----DDELREYCIQA 278
Query: 712 VGDLARVGGFGMRQYISELMPLIVEAL--------------------------------- 738
R + ++S ++ + ++ L
Sbjct: 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDE 338
Query: 739 ---LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795
D + R A L VV + ++ + Y + L+ E + + +V
Sbjct: 339 YSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRF-KEREENVKADVF 395
Query: 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAA------------------SDSGQHIQPMD 837
+ T S + Q
Sbjct: 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455
Query: 838 EFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVP 895
+L + + V + ++ L D S +S + S +++ P
Sbjct: 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 515
Query: 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-------QHIRKYLQELFSLISEL 948
++ ++P + V + LV ++R Y+++LF+ +
Sbjct: 516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575
Query: 949 WSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYV 1008
+ + + + + Q+ L D + LP L ++ L +
Sbjct: 576 LKAADIDQEVKE----RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKA 631
Query: 1009 LDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI---PRVQVTGH 1065
L ++ L + +P L + ++ + L LI
Sbjct: 632 LTLI-AGSPLKIDLRPVLGEGVPILASFLR-KNQRALKLGTLSALDILIKNYSDSLTAAM 689
Query: 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT----IFIPSIHKLLLKHRLRH 1121
I +++ L ++ + + + A+ L LA + + + L+ L+
Sbjct: 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQG 749
Query: 1122 KEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGH 1181
+ + + L R + V S Y L
Sbjct: 750 GALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRA 809
Query: 1182 QASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLA 1219
+ + ++ + ++R A L+
Sbjct: 810 CPKEG------PAVVGQFIQDVKNSRSTDSIRLLALLS 841
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 87.1 bits (214), Expect = 4e-17
Identities = 96/697 (13%), Positives = 198/697 (28%), Gaps = 93/697 (13%)
Query: 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE 216
AL ++ R +L E+ H+ V I +L D + + ++
Sbjct: 438 ALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS-SSSNLKID 496
Query: 217 ALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276
AL ++ + + +G + +LL +L++
Sbjct: 497 ALSCLYVILCNHSPQVFHPHVQALVPPVVACVG-DPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 277 SRYREVAEIVLR-YLEHRDRLVRLSITSLLPRIA-------HFLRDRFVTNYLKICMNHI 328
+ + + RL I + A + + L +
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 329 LTVLRIPAERDSGFIALGEMAG-ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVG 387
L L+ R + AL +AG L +L L L + + L L+ +
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 388 NIARAMGPVMEPHVRGLLDIMFSAGLSTT-------LVDALEQITVSIPSLLPTIQDRLL 440
+ + + + + +S + + L + PS L I +L
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 441 DCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL 500
+ + ++ +A + Q L +
Sbjct: 736 NELIGLVRSPLLQGGALSA----------------------MLDFFQALVVTGTNNLGYM 773
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
+ R T K + K VA + + ++ +
Sbjct: 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL-------------TRACPKEGPAVVGQ 820
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
++ + + D+ +R SL D Q + S I A + +V+ A
Sbjct: 821 FIQDVKNSRSTDS---IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAAS 877
Query: 621 SVAGRLSEKNPAYVLPAL----------RRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670
G +S N LP + + L+ L + S++ + + L+
Sbjct: 878 YALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937
Query: 671 RNCERLIRPY----------IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
++CE + I + L+G I+ ++ S V+ V
Sbjct: 938 KHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 997
Query: 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780
+ + + ++ L D + R VA+ T + +I +L L
Sbjct: 998 QPIDPLLKNCIGDFLKTLED-PDLNVRRVALVTFNSAAHNKPSLIRDL--LDTVLPHLYN 1054
Query: 781 --MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQL 815
+ EL+ REV + P H + L
Sbjct: 1055 ETKVRKELI----REV--------EMGPFKHTVDDGL 1079
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 2e-19
Identities = 33/242 (13%), Positives = 86/242 (35%), Gaps = 26/242 (10%)
Query: 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628
++ + + +R ++ + + + L + L+D+ + V + AIS+ +++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 629 KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688
P L++ L LL S +E AK G + + L++ I +
Sbjct: 62 TREDLYEPMLKK-LFSLLK----KSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANY 116
Query: 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKRE 748
+ V + ++A+ M + + M +L +
Sbjct: 117 ---------RIGDEKTKINVSYALEEIAKANPMLMASIVRDFMS-----MLSSKNREDKL 162
Query: 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808
A++ + + +++ + P+ L ++ +L+ R ++ L + L+
Sbjct: 163 TALNFIEAMGENSFKYVNPF------LPRIINLLHDGD-EIVRASAVEALVHLATLNDKL 215
Query: 809 HK 810
K
Sbjct: 216 RK 217
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 8e-10
Identities = 29/265 (10%), Positives = 84/265 (31%), Gaps = 47/265 (17%)
Query: 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560
E ++ LDD+ K+A + R L E
Sbjct: 31 ESVLKKLIELLDDDLWTVVKNAISIIMVI---------------------AKTREDLYEP 69
Query: 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
+++KL + + I + G + + +FA D +
Sbjct: 70 MLKKLFSLLKKSEAIPLTQEIAKAF-GQMAKEKPELVKSMIPVLFANYRIGDEKTKINVS 128
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
+++ NP + +R ++ L + ++ + + + + N + + P+
Sbjct: 129 YALEEIAKANPMLMASIVR----DFMSMLSSKNRED--KLTALNFIEAMGENSFKYVNPF 182
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-- 738
+ ++ L + + + + + + LA + +L ++++ L
Sbjct: 183 L----PRIINLLHD-----GDEIVRASAVEALVHLATLN--------DKLRKVVIKRLEE 225
Query: 739 LDGAAVTKREVAVSTLGQVVQSTGY 763
L+ + + + +++ G+
Sbjct: 226 LNDTSSLVNKTVKEGISRLLLLEGH 250
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 8e-16
Identities = 63/602 (10%), Positives = 167/602 (27%), Gaps = 88/602 (14%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSL-----YGNRGFDDFLAQADCLSAIFAALND 610
L+ + A + VR + ++L + + + + + A
Sbjct: 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235
Query: 611 EDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670
ED +V+ A ++ K ++ P + + LT S ++K + + +
Sbjct: 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTIC 294
Query: 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD---------------- 714
+ L + + I + +L +
Sbjct: 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGAC 354
Query: 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774
L + ++ + E + RE AV G ++ V Q
Sbjct: 355 LQLFAQNCGNHILEPVLEFV-EQNITADNWRNREAAVMAFGSIMDGPDKVQRT-YYVHQA 412
Query: 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQ 834
L +L ++N D + + R A + I
Sbjct: 413 LPSILNLMN---------------------DQSLQVKETTAWC----IGRIADSVAESID 447
Query: 835 PMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-- 892
P + + + + L+D +++ + + +
Sbjct: 448 P----------------QQHLPGVVQACLIGLQDHP--KVATNCSWTIINLVEQLAEATP 489
Query: 893 --CVPYLPKVLPDLFHTVRTCDD--YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISEL 948
+ P ++ L D+ + L T+V + + + + + +
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549
Query: 949 WSSFSLPATN-------RTYRGL--PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999
N ++ + L +L ++ + +++ ++L
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609
Query: 1000 ERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIP 1058
+ V + L G ++++ P L++ + A+ + +
Sbjct: 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISN 668
Query: 1059 RV--QVTGHISSLVHHL--KLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114
+ + ++++ L + EL+ + +A +G DF ++ I L
Sbjct: 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALC 728
Query: 1115 LK 1116
+
Sbjct: 729 VA 730
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 8e-14
Identities = 93/765 (12%), Positives = 213/765 (27%), Gaps = 115/765 (15%)
Query: 385 CVGNIARAMGPVME-PHVRGLLDIMFSAGLSTTLVDA--------LEQITVSIPSLLPTI 435
+ IA P P + ++ A + A E +L+ +
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177
Query: 436 QDRLLDCISFVLSKSHYSQARPAAT-----------------PIRGNVMNIPQQVSDLNG 478
+ L+ + S R AA R +M + + +
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237
Query: 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYL-----DDEDKATRKDAALCCCKLVANS 533
A L + K + ++ + + L + +
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297
Query: 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD 593
++ I+++V L + + + ++
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNL-LNLLTRQNEDPEDDDWNVSMSAGACLQ 356
Query: 594 FLAQAD-------CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646
AQ L + + +++ RE A+ G + + ++ Q L
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR---TYYVHQAL 413
Query: 647 TYLEQSSADNKC--REESAKLLGCLIRNCERLIRP--YIAPIHKALVARLLEGTGINANN 702
+ D +E +A +G + + I P ++ + +A + L + +
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD------HP 467
Query: 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA-----VTKREVAVSTLGQV 757
+ + T+ +L I P +V+ L+ A R A S L +
Sbjct: 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527
Query: 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817
V+ + + ++ L + + L+ + L S
Sbjct: 528 VEYATDTVAET--SASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL----------QSN 575
Query: 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQK 877
+ S ++P + + + R+L A
Sbjct: 576 ILTVLAAVIRKSPSSVEP------------------VADMLMGLFFRLLEKKDSAFIEDD 617
Query: 878 VVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKY 937
V ++ + S+G G YL P L + D + + + + + + R+Y
Sbjct: 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY 677
Query: 938 LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
+ ++++++ S+ + + VL + + + +F +L I+ C+ +
Sbjct: 678 SDAMMNVLAQMISNPNARRELKP----AVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733
Query: 998 DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057
+ D + +L L DA V I + L
Sbjct: 734 TKPENGTLEAL--------------DYQIKVLEAVL------DAYVGIVAGLHDKPEALF 773
Query: 1058 PRVQVTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGE 1101
P V I + + D + AV + +A +
Sbjct: 774 PYVG---TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 5e-11
Identities = 69/556 (12%), Positives = 171/556 (30%), Gaps = 48/556 (8%)
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
+ AL + + A + +++ + L++++ + +
Sbjct: 98 TNALTALVSIEPRIANAAAQLIAAIAD---IELPHGAWPELMKIMVDNTGAEQPENVKRA 154
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--G 719
S LG + + + + ++ + L+A + + + L + D
Sbjct: 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214
Query: 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779
+ LM ++ EA + L +++ + PY Q L L
Sbjct: 215 NMEREGERNYLMQVVCEATQAEDIEVQAAA-FGCLCKIMSKYYTFMKPY--MEQALYALT 271
Query: 780 KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEF 839
++ + + Q S + A S + + P
Sbjct: 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331
Query: 840 PMDLWPSFATSEDYYSTVAINSLMRILRD---------------PSLASYHQKVVGSLMF 884
+ +D+ +++ + +++ ++ + + + + +
Sbjct: 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVM 391
Query: 885 IFKSMGLGC-----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
F S+ G Y+ + LP + + + +K+ W +G + V + I Q
Sbjct: 392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-Q 450
Query: 940 ELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999
L ++ T +++LV+QL A P ++ I +
Sbjct: 451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510
Query: 1000 ERCNDY-TYVLDILHTL-----EVFGGTLDEHMHLLLPALIRLFKVDAPV---------- 1043
+ + L T+ + T ++ L + VD
Sbjct: 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570
Query: 1044 DIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLD-GKNDELRKDAVDALCCLAHALG 1100
+++ + L +I + V L+ +L+ + + D A+ LA +LG
Sbjct: 571 ELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630
Query: 1101 EDFTIFIPSIHKLLLK 1116
+ F ++ + LLK
Sbjct: 631 KGFEKYLETFSPYLLK 646
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 9e-07
Identities = 75/621 (12%), Positives = 186/621 (29%), Gaps = 92/621 (14%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKR 228
+ AA L ++ T ++ + + A+ +A + P V VE + E+
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST---ICEEE 297
Query: 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR 288
+ +P+ S + +L ++ +++ N + +
Sbjct: 298 IDIAY-----------ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNE-------- 338
Query: 289 YLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALG 346
E D V +S + L A + + + + + R++ +A G
Sbjct: 339 DPEDDDWNVSMSAGACLQLFAQNCGNHILE----PVLEFVEQNITADNWRNREAAVMAFG 394
Query: 347 EMA-GALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLL 405
+ G + +Y+ + + + + C+G IA ++ ++P
Sbjct: 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ----- 449
Query: 406 DIMFSAGLSTTLVDALEQITVSIPSLLPTIQD---------RLLDCISFVLSKSHYSQAR 456
L + + + L +QD + + L+++ S
Sbjct: 450 -------------QHLPGV---VQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 457 PAATPIRGNVMNIPQ-QVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLD--- 512
+ ++ ++ N A AL T+ + + E + +D
Sbjct: 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA--TDTVAETSASISTFVMDKLG 551
Query: 513 ----DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIA 568
++ + A +L +N + + A+ ++ + + L+
Sbjct: 552 QTMSVDENQLTLEDAQSLQELQSNILTVL------AAVIRKSPSSVEPVADMLMGLFFRL 605
Query: 569 AVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623
+ +F ++ +GF+ +L + ALN D V A+
Sbjct: 606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVDSPVSITAVGFI 663
Query: 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683
+S + L + +A + + + G + N PY+
Sbjct: 664 ADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND 723
Query: 684 IHKALVARL------LEGTGINANNGIISGVLVTVGDLARVGGFG---MRQYISELMPLI 734
I VA ++ ++ VL + + Y+ + I
Sbjct: 724 IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFI 783
Query: 735 VEALLDGAAVTKREVAVSTLG 755
+ D ++ + + +G
Sbjct: 784 AQVAEDPQLYSEDATSRAAVG 804
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 109/698 (15%), Positives = 207/698 (29%), Gaps = 96/698 (13%)
Query: 29 ILADLCTHGNP--KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAEN 86
L L + EGA AL+K E+ A L + R ++ + + + +
Sbjct: 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR 191
Query: 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKR--DREILVLASKVLGHLARAGGA 144
A+ +++ I + + +++ +F + + E+ + L L
Sbjct: 192 SHAVACVNQFIIS---RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248
Query: 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL-------------KEMAENASTVFNVH 191
+ V+ L + A L + + + + N
Sbjct: 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 308
Query: 192 VAEFVDAIWVALR----------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241
+D I + +R+ + AL V + +
Sbjct: 309 KYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 368
Query: 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSI 301
+ +L +G + + M+ E+ +++ L + LVR
Sbjct: 369 --------FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420
Query: 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVL--RIPAERDSGFIALGEMAGALDGELFHY 359
L R AH++ + YLK M +L + +++ A + EL Y
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480
Query: 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVD 419
L I L A + + K L +G +A ++G + + L L+
Sbjct: 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN-------KPEYIQMLMPPLIQ 533
Query: 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479
+ L P LL+C+S V + S P P+ +N+
Sbjct: 534 KWNMLKDEDKDLFP-----LLECLSSVATALQ-SGFLPYCEPVYQRCVNL---------- 577
Query: 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF 539
VQ L N + + DK A L G +
Sbjct: 578 --VQKTLAQAMLNNAQPDQY------------EAPDKDFMIVALDLLSGLAEGL--GGNI 621
Query: 540 TQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQ 597
Q + + L+ + D VR S F+ L F
Sbjct: 622 EQL--------------VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 667
Query: 598 A-DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656
D + + LN E V A G +S + + P + L QL+ + + +
Sbjct: 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPK 727
Query: 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694
E +A +G L C + + P + + L
Sbjct: 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 8e-14
Identities = 85/591 (14%), Positives = 187/591 (31%), Gaps = 91/591 (15%)
Query: 566 LIAAVADADVTVRHS---IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622
+ + +R + +R L + +FA DE+ +VR+
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238
Query: 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE---------ESAKLLGCLIRNC 673
L E +LP + +++ + Q +N E E L+R+
Sbjct: 239 LVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297
Query: 674 ERLIRPYIAPIHKALVARLLEGTGINANNGIISG-----VLVTVGDLARVGGFGMRQYIS 728
+LI + + + + +L + +G + V R +
Sbjct: 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL 357
Query: 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVW 788
+ +++ LL +E + LG + + + PY P+L+ L++ L+
Sbjct: 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLS----- 410
Query: 789 STRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848
D A R+ + + +
Sbjct: 411 ----------------DKKALVRS-----------ITCWTLSR-------YAHWVVSQPP 436
Query: 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV 908
D Y + L++ + D + + + + + VPYL +L L
Sbjct: 437 ---DTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492
Query: 909 RTCDDYLKDYITWKLGTLVSIVRQHIRK--YLQELFSLISELWSSFSLPATNRTYRGLPV 966
+ +GTL V H+ K Y+Q L + + W+ + P+
Sbjct: 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPL 548
Query: 967 LHLVQQLCLALNDEFRTHLPVILPCCIQVLS-------------DAERCNDYTYVLDILH 1013
L + + AL F + + C+ ++ D D +++ L
Sbjct: 549 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608
Query: 1014 TLEVFGGTLDEHM------HLLLPALIRLFKVDAPVDIRRAAIETLTRLI--PRVQVTGH 1065
L L ++ +L + + + P ++R+++ L L V
Sbjct: 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKACFQHVKPC 667
Query: 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
I+ + L L+ + + +A A+ ++ +G + +IP + L++
Sbjct: 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 3e-12
Identities = 82/567 (14%), Positives = 173/567 (30%), Gaps = 52/567 (9%)
Query: 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661
S + D +R + ++ K P L L LL S D E
Sbjct: 93 SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD-----SEDYNTCEG 147
Query: 662 SAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721
+ L + + ++ + ++ +++ I S + V
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207
Query: 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781
+ +I + + D ++ V L +++ + P+ ++ +L+
Sbjct: 208 ALMLHIDSFIENLFALAGDEEPEVRKNV-CRALVMLLEVRMDRLLPH--MHNIVEYMLQR 264
Query: 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841
+ + E + + + L + S I +
Sbjct: 265 TQDQD-ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE 323
Query: 842 DLWPSFATSEDY----YSTVAINSLMRILRDPSLASYHQKVVGSL-----------MFIF 886
T D+ S A++ L + RD L + L + +
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 383
Query: 887 KSMGLGC----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-----QHIRKY 937
++ GC +PYLP+++P L + ++ W L V +++
Sbjct: 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443
Query: 938 LQELFSLISEL-----------WSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLP 986
+ EL I + +++ A L +++ L A + +L
Sbjct: 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKYQHKNLL 501
Query: 987 VILPCCIQVLSDA--ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPV- 1043
++ I L+D+ N Y+ ++ L L + L P L L V +
Sbjct: 502 ILY-DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 560
Query: 1044 -DIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102
R + VQ T + L + + + + A+D L LA LG +
Sbjct: 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620
Query: 1103 FTIFIPSIHKL-LLKHRLRHKEFEEIE 1128
+ + L L+ ++ K E +
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVRQ 647
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 1e-11
Identities = 69/536 (12%), Positives = 170/536 (31%), Gaps = 45/536 (8%)
Query: 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ 651
D L + D D+++R+ + + L+ +LP + L +LL
Sbjct: 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---- 369
Query: 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711
+ +E +LG + C + + PY+ + L+ L + + S T
Sbjct: 370 -HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-----DKKALVRSITCWT 423
Query: 712 VGDLAR-VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ A V Y+ LM +++ +LD + E A S + + + PY
Sbjct: 424 LSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ-EAACSAFATLEEEACTELVPY-- 480
Query: 771 YPQLLGLLLKMLNG------ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTR 824
+L L+ + +++ + +G + L +
Sbjct: 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540
Query: 825 AASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMF 884
D ++ + L F + +N + + L L + +
Sbjct: 541 EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 600
Query: 885 IFKSMGLGCVPYLPKVL--------------PDLFHTVRTCDDYLKDYITWKLGTLVSIV 930
F + L + L + L ++ ++ ++ LG L
Sbjct: 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660
Query: 931 RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILP 990
QH++ + + ++ + + N + ++ + + E + ++P++L
Sbjct: 661 FQHVKPCIADFMPILGTNLNPEFISVCN------NATWAIGEISIQMGIEMQPYIPMVLH 714
Query: 991 CCIQVL--SDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRA 1048
++++ + + + I V + + + + + + +
Sbjct: 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 774
Query: 1049 AIETLTRLIPRVQVTGHISSLVHHLKLVL--DGKNDELRKDAVDALCCLAHALGED 1102
A + +I V +G I + V D+LR L + +G++
Sbjct: 775 AFRGICTMI-SVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDE 829
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-13
Identities = 86/573 (15%), Positives = 172/573 (30%), Gaps = 103/573 (17%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL-SAIFAALNDEDFD 614
R EL+ L + D D V ++ L CL + + E+
Sbjct: 45 RTRSELLP-FLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETV 102
Query: 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674
VR+ A+ +S ++ L H + L+ L R + L
Sbjct: 103 VRDKAVESLRAISHEHSPSDL---EAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVS 158
Query: 675 RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734
++ + + L + + + +G+ A+V + SE++P+
Sbjct: 159 SAVKAELRQYFRNLCS--------DDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMF 208
Query: 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794
D + R +AV + Q ++ + ++ L + + W R V
Sbjct: 209 SNLASD-EQDSVRLLAVEACVNIAQ----LLPQEDLEALVMPTLRQAAEDK-SWRVRYMV 262
Query: 795 LKVLGIMGALDPHAHKRNQ-------QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSF 847
+ + + EV AAS + EF +L S
Sbjct: 263 ADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK------VKEFCENL--SA 314
Query: 848 ATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG--LGCVPYLPKVLPDLF 905
E+ + + + ++ D + Q V +L + + LG + +LP
Sbjct: 315 DCRENVIMSQILPCIKELVSDAN-----QHVKSALASVIMGLSPILGKDNTIEHLLPLFL 369
Query: 906 HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLP 965
LKD VR +I L + +I
Sbjct: 370 -------AQLKD--------ECPEVRLNIISNLDCVNEVIG------------------- 395
Query: 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH 1025
R +LP +++ D + L I+ + + G L
Sbjct: 396 ---------------IRQLSQSLLPAIVELAED----AKWRVRLAIIEYMPLLAGQLGVE 436
Query: 1026 M--HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDE 1083
L + D IR AA L +L+ + ++++ + + N
Sbjct: 437 FFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL 495
Query: 1084 LRKDAVDALCCLAHALGEDFTI--FIPSIHKLL 1114
R + + L+ G+D T +P++ ++
Sbjct: 496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-10
Identities = 82/633 (12%), Positives = 184/633 (29%), Gaps = 81/633 (12%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
SL + ++ +L N L K + A LG E R +L ++ +
Sbjct: 8 SLYPIAVLIDELR---NEDVQLRLNSIKKLSTIALALGVE---RTRSELLPFLTDTIYDE 61
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
D L + + G V + ++ V+ + + A + L ++
Sbjct: 62 DEV-LLALAEQLGTFTTLVGGPEY--VHCLLPPLESLATVE-ETVVRDKAVESLRAISHE 117
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
+ ++E + L G R +A + S + AE
Sbjct: 118 ---HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFRN 171
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWYYRMFEATQDGLGRNAPVHSIHGS 260
D T VR A L +V+E + + + + QD + A
Sbjct: 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLA-------- 223
Query: 261 LLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL-----RDR 315
+ A + + + + V + + E + VR + + + +
Sbjct: 224 VEACVNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281
Query: 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375
V + + + V + + F + + LP I + +A +
Sbjct: 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVK 341
Query: 376 GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF------SAGLSTTLVDALEQITVSIP 429
+ + ++ +G + + LL + + ++ L+ + I
Sbjct: 342 ----SALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395
Query: 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAAT-----PIRGNVMNIPQQVSDL------NG 478
+ LL I + + + + V ++++ L +
Sbjct: 396 I--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453
Query: 479 SAPV-QLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFS 535
+ + A L + F V+ D + R L C +++
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCG 512
Query: 536 GVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDF 594
+ + + + ++ D VR ++ SL D+
Sbjct: 513 -------------------QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553
Query: 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627
Q++ + D+D DV+ +A LS
Sbjct: 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 74/590 (12%), Positives = 163/590 (27%), Gaps = 93/590 (15%)
Query: 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544
L T G + + + E+ R A +
Sbjct: 71 QLGTFTTL-VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--------- 120
Query: 545 SRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAI 604
+E L+ T R S +A+
Sbjct: 121 -----------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYF 169
Query: 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664
+D+ VR A S G ++ ++ +I + + L D+ R + +
Sbjct: 170 RNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSV-RLLAVE 225
Query: 665 LLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM 723
+ + + + + P + + + + V +L + G
Sbjct: 226 ACVNIAQLLPQEDLEALVMPTLRQAAE--------DKSWRVRYMVADKFTELQKA--VGP 275
Query: 724 RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN 783
++L+P + D A R A + + ++ Q+L + ++++
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEV-RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334
Query: 784 GELVWSTRR-------EVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836
+ + +LG ++ QL EV I +
Sbjct: 335 DA-NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI------ISNL 387
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
D + S + +++ + D ++ + + +G
Sbjct: 388 DCVNEVI------GIRQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLG------ 434
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWK----LGTLVSIVRQ-HIRKYLQELFSLISELWSS 951
+ + C +L D++ L +V + + + +
Sbjct: 435 -VEFFDEKL--NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD 491
Query: 952 FSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE---RCNDYTYV 1008
N +R + L + L + +LP +++ D R N
Sbjct: 492 -----PNYLHR-MTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFN----- 538
Query: 1009 LDILHTLEVFGGTLDEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRL 1056
+ +L+ G LD + P L +L + D VD++ A E LT L
Sbjct: 539 --VAKSLQKIGPILDNSTLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 97/688 (14%), Positives = 214/688 (31%), Gaps = 77/688 (11%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLA-VRERAVEAL-------RAC 221
R AA L +K N+ T + + W+A+ V+ + L +
Sbjct: 54 RVAAGLQIK----NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSA 109
Query: 222 LRVI------EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275
+ + E +W + ++ + N+ H +L A+G + ++
Sbjct: 110 SQCVAGIACAEIPVNQWP-ELIPQLVANVTNP---NSTEHMKESTLEAIGYICQDIDPEQ 165
Query: 276 MSRYREVAEIVL---RYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL 332
+ + E V+L+ T+ L F + F + + ++
Sbjct: 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225
Query: 333 RIPAE---RDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLEALACVGN 388
+ R + L ++ + Y+ P + + EA+ + +L+ + N
Sbjct: 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285
Query: 389 IARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLS 448
+ + S Q V I + T QD D +
Sbjct: 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 345
Query: 449 KSHYSQARPAATPIRGNVMNI--PQQVSDLNGSAPVQ-----LALQTLARFNFKGH--DL 499
K+ AT +++ P + +A + L
Sbjct: 346 KAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL 405
Query: 500 LEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559
+ A +++ + D R AA ++ + L++
Sbjct: 406 VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-----------LAPLLQ 454
Query: 560 ELVEKL-----LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA---------DCLSAIF 605
L+E L + + V A ++ + + + ++ L
Sbjct: 455 CLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT 514
Query: 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ----------SSAD 655
+ ++R A + + + PA+++ + ++ L+Q +S
Sbjct: 515 DRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR 574
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGT-GINANNGIISGVLVTVGD 714
+ + + L L ++ I ++A LL + G+ L+ V
Sbjct: 575 IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634
Query: 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774
L V G +Y+ P + L + A AV +G + ++ I P+ ++
Sbjct: 635 LVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEV 692
Query: 775 LGLLLKMLNGELV-WSTRREVLKVLGIM 801
+ LLL+ L E V S + ++L V G +
Sbjct: 693 MQLLLENLGNENVHRSVKPQILSVFGDI 720
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 1e-11
Identities = 85/564 (15%), Positives = 175/564 (31%), Gaps = 71/564 (12%)
Query: 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQ 644
+ + D +A + D + + GR E + ++L+
Sbjct: 265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324
Query: 645 LLTYLEQSSAD------NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGI 698
+LT + + + L L CE I P++ P ++
Sbjct: 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP--------FIKEHIK 376
Query: 699 NANNGIISGVLVTVGDLARVGGFG-MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757
N + ++ G + ++ + + MP ++E + D + V R+ A T+G++
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV-RDTAAWTVGRI 435
Query: 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817
+ LL L++ L+ + R V +L A++
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLS-----AEPRVASNVCWAFSSLAEAAYEAADVADD 490
Query: 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--PSLASYH 875
T S + + + ++ ++ + A SLM I+++
Sbjct: 491 QEEPATYCLS---SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAV 547
Query: 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVR--- 931
QK +M L +VL H T D D + TL +++R
Sbjct: 548 QKTTLVIM-----------ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596
Query: 932 -QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILP 990
Q + + + + ++ S + + L V L L EF ++ P
Sbjct: 597 HQDALQISDVVMASLLRMFQSTAGSGGVQED----ALMAVSTLVEVLGGEFLKYMEAFKP 652
Query: 991 CCIQVLSDAE----RCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDAPVDI 1045
L + V D+ L DE M LLL L + +
Sbjct: 653 FLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE---NLGNENVHRSV 709
Query: 1046 RRAAIETLTRLI--------PRVQVTGHISSLVHHLKLVLDGKND-------ELRKDAVD 1090
+ + + ++V +++L + +D + ELR+ ++
Sbjct: 710 KPQILSVFGDIALAIGGEFKKYLEVV--LNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767
Query: 1091 ALCCLAHALGEDFTIFIPSIHKLL 1114
A + L D P + +
Sbjct: 768 AYTGIVQGLKGDQENVHPDVMLVQ 791
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-06
Identities = 64/580 (11%), Positives = 178/580 (30%), Gaps = 69/580 (11%)
Query: 596 AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655
A+ + + + L E + + VAG + P P L L+ +T ++
Sbjct: 87 ARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVT---NPNST 143
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715
+E + L + C+ + + ++ +++G + + L L
Sbjct: 144 EHMKEST---LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK--LAATNAL 198
Query: 716 ARVGGFGMRQ-YISELMPLIVEALLDGAAVTKREVAVS---TLGQVVQSTGYVITPYNEY 771
F I++ + + V V+ L +++ + Y
Sbjct: 199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY--M 256
Query: 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTR----AAS 827
L + + + ++ + + + + A
Sbjct: 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316
Query: 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILR---------------DPSLA 872
+ Q++ P+ + +D+ A + +L +
Sbjct: 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376
Query: 873 SYHQKVVGSLMFIFKSMGLGC-----VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLV 927
+ + + + F + G P + + +P L ++ ++D W +G +
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Query: 928 SIVRQHI--RKYLQELFSLISELWSSFSLPATNRTY-------RGLPVLHLVQQLCLALN 978
++ + YL L + E S+ A+N + +
Sbjct: 437 ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 979 DEFRTHLPVILPCCIQVL--SDAERCNDYTYVLDILHTL-----EVFGGTLDEHMHLLLP 1031
+ +I+ ++ D + N + + L + + + + +++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 1032 ALIRLFKVDAPV----------DIRRAAIETLTRLIPRVQ---VTGHISSLVHHLKLVLD 1078
L ++ ++++ + D++ TL ++ +VQ ++ L +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 1079 G--KNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
+ +++DA+ A+ L LG +F ++ + L
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI 656
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 49/320 (15%)
Query: 131 ASKVLGHLARAGGAMTADEVEFQVKMAL---DWLRGDRVEYRRFAAVLILKEMAENAST- 186
A L LA V +K + DW R AAV+ + E
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW-------RYRDAAVMAFGCILEGPEPS 400
Query: 187 VFNVHVAEFVDAIWVALRDPTLAVRERAVEAL-RACLRVIEKRETRWRVQWYYRMFEATQ 245
V + + + ++DP++ VR+ A + R C + E + + +
Sbjct: 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND---VYLAPLLQCLI 457
Query: 246 DGLGRNAPVHS-----------IHGSLLAVGELLRNTGEFMMSRY-----REVAEIVLRY 289
+GL V S V + + +S +++ E R
Sbjct: 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517
Query: 290 LEHRDRLVRLSITSLLPRIAHFLRDRF--VTNYLKICMNHILTVLRIPAE---------- 337
H++ L + SL+ + + +D + V + M + VL++ +
Sbjct: 518 DGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF 577
Query: 338 ---RDSGFIALGEMAGALDGELF-HYLPTITSHLREAIAPRRGKPSL--EALACVGNIAR 391
+ L + + + + + L G + +AL V +
Sbjct: 578 NDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVE 637
Query: 392 AMGPVMEPHVRGLLDIMFSA 411
+G ++ +
Sbjct: 638 VLGGEFLKYMEAFKPFLGIG 657
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-04
Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 26/286 (9%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAI---------------WVALRDPTLAVRERA 214
R +A L E+ +N++ V + I + R ++
Sbjct: 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274
L+ LR ++ ++ + V +L+AV L+ G
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQE--DALMAVSTLVEVLGGE 642
Query: 275 MMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333
+ + L+ + + V L+ L+ + L+ + + M +L L
Sbjct: 643 FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDEVMQLLLENLG 701
Query: 334 IPAERDS----GFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389
S G++A A+ GE YL + + L++A + K + + + +
Sbjct: 702 NENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL 761
Query: 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435
+ V+GL V ++ I S + I
Sbjct: 762 RESCLEAYTGIVQGLKG---DQENVHPDVMLVQPRVEFILSFIDHI 804
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 6e-11
Identities = 103/698 (14%), Positives = 208/698 (29%), Gaps = 207/698 (29%)
Query: 559 EELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSA---IFAALNDEDFDV 615
++++ A V + D + S+ D + D +S +F L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQE 76
Query: 616 REYAISVAGRLSEKNPAYVLPALRRHLIQ----LLTYLEQSSADNKCREESAKLLGCLIR 671
V L N +++ ++ Q Y+EQ + AK
Sbjct: 77 EMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------Y 129
Query: 672 NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELM 731
N R ++PY+ + +AL+ L + +I GV G G + +
Sbjct: 130 NVSR-LQPYLK-LRQALL-ELRPAKNV-----LIDGV----------LGSG-KTW----- 165
Query: 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTR 791
+ ++ L K + + L + +P +L+ML
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFWL-----NLKNCNSP--------ETVLEMLQ-------- 203
Query: 792 REVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851
K Q+ + + +S+ I + L S+
Sbjct: 204 ------------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSK 241
Query: 852 DYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC 911
Y N L+ +L + + K + L C K+L + T
Sbjct: 242 PY-----ENCLL-VLLN----VQNAKAW-------NAFNLSC-----KIL------LTTR 273
Query: 912 DDYLKDYITWKLGTLVSIVRQH-----------IRKYL----QEL-----------FSLI 945
+ D+++ T +S+ + KYL Q+L S+I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 946 SELWSSFSLPATNRTYR--GLPVLHLVQQLCL-ALN-DEFRTH------LP--VILPCCI 993
+E AT ++ L + + L L E+R P +P
Sbjct: 334 AESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--T 389
Query: 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEH---MHLLLPALIRLF--KVDAPVDIRRA 1048
+LS + V+ +++ L + +++ + +P++ K++ + R+
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1049 AIETLTRLIPRVQVTGHISS----------LVHHLKLV-LDGKNDELRKDAVD------- 1090
++ IP+ + + + HHLK + + R +D
Sbjct: 449 IVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1091 ------ALCCLAHALG--EDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGS- 1141
A L + + P I + I L + E ++ S
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1142 -TAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQL 1178
T +++ L D +E +A KQ+
Sbjct: 564 YTDLLRIA-----------LMAEDEAIFE---EAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-10
Identities = 90/591 (15%), Positives = 172/591 (29%), Gaps = 188/591 (31%)
Query: 899 KVLPDLFHTVRT---CDDYLK--------DYITWKL---GTLVSIVRQHIRKYLQELFSL 944
K + D+ ++ + D + + W L +V++ + + L+ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKF 93
Query: 945 ISELWSSF----SLPAT------NRTYRGLPVL--------HLVQQLCLALNDEFRTHLP 986
+ + S+ +R Y V +L AL E R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKN 152
Query: 987 VIL---PCC------IQVLSDAE---------------RCNDYTYVLDILHTLEVFGGTL 1022
V++ + V + CN VL++L L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------- 205
Query: 1023 DEHMHLLLPALIRLFKVDAPVDIRR---AAIETLTRLIPRVQVTGHISSLVHHLKLVLDG 1079
++ + P D +I+ + L RL+ + + L LVL
Sbjct: 206 ---LYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKP---YENCL-----LVLLN 252
Query: 1080 KNDELRKDAVDALC---------CLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGR 1130
+ +A + C + L T I H + L E + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL--- 306
Query: 1131 LRRREPLILGSTAAQQLSRRVPVEVIS-DPLNDVDSDPYEDGTDAQKQLRGHQASQRSTK 1189
L + L Q L P EV++ +P +L S R
Sbjct: 307 LLK----YLD-CRPQDL----PREVLTTNPR----------------RLSIIAESIRDGL 341
Query: 1190 EDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHL 1249
W W +H++ + L + + L L+P R++F
Sbjct: 342 ATWDNW-KHVNCDKLTT----IIESS--LNVLEPAEYRKMF------------------- 375
Query: 1250 VQSLEMAF-SSPNIPPEILATL----------LNLAEFM-----EHDEKPLPI---DIRL 1290
L + F S +IP +L+ + + + + E K I I L
Sbjct: 376 -DRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 1291 LGALAEKCRAFAKALHYKEME-FEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI-L 1348
L K ALH ++ + ++ D +++ + H +G L
Sbjct: 434 E--LKVKLEN-EYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSH---IGHHL 481
Query: 1349 TYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMR 1399
+ + L + R+ L+ S A N + TL +++
Sbjct: 482 KNIEHPERMTLFRMVFLDF-RF---LEQKIRHDSTAWNASGSILNTLQQLK 528
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-09
Identities = 97/616 (15%), Positives = 188/616 (30%), Gaps = 174/616 (28%)
Query: 264 VGELLRNTGEFMMSRYREV----AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN 319
V E+LR +F+MS + + + Y+E RDRL + R +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKY--NVSRLQPYLK 139
Query: 320 YLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379
L+ L L R + + + + G+ GK
Sbjct: 140 -LRQA----LLEL-----RPAKNVLIDGVLGS------------------------GKTW 165
Query: 380 LEALACVGNIARAMGPVMEPHVRGLLDIMF--SAGLSTTLVDALEQITVSIPSLLPTIQD 437
+ C+ + + M+ + F + + P + +
Sbjct: 166 VALDVCL---SYKVQCKMDFKI-------FWLNLKNCNS------------PETVLEMLQ 203
Query: 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGH 497
+L Q P T + NI ++ + Q L+ L + +
Sbjct: 204 KL------------LYQIDPNWTSRSDHSSNIKLRIHSI------QAELRRLLKSKPYEN 245
Query: 498 DLLEFARDSVVLYLDD-EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556
LL V L + ++ L C L+ F V+ A+ ++ +
Sbjct: 246 CLL------V---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 557 -LIEELVEKLLIAAVADADVT-----------VRHSIFSSLYGNRGFD--DFLAQADC-- 600
L + V+ LL D R SI + + G D +C
Sbjct: 297 TLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK 354
Query: 601 ----LSAIFAALNDEDFDVREY--AISVAGRLSEKNPAYVLPAL-----RRHLIQLLTYL 649
+ + L ++ R+ +SV S P +L + + ++ ++ L
Sbjct: 355 LTTIIESSLNVLEPAEY--RKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 650 EQSSADNKCREESA-KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGV 708
+ S K +ES + + +L +H+++V ++++ I +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKL--ENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 709 LVTVGDLARVGGFGMRQYI-------------SELMPLIVEALLD-----------GAAV 744
D QY E M L LD A
Sbjct: 470 -----D----------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML---NGELVWSTRREVLKVLGIM 801
++TL Q+ Y+ +Y +L+ +L L L+ S ++L+ + +M
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALM 573
Query: 802 ---GALDPHAHKRNQQ 814
A+ AHK+ Q+
Sbjct: 574 AEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-09
Identities = 70/513 (13%), Positives = 140/513 (27%), Gaps = 178/513 (34%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
S + + +L L +P +R + + + LL+S
Sbjct: 194 SPETVLEMLQKLLYQIDP------------NWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 82 DAAENLGALRAIDELI--DVALGENASKVSKFSNYMRTVFEVKRDREIL-VLASKVLGH- 137
L L+ +V +NA + F+ + + R +++ L++ H
Sbjct: 242 PYENCL--------LVLLNV---QNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHI 289
Query: 138 -LARAGGAMTADEVEFQVKMALDWLRGDRVEYRR-------FAAVLILKEMAENASTVFN 189
L +T DEV+ + L +L + R +I + + + +T
Sbjct: 290 SLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--- 343
Query: 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG 249
W + ++ + + L V+E E R +
Sbjct: 344 ----------WDNWKHVNC---DKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPS-- 384
Query: 250 RNAPVHSIHGSLLAV--GELLRNTGEFMMS---RYREVAE-----------IVLRYLEHR 293
H I LL++ +++++ +++ +Y V + I L
Sbjct: 385 ----AH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 294 DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALD 353
+ L H V +Y IP DS + LD
Sbjct: 440 ENEYAL----------H---RSIVDHY------------NIPKTFDSD----DLIPPYLD 470
Query: 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF---- 409
+ ++ HL+ P R + V LD F
Sbjct: 471 QYFYSHIG---HHLKNIEHPERMT-------------------LFRMV--FLDFRFLEQK 506
Query: 410 ----------SAGLSTTLVDA---LEQITVSIPSLLPTIQDRLL-DCISFVLSKSHYSQA 455
S + TL I + P +RL+ + F+
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-----ERLVNAILDFLP-------- 553
Query: 456 RPAATPIRGNVMNIPQQVSDLNGSAPVQLALQT 488
+ I ++ +++AL
Sbjct: 554 KIEENLICSKYTDL------------LRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 5e-08
Identities = 90/653 (13%), Positives = 167/653 (25%), Gaps = 215/653 (32%)
Query: 112 SNYMRTVFEVKRDREILVLASKV------LGHLARAGGAMTADEVEFQVKMALDWLRGDR 165
+ +++ + I++ V L M VE +++ +L
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-SP 97
Query: 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRACLRV 224
++ + ++ + E ++N F V R + LR L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYND-NQVF----------AKYNVSRLQPYLKLRQALL- 145
Query: 225 IEKRETRWRVQWYYRMF---------EATQD--------------GLGRNAPVHSIHGSL 261
E R + + + + L +S L
Sbjct: 146 -ELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVL 199
Query: 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR-------------I 308
+ +LL SR + I LR + L RL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 309 AHF------L---RDRFVTNYL------KICMNHILTVLRIPAERDSGFIALGEMAGALD 353
F L R + VT++L I ++H L P E
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDE------VK-------- 304
Query: 354 GELF-HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412
L YL L PR N P ++ G
Sbjct: 305 -SLLLKYLDCRPQDL-----PRE--------VLTTN----------PRRLSIIAESIRDG 340
Query: 413 LST------TLVDALEQ-ITVSIPSLLPT-IQDRLLDCISFVLSKSHYSQARPAATPIRG 464
L+T D L I S+ L P + F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----------------PP 383
Query: 465 NVMNIPQQV-----SDLNGSAP----VQLALQTLARFNFKG-----HDL-LEF---ARDS 506
+ +IP + D+ S +L +L K + LE +
Sbjct: 384 SA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 507 VVLY--LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE-ELVE 563
L+ + D + L+ ++ G L E E
Sbjct: 443 YALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFYSHIG-----------HHLKNIEHPE 488
Query: 564 KLLIAAVADADVTVRHSIFSSLYGNRGFD-DFLAQ---ADCLS-AIFAALNDEDFDVREY 618
++ ++F ++ D FL Q D + ++ + ++ Y
Sbjct: 489 RM--------------TLFRMVF----LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 619 AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671
+ + +P Y R + +L +L + + C + + L+R
Sbjct: 531 ----KPYICDNDPKY-----ERLVNAILDFLPKIEENLICSKYT-----DLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 89/625 (14%), Positives = 179/625 (28%), Gaps = 185/625 (29%)
Query: 1071 HHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIF-IPSIHKLLLKHRLRHKEFEEI-- 1127
HH +D + E + D L A ++F + + K L +E + I
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIM 56
Query: 1128 ----EGRLRRREPLIL--GSTAAQQL---SRRVPVEVISDPLNDVDSDP------YEDGT 1172
R +L Q+ R+ + + P+ P Y +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 1173 DAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAA 1232
D R + +Q K ++S + P LR L +L+P + +
Sbjct: 117 D-----RLYNDNQVFAK-------YNVS----RLQPYLKLRQA--LLELRP--AKNVLID 156
Query: 1233 GFVSC---WSQLNATSQKHLVQSLE-----MAFSSPNIPPEILATLLNLAEFMEHDEKPL 1284
G + W L+ + ++ + + N P +L L L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----------- 205
Query: 1285 PIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQL--HQHE 1342
+RS+ + + + L +E
Sbjct: 206 -------------LYQIDPNWT--------SRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1343 AAVGILTYAQKELDVQLKESWYEKLQRWDDAL------------KAYTNKASQASNPHIV 1390
+ +L +VQ ++W +A K T+ S A+ HI
Sbjct: 245 NCLLVLL------NVQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1391 LE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMA 1447
L+ TL + L ++ L+ ++ P L P + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY--LDCRPQD-----LPREVLTTNPRRLSIIAES-----IR 338
Query: 1448 EYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQ 1507
+ ++ D ++ V + ++ES + V +
Sbjct: 339 DGLATWD------------------------NWKHVNCDKLTTIIESS-------LNVLE 367
Query: 1508 LSELEEVIDYCT-LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT 1566
+E ++ D + P + ++I W + K +V V L +L
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLI---WFD---VIKSDVMVVVNKLHKYSL----- 416
Query: 1567 EDVETWLK---------FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV-- 1615
VE K + L K ++V Y+ + ++ PP +
Sbjct: 417 --VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDS-DDLIPPYLDQ 471
Query: 1616 -MYAYLKYQWSLGEDLKRKEAFARL 1639
Y+++ + E +R F +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-04
Identities = 50/379 (13%), Positives = 117/379 (30%), Gaps = 100/379 (26%)
Query: 1510 ELEEVIDYC---TLPVGNPVAEGRRAIIRNMWTERIQGTKRNV----EVWQALLAVRALV 1562
E E Y L V A + N + +Q +++ E+ ++
Sbjct: 10 ETGE-HQYQYKDILSVFED------AFVDNFDCKDVQDMPKSILSKEEI-------DHII 55
Query: 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE--TSHENVRYHGPPQVMYAYL 1620
+ T F +L K + Q + ++L+ + + S P + Y+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 1621 KYQWSLGED--------LKRKEAFARLQTLAMELSSCP--VIQSAAS---TSLTTATSTN 1667
+ + L D + R + + +L+ +EL +I T + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 1668 VPLIAR----VY-LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722
+ + ++ L L + E++ E++ L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNS-------PETVLEML-------------------QKLLY 207
Query: 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW------ 1776
+ ++T R S + +H++ + +K ++ L +L +
Sbjct: 208 Q-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENCL-LVLL--NVQNAKAWN 260
Query: 1777 -FNHGA-----TEEVQIALQKGFA---HVNINTWLVVLPQIIARIHSNNRAVRELIQSLL 1827
FN T Q+ A H++++ + L +++ L++ L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSL--LLKYLD 312
Query: 1828 VRIGQSHPQAL-MYPLLVA 1845
R + L P ++
Sbjct: 313 CRPQDLPREVLTTNPRRLS 331
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 27/233 (11%)
Query: 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFS 953
V L K+ D + + L+ L L++ + L S + ++ +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK-- 67
Query: 954 LPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013
+N + + L L F + +P ++ + V+ L
Sbjct: 68 --DSNVVLVAM-AGKCLALLAKGLAKRFSNYASACVPSLLEKFKE-----KKPNVVTALR 119
Query: 1014 TLEVFGGTLDEHMH-----LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG---- 1064
+D +++ + ++ + R + R Q T
Sbjct: 120 E------AIDAIYASTSLEAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKK 172
Query: 1065 HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED-FTIFIPSIHKLLLK 1116
+ L L L+ + +R + +AL L +G+ T + + L +
Sbjct: 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 28/194 (14%), Positives = 66/194 (34%), Gaps = 19/194 (9%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKR 228
R ++ +L+++ + + N V A+ + +D + + A + L + + KR
Sbjct: 32 RKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91
Query: 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIV 286
+ + + E ++ V LR + + + E +
Sbjct: 92 FSNYASACVPSLLEKFKE-------------KKPNVVTALREAIDAIYASTSLEAQQESI 138
Query: 287 LRYLEHRDRLVRLSITSLLPR-IAHFLRDRFVTNYLKICMNHILTVL--RIPAERDSGFI 343
+ L +++ V+ + R + LK+ ++ L P RDS
Sbjct: 139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAE 198
Query: 344 ALGEMAGALDGELF 357
ALG + + +
Sbjct: 199 ALGTLIKLMGDKAV 212
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 8e-05
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 10/183 (5%)
Query: 608 LNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667
L +R A + G S+ A L ++ L L A + R ++ +
Sbjct: 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150
Query: 668 CLIRNCERLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726
CL+R E + L+ R ++ + + +L
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLM-RAMQ----QQVQKLKVKSAFLLQNLLVGHPEHKGTL 205
Query: 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY----VITPYNEYPQLLGLLLKML 782
S M + AL+ E + L +V P +LL ++L
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265
Query: 783 NGE 785
Sbjct: 266 QQH 268
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1874 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.98 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.93 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.91 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.77 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.74 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.69 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.69 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.67 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.66 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.62 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.6 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.58 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.49 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.43 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.42 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.41 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.4 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.39 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.38 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.35 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.33 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.31 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.29 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.28 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.27 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.27 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.27 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.27 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.26 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.26 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.25 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.22 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.18 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.15 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.14 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.13 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.13 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.11 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.04 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.03 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.96 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.94 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.93 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.89 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.8 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.78 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.75 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.73 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.69 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.6 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.53 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.52 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.47 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.45 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.44 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.44 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.43 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.41 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.36 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.31 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.3 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.3 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.25 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.23 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.21 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.21 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.18 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.13 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.12 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.05 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.99 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.95 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.93 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.92 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.91 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 97.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.84 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 97.77 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.72 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.7 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.63 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.62 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.59 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.53 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.51 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.51 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 97.5 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.49 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.48 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.48 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.42 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.36 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.36 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.28 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 97.24 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.18 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.11 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 97.07 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.0 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 96.52 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.43 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 96.41 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.41 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.38 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 96.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 96.32 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.21 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 96.17 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 96.12 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 96.09 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.06 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 96.06 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 95.89 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 95.78 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.7 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 95.69 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 95.55 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.47 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 95.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 95.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.37 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 95.24 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 95.23 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 95.22 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.21 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 95.2 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 95.19 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 95.02 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 95.02 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.0 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 94.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 94.9 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 94.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 94.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 94.67 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 94.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 94.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 94.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 94.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 94.39 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 94.25 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 94.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 94.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 93.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 93.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 93.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 93.88 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 93.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 93.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 93.54 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 93.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 93.27 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 93.22 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 93.16 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 92.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 92.89 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 92.63 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 92.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 92.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 92.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 92.41 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 92.08 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 91.85 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 91.8 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 91.7 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 91.69 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 91.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 91.35 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 91.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 91.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 91.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 91.12 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 91.08 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 91.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 91.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 90.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 90.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 90.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 90.56 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 90.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 90.43 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 90.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 90.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 90.25 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 90.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 90.18 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 90.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 90.06 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 90.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 89.92 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 89.82 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 89.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 89.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 89.69 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 89.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 89.31 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 89.01 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 88.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 88.92 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 88.62 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 88.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 88.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 88.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 88.15 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 88.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 87.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 87.63 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 87.47 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 87.33 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 87.24 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 87.17 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 87.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 87.07 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 86.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 86.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 86.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 86.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 86.07 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 86.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 86.05 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 85.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 85.45 | |
| 2b6c_A | 220 | Hypothetical protein EF3068; structural genomis, D | 85.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 85.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 84.57 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 84.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 84.09 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 83.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 83.84 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 83.66 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 83.08 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 82.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 82.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 82.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 82.08 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 82.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 81.78 | |
| 3jxy_A | 232 | Alkylpurine DNA glycosylase ALKD; heat repeat, DNA | 81.64 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 81.6 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 81.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 80.28 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 80.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 80.03 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=400.42 Aligned_cols=932 Identities=13% Similarity=0.136 Sum_probs=600.6
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
+...|.++. +.|.++|..|...|....... ....++.....++.++++|. +.++..|.+|+.+|+.++++++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH---
Confidence 445566654 468999999998888765543 22233456677888888886 56788999999999999998876
Q ss_pred hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1874)
++++.+++.++.++.|+++.||.+|+.+++.+...+.... ......+...++|.+..++.+..+++++++|+.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887665321 11344577889999999998533588999999999999
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcchHHHH
Q 000196 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERDSGFIA 344 (1874)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~R~~a~~a 344 (1874)
++..++.+.+++++++..++..+.++++.||..++.+++.++...++.| ++.+|+.++..|.+ ...|..++.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 9877777888999999999999999999999999999999998877665 34566666666643 2468899999
Q ss_pred HHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC-CHHHH-H-H-
Q 000196 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL-STTLV-D-A- 420 (1874)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~l-s~~l~-~-~- 420 (1874)
+|.++..+|+.+.||++.+++.+...+.+.+...+..++.+++.+++.+|+.+.||++.+++.++..-. ++... + .
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccc
Confidence 999999999999999999999999999876666677899999999999999999999999999986421 21110 0 0
Q ss_pred -----HH------HHH---HhC---CCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCccCCCccccccCCchh
Q 000196 421 -----LE------QIT---VSI---PSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPIRGNVMNIPQQVSDLNGSAP 481 (1874)
Q Consensus 421 -----l~------~i~---~~~---p~l~~~i~~~ll~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1874)
.. +.. +.+ ......++....+.+..+.. ++.+.+..+. .. +.... ...+. +...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~--l~-~~l~~---~l~d~-~~~V 390 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT--VS-PALIS---RFKER-EENV 390 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT--TH-HHHHS---TTSCS-SSHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHH--HH-HHHHH---HcCCC-chHH
Confidence 00 000 000 00011222222233322221 1000000000 00 00000 00111 2223
Q ss_pred HHHHHHhhcccc--cC----------------C--Cc---chhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCc
Q 000196 482 VQLALQTLARFN--FK----------------G--HD---LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538 (1874)
Q Consensus 482 ~~~Al~~L~~~~--f~----------------~--~~---l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~ 538 (1874)
...|+++++.+- .. | .. +.+.+-..+...+.++++.+|.++...++.++......
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-- 468 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-- 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--
Confidence 345666555431 00 0 01 11222233445578889999988888877776532211
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHhcCCCh--hHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCC
Q 000196 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALND 610 (1874)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR~~~l~~l~~------~~~f~~~L~~~~~l~~L~~~l~D 610 (1874)
..+.+..+++.++.. +.|+.+ .+|..++..+.. ...|.+|+ +.+++.++.+++|
T Consensus 469 ---------------l~~~l~~ll~~l~~~-L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~L~~~l~d 530 (1230)
T 1u6g_C 469 ---------------LTQHIPVLVPGIIFS-LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPPVVACVGD 530 (1230)
T ss_dssp ---------------TGGGHHHHHHHHHHH-TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHHHHHHHTC
T ss_pred ---------------hHHHHHHHHHHHHHH-HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHHHHHHHcc
Confidence 123356666666654 567654 888887776631 12244455 3578999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCc-------CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 611 EDFDVREYAISVAGRLSEKNP-------AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p-------~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
.++.||..|+.+++.+++..+ ..+.|++..++..++..+...+.+...|+.|+.+++.++...++.+.+|++.
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~ 610 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN 610 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH
Confidence 999999999999999886533 2567888887777777774322567889999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-ccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
+++.+.+.+.++ ..+.+++.+++.++... +.++.+++.+++|.+...+.+. +...|.+|+.+++.++...+
T Consensus 611 ~l~~L~~~l~~e-------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 611 TLQIFLERLKNE-------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTSS-------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccc-------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccc
Confidence 999999988753 35667788888887643 3467899999999999999876 57899999999999999887
Q ss_pred ccccccccchHHHHHHH---HHhcCCCCHHHHHHHHHHHHHhcccCccch-----hhhcc----cCCC--cccc------
Q 000196 763 YVITPYNEYPQLLGLLL---KMLNGELVWSTRREVLKVLGIMGALDPHAH-----KRNQQ----LSGS--HGEV------ 822 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll---~~l~~~~~~~vr~~al~~lg~lgaldp~~~-----~~~~~----~~~~--~~~~------ 822 (1874)
..+. .+.+.+.+. .++. +.+..++..++.+++.+-.-.|-.. ..... +... .+..
T Consensus 683 ~~~~----~~~v~~~l~~ll~ll~-~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~ 757 (1230)
T 1u6g_C 683 DSLT----AAMIDAVLDELPPLIS-ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 757 (1230)
T ss_dssp TTCC----HHHHHHHHTTCGGGSC-TTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccCC----HHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHH
Confidence 5441 123444443 3332 4467788888888887643222110 00000 0000 0000
Q ss_pred -cccCCCCCCCCCCccccccccCCC--CCCC---c-cchH--HHHHHHHHHHc---------------cCC-CchhhHHH
Q 000196 823 -TRAASDSGQHIQPMDEFPMDLWPS--FATS---E-DYYS--TVAINSLMRIL---------------RDP-SLASYHQK 877 (1874)
Q Consensus 823 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~-~~~~--~~vi~~Ll~iL---------------~d~-s~~~~~~~ 877 (1874)
.+.......+....+.+...+... .+.. . +.+. ...+..+.... +++ .....+..
T Consensus 758 ~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1230)
T 1u6g_C 758 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLL 837 (1230)
T ss_dssp HHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHH
Confidence 000000000000001000011000 0000 0 0000 01122222111 111 11111112
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcc
Q 000196 878 VVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPAT 957 (1874)
Q Consensus 878 v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~ 957 (1874)
++.++..+-... ...+ .+++.+.++..+.+.++.+|..+..++|.++ ..++..|+|.++..+..- . +
T Consensus 838 ~l~~l~~~g~~~--~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~---~~~~~~~lp~ll~~l~~~----~--~- 904 (1230)
T 1u6g_C 838 ALLSLGEVGHHI--DLSG-QLELKSVILEAFSSPSEEVKSAASYALGSIS---VGNLPEYLPFVLQEITSQ----P--K- 904 (1230)
T ss_dssp HHHHHHHHHHHS--CCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHSC----G--G-
T ss_pred HHHHHHHhcccC--CCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHh---ccCHHHHHHHHHHHHhcc----c--h-
Confidence 222223322211 1222 4677888888888888889998888888876 345667777776666421 1 0
Q ss_pred cccccchhHHHHHHHHHHHh-hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHh
Q 000196 958 NRTYRGLPVLHLVQQLCLAL-NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRL 1036 (1874)
Q Consensus 958 ~~~~~~~~~l~~i~~l~~~l-~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~ 1036 (1874)
.+...+..+..+.... ++.+.||.+.+++.+++.+++.+. .-+..+..+++.+.... -..++|.+.+.
T Consensus 905 ----~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~-~~r~~~a~~lg~l~~~~------~~~l~p~l~~~ 973 (1230)
T 1u6g_C 905 ----RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE-GTRNVVAECLGKLTLID------PETLLPRLKGY 973 (1230)
T ss_dssp ----GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHHHHHHHHHHSS------GGGTHHHHTTT
T ss_pred ----hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch-hhHHHHHHHHhhhhccC------hHHHHHHHHHH
Confidence 1223455554444333 567999999999999998865331 12334444444443321 14578888888
Q ss_pred hcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHH
Q 000196 1037 FKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1874)
Q Consensus 1037 ~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l 1114 (1874)
+..+ +..+|..++.+++.+... ..+.+|+..++++++..+++++.++|++|+.+|+.++...|..+.++++.+.+.+
T Consensus 974 l~~~-~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l 1052 (1230)
T 1u6g_C 974 LISG-SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1052 (1230)
T ss_dssp SSSS-CHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 7654 466899999998888654 2344678888888889999989999999999999999998888888998888887
Q ss_pred HhC
Q 000196 1115 LKH 1117 (1874)
Q Consensus 1115 ~~~ 1117 (1874)
...
T Consensus 1053 ~~~ 1055 (1230)
T 1u6g_C 1053 YNE 1055 (1230)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=378.08 Aligned_cols=758 Identities=12% Similarity=0.146 Sum_probs=534.0
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
+...|..|-..|.++.. .| .....+-.|+..+.+.++.||..|+-.|+..+. .+........-..+-+.+.
T Consensus 26 d~~~r~~Ae~~L~~~~~-~p-----~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~---~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 26 DTTIQRTVQQKLEQLNQ-YP-----DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp CHHHHHHHHHHHHHHTT-SH-----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT---TSGGGCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CC-----CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHH
Confidence 44567777777776532 22 222333444455578889999999998887653 1222122223345556666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHH----HH
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN----YL 321 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~----yl 321 (1874)
..+.+++ ..+|+.+..+++.++...+. ....++++.++..+++.++.+|+.++.+++.++...+..|... ++
T Consensus 97 ~~l~~~~-~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 97 NNIGDSS-PLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp TTTTCSS-HHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 7777664 67899999999999875321 1234466677777888899999999999999998766655432 36
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchH
Q 000196 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399 (1874)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p 399 (1874)
+.+++.++..++++. .|..|+.+++.++...+..+.++++.+++.+...+.+.+.+++..++.|++.+++..++.+.|
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 778888888887654 588999999988776666677788889988888887655555668999999999987777777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000196 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1874)
Q Consensus 400 ~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1874)
|++.+++.++..
T Consensus 253 ~l~~l~~~l~~~-------------------------------------------------------------------- 264 (852)
T 4fdd_A 253 HMHNIVEYMLQR-------------------------------------------------------------------- 264 (852)
T ss_dssp GHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 877766654421
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH
Q 000196 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1874)
Q Consensus 480 ~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1874)
+.++++.||..|...+..+..... + .....+.+.
T Consensus 265 -------------------------------~~~~~~~vr~~a~e~l~~l~~~~~--~-------------~~~~~~~~~ 298 (852)
T 4fdd_A 265 -------------------------------TQDQDENVALEACEFWLTLAEQPI--C-------------KDVLVRHLP 298 (852)
T ss_dssp -------------------------------HTCSSHHHHHHHHHHHHHHTTSTT--H-------------HHHHTTTHH
T ss_pred -------------------------------ccCCcHHHHHHHHHHHHHHhcchh--H-------------HHHHHHHHH
Confidence 011122333333222222211000 0 000011233
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC--CCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND--EDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D--~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
.+++.++... ..++.++. . +..+...|.. + .| .+..||.+|..+++.++...|..+.|.
T Consensus 299 ~l~p~ll~~l-~~~e~d~~--~---~~~d~~ed~~----~---------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~ 359 (852)
T 4fdd_A 299 KLIPVLVNGM-KYSDIDII--L---LKGDVEGGSG----G---------DDTISDWNLRKCSAAALDVLANVYRDELLPH 359 (852)
T ss_dssp HHHHHHHHHT-SCCHHHHH--H---HHC-------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHc-CCcHhHHH--H---hcCCcccccc----c---------ccccccchHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444333321 11211111 0 0000000000 0 01 456799999999999999988776665
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1874)
+.+.+.+ +..+ .+++.|+.|+.+|+.+++.+++.+.||++.+++.+++.+.|+ ++.|+.+++.++|.++.
T Consensus 360 l~~~l~~----~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLLKE----LLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-----KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHH----HHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHH----HhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 5444433 3344 579999999999999999999888999999999999999875 88999999999999998
Q ss_pred hcc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 718 VGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 718 ~~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+ ....+|+..++|.++..+.|. +..+|..|+++|+.+++..+..+.||. |.+++.|+..++..+ .+....++.
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~-~~~~~~~~~ 505 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQ-HKNLLILYD 505 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 665 357889999999999999986 678999999999999999998888875 899999999997553 344445566
Q ss_pred HHHHhcc-cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHH---HccCCCch
Q 000196 797 VLGIMGA-LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR---ILRDPSLA 872 (1874)
Q Consensus 797 ~lg~lga-ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~---iL~d~s~~ 872 (1874)
++|.+.. +.+. ....+|+ ..+++.|+. .+.|++..
T Consensus 506 ai~~l~~~~~~~----------------------------------------~~~~~~~-~~l~p~l~~~~~~l~d~~~~ 544 (852)
T 4fdd_A 506 AIGTLADSVGHH----------------------------------------LNKPEYI-QMLMPPLIQKWNMLKDEDKD 544 (852)
T ss_dssp HHHHHHHHHGGG----------------------------------------GCCHHHH-HHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHHhhhh----------------------------------------hccHHHH-HHHHHHHHHHHHhcccccHH
Confidence 6665531 0000 0112344 466777774 45555432
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcC-----------------CcchhHHHHHHHHHHHHHHHHhHH
Q 000196 873 SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----------------DDYLKDYITWKLGTLVSIVRQHIR 935 (1874)
Q Consensus 873 ~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~-----------------~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1874)
. ..+++++..+...+|..+.||++.+++.++..+++. +...+..++..++.++..+|.++.
T Consensus 545 -~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 545 -L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp -H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred -H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 3 378999999999999999999999999888887642 233667778999999999999999
Q ss_pred HhH--HHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHH
Q 000196 936 KYL--QELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013 (1874)
Q Consensus 936 ~y~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~ 1013 (1874)
+|+ +.+++.+.+.++... + .+++ .++.+++.++...+.+|.+|++.++|.+++.+.+.+ ..-+..+..+++
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~---~--~vr~-~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~-~~v~~~a~~alg 695 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKM---P--EVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF-ISVCNNATWAIG 695 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSS---H--HHHH-HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS-HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHhCCCC---h--hHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccc-hHHHHHHHHHHH
Confidence 998 899999999886543 1 2233 788899999999999999999999999999995422 111223333344
Q ss_pred HH-HHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccc--cccchhHhHHHHHHHHhCC-CCHHHHHHH
Q 000196 1014 TL-EVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLDG-KNDELRKDA 1088 (1874)
Q Consensus 1014 ~l-~~~g~~~~~~~~~ilp~l~~~~~~~-~~~~vr~~ai~~l~~l~~~~--~~~~~~~~ii~~l~~~l~~-~~~~l~~~a 1088 (1874)
.+ ..+|+.+.+|++.++|.++++++.. .+..+++.|+.++|+|+... .+.||++.+++++++.|.. .+.+.|..+
T Consensus 696 ~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a 775 (852)
T 4fdd_A 696 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSA 775 (852)
T ss_dssp HHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHH
Confidence 33 4478889999999999999999753 56789999999999998862 3568999999999999964 567889999
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHHhc
Q 000196 1089 VDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR 1133 (1874)
Q Consensus 1089 l~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~~~ 1133 (1874)
+..||.++.+-+......+..+...+.......++......++..
T Consensus 776 ~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 776 FRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999988878788888888877765445555555555543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=364.77 Aligned_cols=779 Identities=14% Similarity=0.109 Sum_probs=532.1
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHhh-cch
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD--PTLAVRERAVEALRACLRVIEK-RET 230 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D--~~~~VR~aA~~al~~~~~~i~~-r~~ 230 (1874)
+..+++++.+... ..|..|...|+++.+. +.+.+++.++..+.+ +++.||..|+.+|+.++..... ++.
T Consensus 3 l~~~L~~~~s~d~-~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (876)
T 1qgr_A 3 LITILEKTVSPDR-LELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (876)
T ss_dssp HHHHHHGGGCSCH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHH
Confidence 4457777765444 4566666677876643 456788888888877 4689999999999987632100 111
Q ss_pred hhHHHHH-------HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc--hhHHHHHH
Q 000196 231 RWRVQWY-------YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR--DRLVRLSI 301 (1874)
Q Consensus 231 ~~~~~~~-------~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~--~~~vr~~~ 301 (1874)
.....|. ..+-+.+..++.+++ ..+ ++++.+++.++...+ ...+.+++++.++..+++. ++.+|..+
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~-~~~-~~~~~~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET-YRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC-SSS-CHHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc-HHH-HHHHHHHHHHHHhhC--cccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122332 234445666776654 355 888889999887431 1234556777788888888 89999999
Q ss_pred HHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hHHHHHHHHHhhcCC
Q 000196 302 TSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPR 374 (1874)
Q Consensus 302 ~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~L~~~ 374 (1874)
+.+++.++... ++.| ..+++.+++.+...+.++ ..|..|+.+++.++..++..+... .+.+++.+.+.+.+.
T Consensus 151 l~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 229 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (876)
T ss_dssp HHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 99999998754 4433 458899999999999765 247899999999988777654322 234777777776544
Q ss_pred CCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCC
Q 000196 375 RGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYS 453 (1874)
Q Consensus 375 ~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~ 453 (1874)
+.+.+..++.|++.++...++.+.||+. .+++.++....++
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------------- 271 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-------------------------------------- 271 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Confidence 4344567999999999999888999998 7777765321000
Q ss_pred CCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 454 QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++.....|++.+..+.- ...+.. .+ +.+ +. .. ...
T Consensus 272 ------------------------~~~v~~~al~~l~~l~~-------~~~~~~---~~--~~~----~~---~~--~~~ 306 (876)
T 1qgr_A 272 ------------------------IDEVALQGIEFWSNVCD-------EEMDLA---IE--ASE----AA---EQ--GRP 306 (876)
T ss_dssp ------------------------SHHHHHHHHHHHHHHHH-------HHHHHH---HH--HHH----HH---HH--SSC
T ss_pred ------------------------chHHHHHHHHHHHHHHH-------HHHhHh---hh--hcc----cc---cc--CCC
Confidence 11112233333332200 000000 00 000 00 00 000
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHHHhc------CCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHH
Q 000196 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA------DADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFA 606 (1874)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~------d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~ 606 (1874)
+.. .........+..+++.++..... |.++.+|.++..+|..- ..+.... -+.+++.+..
T Consensus 307 ~~~------------~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~ 373 (876)
T 1qgr_A 307 PEH------------TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKE 373 (876)
T ss_dssp CSS------------CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHH
T ss_pred ccc------------hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HHHHHHHHHH
Confidence 000 00001122345555555554322 45678999887777410 0011111 2356777778
Q ss_pred HhCCCCHHHHHHHHHHHHhhhcCCc-CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc--cccchHH
Q 000196 607 ALNDEDFDVREYAISVAGRLSEKNP-AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL--IRPYIAP 683 (1874)
Q Consensus 607 ~l~D~~~~VR~~a~~~l~~l~~~~p-~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~--~~py~~~ 683 (1874)
.++|+++.+|.+|+.++|.++...+ ..+.|++..++..++..+.+ ..+..|..|+++++.+++..+.. ..+|++.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence 8899999999999999999998765 44556666655555555543 57889999999999999988765 4699999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc--------------cchhhcHHhHHHHHHHHHhcCc--chhhH
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--------------FGMRQYISELMPLIVEALLDGA--AVTKR 747 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--------------~~~~~~~~~llp~l~~~l~d~~--~~~~r 747 (1874)
+++.++..+.+ .+.++..++.+++.++...+ ..+.||++.++|.++..+.+.. +...|
T Consensus 452 ~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 452 LLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 99999999875 37788999999999988755 4589999999999999998642 34688
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC----------CCC----HHHHHHHHHHHHHhcccCc-cchhhh
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG----------ELV----WSTRREVLKVLGIMGALDP-HAHKRN 812 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~----------~~~----~~vr~~al~~lg~lgaldp-~~~~~~ 812 (1874)
..++.+++.++...|....+|. +.+++.++..+.. +.+ +.+|..++.+++.+...-+ .
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~----- 598 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAV--QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ----- 598 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHH--HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH-----
T ss_pred HHHHHHHHHHHHHCchhhHHHH--HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh-----
Confidence 8999999999999887555543 4666666665542 112 4567777777776531100 0
Q ss_pred cccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCC
Q 000196 813 QQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGL 891 (1874)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~ 891 (1874)
+ .. -|...+++.|+.++++++. ...+..++.++..++...|.
T Consensus 599 -----------------------------~-------~~-~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~ 641 (876)
T 1qgr_A 599 -----------------------------D-------AL-QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG 641 (876)
T ss_dssp -----------------------------H-------HH-TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG
T ss_pred -----------------------------h-------hh-HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh
Confidence 0 00 1346688889999987631 24577899999999999999
Q ss_pred CCCCCccchhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000196 892 GCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1874)
Q Consensus 892 ~~~~~l~~ilp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1874)
.+.||++.++|.++..+++. ++.+|..++..++.++..++.++.||++.+++.+.+.+...+... + ....++.++
T Consensus 642 ~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~---~-~~~~~~~~l 717 (876)
T 1qgr_A 642 EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHR---S-VKPQILSVF 717 (876)
T ss_dssp GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCG---G-GHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccH---H-hhHHHHHHH
Confidence 99999999999999999987 778999999999999999999999999999999999997632111 1 234788999
Q ss_pred HHHHHHhhhhhhccchhhHHHHHHhcccccccCc-------hhhHHHHHHHHH----HHhc----------chhhhhhhh
Q 000196 971 QQLCLALNDEFRTHLPVILPCCIQVLSDAERCND-------YTYVLDILHTLE----VFGG----------TLDEHMHLL 1029 (1874)
Q Consensus 971 ~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~-------~~~~~~il~~l~----~~g~----------~~~~~~~~i 1029 (1874)
+.++..+|.+|.+|++.++|.+++.+.......+ ......++.++. .+|. .+.+|++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 9999999999999999999999998863210001 122233444443 3443 355677777
Q ss_pred HHHHHHhhcCCC-cHHHHHHHHHHHHhhcccc---cccch-hHhHHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Q 000196 1030 LPALIRLFKVDA-PVDIRRAAIETLTRLIPRV---QVTGH-ISSLVHHLKL-VLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1030 lp~l~~~~~~~~-~~~vr~~ai~~l~~l~~~~---~~~~~-~~~ii~~l~~-~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
++.+........ +..+|..|+.+||.++... .+.+| .+.+++++++ .+.++++++|..|..+++.+..
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 766666554433 6899999999999998864 45677 6788999998 9988899999999999998874
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=361.89 Aligned_cols=758 Identities=13% Similarity=0.158 Sum_probs=532.5
Q ss_pred HHHHHHHhh-cccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhh----
Q 000196 110 KFSNYMRTV-FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAEN---- 183 (1874)
Q Consensus 110 ~~~~~L~~~-l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~~---- 183 (1874)
.+...|... +. .|.++++.|.+.|..+... ..+++.. .+++.+.++ .+...|+.|...|+.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~---~~~~~~~----~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSND---NFLQFAG----LSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHH---CHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhh---CHHHHHH----HHHHHHhCCCCChHHHHHHHHHHHhhccCcChH
Confidence 455667676 63 4899999999999887652 1233433 344444433 4567888888888876422
Q ss_pred --------cCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh
Q 000196 184 --------AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1874)
Q Consensus 184 --------~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~ 254 (1874)
.+. .=......|.+.++..|.++++.||..++.+++.+..... + ...| ..+++.+...+.++.+.
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p--~~~w-~~ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---P--HGAW-PELMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---G--GTCC-HHHHHHHHHHTSTTSCH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---c--cccc-HHHHHHHHHHHhcCCCH
Confidence 111 1123455677888899999999999999999988765421 1 0123 45777777777765246
Q ss_pred hHHHHHHHHHHHHHHcchhh---hHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHH-HHHHHHHHHHH
Q 000196 255 HSIHGSLLAVGELLRNTGEF---MMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHI 328 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~---~~~~~~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~-~~yl~~~~~~L 328 (1874)
.++++++.+++.+.+..+.. +.++...++..++..+.+. ++.||.+++.++..+..+....+. ..+.+.+++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 88999999999999843322 5677888888888888876 789999999999988766554332 11234466666
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhH-HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHH
Q 000196 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLL 405 (1874)
Q Consensus 329 l~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll 405 (1874)
...+..+. .|..|+.+++.++...++.+.+|++ .+++.+...+.+...+.+..++++|+.+++... +..
T Consensus 230 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~--- 301 (861)
T 2bpt_A 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEI-----DIA--- 301 (861)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH-----HHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----hhh---
Confidence 66665443 5789999999999998888889998 888888877765433333456666665554310 000
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000196 406 DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1874)
Q Consensus 406 ~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1874)
.. .. . +
T Consensus 302 --~~---------------------------~~-----~---------------------------------~------- 307 (861)
T 2bpt_A 302 --YE---------------------------LA-----Q---------------------------------F------- 307 (861)
T ss_dssp --HH---------------------------HH-----H---------------------------------C-------
T ss_pred --hh---------------------------hh-----h---------------------------------c-------
Confidence 00 00 0 0
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHH
Q 000196 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1874)
Q Consensus 486 l~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1874)
+.. +. . .++ . ....+..+++.+
T Consensus 308 ----~~~---~~-------------~-~~~-~------------------------------------~~~~~~~il~~l 329 (861)
T 2bpt_A 308 ----PQS---PL-------------Q-SYN-F------------------------------------ALSSIKDVVPNL 329 (861)
T ss_dssp ----TTC---SC-------------C-CCC-H------------------------------------HHHHHHHHHHHH
T ss_pred ----cCC---ch-------------h-hHH-H------------------------------------HHHHHHHHHHHH
Confidence 000 00 0 000 0 001122233323
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHH
Q 000196 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1874)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1874)
+.. +.+++ . +. .|+++.+|..+..+++.++...|..+.|.+.+.+.+.
T Consensus 330 l~~-l~~~~--------------~--d~---------------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 330 LNL-LTRQN--------------E--DP---------------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377 (861)
T ss_dssp HHH-TTCCC--------------C--C----------------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHH-HHhcc--------------c--cc---------------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 221 11110 0 00 1334577778888888877776655555444333322
Q ss_pred HHHHhhCCCChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccch-
Q 000196 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM- 723 (1874)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~- 723 (1874)
..+ .+++.|+.|+.+++.+++.++ ..+.+|++.+++.+++.+.++ ++.|+.+++.++|.++...+..+
T Consensus 378 ----l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 378 ----ITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp ----TTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred ----cCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHhhhhcC
Confidence 233 567888888888888887764 667888899999999998875 78899999999999999887655
Q ss_pred -hhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc----ccccccccchHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 000196 724 -RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG----YVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKV 797 (1874)
Q Consensus 724 -~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~----~~i~p~~~~p~ll~~Ll~~l~~~~-~~~vr~~al~~ 797 (1874)
.+|++.++|.++..+.|. ..+|..|+++|+.+++..+ ..+.||. |.+++.|+..+++.. ++.+|..++++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 679999999999999874 7899999999999999876 4466764 789999999997533 37899999999
Q ss_pred HHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccC---------
Q 000196 798 LGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--------- 868 (1874)
Q Consensus 798 lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d--------- 868 (1874)
+|.+....+.. ...| ...+++.++..|.+
T Consensus 524 l~~l~~~~~~~-----------------------------------------~~~~-~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 524 LTTMVEYATDT-----------------------------------------VAET-SASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHHHHHCCGG-----------------------------------------GHHH-HHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHcchh-----------------------------------------hHHH-HHHHHHHHHHHHHHHHhhhcccC
Confidence 99876422210 0011 12233333333321
Q ss_pred -----CCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000196 869 -----PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQELF 942 (1874)
Q Consensus 869 -----~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~~i~~y~~~i~ 942 (1874)
......+..+++++..+++.+|..+.||++.++|.++..++..+. .+++.++..++.++...+.++.||++.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112235567899999999999998899999999999999998876 89999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccc-cCchhhHHHHHHHHH-HHhc
Q 000196 943 SLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAER-CNDYTYVLDILHTLE-VFGG 1020 (1874)
Q Consensus 943 ~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~-~~~~~~~~~il~~l~-~~g~ 1020 (1874)
+.+.+.++..+ + . ....++.+++.++..+++.|.||++.++|.+++.+++.+. ..-+..+..++..+. .+|.
T Consensus 642 ~~l~~~l~~~~-~----~-vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 642 PYLLKALNQVD-S----P-VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHCTT-S----H-HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhcccc-H----H-HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 99999986433 1 1 2236788999999999999999999999999999975321 111333334444333 4688
Q ss_pred chhhhhhhhHHHHHHhhcCCC----------cHHHHHHHHHHHHhhccccc-----ccchhHhHHHHHHHHhCCC----C
Q 000196 1021 TLDEHMHLLLPALIRLFKVDA----------PVDIRRAAIETLTRLIPRVQ-----VTGHISSLVHHLKLVLDGK----N 1081 (1874)
Q Consensus 1021 ~~~~~~~~ilp~l~~~~~~~~----------~~~vr~~ai~~l~~l~~~~~-----~~~~~~~ii~~l~~~l~~~----~ 1081 (1874)
.+.+|+..++|.+.+.+.... ...+|..++++++.++.... +.+|++.+++.+.+.+.+. +
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 899999999999999886421 14689999999999987654 7889999999999988653 7
Q ss_pred HHHHHHHHHHHHHHHHHh-ccccccchh-hHHHHHHh
Q 000196 1082 DELRKDAVDALCCLAHAL-GEDFTIFIP-SIHKLLLK 1116 (1874)
Q Consensus 1082 ~~l~~~al~~L~~l~~~~-g~~f~~~ip-~i~~~l~~ 1116 (1874)
.++|..|+.+|+.++..+ |.+|.+|++ .+.+.+.+
T Consensus 796 ~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHH
Confidence 789999999999999999 999999998 77777665
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=376.62 Aligned_cols=959 Identities=14% Similarity=0.145 Sum_probs=615.9
Q ss_pred HHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChH-----HHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHh
Q 000196 24 DALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGE-----AFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDEL 96 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~-----~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~l 96 (1874)
.++..+++.|.+.....|. |+..|..++. .+.++ ....+++++.+.+.+.++ ++++..|.+|+.++..+
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIG----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHH----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 4555666666665554443 5666665553 33332 245678888888888887 58899999999999999
Q ss_pred hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHH
Q 000196 97 IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLI 176 (1874)
Q Consensus 97 i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~ 176 (1874)
+...+....+....+.+.+...+. ..+..|++.|..+++.++...+. ++++..++.+++.|..+.++..|.+|+.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 865322233455666777777775 45789999999999999986332 23344455566666544335678889999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccC------
Q 000196 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGR------ 250 (1874)
Q Consensus 177 l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~------ 250 (1874)
++.++...|..|.+|++.+++.++..+.|+++.||+.|..+++.+...... ....++..+++.+...+..
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~l~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK----EVYPHVSTIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC----CCHHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH----HHHHhHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999988765431 1123556666666554421
Q ss_pred ------------------------------CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHH
Q 000196 251 ------------------------------NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300 (1874)
Q Consensus 251 ------------------------------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~ 300 (1874)
...|++|.+|+.+++.+....++.+.+++.+++..++..+.++++.||.+
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 01367899999999999987777788999999998888888899999999
Q ss_pred HHHHhHhHhhhC------------------hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh
Q 000196 301 ITSLLPRIAHFL------------------RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL 360 (1874)
Q Consensus 301 ~~~~i~~la~~~------------------~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l 360 (1874)
++.+++.+.... +....+.+++.+++.+...++++. .|..++.++|.++...+..+.+|+
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 999988776532 123345677888888888887654 578899999999998877788999
Q ss_pred HHHHHHHHHhhcCCCC--CCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHhcC--CCHH----HHHHHHHHHHhCCC-
Q 000196 361 PTITSHLREAIAPRRG--KPSLEALACVGNIARAMGPV-MEPHVRGLLDIMFSAG--LSTT----LVDALEQITVSIPS- 430 (1874)
Q Consensus 361 ~~i~~~l~~~L~~~~~--~~~~~a~~~l~~l~~~~g~~-~~p~l~~ll~~ll~~~--ls~~----l~~~l~~i~~~~p~- 430 (1874)
+.+++.+...+.+... ..+..++.+++.+....|+. |.||++.++|.++.+- -+.. ...++..+++.+.+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999977653 23457888888888888875 9999999999988642 2222 23345555555432
Q ss_pred ------ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhhH
Q 000196 431 ------LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEFA 503 (1874)
Q Consensus 431 ------l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~~~~l~~~v 503 (1874)
-.....+.++..+...+... ..+.+....|+.++|.+ ...|..+.+++
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~-------------------------d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAA-------------------------DIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCS-------------------------SSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhcc-------------------------CCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 11222334444433222110 01223445677777776 22244455555
Q ss_pred HHHHhhhcc-CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 504 RDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 504 ~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
..++..+.+ -.++.+|..++.++..+...... ......+..+++.|.. .+.++++.+|..++
T Consensus 609 ~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~----------------~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a~ 671 (1230)
T 1u6g_C 609 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLK----------------IDLRPVLGEGVPILAS-FLRKNQRALKLGTL 671 (1230)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC----------------CCCHHHHHHHHHHHHH-HTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhCccc----------------cchHHHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence 554432222 12456888888888776542110 0134567777776655 56789999999998
Q ss_pred HhccCC-CCcchhhccHhhHHHH---HHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCC-ChH
Q 000196 583 SSLYGN-RGFDDFLAQADCLSAI---FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA-DNK 657 (1874)
Q Consensus 583 ~~l~~~-~~f~~~L~~~~~l~~L---~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~-~~~ 657 (1874)
.+++.- ......+....+.+.+ ...++|++.+++..++.+|+.+.+.+|..+.+++..++..++..+... . ...
T Consensus 672 ~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 750 (1230)
T 1u6g_C 672 SALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP-LLQGG 750 (1230)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT-TCCHH
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc-ccchH
Confidence 888510 0000001112222222 234578899999999999999999998776555555555555444433 1 111
Q ss_pred hHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA 737 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~ 737 (1874)
.......++..++...+. .+.++.+++.++..+..+........+...+..++|.+....|+... .+++.++..
T Consensus 751 ~~~~l~~~~~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~ 824 (1230)
T 1u6g_C 751 ALSAMLDFFQALVVTGTN--NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP----AVVGQFIQD 824 (1230)
T ss_dssp HHHHHHHHHHHHHTTCCT--TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH----HHHTTTTTT
T ss_pred HHHHHHHHHHHHHhcCCC--CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH----HHHHHHHHH
Confidence 111111222233332211 34667777777654432110001334566778899999888777654 344445555
Q ss_pred HhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccC
Q 000196 738 LLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 738 l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~ 816 (1874)
+++. .+...+..++.++|.+....+ +.+ +|++.+.+...+.+. ++.||.+|..++|.++.-.
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~---~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~----------- 887 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHID--LSG---QLELKSVILEAFSSP-SEEVKSAASYALGSISVGN----------- 887 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSC--CCS---CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT-----------
T ss_pred hCCCCccHHHHHHHHHHHHHhcccCC--Ccc---cccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC-----------
Confidence 5432 244567788888888754322 222 478999999999765 8999999999999875200
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhC-CCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG-LGCVP 895 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~-~~~~~ 895 (1874)
....++.+++.+.+. ........+++..++...+ ....|
T Consensus 888 --------------------------------------~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~ 927 (1230)
T 1u6g_C 888 --------------------------------------LPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKP 927 (1230)
T ss_dssp --------------------------------------HHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHH
T ss_pred --------------------------------------HHHHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHh
Confidence 012344555555443 2334567788888887653 34457
Q ss_pred CccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH
Q 000196 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL 975 (1874)
Q Consensus 896 ~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~ 975 (1874)
|.++|.+.++..+...+...|..+...+|.++.... ..++| .+.+.+...+ +.....++.++..+..
T Consensus 928 ~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p----~l~~~l~~~~------~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 928 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLP----RLKGYLISGS------SYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHH----HHTTTSSSSC------HHHHHHHHHHTGGGCC
T ss_pred hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHH----HHHHHhcCCC------HHHHHHHHHHHHHHHc
Confidence 888888888887766666688888788888765432 23444 3444444322 0011123333332222
Q ss_pred HhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcC---------------
Q 000196 976 ALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKV--------------- 1039 (1874)
Q Consensus 976 ~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~~~~--------------- 1039 (1874)
..+..+.+|++.++|.++..+++++.. -|..+...+.++.. -+..+.+++..++|.+.+....
T Consensus 995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~ 1073 (1230)
T 1u6g_C 995 DHPQPIDPLLKNCIGDFLKTLEDPDLN-VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKH 1073 (1230)
T ss_dssp SSCCTHHHHHHHHSTTTHHHHSSSSTH-HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEE
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCccc
Confidence 334567788999999999999764421 13334444443333 2345567888889988876521
Q ss_pred --CCcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1040 --DAPVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1040 --~~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
+...++|+.|.+++..+...- +-.+ +..++..++..|.+ +.+++..+...|..|+..-......+++.+...+.+
T Consensus 1074 ~vd~~l~~rk~a~~~~~~ll~~~~~~i~-~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1151 (1230)
T 1u6g_C 1074 TVDDGLDIRKAAFECMYTLLDSCLDRLD-IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRA 1151 (1230)
T ss_dssp EEETHHHHHHHHHHHHHHHHHSSCSSSC-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 122489999999999997651 1111 44455556677776 589999999999999887766666666666665544
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-30 Score=357.20 Aligned_cols=774 Identities=13% Similarity=0.115 Sum_probs=527.0
Q ss_pred CcHHHHHHHHHHH-cCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhh
Q 000196 21 GSLDALNRILADL-CTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELI 97 (1874)
Q Consensus 21 ~~~~~~~~~~~~L-~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li 97 (1874)
|.+..+.+++.++ .+++.+.++ |...|..+-. ++...++..+.+. +.++ .+...|..|...+...+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~--------~~~~~~~~~l~~i---l~~~~~~~~vR~~A~~~lk~~i 69 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSN--------DNFLQFAGLSSQV---LIDENTKLEGRILAALTLKNEL 69 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHH---HTCTTSCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHh--------hCHHHHHHHHHHH---HhCCCCChHHHHHHHHHHHhhc
Confidence 5677889999999 888655554 6555544321 1123344334332 2233 46777888888888876
Q ss_pred ccccC-------------cchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCcchHHHHHHHHHHHhhhc
Q 000196 98 DVALG-------------ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 98 ~~~~~-------------~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~--g~~~~~~v~~~~~~~~~~l~ 162 (1874)
...-. -.......+-+.|...+. ..+..++..++.+++.++... +..++++++. +++.+.
T Consensus 70 ~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~----L~~~l~ 144 (861)
T 2bpt_A 70 VSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKI----MVDNTG 144 (861)
T ss_dssp CCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH----HHHHTS
T ss_pred cCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcccccHHHHHH----HHHHHh
Confidence 43100 000111122234444453 457899999999999998862 2357666555 444555
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~---~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1874)
+++++..|++|+.+++.+++..+.. +.++++.+++.+..++.|+ ++.||.+|.++++.++..+...... ... .
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~-~ 222 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER-EGE-R 222 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS-HHH-H
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC-hhH-H
Confidence 4436788999999999999875543 6789999999999999998 8999999999999876554321110 001 1
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..+++.+...+.++ ++++|++++.+++.++...++.+.+++. .++..++..+.+.++.||..++..+..++....
T Consensus 223 ~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 223 NYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 22444444445554 5889999999999999988888889999 899988888889999999999999998886531
Q ss_pred -------------hhHHHHHHHHHHHHHHHhhcCCC---------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhh
Q 000196 314 -------------DRFVTNYLKICMNHILTVLRIPA---------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAI 371 (1874)
Q Consensus 314 -------------~~f~~~yl~~~~~~Ll~~L~~~~---------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L 371 (1874)
..+...+++.++|.++..++... .|..|..+++.++...|+. .++.+++.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHT
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHc
Confidence 12455677889999988886421 3567888888888887753 3566777777777
Q ss_pred cCCCCCCCchhHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 372 APRRGKPSLEALACVGNIARAMG-PVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 372 ~~~~~~~~~~a~~~l~~l~~~~g-~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
.+.+.+.+..++.++|.+++..+ ..+.++++.+++.
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~------------------------------------------- 415 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS------------------------------------------- 415 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------------------------------------------
Confidence 54433334456667666654332 1222333222221
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhh
Q 000196 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLV 530 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~ 530 (1874)
+...+.++++.||.+|+.+++.+.
T Consensus 416 --------------------------------------------------------l~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 416 --------------------------------------------------------ILNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp --------------------------------------------------------HHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 123344567888887776665553
Q ss_pred hccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC
Q 000196 531 ANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND 610 (1874)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D 610 (1874)
..... .+. .. +++ +.+++.++..++|
T Consensus 440 ~~~~~------------------------------------------------~~~-~~---~~~--~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 440 DSVAE------------------------------------------------SID-PQ---QHL--PGVVQACLIGLQD 465 (861)
T ss_dssp HHHGG------------------------------------------------GSC-TT---TTH--HHHHHHHHHHHTS
T ss_pred HHhhh------------------------------------------------hcC-CH---HHH--HHHHHHHHHHhcc
Confidence 21000 000 00 111 2356666667777
Q ss_pred CCHHHHHHHHHHHHhhhcCCc----CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHH
Q 000196 611 EDFDVREYAISVAGRLSEKNP----AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHK 686 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p----~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1874)
+ +.||..|..+++.+++..+ ..+.|++..++..++..+...+.+...|..++.+++.+++..+..+.||+..+++
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 6 7888888888888887643 4566888887766666665431346789999999999999999889999999999
Q ss_pred HHHHHhhccCCC----------CCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 687 ALVARLLEGTGI----------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 687 ~ll~~l~~~~~~----------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
.++..+.+.... +....++..++.+++.++...|..+.||++.++|.++..+++..+..+|+.++.+++.
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 998887642000 0134567788999999999999999999999999999999876321789999999999
Q ss_pred HHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCc
Q 000196 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1874)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1874)
++...|..+.||. |.+++.++..++++ ++.+|..++.++|.
T Consensus 625 l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~vr~~a~~~l~~------------------------------------ 665 (861)
T 2bpt_A 625 LAASLGKGFEKYL--ETFSPYLLKALNQV-DSPVSITAVGFIAD------------------------------------ 665 (861)
T ss_dssp HHHHHGGGGHHHH--HHHHHHHHHHHHCT-TSHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHhccc-cHHHHHHHHHHHHH------------------------------------
Confidence 9988887777764 67888888877433 34555554444433
Q ss_pred cccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCC--cc
Q 000196 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD--DY 914 (1874)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~--~~ 914 (1874)
+++.+|..+.||++.++|.++..+++.+ +.
T Consensus 666 ------------------------------------------------l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 666 ------------------------------------------------ISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp ------------------------------------------------HHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTT
T ss_pred ------------------------------------------------HHHHhchhccchHHHHHHHHHHHhCCccccHh
Confidence 3333444445677788888888887654 67
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc-----cccchhHHHHHHHHHHHhh---hhhhccch
Q 000196 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR-----TYRGLPVLHLVQQLCLALN---DEFRTHLP 986 (1874)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~-----~~~~~~~l~~i~~l~~~l~---~~f~~yl~ 986 (1874)
+|+.++..++.++..++..+.||++.+++.+.+.......++... ......++.++..++..++ ..|.+|++
T Consensus 698 vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~ 777 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999999999999999999999999988766321100000 0012367788888888887 67999999
Q ss_pred hhHHHHHHhccccc---ccCchhhHHHHHHHHHH-H-hcchhhhhh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhc
Q 000196 987 VILPCCIQVLSDAE---RCNDYTYVLDILHTLEV-F-GGTLDEHMH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 987 ~llp~ll~~l~~~~---~~~~~~~~~~il~~l~~-~-g~~~~~~~~-~ilp~l~~~~~--~~~~~~vr~~ai~~l~~l~ 1057 (1874)
.+++.+...+.+.+ ...-|..+..++..+.. + |+.+.+|+. .++|.+++.++ .+....++..|-=+++.+.
T Consensus 778 ~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 99999999885421 11113445556665544 6 788888888 88999998886 3445667777666666554
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=360.94 Aligned_cols=655 Identities=16% Similarity=0.180 Sum_probs=471.3
Q ss_pred CcHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 21 GSLDALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
.-++++..+++.+.+.+.. ++.|...|..+++........+.+.+.++.+...+.+++++++...|.+|+.++..++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4577899999999887543 445777788888665433322222344677788888888899999999999999988865
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
..+.....+..+.+.+...+. +.|.++++.|+++|++++...+.....+++..++.++..++ +.++..|..|+.+|..
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHH
Confidence 321112223345555555553 56889999999999999987433333345555555555554 4556789999999999
Q ss_pred HHhh--cCccchhchHHHHHHHHHhh-----------cC-----------CchhHHHHHHHHHHHHHHHHhhcchhhHHH
Q 000196 180 MAEN--ASTVFNVHVAEFVDAIWVAL-----------RD-----------PTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1874)
Q Consensus 180 la~~--~p~~~~~~l~~il~~i~~~l-----------~D-----------~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1874)
+++. +...+.+++..++|.++..+ .| .+..||.+|+.+++.+.....+ .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------~ 355 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------E 355 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------G
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------H
Confidence 9975 33457889999999999988 45 4557899999999988775541 2
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 236 ~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
.+..+++.+...+.++ +|.+|++|+.+++.+.+++++.+.+++.++++.++..+++.++.||.+++.+++.++.+.+..
T Consensus 356 ~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 356 LLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3455667676667766 599999999999999998888888999999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 316 FVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
....|++.+++.++..|.+.. .|..|+.+++.++...+..+.||++.+++.+...+.....+....+++|++.++...
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 345688999999999997543 578999999999999999999999999999999886443222235789999999999
Q ss_pred CCCc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000196 394 GPVM--EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1874)
Q Consensus 394 g~~~--~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1874)
|+.+ .+|++.++|.+++. + +.+ ..
T Consensus 515 ~~~~~~~~~~~~l~p~l~~~---------~-------------------~~l----~d---------------------- 540 (852)
T 4fdd_A 515 GHHLNKPEYIQMLMPPLIQK---------W-------------------NML----KD---------------------- 540 (852)
T ss_dssp GGGGCCHHHHHHHHHHHHHH---------H-------------------HHS----CT----------------------
T ss_pred hhhhccHHHHHHHHHHHHHH---------H-------------------Hhc----cc----------------------
Confidence 9865 35888888876631 0 000 00
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccc
Q 000196 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT 550 (1874)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~ 550 (1874)
++. ....++++++.+. --|..+.+|+..++.. |..++.
T Consensus 541 -----~~~-~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~----------------~~~~l~------------------- 579 (852)
T 4fdd_A 541 -----EDK-DLFPLLECLSSVATALQSGFLPYCEPVYQR----------------CVNLVQ------------------- 579 (852)
T ss_dssp -----TCT-THHHHHHHHHHHHHHHGGGGHHHHHHHHHH----------------HHHHHH-------------------
T ss_pred -----ccH-HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH----------------HHHHHH-------------------
Confidence 000 1122344444331 0122334444443211 111110
Q ss_pred ccchhHHHHHHHHH-HHHH----HhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHH
Q 000196 551 GGKRRRLIEELVEK-LLIA----AVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620 (1874)
Q Consensus 551 ~~~~~~~~~~vl~~-Ll~~----~~~d~~~~vR~~~l~~l~~-----~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~ 620 (1874)
..+.+ .... ...+++.++|..++..++. +..|.+++..+.+++.++.+++|+++.||+.++
T Consensus 580 ---------~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 580 ---------KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp ---------HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred ---------HHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 00000 0000 1122345555554444321 245666664557899999999999999999999
Q ss_pred HHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCC
Q 000196 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINA 700 (1874)
Q Consensus 621 ~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1874)
.+++.++..+|..+.|++..++..++..+.. ++...|..|++++|.++...+..+.||+..+++.+++.++++. .
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~--~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~---~ 725 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNP--EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN---T 725 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT--TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS---C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC---C
Confidence 9999999999999999999877767766643 4678899999999999999998999999999999999998642 3
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1874)
...++.+++.++|.|+..+++.+.||++++++.++..|.+..+.++|+.|..+|+.++...+..+ .+.+...+-.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~-----~~~~~~~~~~ 800 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV-----IQDFIFFCDA 800 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT-----GGGHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH-----HHHHHHHHHH
Confidence 56899999999999999988889999999999999999877778899999999999998865432 2334433333
Q ss_pred Hhc-CCCCHHHHHHHHHHHH
Q 000196 781 MLN-GELVWSTRREVLKVLG 799 (1874)
Q Consensus 781 ~l~-~~~~~~vr~~al~~lg 799 (1874)
+.+ .+..++++....+++.
T Consensus 801 ~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 801 VASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 332 2235677776666653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-28 Score=338.66 Aligned_cols=782 Identities=14% Similarity=0.123 Sum_probs=533.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHh-------
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAE------- 182 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~------- 182 (1874)
+...|..+. +.|.++++.|.+.|..+... ..+++ +..+++.+.++ .+...|..|..+|+....
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~---~~~~~----~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVE---NLPTF----LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhc---ChhhH----HHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 344555655 35899999999999887652 12333 33444444433 456789898889888642
Q ss_pred -----hcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCC-ChhH
Q 000196 183 -----NASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA-PVHS 256 (1874)
Q Consensus 183 -----~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~-~~~~ 256 (1874)
..+..-......+.+.++.+|.++++.+ ..++.+++.++..... ..+| ..+++.+...+.+++ +..+
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~-----~~~w-~~ll~~l~~~l~~~~~~~~~ 146 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP-----VNQW-PELIPQLVANVTNPNSTEHM 146 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG-----GTCC-TTHHHHHHHHHHCTTCCHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc-----cccc-HHHHHHHHHHHhCCCCCHHH
Confidence 2333334455667778899999998888 8888888887654211 0112 345666666666652 4688
Q ss_pred HHHHHHHHHHHHHc-chhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHH-HHHHHHHHHHHHhh
Q 000196 257 IHGSLLAVGELLRN-TGEFMMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVT-NYLKICMNHILTVL 332 (1874)
Q Consensus 257 ~~~al~~l~~ll~~-~~~~~~~~~~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~~-~yl~~~~~~Ll~~L 332 (1874)
+++++.+++.+.+. .++.+.+++..++..++..+.+. +..+|..++.++..++.+.+..+.. .+.+.+++.+...+
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~ 226 (876)
T 1qgr_A 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 99999999999884 35566778888888888888776 6889999999999988765543321 11134677777666
Q ss_pred cCCC--CcchHHHHHHHHHhhchhhhhhhhH-HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 333 RIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 333 ~~~~--~R~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
...+ .|..++.+++.++...++.+.||++ .+++.+...+.+.....+..++++|..+++... .+. .
T Consensus 227 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~-----~~~------~ 295 (876)
T 1qgr_A 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLA------I 295 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----HHH------H
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-----hHh------h
Confidence 5543 4789999999999999988889998 899988887754433334567777777766421 000 0
Q ss_pred hcCCCHHHHHHHHHHHHh-CC--CChHHH---HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHH
Q 000196 410 SAGLSTTLVDALEQITVS-IP--SLLPTI---QDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQ 483 (1874)
Q Consensus 410 ~~~ls~~l~~~l~~i~~~-~p--~l~~~i---~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1874)
. ..+. ..+. .| .....+ .+.++ .
T Consensus 296 ~------~~~~---~~~~~~~~~~~~~~~~~~~~~ll------------------------------------------~ 324 (876)
T 1qgr_A 296 E------ASEA---AEQGRPPEHTSKFYAKGALQYLV------------------------------------------P 324 (876)
T ss_dssp H------HHHH---HHHSSCCSSCCCCHHHHHHHHHH------------------------------------------H
T ss_pred h------hccc---cccCCCccchhHHHHHHHHHHHh------------------------------------------H
Confidence 0 0000 0000 00 000000 00000 0
Q ss_pred HHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHH
Q 000196 484 LALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE 563 (1874)
Q Consensus 484 ~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 563 (1874)
..++.|.... .-.+++++.+|++|+.++..+..... ...+..+++
T Consensus 325 ~ll~~l~~~~---------------~d~~~~~~~~r~~a~~~l~~l~~~~~--------------------~~~~~~~l~ 369 (876)
T 1qgr_A 325 ILTQTLTKQD---------------ENDDDDDWNPCKAAGVCLMLLATCCE--------------------DDIVPHVLP 369 (876)
T ss_dssp HHHHHTTCCC---------------SSCCTTCCCHHHHHHHHHHHHHHHHG--------------------GGGHHHHHH
T ss_pred HHHHHhhccc---------------ccccccccHHHHHHHHHHHHHHHHCc--------------------HhhHHHHHH
Confidence 0111111000 00023467899999888877764221 122455665
Q ss_pred HHHHHHhcCCChhHHHHHHHhccC-CCC-----cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc--c
Q 000196 564 KLLIAAVADADVTVRHSIFSSLYG-NRG-----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--L 635 (1874)
Q Consensus 564 ~Ll~~~~~d~~~~vR~~~l~~l~~-~~~-----f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--~ 635 (1874)
.+ ...+.|+++.+|.+++.+|+. ... +.+++ +.+++.++..++|+++.||..|+.++++++...+..+ .
T Consensus 370 ~l-~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 370 FI-KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HH-HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HH-HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 44 345789999999999988852 111 22233 4578889999999999999999999999999887653 4
Q ss_pred hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc--------------cccccchHHHHHHHHHHhhccCCCCCC
Q 000196 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------------RLIRPYIAPIHKALVARLLEGTGINAN 701 (1874)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------------~~~~py~~~il~~ll~~l~~~~~~~~~ 701 (1874)
|++..++..++..+.+ +++.|+.++++|+.+++.++ +.+.||++.+++.+++.+.+... .+
T Consensus 447 ~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~ 521 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQ 521 (876)
T ss_dssp TTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CS
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--ch
Confidence 7788877777776643 37789999999999998754 45889999999999999886421 24
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC----------cc----hhhHHHHHHHHHHHHhhcc-cccc
Q 000196 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----------AA----VTKREVAVSTLGQVVQSTG-YVIT 766 (1874)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~----------~~----~~~r~~A~~~Lg~l~~~~~-~~i~ 766 (1874)
..++..++.+++.++...|..+.+|+..++|.+++.+.+. .+ .+.|..++.+|+.++...| ..+.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5788889999999999999999999999999999988641 11 3457788999999999998 7778
Q ss_pred ccccchHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCC
Q 000196 767 PYNEYPQLLGLLLKMLNGELV-WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWP 845 (1874)
Q Consensus 767 p~~~~p~ll~~Ll~~l~~~~~-~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 845 (1874)
||. |.+++.+++.+++... +.+|..++.++|.+..-..
T Consensus 602 ~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~--------------------------------------- 640 (876)
T 1qgr_A 602 QIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG--------------------------------------- 640 (876)
T ss_dssp TTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred HHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH---------------------------------------
Confidence 875 7899999999976531 4789999999887642000
Q ss_pred CCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcC--CcchhHHHHHHH
Q 000196 846 SFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC--DDYLKDYITWKL 923 (1874)
Q Consensus 846 ~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~--~~~~~~~~~~~l 923 (1874)
.....|+ ..+++.|...|.+.........++.++..+.+..|..+.||++.+++.++..+.+. +..++..++..+
T Consensus 641 --~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 641 --GEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp --GGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred --hhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 0011233 44668888888876444567788999999999999888899999999999999873 456899999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc-----cccchhHHHHHHHHHHHhh----------hhhhccchhh
Q 000196 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR-----TYRGLPVLHLVQQLCLALN----------DEFRTHLPVI 988 (1874)
Q Consensus 924 ~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~-----~~~~~~~l~~i~~l~~~l~----------~~f~~yl~~l 988 (1874)
|.++..+|..+.+|++.+++.+.+.......++... ......++.++..++..++ ..|.||++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999988765331000000 0112246777777777766 3689999999
Q ss_pred HHHHHHhccccc-ccCchhhHHHHHHHHH-HHhc-chhhh-hhhhHHHHHH-hhcCCCcHHHHHHHHHHHHhhcc
Q 000196 989 LPCCIQVLSDAE-RCNDYTYVLDILHTLE-VFGG-TLDEH-MHLLLPALIR-LFKVDAPVDIRRAAIETLTRLIP 1058 (1874)
Q Consensus 989 lp~ll~~l~~~~-~~~~~~~~~~il~~l~-~~g~-~~~~~-~~~ilp~l~~-~~~~~~~~~vr~~ai~~l~~l~~ 1058 (1874)
++.+...+.+.+ ...-|..+..++..+. .+|. .+.+| ...++|.+++ .+.. .+..+|..|..++|.+++
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~-~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS-KTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHH
Confidence 988877765431 1111333444444443 2455 56667 4567888888 7744 367899999999998864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-23 Score=271.53 Aligned_cols=574 Identities=13% Similarity=0.054 Sum_probs=388.5
Q ss_pred CCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc
Q 000196 20 GGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELID 98 (1874)
Q Consensus 20 ~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~ 98 (1874)
+.+...+..+++.|++++...|. |++.|..++. .+.++ +..+++...+.+.+ +++...|..+..+++.+..
T Consensus 6 ~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~----~~~~~---~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVE---RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp TTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHH---HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSG
T ss_pred CCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHH----HhCHH---HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHh
Confidence 34556789999999998765554 7777766652 33333 23345566666655 5677788888888888765
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
..++. .....+.+.|..++. ..+..|+..|+++++.++..- ..+.+.. .++.+.+.. .+.++..|.+|+.++
T Consensus 78 ~~~~~--~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l~-~~~~~~~R~~a~~~l 150 (588)
T 1b3u_A 78 LVGGP--EYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLA-GGDWFTSRTSACGLF 150 (588)
T ss_dssp GGTSG--GGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHH-TCSSHHHHHHHGGGH
T ss_pred ccCcH--HHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHH
Confidence 53221 123345556666654 468899999999999998752 2232222 333333322 345678899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 178 ~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
+.++...+.. ..+.+++.+...+.|+++.||.+|+.+++.+...... ..+...+++.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr 220 (588)
T 1b3u_A 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL------DNVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH------HHHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH------HhHHHHHHHHHHHHhcCC-cHHHH
Confidence 9999887753 4677888888999999999999999999988765431 234566777777777666 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
.+|+.+++.+....++. ...+.+.+.+....++++..||.+++.+++.++...+.. .+.+.+++.+...++++.
T Consensus 221 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcH
Confidence 99999999998754421 223345566666678889999999999999998754332 245678888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhhh--hhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000196 337 -ERDSGFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1874)
Q Consensus 337 -~R~~a~~alg~la~~v~~~~~--p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~l 413 (1874)
.|..|..++|.++...|.... ++++.+++.+...+.+.+..++..++.+++.++..+|+.. ..+.
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~---------- 363 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEH---------- 363 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHH----------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHH----------
Confidence 588999999999998886533 5677778777777755443334455555555555444311 0011
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000196 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1874)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1874)
T Consensus 364 -------------------------------------------------------------------------------- 363 (588)
T 1b3u_A 364 -------------------------------------------------------------------------------- 363 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
+...+...+.+++++||.+|..+++.+..... .......+++.|.. ...|+
T Consensus 364 ---------l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------------------~~~~~~~~lp~l~~-~~~d~ 414 (588)
T 1b3u_A 364 ---------LLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ---------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ---------HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHH-HhcCC
Confidence 11122233445566777776666655543210 01123444554444 35778
Q ss_pred ChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhC
Q 000196 574 DVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1874)
++.+|..++.++.. ...+.+....+.+++.++..++|++..||..|+..++.++...+... .+. .++..+..+..+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~-~llp~l~~~~~~ 491 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHA-TIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHH-HTHHHHHHTTTC
T ss_pred CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHH-HHHHHHHHHhhC
Confidence 88888888777641 00001111124578888999999999999999999999988654321 122 233334444444
Q ss_pred CCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHH
Q 000196 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1874)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp 732 (1874)
.+...|..++.+++.+++.++.. .|.+.+++.++..+.|+ ++.|+..++.+++.++...|..+. .+.++|
T Consensus 492 -~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p 561 (588)
T 1b3u_A 492 -PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDNSTL--QSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCHHHH--HHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-----CchHHHHHHHHHHHHHHHhchhhh--HHHHHH
Confidence 67888999999999999887643 37788888898888875 789999999999999988776542 267888
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 733 ~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
.+...+.|. +.++|..|..+|+.+.
T Consensus 562 ~l~~l~~d~-d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhh
Confidence 888866665 6899999999998763
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=260.62 Aligned_cols=563 Identities=14% Similarity=0.096 Sum_probs=384.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~ 152 (1874)
.+.+.++++++..|..|+.++..+.... | .......+.++|.... ..+.+|+..+++++|.+...-|. .++++.
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~-~-~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALAL-G-VERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHS-C-HHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHh-C-HHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 3455677899999999999998886532 2 1122334567777666 35789999999999988765221 123333
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
.++.+...+ .+.+...|.+|+..|+.++...|. .+.+ .++|.+.....++++.+|.+|+.+++.+.....
T Consensus 88 ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----- 158 (588)
T 1b3u_A 88 LLPPLESLA-TVEETVVRDKAVESLRAISHEHSPSDLEA---HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----- 158 (588)
T ss_dssp GHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHHHHHH---THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----
T ss_pred HHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----
Confidence 333333322 445667899999999999988775 2222 345555566678889999999998887654322
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 232 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
......+++.+...+.++ ++++|.+++.+++.+.+..+.. .+...+++.+....++.+..||..++.+++.++..
T Consensus 159 --~~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 --SAVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp --HHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 112345566555666665 4788999999999998754421 23455667777777888999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHH
Q 000196 312 LRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1874)
Q Consensus 312 ~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l 389 (1874)
.+.. .+.+.++|.+...+.++. .|..|..++|.++..+|.+ .+.+.+++.+...+.+....++..+..+++.+
T Consensus 234 ~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 234 LPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp SCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6543 234667777777776543 5889999999999888764 24566777777777665444455677788887
Q ss_pred HHHhCCCch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 000196 390 ARAMGPVME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVM 467 (1874)
Q Consensus 390 ~~~~g~~~~--p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 467 (1874)
+..+|+... ++++.++|.
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~------------------------------------------------------------ 328 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPC------------------------------------------------------------ 328 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHH------------------------------------------------------------
T ss_pred HHHhChhhhhhHHHHHHHHH------------------------------------------------------------
Confidence 777765432 222222221
Q ss_pred CCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccc
Q 000196 468 NIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547 (1874)
Q Consensus 468 ~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~ 547 (1874)
+..++.++++.||.+|+.+++.+.....
T Consensus 329 ---------------------------------------l~~~l~d~~~~vR~~a~~~l~~l~~~~~------------- 356 (588)
T 1b3u_A 329 ---------------------------------------IKELVSDANQHVKSALASVIMGLSPILG------------- 356 (588)
T ss_dssp ---------------------------------------HHHHHTCSCHHHHHHHHTTGGGGHHHHC-------------
T ss_pred ---------------------------------------HHHHhcCCCHHHHHHHHHHHHHHHHHhh-------------
Confidence 1123445677888877776666543211
Q ss_pred cccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc----cHhhHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDFDVREYAISVA 623 (1874)
Q Consensus 548 ~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~----~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1874)
.......+++.++. .+.|++++||..++.+++. +...+. .+.+++.+...++|++..||..++..+
T Consensus 357 ------~~~~~~~l~p~l~~-~l~d~~~~Vr~~a~~~l~~---l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 357 ------KDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDC---VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp ------HHHHHHHTHHHHHH-HHTCSCHHHHHHHHTTCHH---HHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------HhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 01112334443333 4679999999999998852 211111 245678888889999999999999999
Q ss_pred HhhhcCCcCcc-chHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 624 GRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 624 ~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
+.++...+..+ .+.+-+ .+..+..+ ++...|+.|+..++.+++..+.. .+.+.+++.+...+.+ .+.
T Consensus 427 ~~l~~~~~~~~~~~~l~~----~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~-----~~~ 494 (588)
T 1b3u_A 427 PLLAGQLGVEFFDEKLNS----LCMAWLVD-HVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGD-----PNY 494 (588)
T ss_dssp HHHHHHHCGGGCCHHHHH----HHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTC-----SCH
T ss_pred HHHHHHcCHHHHHHHHHH----HHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhC-----CCH
Confidence 99987655432 333332 33333334 56789999999999999886643 2456677777665554 378
Q ss_pred hHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
.++..++.+++.++...|.. .|.+.++|.+...+.|. +.++|..++++|+.++...|.... .+.+++.+..++
T Consensus 495 ~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~l~ 567 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHc
Confidence 89999999999999877754 47889999999999886 578999999999999987765311 146777777754
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 000196 783 NGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 783 ~~~~~~~vr~~al~~lg~lg 802 (1874)
++.++.+|..+..+++.+.
T Consensus 568 -~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 568 -QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -TCSSHHHHHHHHHHHHHTT
T ss_pred -CCCchhHHHHHHHHHHHhh
Confidence 4568999999999988764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-14 Score=196.85 Aligned_cols=671 Identities=10% Similarity=0.117 Sum_probs=389.4
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh-cC--
Q 000196 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN-AS-- 185 (1874)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~-~p-- 185 (1874)
.+...|...+. .|.+++ |.+.|..+-.. ++|...++ +.+. ...+...|.+|...++..... ..
T Consensus 6 ~l~~~L~~~~s--pd~~~r--Ae~~L~~~~~~-----p~~~~~L~----~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 6 TVAKFLAESVI--ASTAKT--SERNLRQLETQ-----DGFGLTLL----HVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHHHTTS--GGGHHH--HHHHHHHHHTS-----TTHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHHhcC--CCHHHH--HHHHHHHhhcC-----CCHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 45566666553 356666 77788777443 33433333 3332 234456788888888876654 32
Q ss_pred ---ccch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000196 186 ---TVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1874)
Q Consensus 186 ---~~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al 261 (1874)
..+. ..-..|-..++.++.++...||...+.+++.++..-- + .+| +.+++.+.+.+.+++ ...++|++
T Consensus 73 ~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~---p---~~W-p~ll~~L~~~l~s~~-~~~~~~aL 144 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF---P---DRW-PTLLSDLASRLSNDD-MVTNKGVL 144 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS---T---TTC-TTHHHHHHTTCCSSC-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---c---cch-hHHHHHHHHHhCCCC-HHHHHHHH
Confidence 1232 2444566778888877779999999998887654311 1 234 567888888887664 56899999
Q ss_pred HHHHHHHHcch------h-------hhHHHHHHHHH---HHHHHhhcc--h-h------HHHHHHHHHhHhHhhhChhhH
Q 000196 262 LAVGELLRNTG------E-------FMMSRYREVAE---IVLRYLEHR--D-R------LVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 262 ~~l~~ll~~~~------~-------~~~~~~~~i~~---~ll~~~~~~--~-~------~vr~~~~~~i~~la~~~~~~f 316 (1874)
.++..+.+... + .+...+..+++ .+...++.. + . .++..++.++..+..+.-..+
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 99999987321 1 12222222222 222223322 1 1 222335555555544443445
Q ss_pred HHHHHHHHHHHHHHhhcCC--------CC---------cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC-
Q 000196 317 VTNYLKICMNHILTVLRIP--------AE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP- 378 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~--------~~---------R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~- 378 (1874)
.+..++..++.+...|... ++ |..++.++..++...++.+.||++.+++.+.+.+.......
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 5556677778777776431 11 34678899999888888899999999988877774321111
Q ss_pred ----CchhHHHHHHHHHHhC--CCch--HHHHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC
Q 000196 379 ----SLEALACVGNIARAMG--PVME--PHVRGLLD-IMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSK 449 (1874)
Q Consensus 379 ----~~~a~~~l~~l~~~~g--~~~~--p~l~~ll~-~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~ 449 (1874)
...++++|..+++.-. ..|. |++..++. .++ ..+.
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~-------------------------------~~m~----- 348 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL-------------------------------PNVT----- 348 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH-------------------------------HHHS-----
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH-------------------------------HhcC-----
Confidence 1246666665543110 1121 33333331 111 0110
Q ss_pred CCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHh
Q 000196 450 SHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKL 529 (1874)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l 529 (1874)
+. . +|.+ .|.+ .-.+|+++... +++...+|++|...+..+
T Consensus 349 --~~----------------~---~d~e---------------~w~~-dp~e~i~~d~e---~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 349 --LR----------------E---EDVE---------------LFED-DPIEYIRRDLE---GSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp --CC----------------G---GGTT---------------TTTT-CHHHHHHHHHH---C----CHHHHHHHHHHHH
T ss_pred --CC----------------H---HHHH---------------HHhc-CHHHHHHhccC---cccccCcHHHHHHHHHHH
Confidence 00 0 0000 0000 01234444322 233457888877666555
Q ss_pred hhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC
Q 000196 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN 609 (1874)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~ 609 (1874)
..... ..++..+++.+.. .+.... .-.
T Consensus 389 ~~~~~--------------------~~v~~~~l~~i~~-------------~l~~~~--------------------~~~ 415 (960)
T 1wa5_C 389 KEKNE--------------------VLVTNIFLAHMKG-------------FVDQYM--------------------SDP 415 (960)
T ss_dssp HHHCH--------------------HHHHHHHHHHHHH-------------HHHHHH--------------------C--
T ss_pred HHHcc--------------------hhHHHHHHHHHHH-------------HHHHhc--------------------cCc
Confidence 43110 0111111111100 011000 001
Q ss_pred CCCHHHHHHHHHHHHhhhcCC-----cC-------ccchHHHHHHHHHHHHHhhC-CCChHhHHHHHHHHHHHHHhCccc
Q 000196 610 DEDFDVREYAISVAGRLSEKN-----PA-------YVLPALRRHLIQLLTYLEQS-SADNKCREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 610 D~~~~VR~~a~~~l~~l~~~~-----p~-------~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1874)
+++...|++|+.++|.++... |. .+.+.+.+.+ +..+... +..+..|..|++++|.+++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v---~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI---APDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT---HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh---HHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 345778999999999997542 11 2223333322 3334322 0267889999999999987653
Q ss_pred cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-----------ccchhhcHHhHHHHHHHHHhcCc---
Q 000196 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----------GFGMRQYISELMPLIVEALLDGA--- 742 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----------g~~~~~~~~~llp~l~~~l~d~~--- 742 (1874)
..++.++++.++..+.+. +..|+.+++.++..+++.. .+.+.||++++++.++..+....
T Consensus 491 -~~~l~~~l~~l~~~L~d~-----~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~ 564 (960)
T 1wa5_C 491 -KAQLIELMPILATFLQTD-----EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP 564 (960)
T ss_dssp -HHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred -HHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence 357888999999998864 6788999999999988742 35689999999999999987531
Q ss_pred -chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhccc-CccchhhhcccC
Q 000196 743 -AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLKVLGIMGAL-DPHAHKRNQQLS 816 (1874)
Q Consensus 743 -~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~----~~~~~~vr~~al~~lg~lgal-dp~~~~~~~~~~ 816 (1874)
.....+.+..+++.++...+..+.||. +.+++.|.+.+. ++.++..+..++.++|.+... .|-
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~--------- 633 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ--------- 633 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG---------
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc---------
Confidence 112446889999999999988889985 467777776663 344667777778888776521 110
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~ 896 (1874)
.-.-|...+++.+..+|.... .+..+.+.+.+..+++.. ..+.||
T Consensus 634 ---------------------------------~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~ 678 (960)
T 1wa5_C 634 ---------------------------------NLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIPES 678 (960)
T ss_dssp ---------------------------------GHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCCTT
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCCHH
Confidence 001134567778888886432 356677888888888776 667889
Q ss_pred ccchhHHHH--HHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000196 897 LPKVLPDLF--HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1874)
Q Consensus 897 l~~ilp~ll--~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1874)
+.+++|.++ ..++.. .....+...+..++....+.+.. ++.++..+........ . ....+.+++.++
T Consensus 679 ~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~-------~~~a~~ll~~i~ 747 (960)
T 1wa5_C 679 IKPLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA-Y-------EVHGFDLLEHIM 747 (960)
T ss_dssp TGGGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT-T-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc-c-------cchHHHHHHHHH
Confidence 999999887 544432 11122222222222221111111 1445555444443221 0 126889999999
Q ss_pred HHhhhh-hhccchhhHHHHHHhccc
Q 000196 975 LALNDE-FRTHLPVILPCCIQVLSD 998 (1874)
Q Consensus 975 ~~l~~~-f~~yl~~llp~ll~~l~~ 998 (1874)
..++.+ |.||++.+++.++..+..
T Consensus 748 ~~~~~~~~~~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 748 LLIDMNRLRPYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGS
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999988 999999999999999965
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-14 Score=200.31 Aligned_cols=437 Identities=13% Similarity=0.104 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
.-|..+..++..++...|..+++.+-+.+.+.+......+.+++.++.++.+++.+++.+.....++++.+++ +++.+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcC
Confidence 5788888999999988886666766666666655432222568899999999999999887777788888888 555555
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchH
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ 773 (1874)
.. +.++.|+..++.++|.++...+... .|++.++|.++..| | ..++..|..+|..+++.++..+.||. ++
T Consensus 515 ~~---d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~--~~ 584 (971)
T 2x1g_F 515 YE---KLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYA--DP 584 (971)
T ss_dssp TT---TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHH--HH
T ss_pred cc---ccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccH--HH
Confidence 21 1378899999999999998766543 79999999999999 4 46899999999999999888788885 78
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 774 LLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 774 ll~~Ll~~l~~~~-~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
+++.+..++.... +...+..++.++|.+...-|.... . + .-+
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~-~-----------------------------------~-~~~ 627 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI-P-----------------------------------K-YLD 627 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH-H-----------------------------------H-HHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH-H-----------------------------------H-HHH
Confidence 9999999997642 578899999999886421111000 0 0 000
Q ss_pred chHHHHHHHHHHHccCCC----chhhHHHHHHHHHHHHHHhCC-------------CCCCCccchhHHHHHHHhcC--Cc
Q 000196 853 YYSTVAINSLMRILRDPS----LASYHQKVVGSLMFIFKSMGL-------------GCVPYLPKVLPDLFHTVRTC--DD 913 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s----~~~~~~~v~~al~~i~~~~~~-------------~~~~~l~~ilp~ll~~l~~~--~~ 913 (1874)
-+...++..+..+++.+. ........+..+..+++.++. .+.++.++++|.+...+... ++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEI 707 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccH
Confidence 011233444444444332 111222455666677776653 34567889999999888754 44
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchh
Q 000196 914 YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPV 987 (1874)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~ 987 (1874)
.+.+.++..++.++...+..+.||+|.+++.+...+.... ...++.+++.++..++.+ +...+..
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~---------~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~ 778 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC---------CAPTLEISKTAIVMFFKDEGCKPLMQQLLRE 778 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C---------CHHHHHHHHHHHTTCCC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6889999999999999999999999999999988877533 136788888888877764 4455555
Q ss_pred hHHHHHHhcccc---cccCchhhHHHHHHHHHHHhcchh------hh-hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000196 988 ILPCCIQVLSDA---ERCNDYTYVLDILHTLEVFGGTLD------EH-MHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 988 llp~ll~~l~~~---~~~~~~~~~~~il~~l~~~g~~~~------~~-~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~ 1057 (1874)
++..+++.+... +.....+.....+..+..+...-. +. +..+++..+..+... .....++++..+..+.
T Consensus 779 ~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 779 FIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 555555555432 111112222223332222222111 33 444555555555432 2333456677776653
Q ss_pred cccc--------ccchhHhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhccccccchh
Q 000196 1058 PRVQ--------VTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTIFIP 1108 (1874)
Q Consensus 1058 ~~~~--------~~~~~~~ii~~l~~~l~~~-~~~l~~~al~~L~~l~~~~g~~f~~~ip 1108 (1874)
.... +..+.+.++..++..+.+. .......+.++|..+....|..+..|+.
T Consensus 858 ~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 858 MQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 3210 1223344444444433322 2344455566677777666655555554
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-13 Score=191.90 Aligned_cols=401 Identities=15% Similarity=0.158 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhc
Q 000196 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~ 694 (1874)
-|..+.+++..++...|..+.+.+.+.+.+.+.....+ .+++.++.++.+++.+++.+.....++++.+++.+. .+.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP-YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS-CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCC
Confidence 47778888888887766555555544444444222133 578899999999999999887777788888777443 3332
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 695 GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 695 ~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
.++.++..++.++|..+...+.. .+|++.+++.++..|.+ ..++..|+.+|..+++.++..+.||. +++
T Consensus 501 -----~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~--~~i 569 (963)
T 2x19_B 501 -----SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYA--ANI 569 (963)
T ss_dssp -----CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTH--HHH
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhH--HHH
Confidence 26779999999999998865533 37899999999999965 57899999999999998888888885 789
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 000196 775 LGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY 853 (1874)
Q Consensus 775 l~~Ll~~l~~~-~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 853 (1874)
++.+..++... -+...+..++.++|.+..--| ... ...
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~---------------------------------------~~~- 608 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEE---------------------------------------ILK- 608 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHH---------------------------------------HHH-
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHH---------------------------------------HHH-
Confidence 99999988753 357889888999988642111 000 001
Q ss_pred hHHHHHHHHHH----HccCCCchh---hHHHHHHHHHHHHHHhCCC----------------------CCCCccchhHHH
Q 000196 854 YSTVAINSLMR----ILRDPSLAS---YHQKVVGSLMFIFKSMGLG----------------------CVPYLPKVLPDL 904 (1874)
Q Consensus 854 ~~~~vi~~Ll~----iL~d~s~~~---~~~~v~~al~~i~~~~~~~----------------------~~~~l~~ilp~l 904 (1874)
|...+++.+.. +.+.+...+ .....++++..+++.++.. +.++++.++|.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 11222222222 222221111 1224677788888887642 234678888888
Q ss_pred HHHHhcC--CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH--Hhhhh
Q 000196 905 FHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL--ALNDE 980 (1874)
Q Consensus 905 l~~l~~~--~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~~ 980 (1874)
+..+... ++.+.+.++..++.++..++.++.||+|++++.+........ ...++.+++.+.. ..++.
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---------~~~~l~l~~~li~~f~~~~~ 759 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---------QASALDLTRQLVHIFAHEPA 759 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---------CHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHHhCCCcc
Confidence 8877653 456788888999999988899999999999998876655322 1257888888877 44444
Q ss_pred hhccchhhHHHHH----HhcccccccCchhhHH---HHHHHHHHHh--cch-hhh-hhhhHHHHHHhhcCCCcHHHHHHH
Q 000196 981 FRTHLPVILPCCI----QVLSDAERCNDYTYVL---DILHTLEVFG--GTL-DEH-MHLLLPALIRLFKVDAPVDIRRAA 1049 (1874)
Q Consensus 981 f~~yl~~llp~ll----~~l~~~~~~~~~~~~~---~il~~l~~~g--~~~-~~~-~~~ilp~l~~~~~~~~~~~vr~~a 1049 (1874)
+.++++.++..++ ..+.+ +-........ .++..+.... ..+ .+. +..+++.++..+.. ....+.+.+
T Consensus 760 ~~~~~~~~l~~~~~~~l~~~~~-~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~ 837 (963)
T 2x19_B 760 HFPPIEALFLLVTSVTLTLFQQ-GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKAS 837 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 5666655554444 34432 1111223333 3333333211 111 233 56667777777753 467788899
Q ss_pred HHHHHhhccccc--------ccchhHhHHHHHHHHhCCC
Q 000196 1050 IETLTRLIPRVQ--------VTGHISSLVHHLKLVLDGK 1080 (1874)
Q Consensus 1050 i~~l~~l~~~~~--------~~~~~~~ii~~l~~~l~~~ 1080 (1874)
+..+..+..... +..+...++..++.++.+.
T Consensus 838 l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 838 CGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998875421 3456677777777777643
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-12 Score=177.29 Aligned_cols=736 Identities=10% Similarity=0.091 Sum_probs=412.1
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhhhC-C----
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLARAG-G---- 143 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~lg~l~~~~-g---- 143 (1874)
|.+.+.. ..+++.+.| |-..++.+-..+ .|..+|..++.. +.+.++|..|+-.|.+.+... .
T Consensus 7 l~~~L~~-~~spd~~~r--Ae~~L~~~~~~p---------~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 7 VAKFLAE-SVIASTAKT--SERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp HHHHHHH-TTSGGGHHH--HHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred HHHHHHH-hcCCCHHHH--HHHHHHHhhcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4444444 345666666 555555552211 266677777632 346899999999999887642 1
Q ss_pred --CcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 144 --AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 144 --~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
....+-....=..+++.+..+. ...|..+..++..|+.. .| ..-+.+++.++..+.++++..+.++..++..
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2344444444445666665443 56788888889999876 44 2447888999999988888899999999988
Q ss_pred HHHHHhh--cchhhH---HHHHHH-------HHHHHHhhccCCCC--hhHH------HHHHHHHHHHHH-cchhhhHHHH
Q 000196 221 CLRVIEK--RETRWR---VQWYYR-------MFEATQDGLGRNAP--VHSI------HGSLLAVGELLR-NTGEFMMSRY 279 (1874)
Q Consensus 221 ~~~~i~~--r~~~~~---~~~~~~-------i~~~~~~~l~~~~~--~~~~------~~al~~l~~ll~-~~~~~~~~~~ 279 (1874)
+++.... +....+ ...+.. ++..+...+.++.. ...+ +.++.++..+.. ..++++..++
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~ 229 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI 229 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 7764321 111111 112222 22233334544321 1112 223333433322 2234555566
Q ss_pred HHHHHHHHHHhhcc---------------hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC----CCC---
Q 000196 280 REVAEIVLRYLEHR---------------DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI----PAE--- 337 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~---------------~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~----~~~--- 337 (1874)
...++.++..+... ...+|+.++.++-.++...++.|. .|++.++..+...+.+ ...
T Consensus 230 ~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (960)
T 1wa5_C 230 QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG-PMINEFIQITWNLLTSISNQPKYDIL 308 (960)
T ss_dssp HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHCCSCTTSHHH
T ss_pred HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 66666555544221 135788899999998877777774 5888888888887752 122
Q ss_pred cchHHHHHHHHHhhch--hhhh--hhhHHHH-HHHHHhhcCC-------CCC----------------CCchhHHHHHHH
Q 000196 338 RDSGFIALGEMAGALD--GELF--HYLPTIT-SHLREAIAPR-------RGK----------------PSLEALACVGNI 389 (1874)
Q Consensus 338 R~~a~~alg~la~~v~--~~~~--p~l~~i~-~~l~~~L~~~-------~~~----------------~~~~a~~~l~~l 389 (1874)
+..++.-+..++..-. ..+. +|++.++ ..+...+.-. ..+ ++..+..++..+
T Consensus 309 ~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 309 VSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp HHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHH
Confidence 3456666665543221 1233 7788777 4555554210 111 112344455555
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCC
Q 000196 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNI 469 (1874)
Q Consensus 390 ~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 469 (1874)
+..+|+.+.|.+-..+..+++. . ...+
T Consensus 389 ~~~~~~~v~~~~l~~i~~~l~~----------------------------------~-~~~~------------------ 415 (960)
T 1wa5_C 389 KEKNEVLVTNIFLAHMKGFVDQ----------------------------------Y-MSDP------------------ 415 (960)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHH----------------------------------H-HC--------------------
T ss_pred HHHcchhHHHHHHHHHHHHHHH----------------------------------h-ccCc------------------
Confidence 5554432222111111111110 0 0000
Q ss_pred CccccccCCchhHHHHHHhhcccccC------CC-------cchhhHHHHHhhhccCC---ChHHHHHHHHHhHHhhhcc
Q 000196 470 PQQVSDLNGSAPVQLALQTLARFNFK------GH-------DLLEFARDSVVLYLDDE---DKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 470 ~~~~~~~~~~~~~~~Al~~L~~~~f~------~~-------~l~~~v~~~~~~~l~~~---~~~VR~aAa~~~~~l~~~~ 533 (1874)
..+-..+..|+-++|.+.-. |. .+.+|+...+.+.+.++ ++-||.+|+.+++++..-.
T Consensus 416 ------~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~ 489 (960)
T 1wa5_C 416 ------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL 489 (960)
T ss_dssp --------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS
T ss_pred ------chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC
Confidence 00001122344433333100 10 34455556666766666 7888887776666543100
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCH
Q 000196 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDF 613 (1874)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~ 613 (1874)
..+.+ ..+++.++.++.|++.
T Consensus 490 --------------------~~~~l---------------------------------------~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 490 --------------------TKAQL---------------------------------------IELMPILATFLQTDEY 510 (960)
T ss_dssp --------------------CHHHH---------------------------------------HHHHHHHHHHTTCSCH
T ss_pred --------------------CHHHH---------------------------------------HHHHHHHHHHhCCCCh
Confidence 00001 1345666677788888
Q ss_pred HHHHHHHHHHHhhhcC-----------CcCccchHHHHHHHHHHHHHhhCCC-C-h--HhHHHHHHHHHHHHHhCccccc
Q 000196 614 DVREYAISVAGRLSEK-----------NPAYVLPALRRHLIQLLTYLEQSSA-D-N--KCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~-----------~p~~v~p~l~~~l~~~l~~l~~~~~-~-~--~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
.||..|..++.++++. .+..+.|++..++..++..+... + . . ...+.+..+|+.++...++.+.
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 9999999999998874 23457799988777776665542 1 0 1 1346788999999999999999
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
||++.+++.+...+........++.+...++.+++.++...+ +.+.++.+.++|.+...|+.. ..+....+...++.+
T Consensus 590 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFV 668 (960)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHH
Confidence 999999999988876531112356677778999999998744 578889999999999999743 345677788888888
Q ss_pred HhhccccccccccchHHHHHHH--HHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCC
Q 000196 758 VQSTGYVITPYNEYPQLLGLLL--KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll--~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1874)
.... ..+.|| ++++++.+. ..++... .-..++++++. |..+..
T Consensus 669 ~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~------~~~~~~----------------------- 713 (960)
T 1wa5_C 669 VEQS-ATIPES--IKPLAQPLLAPNVWELKG---NIPAVTRLLKS------FIKTDS----------------------- 713 (960)
T ss_dssp HHHC-SSCCTT--TGGGHHHHTSGGGGCCTT---THHHHHHHHHH------HHHHHG-----------------------
T ss_pred HHhc-cCCCHH--HHHHHHHHcCHHHhcCCC---CchhHHHHHHH------HHHhCh-----------------------
Confidence 8766 334554 356777776 5554321 11223333322 110000
Q ss_pred ccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHhcCC-c
Q 000196 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1874)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~l~~ilp~ll~~l~~~~-~ 913 (1874)
+ .+. . ...++..+.+.+.+... ...++..+..|+..++.. +.||++.+++.++..+.... +
T Consensus 714 -~----~~~---~------~~~~l~~~~~~~~~~~~---~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 714 -S----IFP---D------LVPVLGIFQRLIASKAY---EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp -G----GCS---C------SHHHHHHHHHHHTCTTT---HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred -H----HHH---H------HHHHHHHHHHHhCCCcc---cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 0 000 0 12344445555555542 246888999999999888 89999999999999887663 3
Q ss_pred chhHHHHHHHHHHHHHHHHh-HHHhHH-----HHHHHHHHhhcCC--CCCcccccccchhHHHHHHHHHHH---hhhhhh
Q 000196 914 YLKDYITWKLGTLVSIVRQH-IRKYLQ-----ELFSLISELWSSF--SLPATNRTYRGLPVLHLVQQLCLA---LNDEFR 982 (1874)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~-i~~y~~-----~i~~~i~~~~~~~--~~~~~~~~~~~~~~l~~i~~l~~~---l~~~f~ 982 (1874)
..+..++..++.++-..++. +.+.++ ..+.++...|-.. ..... ..+. .++..+..+... .+..+.
T Consensus 777 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~--~erk-~~~~gl~~ll~~~~~~~~~~~ 853 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL--LDRK-IALIGVLNMVINGQFFQSKYP 853 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSH--HHHH-HHHHHHHHHHHSCHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCH--HHHH-HHHHHHHHHHhcccccchhHH
Confidence 34323333344443222221 223332 1123333344211 00000 1122 233333333322 245566
Q ss_pred ccchhhHHHHHHhccc
Q 000196 983 THLPVILPCCIQVLSD 998 (1874)
Q Consensus 983 ~yl~~llp~ll~~l~~ 998 (1874)
+.++.++..+++++..
T Consensus 854 ~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 854 TLISSTMNSIIETASS 869 (960)
T ss_dssp GGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6777788877777754
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-12 Score=177.89 Aligned_cols=792 Identities=9% Similarity=0.013 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000196 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
...+.++++.+-+++.+.++ |-..|..+ .-+++. +..+ ..++ ++.+...|..|...+...+...
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~------~~~p~~----w~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~ 71 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDA------EASPQA----WQFS----WQLMQLGKSQEVQFFGAITLHSKLMKH 71 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHT------TTSTHH----HHHH----HHHTCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH------HcCHHH----HHHH----HHHHhcCCcHHHHHHHHHHHHHHHHcc
Confidence 34566777777676544443 42222221 122332 2212 2333 3567788988999998887653
Q ss_pred cCc----chhHHHH-HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhh-hcCCCcchhHHHHH
Q 000196 101 LGE----NASKVSK-FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAV 174 (1874)
Q Consensus 101 ~~~----~~~~~~~-~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~r~aA~ 174 (1874)
-.. ....++. ..+++...- .+...++...+.++..++......|+++++.++..+-.- +..-.+...+..++
T Consensus 72 w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l 149 (971)
T 2x1g_F 72 WHEVPPENREELKQKILESIVRFA--GGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIML 149 (971)
T ss_dssp GGGCCGGGHHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHH
Confidence 221 2222332 233333332 225789999999999999873226887777666553210 00001345788999
Q ss_pred HHHHHHHhhc------------CccchhchHHHHHHHHHhhcCCc-h-------hHHHHHHHHHHHHHHH--Hhhcchhh
Q 000196 175 LILKEMAENA------------STVFNVHVAEFVDAIWVALRDPT-L-------AVRERAVEALRACLRV--IEKRETRW 232 (1874)
Q Consensus 175 ~~l~~la~~~------------p~~~~~~l~~il~~i~~~l~D~~-~-------~VR~aA~~al~~~~~~--i~~r~~~~ 232 (1874)
.+|+.+++.. ...+..+++.+++.+...+.+.. + .++.+|.++++.++.. +... .
T Consensus 150 ~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~ 226 (971)
T 2x1g_F 150 EVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---G 226 (971)
T ss_dssp HHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---G
T ss_pred HHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---c
Confidence 9999888631 13355677788777766665332 2 6889999988877662 3211 2
Q ss_pred HHHHHHHHHHHHHh-hc----------cCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHH-------hhcc
Q 000196 233 RVQWYYRMFEATQD-GL----------GRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRY-------LEHR 293 (1874)
Q Consensus 233 ~~~~~~~i~~~~~~-~l----------~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~-------~~~~ 293 (1874)
...++..++. +.. -+ ...++.+.+.+|+.++.+++.... +...+.+..+++.++.. ...+
T Consensus 227 ~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (971)
T 2x1g_F 227 CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKR 305 (971)
T ss_dssp HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 3344554554 310 00 000124678899999999998422 11223334444433322 1233
Q ss_pred h---hHHHHHHHHHhHhHhhhChhhHH----------HHHHHHHHHHHHHhhcC----C-C--CcchHHHHHHHHHhhc-
Q 000196 294 D---RLVRLSITSLLPRIAHFLRDRFV----------TNYLKICMNHILTVLRI----P-A--ERDSGFIALGEMAGAL- 352 (1874)
Q Consensus 294 ~---~~vr~~~~~~i~~la~~~~~~f~----------~~yl~~~~~~Ll~~L~~----~-~--~R~~a~~alg~la~~v- 352 (1874)
+ +.+...++.++..++......|. ..++..+++.++..... . + .+..++.....++...
T Consensus 306 d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~ 385 (971)
T 2x1g_F 306 ENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVF 385 (971)
T ss_dssp SCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 4 26666777777777754443333 14667788888876643 2 2 2456776666666532
Q ss_pred -----------hhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 000196 353 -----------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDAL 421 (1874)
Q Consensus 353 -----------~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l 421 (1874)
...+.|+++.+++.+...+.-.... . ... ..+.-.+-.... .....+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~---~-----------~~~-~d~~e~~~f~~~-----R~~~~~~l 445 (971)
T 2x1g_F 386 AMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK---S-----------LAK-WSSDDLECFRCY-----RQDISDTF 445 (971)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHTSCCCTT---T-----------TSC-SCHHHHHHHHHH-----HHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-----------ccc-cCHhHHHHHHHH-----HHHHHHHH
Confidence 1124567777777766655211110 0 000 000000000000 00001111
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchh
Q 000196 422 EQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLE 501 (1874)
Q Consensus 422 ~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~ 501 (1874)
..++..++ ..+.+. +.+
T Consensus 446 ~~~~~~~~---~~~l~~------------------------------------------------------------~~~ 462 (971)
T 2x1g_F 446 MYCYDVLN---DYILEI------------------------------------------------------------LAA 462 (971)
T ss_dssp HHHHTTCT---THHHHH------------------------------------------------------------HHH
T ss_pred HHHHHHHh---HHHHHH------------------------------------------------------------HHH
Confidence 11111111 000000 112
Q ss_pred hHHHHHhhhcc-CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh-cCCChhHHH
Q 000196 502 FARDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV-ADADVTVRH 579 (1874)
Q Consensus 502 ~v~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~-~d~~~~vR~ 579 (1874)
++...+..+-. ..++..|.+|..+++.+....... ....+..+++ ++.... .|+++.||.
T Consensus 463 ~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-----------------~~~~l~~l~~-~l~~l~~~d~~~~vr~ 524 (971)
T 2x1g_F 463 MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-----------------EKRQIPRLMR-VLAEIPYEKLNVKLLG 524 (971)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------------------CHHHHHHH-HHHHSCTTTSCHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-----------------hhHHHHHHHH-HHHhcCccccCHHHHH
Confidence 22222211111 246677877777766654211100 0123444444 222112 267899999
Q ss_pred HHHHhccCCCCcchhhc-----cHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCC
Q 000196 580 SIFSSLYGNRGFDDFLA-----QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654 (1874)
Q Consensus 580 ~~l~~l~~~~~f~~~L~-----~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~ 654 (1874)
+++..++ +|..++. -+.+++.++.++ | +.|+..|..++.++++.++..+.|++..++..++..+.....
T Consensus 525 ~a~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 525 TALETMG---SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HHHHHHH---HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 9999885 3333332 134677888888 4 789999999999999988888889988877666665654312
Q ss_pred ChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCC-ChhHHHH---HHHHHHHHHHhcc---------
Q 000196 655 DNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA-NNGIISG---VLVTVGDLARVGG--------- 720 (1874)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~-~~~v~~~---~~~~l~~La~~~g--------- 720 (1874)
+...+.....+++.++...+ +...||+..++..++..+..-..... +..-... .+.+++.+....+
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 45778889999999998765 66778888888877776653210000 1212222 3334444333222
Q ss_pred ----cchhhcHHhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 721 ----FGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 721 ----~~~~~~~~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
+.+.++.++++|.+...+.+. .+..+.+.++..++.++...|..+.|| .|.+++.++..+++... ..++
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~--l~~~~~~l~~~~~~~~~----~~~l 752 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPM--LQDLCLFIVASFQTRCC----APTL 752 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTH--HHHHHHHHHHHCC--CC----HHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcccc--HHHHHHHHHHHHhcCCc----hHHH
Confidence 357888999999999988753 355788999999999999888888898 58999999988876433 2245
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCC--Cchh
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP--SLAS 873 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~--s~~~ 873 (1874)
.++|.+- .-+.. + ..+. +...+.+ ..++...+.+|... ....
T Consensus 753 ~l~~~~i--~~~~~------------------~-----~~~~----------~~l~~~~-~~~~~~~~~~l~~~~~~~~~ 796 (971)
T 2x1g_F 753 EISKTAI--VMFFK------------------D-----EGCK----------PLMQQLL-REFIQHSFKLFESTPEQNFS 796 (971)
T ss_dssp HHHHHHH--TTCCC--------------------------------------HHHHHHH-HHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHH--HHhCC------------------C-----cchH----------HHHHHHH-HHHHHHHHHHHhcccccCCc
Confidence 5555431 10100 0 0000 0011122 22333445555543 1112
Q ss_pred hHHHHHHHHHHHHHH----hCCCC--CCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH------HHhHHHhHHH
Q 000196 874 YHQKVVGSLMFIFKS----MGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV------RQHIRKYLQE 940 (1874)
Q Consensus 874 ~~~~v~~al~~i~~~----~~~~~--~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~------~~~i~~y~~~ 940 (1874)
.++.+.++...++.. ....+ .|. ++.+++..+..+...++.....++..+..++..- .+.+.++.+.
T Consensus 797 ~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~ 876 (971)
T 2x1g_F 797 NISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQ 876 (971)
T ss_dssp HTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Confidence 234455555444433 22222 266 7888888888877655544445555555555442 2233444455
Q ss_pred HHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000196 941 LFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1874)
Q Consensus 941 i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1874)
++..+....... .|.+ .. ..+..++..+....++++++|+...
T Consensus 877 l~~~l~~~~~~~-~~~s---~~-~~~a~~l~~l~~~~~~~~~~~l~~~ 919 (971)
T 2x1g_F 877 TLYTAMMCVGYL-TPRS---QV-DKFADILLAMNRKYAAEMAVWMKSL 919 (971)
T ss_dssp HHHHHHHHHHTT-SCGG---GG-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-CChh---HH-HHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 555544433211 1111 11 1455666677766677777766543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.66 E-value=9.2e-12 Score=174.57 Aligned_cols=749 Identities=11% Similarity=0.026 Sum_probs=420.3
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcchH
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTAD 148 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~~~ 148 (1874)
+.+.+..+..+++...|..|-..+..+-.-+ .+..++..++..+.+.+++-.|+.+|.+.+... .....+
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 4555555566678888887777777764332 133455556654568899999999999888753 334444
Q ss_pred HHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcC-----CchhHHHHHHHHHHH
Q 000196 149 EVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRD-----PTLAVRERAVEALRA 220 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~--~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D-----~~~~VR~aA~~al~~ 220 (1874)
-....=..+++++.+. .....|.....++..|+.. .|.. -+++++.+...++. +++..++.+...|..
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 4444455556665431 2456777788888888876 3432 24667777777765 466788888888888
Q ss_pred HHHHHhhcch---------hhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh
Q 000196 221 CLRVIEKRET---------RWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL 290 (1874)
Q Consensus 221 ~~~~i~~r~~---------~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~ 290 (1874)
+.+.+..+.. ..-..+.+.+++-+...+.+..+. .....++.++...+....... ....+++.++..+
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l 250 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHh
Confidence 7754422210 000123455655555555443221 356666666655444111111 1134556566555
Q ss_pred hcchhHHHHHHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHh-------hcCCCC--cchHHHHHHHHHhhchhhhh---
Q 000196 291 EHRDRLVRLSITSLLPRIAHFL-RDRFVTNYLKICMNHILTV-------LRIPAE--RDSGFIALGEMAGALDGELF--- 357 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~-------L~~~~~--R~~a~~alg~la~~v~~~~~--- 357 (1874)
.++.+|.+++.++..+..-. +..+. ..+..+++.++.. +...+. .....+.+..++......+.
T Consensus 251 --~~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 251 --QDSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp --TSTTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred --CCchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 35778999999998887532 22222 2333444433322 222111 11223333333332222222
Q ss_pred ---hhhHHHHHHHHHhhcC-----CCCCCCchhHHHHHHHHHHhCC-----------CchHHHHHHHHHHHhcCCCHHHH
Q 000196 358 ---HYLPTITSHLREAIAP-----RRGKPSLEALACVGNIARAMGP-----------VMEPHVRGLLDIMFSAGLSTTLV 418 (1874)
Q Consensus 358 ---p~l~~i~~~l~~~L~~-----~~~~~~~~a~~~l~~l~~~~g~-----------~~~p~l~~ll~~ll~~~ls~~l~ 418 (1874)
+++..+++.+...... ...+....++.+|..+++.... .+.|++..+++.++..-.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~----- 402 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQ----- 402 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 3455566666555543 1223345788899988874321 123333333333322100
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc-hhHHHHHHhhccc-ccCC
Q 000196 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS-APVQLALQTLARF-NFKG 496 (1874)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Al~~L~~~-~f~~ 496 (1874)
.|.- . + + . ... .++.++- +....+.++|..+ ...|
T Consensus 403 ---------~p~~--~--~--~---~-----------------------~~~--~de~~~~~~~r~~~~~~L~~~~~~~~ 439 (963)
T 2x19_B 403 ---------FPSD--E--E--Y---G-----------------------FWS--SDEKEQFRIYRVDISDTLMYVYEMLG 439 (963)
T ss_dssp ---------CCCH--H--H--H---H-----------------------TSC--HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCc--c--c--c---c-----------------------CCC--hhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000 0 0 0 0 000 0000000 0011122222222 0112
Q ss_pred CcchhhHHHHHhhhc----cCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcC
Q 000196 497 HDLLEFARDSVVLYL----DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVAD 572 (1874)
Q Consensus 497 ~~l~~~v~~~~~~~l----~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d 572 (1874)
....+.+.+.+...+ ++.++..|.+|..+++.+...... . ..+.+..+++.+. .+.+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--------------~---~~~~l~~l~~~l~--~l~~ 500 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--------------N---YSDVVPGLIGLIP--RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--------------S---CCSHHHHHHHHGG--GSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--------------h---hhHHHHHHHHHHH--hCCC
Confidence 122233333333333 556788898887777776532110 0 1123445554332 3455
Q ss_pred CChhHHHHHHHhccCCCCcchhhc-c----HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHH
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT 647 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~ 647 (1874)
+++.||.+++..++ +|..++. . +.+++.++..++| +.|+..|..++.++++.++..+.|++..++..+..
T Consensus 501 ~~~~vr~~~~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 501 SNVQLADTVMFTIG---ALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp CSHHHHHHHHHHHH---HTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78889999999885 4434332 1 3467888888877 78999999999999999888888999887666555
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHH---HHHHHHHHHHHHhccc--
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGII---SGVLVTVGDLARVGGF-- 721 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~---~~~~~~l~~La~~~g~-- 721 (1874)
.+...+.+.+.+....++++.++...+ +.+.||+..+++.+...+..-.....++..+ ...+.+++.++...+.
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~ 655 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISH 655 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 554421245778888999999998876 7888999999999988876411001133332 3556777777766542
Q ss_pred --------------------chhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 000196 722 --------------------GMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1874)
Q Consensus 722 --------------------~~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1874)
.+.++...++|.+...+.. ..+..+.+.+...++.++...|..+.|| .|.+++.++.
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l~~ 733 (963)
T 2x19_B 656 HEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGR 733 (963)
T ss_dssp CC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHHHH
T ss_pred ccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccccc--HHHHHHHHHH
Confidence 2566888999998888753 3345788999999999999888877787 4788888877
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHH
Q 000196 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAIN 860 (1874)
Q Consensus 781 ~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~ 860 (1874)
.......+ ..+.+++.+.. -|.. . + .+. +...+ +...++.
T Consensus 734 ~~~~~~~~----~~l~l~~~li~--~f~~--~----~-----------------~~~----------~~~~~-~l~~~~~ 773 (963)
T 2x19_B 734 MYSTIPQA----SALDLTRQLVH--IFAH--E----P-----------------AHF----------PPIEA-LFLLVTS 773 (963)
T ss_dssp HHHHSCCH----HHHHHHHHHHH--HHTT--C----T-----------------TTC----------HHHHH-HHHHHHH
T ss_pred HHHcCCcc----HHHHHHHHHHH--HhCC--C----c-----------------chH----------HHHHH-HHHHHHH
Confidence 66543222 34455544321 0000 0 0 000 00000 1134455
Q ss_pred HHHHHcc-CC-CchhhHHHHHHHHHHHHHHhCCCC--CCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHH------
Q 000196 861 SLMRILR-DP-SLASYHQKVVGSLMFIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI------ 929 (1874)
Q Consensus 861 ~Ll~iL~-d~-s~~~~~~~v~~al~~i~~~~~~~~--~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~------ 929 (1874)
.++.++. +. +..++....+..+..+++.....+ .|. +..+++.++..++..+......++..+..++..
T Consensus 774 ~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 853 (963)
T 2x19_B 774 VTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVES 853 (963)
T ss_dssp HHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCH
T ss_pred HHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHH
Confidence 5555554 32 224555566777777777655443 255 888999999888876655566666666666643
Q ss_pred HHHhHHHhHHHHHHHHHHhhc
Q 000196 930 VRQHIRKYLQELFSLISELWS 950 (1874)
Q Consensus 930 ~~~~i~~y~~~i~~~i~~~~~ 950 (1874)
+.+.+.+|.+.++..+.....
T Consensus 854 ~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 854 VGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp HHHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 233445677777766666554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=171.70 Aligned_cols=428 Identities=13% Similarity=0.087 Sum_probs=276.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---------
Q 000196 604 IFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------- 674 (1874)
Q Consensus 604 L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------- 674 (1874)
++..+.+++.++|..|-..|..+...++ |.+-..+.+.+ .+++.+...|..|+.+|..+++...
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~----~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENL----PTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCh----HHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3344556677778777777777554321 11222222222 2221345677777777777764320
Q ss_pred --ccccc-chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc-chhhHHHH
Q 000196 675 --RLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-AVTKREVA 750 (1874)
Q Consensus 675 --~~~~p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~-~~~~r~~A 750 (1874)
..+.+ ....|-..+++.+.+. ++.+ ..+..+++.++...+.. ...++++|.+++.+++.. +...|+.|
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 11111 1233555667777664 4456 67788899998875431 245889999999998753 57899999
Q ss_pred HHHHHHHHhhc-cccccccccchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCC
Q 000196 751 VSTLGQVVQST-GYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASD 828 (1874)
Q Consensus 751 ~~~Lg~l~~~~-~~~i~p~~~~p~ll~~Ll~~l~~~~-~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~ 828 (1874)
+.+|+.+++.. +..+.++ .+.+++.++..+++++ ++.+|.+++++++.+.. +... .
T Consensus 151 l~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~---~~~~-~---------------- 208 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE---FTKA-N---------------- 208 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT---TTHH-H----------------
T ss_pred HHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HHHH-h----------------
Confidence 99999999876 4434444 3679999999998764 78999999999987631 1100 0
Q ss_pred CCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCcc-chhHHHHHH
Q 000196 829 SGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHT 907 (1874)
Q Consensus 829 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~-~ilp~ll~~ 907 (1874)
. ....+...+++.|...+.+++. .....+++++..+....+..+.+|++ .+++.++..
T Consensus 209 ----------~----------~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 209 ----------F----------DKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp ----------H----------TSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred ----------h----------hhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000123355666666666543 55668899999999888777789999 999999998
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchh
Q 000196 908 VRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPV 987 (1874)
Q Consensus 908 l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~ 987 (1874)
+++.++.++..++..++.++..... + .. ......... ++ .. .....-+++|++.
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~--------~----~~-~~~~~~~~~-~~----~~--------~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMD--------L----AI-EASEAAEQG-RP----PE--------HTSKFYAKGALQY 321 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHH--------H----HH-HHCCTTCSS-SC----SS--------CCCCCHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHH--------H----HH-hcccccccC-CC----cc--------chhHHHHHHHhhh
Confidence 8887777887777766666543210 0 00 111000000 00 00 0111234568899
Q ss_pred hHHHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc--
Q 000196 988 ILPCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-- 1061 (1874)
Q Consensus 988 llp~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~-- 1061 (1874)
++|.+++.+.+.+. ..+......+..++..++..+ +..+..++|.+...+.. ....+|.+|+.++|.++.+.+
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTT
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHH
Confidence 99999998864321 111222223334444433333 34556677777777754 478999999999999998643
Q ss_pred -ccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc--ccchhhHHHHHHh
Q 000196 1062 -VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF--TIFIPSIHKLLLK 1116 (1874)
Q Consensus 1062 -~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f--~~~ip~i~~~l~~ 1116 (1874)
+.++++.+++.+++.+.++++.+|..|..+|+.++..+|..+ .+|++.+.+.+.+
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999998876 4788888887764
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-14 Score=177.56 Aligned_cols=380 Identities=13% Similarity=0.094 Sum_probs=262.8
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhcccc--
Q 000196 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVAL-- 101 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~-- 101 (1874)
+.+++.++.+++.+.++ |...|..+- .+....|+..+...+ .++ .+...|..|...+..++....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~--------~~~~~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hhChHHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchH
Confidence 56788888888655555 544444432 112333444344322 222 367788889899998875420
Q ss_pred ----------CcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCcchHHHHHHHHHHHhhhcCCC-cch
Q 000196 102 ----------GENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLRGDR-VEY 168 (1874)
Q Consensus 102 ----------~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~--g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1874)
.-........-+.|...+. ..+..+ +.++.+++.++... ...++++++.++.. +.++. ++.
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~----l~~~~~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVAN----VTNPNSTEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHH----HHCTTCCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHH----hccCCCCHH
Confidence 0011111122334444453 345677 99999999999862 23677776665554 44432 668
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
.|.+|+.+++.+++.. |..+.++++.+++.+..++.|+ ++.||.+|+.+++.++..+....... .+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~~l~~~l~ 223 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE--SERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence 8999999999999976 7788999999999999999998 79999999999998765443211100 01122344444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC------------
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------------ 312 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~------------ 312 (1874)
..+.++ +.+++.+++.+++.+....++++.+++. .+++.++....+.++.||..++..+..++...
T Consensus 224 ~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445454 4788999999999999988888888888 89888888888899999999999999887642
Q ss_pred --------hhhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCC
Q 000196 313 --------RDRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1874)
Q Consensus 313 --------~~~f~~~yl~~~~~~Ll~~L~~~---------~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~ 375 (1874)
...+++.|++.++|.++..+... ..|..|..+++.++...|+ ..++.+++.+.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSS
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCC
Confidence 12356668899999999888542 2377999999999999985 456788888888886654
Q ss_pred CCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhC
Q 000196 376 GKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSA--GLSTTLV----DALEQITVSI 428 (1874)
Q Consensus 376 ~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~--~ls~~l~----~~l~~i~~~~ 428 (1874)
.+.+..++.++|.+++..++ .+.++++.++|.++.. .-++.++ .++..+++.+
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 44456899999999986553 4677888888887764 2344443 3555555544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-11 Score=172.60 Aligned_cols=420 Identities=13% Similarity=0.167 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccchHHHHHHHHHHh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARL 692 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l 692 (1874)
..|..+-.+|..++...|..+.+.+.+.+.+.+ ..+..+++.++.++.++|.+++.+... -.++++.+++.++...
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l---~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQI---DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---TSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 457777888888887776655555444443332 222257899999999999998766543 2355677777766532
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc-------
Q 000196 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI------- 765 (1874)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i------- 765 (1874)
......+..+.++..++.++|..+...... ..|++.+++.+++.|.+. +..++..|..+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 210000013445556788888877654332 468889999999998875 57899999999999999877543
Q ss_pred -cccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccC
Q 000196 766 -TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLW 844 (1874)
Q Consensus 766 -~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 844 (1874)
.||. ++++..+..++..- +..-....++++|.+....|....... -+. .+
T Consensus 583 ~~p~~--~~il~~l~~~~~~~-~~~~~~~~~eai~~ii~~~~~~~~~~~---------------------~~~----~l- 633 (1049)
T 3m1i_C 583 SEPFI--QTIIRDIQKTTADL-QPQQVHTFYKACGIIISEERSVAERNR---------------------LLS----DL- 633 (1049)
T ss_dssp SSCHH--HHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHHTCCSHHHHHH---------------------HHH----HH-
T ss_pred CCcHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHcCCCHHHHHH---------------------HHH----HH-
Confidence 2664 68899888888653 344456677888876432221000000 000 00
Q ss_pred CCCCCCccchHHHHHHHHHHHc----cCCCc---hh---hHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcc
Q 000196 845 PSFATSEDYYSTVAINSLMRIL----RDPSL---AS---YHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1874)
Q Consensus 845 ~~~~~~~~~~~~~vi~~Ll~iL----~d~s~---~~---~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~ 914 (1874)
...++..+-.++ .+++. .+ .-...++++..+++.+|..+.|+++.+++.++..++... .
T Consensus 634 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~ 702 (1049)
T 3m1i_C 634 ----------MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-S 702 (1049)
T ss_dssp ----------THHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-H
T ss_pred ----------HHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 011222222222 11111 01 112345677788888999888888888877765544321 0
Q ss_pred hhHHHHHHHHHHH--HHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHH
Q 000196 915 LKDYITWKLGTLV--SIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCC 992 (1874)
Q Consensus 915 ~~~~~~~~l~~lv--~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~l 992 (1874)
..+.....-|... .-....++...+.+..++..+.... .+++..+.||++.++..+
T Consensus 703 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~----------------------~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA----------------------RNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC----------------------SCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000111222222322222221110 122334678888888888
Q ss_pred HHhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHh----hcC--CCcHHHHHHHHHHHHhhccc-c----
Q 000196 993 IQVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRL----FKV--DAPVDIRRAAIETLTRLIPR-V---- 1060 (1874)
Q Consensus 993 l~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~----~~~--~~~~~vr~~ai~~l~~l~~~-~---- 1060 (1874)
+..+.+.....+....+.++..+. .+|..+.+|+..+++.+... +.. +..+++|+..+..++.++.. .
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 887754211111123455555554 37877778887777766544 332 24688999999999998764 1
Q ss_pred cccc-hhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000196 1061 QVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALG 1100 (1874)
Q Consensus 1061 ~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g 1100 (1874)
.+.+ ....+++..+..+..+++++.++++..+..++...+
T Consensus 841 ~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 841 ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 1223 256778888888988889999999999999998865
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-09 Score=151.16 Aligned_cols=590 Identities=10% Similarity=0.080 Sum_probs=318.6
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li 97 (1874)
..+....+.++++.+-+++.+.++ |-..|..+ .-+++.... +... +.++.+...|..|...+...+
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~------~~~p~~~~~----l~~i---L~~s~~~~vr~~aa~~Lk~~i 77 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKF------QDNPDAWQK----ADQI---LQFSTNPQSKFIALSILDKLI 77 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHSTTGGGG----HHHH---HHHCSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHH------HhCchHHHH----HHHH---HhhCCCHHHHHHHHHHHHHHH
Confidence 346677888888888887654444 43333322 122332221 2221 123567778888888888887
Q ss_pred ccccCc----chhHHHH-HHHHHHhhcccCC-----ChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCc
Q 000196 98 DVALGE----NASKVSK-FSNYMRTVFEVKR-----DREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRV 166 (1874)
Q Consensus 98 ~~~~~~----~~~~~~~-~~~~L~~~l~~~~-----d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~ 166 (1874)
...-.. ....++. ..+++...-+ .. +..++...+.++..++.. ....|+++++.++..+ + .+
T Consensus 78 ~~~W~~l~~~~~~~ir~~ll~~l~~~~~-~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~--~~ 150 (1049)
T 3m1i_C 78 TRKWKLLPNDHRIGIRNFVVGMIISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S--SS 150 (1049)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHH-CHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T--TC
T ss_pred HhhCccCCHHHHHHHHHHHHHHHHhhCC-ccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c--cC
Confidence 543111 1222332 2333333221 11 367899999999999987 3457888877776654 2 23
Q ss_pred chhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHhhcc
Q 000196 167 EYRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 167 ~~~r~aA~~~l~~la~~~p----------------~~~~~~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
...+..++.+|+.+++-.. ..|..+++.+++.+...+.+. ++.+|.+|.+++..++..+....
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~ 230 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY 230 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 3457788888888886432 335677888888888888654 57899999999988876543111
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-hhh---hHHHHHHHHHHHHHHh---------------
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT-GEF---MMSRYREVAEIVLRYL--------------- 290 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~-~~~---~~~~~~~i~~~ll~~~--------------- 290 (1874)
.....++..+++.+.. +.+.+.+|+.++.+++... ++. ....+..++..++..+
T Consensus 231 -~~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~ 303 (1049)
T 3m1i_C 231 -IYETNILELLSTKFMT------SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATY 303 (1049)
T ss_dssp -HHSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred -HhhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHh
Confidence 0112344444433322 2577889999999988742 221 2223333333333211
Q ss_pred ---hcchhHHHHHHHHHhHhHhhhCh------hhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhc------h
Q 000196 291 ---EHRDRLVRLSITSLLPRIAHFLR------DRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGAL------D 353 (1874)
Q Consensus 291 ---~~~~~~vr~~~~~~i~~la~~~~------~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~alg~la~~v------~ 353 (1874)
++.+..+.+.++.++..+...-. ..+ ..++..++++++.+...+++ +..++.-...++... .
T Consensus 304 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~ 382 (1049)
T 3m1i_C 304 ANANGNDQSFLQDLAMFLTTYLARNRALLESDESL-RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKK 382 (1049)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCG
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhh-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 12234444555555544432111 112 23567788888877655421 345555555555522 1
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHH--HHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 000196 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRG--LLDIMFSAGLSTTLVDALEQITVSIPSL 431 (1874)
Q Consensus 354 ~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~--ll~~ll~~~ls~~l~~~l~~i~~~~p~l 431 (1874)
..+.++++.+++.+...+.-.. +... +. ..-|+.|.++.++ -. .. ...+.+++..++...|
T Consensus 383 ~~~~~~l~~Lv~~ll~~m~~~e-d~~~--~~------dd~~e~~r~~~~d~d~~-~~-----~~~~~~~L~~l~~~~~-- 445 (1049)
T 3m1i_C 383 HIYEEICSQLRLVIIENMVRPE-EVLV--VE------NDEGEIVREFVKESDTI-QL-----YKSEREVLVYLTHLNV-- 445 (1049)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCT-TCCE--EE------CTTSCEEECSSCCHHHH-HH-----HHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-ceee--ee------CCCCcchHhhhccchHH-HH-----HHHHHHHHHHHHccCH--
Confidence 2345677777777666553211 1000 00 0011222111100 00 00 0001122222211100
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhc
Q 000196 432 LPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYL 511 (1874)
Q Consensus 432 ~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l 511 (1874)
....+++.+.+..++
T Consensus 446 -----------------------------------------------------------------~~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 446 -----------------------------------------------------------------IDTEEIMISKLARQI 460 (1049)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence 000111112222222
Q ss_pred c--CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh----cCCChhHHHHHHHhc
Q 000196 512 D--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV----ADADVTVRHSIFSSL 585 (1874)
Q Consensus 512 ~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~----~d~~~~vR~~~l~~l 585 (1874)
. +.++..|.+|..+++.+...... ......+..+++.|+...- .|+.+.||..++..+
T Consensus 461 ~~~~~~W~~~eaal~algsia~~~~~----------------~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 461 DGSEWSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp TSSSCCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCc----------------hhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 2 23556666666665544321000 0011234555555443211 135566665666666
Q ss_pred cCCCCcchhhc-c----HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc--------hHHHHHHHHHHHHHhhC
Q 000196 586 YGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL--------PALRRHLIQLLTYLEQS 652 (1874)
Q Consensus 586 ~~~~~f~~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~--------p~l~~~l~~~l~~l~~~ 652 (1874)
+ +|..++. + +.+++.++..++|+++.||..|..++.++++.++..+. |++..++..+...+..
T Consensus 525 g---ry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~- 600 (1049)
T 3m1i_C 525 G---QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD- 600 (1049)
T ss_dssp H---HCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-
T ss_pred H---HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-
Confidence 4 3333321 1 34567777889999999999999999999998775543 8888766555544433
Q ss_pred CCChHhHHHHHHHHHHHHHhCc--cccccchHHHHHHHHHHhhccC-----CCC--CChh---HHHHHHHHHHHHHHhcc
Q 000196 653 SADNKCREESAKLLGCLIRNCE--RLIRPYIAPIHKALVARLLEGT-----GIN--ANNG---IISGVLVTVGDLARVGG 720 (1874)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~--~~~~py~~~il~~ll~~l~~~~-----~~~--~~~~---v~~~~~~~l~~La~~~g 720 (1874)
-+.+......++++.++...+ +...+|+..+++.++..+.... ..+ .++. .....+.+++.++...|
T Consensus 601 -~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 601 -LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp -SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556677889999998876 3577888888887766543210 000 0111 12355678888889999
Q ss_pred cchhhcHHhHHHHHHHHHh
Q 000196 721 FGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 721 ~~~~~~~~~llp~l~~~l~ 739 (1874)
..+.|+++.+++.++..++
T Consensus 680 ~~f~p~~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 680 ADFYPQLGHIYYNMLQLYR 698 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888877665554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-09 Score=137.44 Aligned_cols=673 Identities=11% Similarity=0.063 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHcCCC--Cchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhc
Q 000196 23 LDALNRILADLCTHG--NPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELID 98 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~--~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~ 98 (1874)
+.-+++.|+=+.+.. .+++ +|+.-|-- .+||-.+-. .-|-+.-+.++.+++++ ++.+...+|+..+..+..
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~v----l~re~aga~-~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVV----LAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHH----HSSCHHHHH-HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhcee----eeccccchH-HHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 456777888776543 2333 47554433 345532221 11223345677888876 788899999999999987
Q ss_pred cccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCcc------h-------HHHHHHHHHHHhhhc
Q 000196 99 VALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMT------A-------DEVEFQVKMALDWLR 162 (1874)
Q Consensus 99 ~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~--~g~~~------~-------~~v~~~~~~~~~~l~ 162 (1874)
.........+..+ .+++..++. +.+.++...++.++..+..+ |+... . .-+...+..+++-+.
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLD-QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 6311111111111 246666664 56888889999888877653 32221 1 123344555555554
Q ss_pred CCCc-chhHHHHHHHHHHHHhhcCccchh----ch-HHHHHHHHHh---hcCC--------chhHHHHHHHHHHHHHHHH
Q 000196 163 GDRV-EYRRFAAVLILKEMAENASTVFNV----HV-AEFVDAIWVA---LRDP--------TLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 163 ~~~~-~~~r~aA~~~l~~la~~~p~~~~~----~l-~~il~~i~~~---l~D~--------~~~VR~aA~~al~~~~~~i 225 (1874)
+.+- ...|-+++.+ +..+.|..-.. ++ ..=+..++.. +-+. .+..|..|.-++..+.+.+
T Consensus 159 ~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 159 DRTISGAARDGVIEL---ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp CTTSCHHHHHHHHHH---HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred ccccChhhHHHHHHH---HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 4332 3556666655 45555542110 10 0011222221 2232 4678999998888877654
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
. ....+..+...+-+-+...+..++ .+..-.|.-++..++.+..+.-..-+ +..++.++.++.+.++.+++.+++
T Consensus 236 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~ 312 (810)
T 3now_A 236 Y--YDEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312 (810)
T ss_dssp C--SHHHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred c--cchhHHHHHHHHHHHHHHHhccCC-hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHH
Confidence 4 112233333333333444454443 45556667778777775554333322 246778888889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh--hhhh----hHHHHHHHHHhhcCC-
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE--LFHY----LPTITSHLREAIAPR- 374 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~--~~p~----l~~i~~~l~~~L~~~- 374 (1874)
+++.+|.- + ...+.....-++.|...+++.. .|..|..+|..++...+.+ ..++ +..+++.++..|...
T Consensus 313 al~~aa~~-~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~ 390 (810)
T 3now_A 313 CLIAASSK-K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG 390 (810)
T ss_dssp HHHHHTTS-H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCC-c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC
Confidence 99997653 2 2222122223488888887543 3667888888887543311 1122 456778888888655
Q ss_pred -CCCCCchhHHHHHHHHHHhCCCchHH-H--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 375 -RGKPSLEALACVGNIARAMGPVMEPH-V--RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 375 -~~~~~~~a~~~l~~l~~~~g~~~~p~-l--~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
+.+....+..+++.++. ++..... + ..++|.|+.. +. . + .+.++.+.+..+..+..+.
T Consensus 391 ~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~L---------L~----s-~--d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 391 KDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDL---------AR----G-G--NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp CCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHH---------HH----T-T--CGGGHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHH---------hC----C-C--ChHHHHHHHHHHHHHcCCc
Confidence 33344567888877754 2222211 1 1344444321 11 0 0 1244455555555544332
Q ss_pred CCCCCCCCCCCCCCCc--cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHH
Q 000196 451 HYSQARPAATPIRGNV--MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCK 528 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~ 528 (1874)
.-. .+.+....-... ...+. ....++.+....=++.+..- | +-..+..++.++++.+|..|+.+++.
T Consensus 453 d~q-~~~~~l~~la~~s~~~v~~-~~~ld~~~~v~~r~~~Vvea---G------aVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 453 EKQ-EMLPEMIELAKFAKQHIPE-EHELDDVDFINKRITVLANE---G------ITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp CCC-CCCCSCGGGTTTTCCSCCC-SSCHHHHHHHHHHHHHHHHT---T------HHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhh-hhhHHHHHHHHHhhccCcc-ccccccHHHHHHHHHHHHHC---c------CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 110 000000000000 00000 00000000000000000000 1 00122344555566666666655555
Q ss_pred hhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHh
Q 000196 529 LVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL 608 (1874)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l 608 (1874)
+... .+.|..++ +...++.|+..+
T Consensus 522 LA~d------------------------------------------~~~r~~Vv--------------~~Gaip~Lv~LL 545 (810)
T 3now_A 522 VCGL------------------------------------------KELRGKVV--------------QEGGVKALLRMA 545 (810)
T ss_dssp HHTS------------------------------------------HHHHHHHH--------------HTTHHHHHHHHH
T ss_pred HcCC------------------------------------------HHHHHHHH--------------HCCCHHHHHHHH
Confidence 4310 00111111 123567777778
Q ss_pred CCCCHHHHHHHHHHHHhhhcC-CcCccch--HHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH-HH
Q 000196 609 NDEDFDVREYAISVAGRLSEK-NPAYVLP--ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA-PI 684 (1874)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~-~p~~v~p--~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~i 684 (1874)
.+.++.+|+.|..+|++++.. +|..+.+ .....+..++.-+..+ .+...+..|+++|..++....+.....+. ..
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~ 624 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESVRQRIIKEQG 624 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 788889999999999998764 5543322 1123344444433332 34445568999999998764322111111 34
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
++.|+..+.+. ++.++..++.+|+.|+.. .+....++ ...+|.++..+... +...|..|+++|+.++.+..
T Consensus 625 l~~Lv~LL~s~-----~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 625 VSKIEYYLMED-----HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHHHHHHSC-----CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCH
Confidence 56666666654 678999999999998752 22334444 25788888888754 67899999999999987533
Q ss_pred ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
..+.........++.|+.+|+++ +.+++..++.+++.+..
T Consensus 698 ~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 698 KCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 22111111135788888888765 78999999999988754
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-09 Score=145.28 Aligned_cols=435 Identities=12% Similarity=0.096 Sum_probs=247.7
Q ss_pred HHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHh---hCCCChHhHHHHHHHHHHHHHhCccc------cccchHHHH
Q 000196 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE---QSSADNKCREESAKLLGCLIRNCERL------IRPYIAPIH 685 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~---~~~~~~~~r~~a~~~L~~l~~~~~~~------~~py~~~il 685 (1874)
.|.....++..++...|..+++++-..+...+.... .+ .+++.+|.++.+|+.+++.+... ..++++.++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~-~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPE-NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455444455555555666666633333444443321 12 35888999999999999987542 225666677
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH--HHhcCcchhhHHHHHHHHHHHHhhccc
Q 000196 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE--ALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 686 ~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~--~l~d~~~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
+.+...+..+.....++.|+..++.++|..+...... ..|++.+++.+++ .+.+. +..+|..|..+|..+++.++.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhH
Confidence 6666665532212347889999999999888765432 3577777887777 66654 467999999999999999998
Q ss_pred cccccccchHHHHHHHHHhcCC----CCH----------------HHHHHHHHHHHHhc-ccC-ccchhhhcccCCCccc
Q 000196 764 VITPYNEYPQLLGLLLKMLNGE----LVW----------------STRREVLKVLGIMG-ALD-PHAHKRNQQLSGSHGE 821 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~----~~~----------------~vr~~al~~lg~lg-ald-p~~~~~~~~~~~~~~~ 821 (1874)
.+.||. +.++..+..+|... ... +-+...+.++|.+- +.. |.-.+ .
T Consensus 571 ~L~~~~--~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~-~--------- 638 (980)
T 3ibv_A 571 QVVNYT--ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ-A--------- 638 (980)
T ss_dssp TCSSSH--HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-H---------
T ss_pred HhhhHH--HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-H---------
Confidence 888875 57888887777521 111 12333555666542 211 11000 0
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCccchHHHH----HHHHHHHccCCCch-----hhHHHHHHHHHHHHHHhCCC
Q 000196 822 VTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA----INSLMRILRDPSLA-----SYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v----i~~Ll~iL~d~s~~-----~~~~~v~~al~~i~~~~~~~ 892 (1874)
.|...+ +..+-..+...... ..| ..+.|+..+.+.....
T Consensus 639 -------------------------------~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~-~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 639 -------------------------------LYCDSLINALIGKANAALSSDLSALENIISVY-CSLMAIGNFAKGFPAR 686 (980)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH-HHHHHHHHHHHTSCSC
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHhccCCcc
Confidence 011111 12222223211111 122 3466667776654322
Q ss_pred ------CCCCccchhHHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccch
Q 000196 893 ------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964 (1874)
Q Consensus 893 ------~~~~l~~ilp~ll~~l~~--~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~ 964 (1874)
+...+.++++.++..+.. .+..+|+.+...+..++..+|..+.||+|+++..+........ ..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---------~~ 757 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---------LV 757 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---------HH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---------HH
Confidence 122345677777777764 3456899999999999999999999999999999886554332 12
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHh----cccccccCc--hh---hHH---HHHHHHHH--Hhcch-h----hh
Q 000196 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQV----LSDAERCND--YT---YVL---DILHTLEV--FGGTL-D----EH 1025 (1874)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~----l~~~~~~~~--~~---~~~---~il~~l~~--~g~~~-~----~~ 1025 (1874)
..+.+++.+....+.++.+.+..+++++++. |+.++...| |. ..- ..++++.. +++.+ . .+
T Consensus 758 ~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~ 837 (980)
T 3ibv_A 758 DVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVY 837 (980)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHH
Confidence 6789999999999999888888888776653 433221111 11 111 12222221 11211 1 22
Q ss_pred hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---c----ccchhHhHHHHHHHHhCCCCHHHH--------HHHHH
Q 000196 1026 MHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---Q----VTGHISSLVHHLKLVLDGKNDELR--------KDAVD 1090 (1874)
Q Consensus 1026 ~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~----~~~~~~~ii~~l~~~l~~~~~~l~--------~~al~ 1090 (1874)
+..++-.++.....-.....++.|+..+.+++..- + |..|+-.+++....+..+++-+++ ..+..
T Consensus 838 l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~ 917 (980)
T 3ibv_A 838 FDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAG 917 (980)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Confidence 33334444433222245678899999999987752 1 444433355555555544433333 33444
Q ss_pred HHHHHHHHhcccccc
Q 000196 1091 ALCCLAHALGEDFTI 1105 (1874)
Q Consensus 1091 ~L~~l~~~~g~~f~~ 1105 (1874)
++-.+..+.|..|..
T Consensus 918 ~~k~~~~~~g~~~~~ 932 (980)
T 3ibv_A 918 LQKIILEKLGDIYKS 932 (980)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHH
Confidence 455555555655433
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-10 Score=151.58 Aligned_cols=498 Identities=11% Similarity=0.107 Sum_probs=297.6
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1874)
+-+-|.+.....++.+...++..+..|-+ ++..++.++..+.++++.+|+.+..++..+... .++.
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--------~~e~ 83 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------QPDM 83 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--------SHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--------CchH
Confidence 33444444445566666666666555532 223455566788999999999999998876542 1233
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 237 ~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
...+.+.+...+.+++ ..+|..|+.+++.+ ....+.+ .+++.+...+.++++.||+.++.++..++...++..
T Consensus 84 ~~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i---~~~~~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPN-PLIRALAVRTMGCI---RVDKITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHTTHHHHGGGSSSSS-HHHHHHHHHHHHTC---CSGGGHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---ChHHHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 3445567777788764 56677766555543 2222333 345567777889999999999999999998777643
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 317 VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
.+ +..++.+...|.+++ .|..|+.+++.++..-++. ..+..+..+..+...+.+.++-.+..++.++ ..+
T Consensus 157 ~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l----~~l 229 (591)
T 2vgl_B 157 ED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL----SNY 229 (591)
T ss_dssp HH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----HTS
T ss_pred cc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHH----HHh
Confidence 21 467888888887544 4788999999987665432 2233344444444444322110111233333 334
Q ss_pred CCCchHHHHHHHHHHHhc--CCCHH-HHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000196 394 GPVMEPHVRGLLDIMFSA--GLSTT-LVDALEQITVSI------PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1874)
Q Consensus 394 g~~~~p~l~~ll~~ll~~--~ls~~-l~~~l~~i~~~~------p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1874)
++.-.+....+++.+... ..++. ..++...+..-. |.....+.+++...+...+.
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---------------- 293 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---------------- 293 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc----------------
Confidence 443334555666666543 12233 334555554322 22222222332222211110
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccc
Q 000196 465 NVMNIPQQVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFG 543 (1874)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~ 543 (1874)
.+......|+++|+.+. ..+..+.+++.. +....++ +..||+.|...+..+....
T Consensus 294 ------------~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~-~~~~~~d-~~~Ir~~al~~L~~l~~~~---------- 349 (591)
T 2vgl_B 294 ------------GEPEVQYVALRNINLIVQKRPEILKQEIKV-FFVKYND-PIYVKLEKLDIMIRLASQA---------- 349 (591)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT-TSCCTTS-CHHHHHHHHHHHHHTCCSS----------
T ss_pred ------------CCccHHHHHHHHHHHHHHhChHHHHHHHHh-heeccCC-hHHHHHHHHHHHHHHCChh----------
Confidence 12335577888888772 223333343332 2222233 4899999987776654210
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHH
Q 000196 544 ASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1874)
Q Consensus 544 ~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1874)
-+..++..|.. ...+.|.++|..++.+++. +..|.+. ...+++.|+..+.|....|+..++..
T Consensus 350 -------------nv~~iv~~L~~-~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 350 -------------NIAQVLAELKE-YATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp -------------THHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHH
Confidence 14556666654 3578899999999888852 1233211 24578899999999999999999999
Q ss_pred HHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 623 l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
++.+...+|......+. .+...++.. .++..+..++|+||+.+...++ .+.+++.++..+.+. ++
T Consensus 414 l~~ii~~~p~~~~~~v~----~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~-----~~ 478 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIA----TLCENLDSL-DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDE-----ST 478 (591)
T ss_dssp HHHHHHHSCSSCCTTHH----HHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSS-----CH
T ss_pred HHHHHHHCcchHHHHHH----HHHHHHHhc-cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccC-----CH
Confidence 99999888864211111 222233444 5677888999999988766543 345666666555443 67
Q ss_pred hHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHH-hcCcchhhHHHHHHHHHHH
Q 000196 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-LDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l-~d~~~~~~r~~A~~~Lg~l 757 (1874)
.++..++.++..+....++.. ...+..+++.. .|..+.++|+-|...++-+
T Consensus 479 ~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 889888999888877655433 23444444543 4655778999988776654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-11 Score=153.72 Aligned_cols=428 Identities=14% Similarity=0.103 Sum_probs=263.5
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
+.+.+-+++++...|..|+.++..+.. +.....+.+.+..++. +.++.|++.|+.+++++..... +.++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p----~~~~ 157 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINA----QMVE 157 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSC----CCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhCh----hhcc
Confidence 345556677788778777777766631 2234455667888886 5789999999999999998532 2333
Q ss_pred --HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhc
Q 000196 152 --FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1874)
Q Consensus 152 --~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~-~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1874)
..++.+.+.|. +.+...|.+|+.+|.+++...|.. .....+..++.++..+.|.++..+....++++.+ ...
T Consensus 158 ~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l----~~~ 232 (591)
T 2vgl_B 158 DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY----NPK 232 (591)
T ss_dssp HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS----CCC
T ss_pred cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh----CCC
Confidence 35566666664 666788999999999999988865 4556677788888888888888776666555432 111
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc---chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN---TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~---~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
+ ......+++.+...+.+.+ ..++..|+.++..+... ..+.+......+...++... ++++.||..++.++
T Consensus 233 ~----~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 D----DREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNI 306 (591)
T ss_dssp S----HHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred C----hHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHH
Confidence 1 1234567777777777664 57888888887776532 23444444455555555433 47899999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhH
Q 000196 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1874)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~ 383 (1874)
..++...++.|.+ ++..+ . ++.+.. .|..|+..++.++..- -++.+++.+.+.+.+.+...+..+.
T Consensus 307 ~~i~~~~p~~~~~-~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 307 NLIVQKRPEILKQ-EIKVF----F-VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHHHCCSTTTT-CTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHhChHHHHH-HHHhh----e-eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998877665432 22211 1 111211 3567777777765322 2456777777777554333345788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000196 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATP 461 (1874)
Q Consensus 384 ~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~ 461 (1874)
.+++.++..+++....+++.+++.+-..+ ...+...++..+....|.....+...+.+.+.
T Consensus 375 ~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~----------------- 437 (591)
T 2vgl_B 375 RAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD----------------- 437 (591)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT-----------------
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH-----------------
Confidence 89998887765445556666665543332 22233445666666667654433333322210
Q ss_pred CCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccc
Q 000196 462 IRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541 (1874)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~ 541 (1874)
+..+.+....++.+||+|...-..-.+.++.. ..-+.+.++.||.++..++.+++...+..
T Consensus 438 -------------~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l-~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----- 498 (591)
T 2vgl_B 438 -------------SLDEPDARAAMIWIVGEYAERIDNADELLESF-LEGFHDESTQVQLTLLTAIVKLFLKKPSE----- 498 (591)
T ss_dssp -------------TCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH-STTCSSSCHHHHHHHHHHHHHHHTTCCST-----
T ss_pred -------------hccCHHHHHHHHHHHHcccccccCHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHhcCchH-----
Confidence 11133345778899999832111111222222 22233457899999999999998643310
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHhcC-CChhHHHHHHHhc
Q 000196 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVAD-ADVTVRHSIFSSL 585 (1874)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d-~~~~vR~~~l~~l 585 (1874)
....+..++..+..| +|++||..+...+
T Consensus 499 ----------------~~~~i~~ll~~~~~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 499 ----------------TQELVQQVLSLATQDSDNPDLRDRGYIYW 527 (591)
T ss_dssp ----------------THHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhhcCCChHHHHHHHHHH
Confidence 123344555555555 6788888877665
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-10 Score=150.90 Aligned_cols=394 Identities=10% Similarity=0.125 Sum_probs=242.6
Q ss_pred ChHhHHHHHHHHHHHHHh------CccccccchHHHHHHHHHHhhccCC------CCC--------ChhHH---HHHHHH
Q 000196 655 DNKCREESAKLLGCLIRN------CERLIRPYIAPIHKALVARLLEGTG------INA--------NNGII---SGVLVT 711 (1874)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~------~~~~~~py~~~il~~ll~~l~~~~~------~~~--------~~~v~---~~~~~~ 711 (1874)
+.+.-..++.....+++. ....++|++..++..++.++.-+.. ... +.+-. ...-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 334334566666666642 2345778888889999888876531 000 11110 112256
Q ss_pred HHHHHHhcccchhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHhcC----C
Q 000196 712 VGDLARVGGFGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNG----E 785 (1874)
Q Consensus 712 l~~La~~~g~~~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~l~~----~ 785 (1874)
|..++...|.+ .+..+++.+.+.+.. ..++..|++|+.++|.++++.... .+++ .|++++.|++++.. +
T Consensus 437 L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~--l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH--HHHHHHHHHHhhhccccCc
Confidence 66666665543 334445555555543 247999999999999998765432 2333 47889988888753 1
Q ss_pred CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHH
Q 000196 786 LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865 (1874)
Q Consensus 786 ~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~i 865 (1874)
....+|..++.++|...- +.. ...+ |...+++.|+..
T Consensus 512 ~k~~v~~t~~~~lGry~~---wl~---------------------------------------~~~~-~L~~vl~~L~~~ 548 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPR---FLK---------------------------------------AHWN-FLRTVILKLFEF 548 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHH---HHH---------------------------------------HCHH-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH---HHh---------------------------------------ccHH-HHHHHHHHHHHH
Confidence 223455666677776421 110 0012 346778889999
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHhCCCC--------CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH--hHH
Q 000196 866 LRDPSLASYHQKVVGSLMFIFKSMGLGC--------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ--HIR 935 (1874)
Q Consensus 866 L~d~s~~~~~~~v~~al~~i~~~~~~~~--------~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~--~i~ 935 (1874)
|.|+.. ....+++.|+..|...++..+ .||+++++..+...+..-++..+..++.++|.++..++. ...
T Consensus 549 l~~~~~-~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~ 627 (1023)
T 4hat_C 549 MHETHE-GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERN 627 (1023)
T ss_dssp TTCSCH-HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hhcCCH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence 876642 356689999999998876443 479999999888888766667778889999999987753 345
Q ss_pred HhHHHHHHHHHHhhcCCC-----CCcc----cccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000196 936 KYLQELFSLISELWSSFS-----LPAT----NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~-----~~~~----~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~ 1006 (1874)
.++..+++.+.+.|+... .|.- ........++++...++.++|..|.||+..++|.++++.+..
T Consensus 628 ~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~------- 700 (1023)
T 4hat_C 628 RLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAV------- 700 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------
Confidence 688888888887776421 0000 001122456888888999999999999999999998887531
Q ss_pred hHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHH----HHhCCCC
Q 000196 1007 YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLK----LVLDGKN 1081 (1874)
Q Consensus 1007 ~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~----~~l~~~~ 1081 (1874)
...+-.++..-|.....+- .++. -..+|+..++.+...+.. .+.......++++++ .--....
T Consensus 701 -s~~i~~~~~~~g~~~~~~~------~~r~-----~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 701 -SSMISAQVAAEGLIATKTP------KVRG-----LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp -HHHHHHHHHHHCGGGGGSH------HHHH-----HHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHhCCchhhccH------HHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 1112233333343332210 1111 123555666655544332 232223333444443 3223334
Q ss_pred HHHH-HHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1082 DELR-KDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1082 ~~l~-~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
++.| ...++++..++.++|..+.+.+|.|...+..
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~ 804 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555 5678999999999999988899998888765
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-10 Score=149.28 Aligned_cols=429 Identities=14% Similarity=0.087 Sum_probs=253.3
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~ 152 (1874)
.+.+++.+++...|.-|-+++..+..-. +....-..+.+.+-+. +.++.++..|.+++|.+.. +++++.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~------~~~~~~ 142 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLN-HSTQFVQGLALCTLGCMGS------SEMCRD 142 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHS-CSSSHHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCC------HHHHHH
Confidence 3456778889988888888888886542 2233445677777775 5688999999999999863 456666
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1874)
.++.+...|. +++...|.+|+.++..+....|+.+. .+++.+...|.|+++.|+.+|..++..+... .+..
T Consensus 143 l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~----~~~~ 213 (618)
T 1w63_A 143 LAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER----SPDM 213 (618)
T ss_dssp HHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS----HHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh----ChHH
Confidence 6666666665 45668899999999999999998654 5566667888999999999999998876421 1100
Q ss_pred HHHHHHHHHHHHHhhcc---------------CCCChhHHHHHHHHHHHHHHcchh---hhH------------------
Q 000196 233 RVQWYYRMFEATQDGLG---------------RNAPVHSIHGSLLAVGELLRNTGE---FMM------------------ 276 (1874)
Q Consensus 233 ~~~~~~~i~~~~~~~l~---------------~~~~~~~~~~al~~l~~ll~~~~~---~~~------------------ 276 (1874)
...+..+.+.+...|. .+++|- +...+.+++.+....++ .+.
T Consensus 214 -~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 214 -LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL-QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH-HHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 1122222222222111 011222 11222233222211100 000
Q ss_pred ----------------HHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--C
Q 000196 277 ----------------SRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--E 337 (1874)
Q Consensus 277 ----------------~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~ 337 (1874)
+.+ ......+..++.++++.||..++.++..++...+..|. .| ...++.++.+++ .
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-~~----~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-RH----RSTIVDCLKDLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-GG----HHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-HH----HHHHHHHccCCChhH
Confidence 111 12333444555666777777777777777765444322 22 334445555433 3
Q ss_pred cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCH
Q 000196 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LST 415 (1874)
Q Consensus 338 R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~ 415 (1874)
|..|+++++.++..- . ++.+++.+.+.+.+.+.+.+..++.+++.++..+.+.+..|++.+++.+-..+ ...
T Consensus 367 r~~alelL~~l~~~~--n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 367 KRRAMELSFALVNGN--N----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHHCCSS--S----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHHcccc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH
Confidence 666777776665421 1 23344444444433332334578999999999988888889999887766544 455
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc-
Q 000196 416 TLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF- 494 (1874)
Q Consensus 416 ~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f- 494 (1874)
+....+.++....|.+...+...+.+.+..- .........++.+||+|..
T Consensus 441 ~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~-----------------------------~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 441 DAVPNLIQLITNSVEMHAYTVQRLYKAILGD-----------------------------YSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC-----------------------------CSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-----------------------------cccHHHHHHHHHHHhhhHHH
Confidence 5677888888888988877777776665410 0011133468899999831
Q ss_pred -C-C-------Ccch-hhHHHHHhhhcc--CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHH
Q 000196 495 -K-G-------HDLL-EFARDSVVLYLD--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1874)
Q Consensus 495 -~-~-------~~l~-~~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1874)
. | .... ..+.+.+..++. ..++.||.++..++.++....+. . .+.+
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------------------~----~~~l 549 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------------------T----VNRI 549 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------------------C----HHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------------------h----HHHH
Confidence 0 0 0000 111222222332 45789998888888888764321 1 2233
Q ss_pred HHHHHHHhcCCChhHHHHHHHhc
Q 000196 563 EKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
..++.....|+|.+||..+...+
T Consensus 550 ~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 550 KKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444445666777776665544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-11 Score=156.32 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=234.9
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH--HHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE--ELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
..+.++++.+|..|+.++.+++..... ......+. .+++.|+.....+.++.+|..++.+|.
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~----------------~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPN----------------PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLT 90 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSS----------------CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCC----------------CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445677899999999999988642110 00122222 466666665444448999999888874
Q ss_pred CCCCcc----hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHH
Q 000196 587 GNRGFD----DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 587 ~~~~f~----~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
.-.... ..+.....++.++..+++++++||..|+.+|+.++...+..-...+. ..+..++..+..+ .+...|..
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHH
Confidence 200000 11223457899999999999999999999999999876532111111 1122233334433 56788999
Q ss_pred HHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHh
Q 000196 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1874)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~ 739 (1874)
|+++|+.++... +..-..++..+++.++..+.+. ++.++..++.+++.++....+...... ..++|.++..|.
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 999999999765 3333344567778888888764 678888999999988764322221111 357888999888
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..+|..|+.+|+.++...+........ ..+++.|+.+++++ ++.+|.++++++|.++.-.+...+
T Consensus 245 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~--------- 312 (450)
T 2jdq_A 245 HN-DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ--------- 312 (450)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 6789999999999998765432111111 35888999999765 789999999999988642211100
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l-- 897 (1874)
.....-+++.|+..|++++. ..+..++.++.++..........++
T Consensus 313 --------------------------------~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 313 --------------------------------TVIDANIFPALISILQTAEF-RTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp --------------------------------HHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011346677788876643 4566788888888765322222222
Q ss_pred cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 ~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..++|.++..++..++.++..++..|+.++....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3589999999998888899999999988887544
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=138.38 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=160.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++++|..|.+|+..|..+++++|....+.+..+++.+...+. |++..||.+|+.+++.+...+.. .-..+...++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----RFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG----GGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Confidence 468899999999999999999888766778899999999995 99999999999999999876542 2245788899
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh-hhChhhHHHHH
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA-HFLRDRFVTNY 320 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la-~~~~~~f~~~y 320 (1874)
+.+...+++++ ..+|.++..++..+....+ ++.+++.++..++++++.||..++..|+.++ .+.++.+...|
T Consensus 101 p~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 101 PSLLEKFKEKK-PNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 99999999875 6889999999999987542 4678888889999999999999999999965 44455444568
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHH
Q 000196 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i 363 (1874)
++.++|.+...|.+.. .|..|+.++|.++..+|.+ +.+|++.+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999996543 6899999999999999986 77888664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-11 Score=148.99 Aligned_cols=357 Identities=11% Similarity=0.055 Sum_probs=239.8
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCC-ChhhhhhHHHHHhHhhcccc
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESN-DAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~~ 101 (1874)
+..+++.|++.+.+.+ .|+..|+.++.. +.++. ....+. .+.+.+.++++++ +...|..++.++..+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPP-IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCC-HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCc-HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 7788999988764444 588888887621 11211 222222 3566666777776 78889999999998876421
Q ss_pred CcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
......+ ....+.|..++. +++.+++..|+++|+.++.........+++ ..++.++..+.++.+...|..|+.+|+.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1111111 134567777775 568999999999999998752111111222 2466666677655667889999999999
Q ss_pred HHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChhHH
Q 000196 180 MAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 180 la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
++.+. |..-...+..++|.+...+.++++.+|..|+.+|+.+.... ....... -..+++.+...+.++ +++++
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHN-DYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS----HHHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC----cHHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence 99876 65444556888999999999999999999999998765321 1111111 124667777777665 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP 335 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~ 335 (1874)
..++.+|+.+....++.....++ .+++.++..+++.++.+|+.++.+++.++...+.. .+..+ ..+++.++..|+++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-IQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhcC
Confidence 99999999988755433222222 36778888888999999999999999999755433 22233 36778888888654
Q ss_pred C--CcchHHHHHHHHHhhch-hhhhhhh-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 336 A--ERDSGFIALGEMAGALD-GELFHYL-PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 336 ~--~R~~a~~alg~la~~v~-~~~~p~l-~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
+ .|..|..+|+.++.... ..+...+ ..+++.+.+.+.+.+.+.+..++.+++.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3 57899999999987532 2232233 347778888886654444567888888888753
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=137.54 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=163.7
Q ss_pred CCCcchhHHHHHHHHHH-HHhhcCccc--hhchHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHh-hcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKE-MAENASTVF--NVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIE-KRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~-la~~~p~~~--~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~-~r~~~~~~~~~ 237 (1874)
++++|..|.+|+..|.. +++++|... ...+..++..+...+ .|++..||.+|+.|++++.+.+. .+ +...++
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~---f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG---FSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT---SCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc---ccHHHH
Confidence 46788999999999999 999999887 566778999999999 79999999999999999886654 21 222678
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh-HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM-MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~-~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..+++.++..+++.. ..++.++..++..+.+..+... .++++.+++.++..++++++.+|..++.+|.+++...+
T Consensus 103 ~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 889999999998875 5677888888999888654322 13478899999999999999999999999999997766
Q ss_pred hhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHH
Q 000196 314 DRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1874)
Q Consensus 314 ~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i 363 (1874)
..|.. |+ +.++|.+...+...+ .|.+|+.|+|.++..+|++ +.||++.+
T Consensus 182 ~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 182 STLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred hhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45654 89 999999999997655 6999999999999999985 88888774
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-08 Score=133.88 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=166.1
Q ss_pred CChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcc
Q 000196 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFD 592 (1874)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~f~ 592 (1874)
.++..+.+|..++..+....... ... . ........+++ +++..++...+. ++.+.||.+.+..++ ++.
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~---~~~---~-~~~~~~lp~l~-~ll~~ll~s~i~~~~hp~V~~~~~~~l~---rys 523 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGP---DAF---F-NEVDKSPTVLS-QILALVTTSQVCRHPHPLVQLLYMEILV---RYA 523 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSG---GGT---B-CSSSCCBCHHH-HHHHHHHHSSTTTCCCHHHHHHHHHHHH---HTG
T ss_pred CCHHHHHHHHHHHHHHHhhcccc---ccc---c-CcccchhHHHH-HHHHHHHhCCCCCCCCHHHHHHHHHHHH---HHH
Confidence 45788888777766554321100 000 0 00011122333 444455443332 778999999999886 444
Q ss_pred hhhc-cHhh----HHHHHH--HhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhC--CCC--------
Q 000196 593 DFLA-QADC----LSAIFA--ALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS--SAD-------- 655 (1874)
Q Consensus 593 ~~L~-~~~~----l~~L~~--~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~--~~~-------- 655 (1874)
.++. ++++ ++.++. .+.+++..||..|..++.++++.++..+.|++..++..+-..+... +..
T Consensus 524 ~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~ 603 (980)
T 3ibv_A 524 SFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPT 603 (980)
T ss_dssp GGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCC
T ss_pred HHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccc
Confidence 4442 2344 455555 5667888999999999999999999888898887554332222211 000
Q ss_pred ---------hHhHHHHHHHHHHHHHhCc---cccccchHHHHHHHHHHhhccCC--CCC-Chh-HHHHHHHHHHHHHHhc
Q 000196 656 ---------NKCREESAKLLGCLIRNCE---RLIRPYIAPIHKALVARLLEGTG--INA-NNG-IISGVLVTVGDLARVG 719 (1874)
Q Consensus 656 ---------~~~r~~a~~~L~~l~~~~~---~~~~py~~~il~~ll~~l~~~~~--~~~-~~~-v~~~~~~~l~~La~~~ 719 (1874)
.+.+-.-.+++|.++...+ +....|+..++..++..+..... ... +.. -....+.++|.+++..
T Consensus 604 ~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 604 LNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 1124456778888887743 34456777777777776553210 000 111 2235678889998754
Q ss_pred ccc------hhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH
Q 000196 720 GFG------MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1874)
Q Consensus 720 g~~------~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~ 792 (1874)
.+. +...+.+.++.++..+.. ..+..+|+.+..++.+++...|..+.|+. |.+++.++...+.. +. .
T Consensus 684 ~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~l--p~~i~~ll~~~~~~---e~-~ 757 (980)
T 3ibv_A 684 PARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKV--PQLISILLNSIDMN---EL-V 757 (980)
T ss_dssp CSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTH--HHHHHHHHHHCCTT---TH-H
T ss_pred CcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHH--HHHHHHHHhcCCHH---HH-H
Confidence 321 455677888888777763 34577999999999999999999888875 78888888654433 22 3
Q ss_pred HHHHHHHHh
Q 000196 793 EVLKVLGIM 801 (1874)
Q Consensus 793 ~al~~lg~l 801 (1874)
..+.++|.+
T Consensus 758 ~fL~l~~ql 766 (980)
T 3ibv_A 758 DVLSFISQL 766 (980)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666665
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-09 Score=136.29 Aligned_cols=472 Identities=13% Similarity=0.100 Sum_probs=266.2
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1874)
++..+++..-+. |.-+.+.+..+++..|+.+ .-++..+.+.|.|+++.||..|..+++.+. . .+.
T Consensus 75 vik~~~s~~~~~-Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~------~----~~~ 139 (618)
T 1w63_A 75 CLKLIASQKFTD-KRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG------S----SEM 139 (618)
T ss_dssp HHHHHHSSSHHH-HHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC------C----HHH
T ss_pred HHHHHcCCchHH-HHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC------C----HHH
Confidence 444444544444 4445556677766554432 245667778999999999999999988652 1 134
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 237 ~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
...+++.+...+.+++ ..+|.+|+.++..+....++.+. .+.+.+...+.++++.|+.+++.++..++..+++.
T Consensus 140 ~~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~- 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM- 213 (618)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-
Confidence 5677788888888774 68899999999999887666553 23444555667899999999999999998766542
Q ss_pred HHHHHHHHHHHHHHhhcC----C-----------C--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCC
Q 000196 317 VTNYLKICMNHILTVLRI----P-----------A--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~----~-----------~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~ 379 (1874)
.+ ++..++|.+...|.+ . . .+...+++++.++..-+. .
T Consensus 214 ~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~----------------------- 268 (618)
T 1w63_A 214 LA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-S----------------------- 268 (618)
T ss_dssp HH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-H-----------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-H-----------------------
Confidence 22 334555655555432 0 0 112333333333221100 0
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCH--H-HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 000196 380 LEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLST--T-LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456 (1874)
Q Consensus 380 ~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~--~-l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~ 456 (1874)
.+.+.+++..++...- ..-+. . +.++.+.+.. +..
T Consensus 269 --------------~~~~~~~L~~l~~~~~-~~~~~~~aV~~ea~~~i~~-l~~-------------------------- 306 (618)
T 1w63_A 269 --------------SEAMNDILAQVATNTE-TSKNVGNAILYETVLTIMD-IKS-------------------------- 306 (618)
T ss_dssp --------------HHTTHHHHHHHHHTSC-CSSTHHHHHHHHHHHHHHH-SCC--------------------------
T ss_pred --------------HHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHh-cCC--------------------------
Confidence 0111222222211100 00000 0 0011111100 000
Q ss_pred CCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCC
Q 000196 457 PAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSG 536 (1874)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~ 536 (1874)
+......|.+.| ..++.+.++++|..|..+++.+....+
T Consensus 307 ---------------------~~~l~~~a~~~L------------------~~~L~~~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 307 ---------------------ESGLRVLAINIL------------------GRFLLNNDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp ---------------------CHHHHHHHHHHH------------------HHHHTCSSTTTHHHHHHHHHHHHHHHH--
T ss_pred ---------------------CHHHHHHHHHHH------------------HHHHhCCCCchHHHHHHHHHHHHhhCH--
Confidence 000011122222 233555667888888777777764322
Q ss_pred CcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcchhhccHhhHHHHHHHhCCCCH
Q 000196 537 VSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFDDFLAQADCLSAIFAALNDEDF 613 (1874)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~f~~~L~~~~~l~~L~~~l~D~~~ 613 (1874)
..+......++. .+.|++..||..+++.|.. ...+ ..+++.+...+.+.+.
T Consensus 346 -------------------~~~~~~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 346 -------------------NAVQRHRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEP 399 (618)
T ss_dssp -------------------HHHGGGHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCH
T ss_pred -------------------HHHHHHHHHHHH-HccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCH
Confidence 111111222222 4578888888888887631 1111 2356666677777889
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
++|..++..+++++...+.....++. .++..+... + ...+.++...+..+++..++. -..++..+...+.
T Consensus 400 e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~-~-~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~ 469 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTA-G-SYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHT-G-GGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhc-c-chhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHh
Confidence 99999999999999987654333333 333333333 2 234445667777888776542 2345566666666
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhccc----c---hhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccc
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGF----G---MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVI 765 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~----~---~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i 765 (1874)
+.. ....+...++.++|+.+..... . +...-..+++.+...+.. ..+..+|..++.+++++....+.
T Consensus 470 ~~~---~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 470 GDY---SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HCC---SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred ccc---ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 532 1334455678899998764321 0 011122344555554432 34678999999999998876532
Q ss_pred cccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 766 ~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
. .+.+..++.....+.+.++|..|...+..+..
T Consensus 545 ----~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 545 ----T-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ----C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ----h-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1 23444555555566689999999988877653
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-07 Score=125.86 Aligned_cols=778 Identities=11% Similarity=0.104 Sum_probs=402.3
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCc
Q 000196 108 VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AST 186 (1874)
Q Consensus 108 ~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~ 186 (1874)
+..+...+..+..+ +.+.++.|-+.|..+-..++... .+...|....+...|+.|+..|+..... ...
T Consensus 15 v~~Le~av~~ly~p--~~~~r~~A~~~L~~~q~sp~aw~---------~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 15 IALLDQVVSTFYQG--SGVQQKQAQEILTKFQDNPDAWQ---------KADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCTTGGG---------GHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCccHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 44555666666654 34588888888988877654322 1233333344567888888888876653 322
Q ss_pred cchhchHHHHHHHHHhh----cCC-----chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 187 VFNVHVAEFVDAIWVAL----RDP-----TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l----~D~-----~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
.=......+-..++..+ .+| .+.||..-+.++..++. ++-. ..| +.+++.+...+..+ ....
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~----~~~p--~~W-p~~l~dL~~~l~~~--~~~~ 154 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILK----QEWP--QNW-PEFIPELIGSSSSS--VNVC 154 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHH----HHTT--TTC-TTHHHHHHHHTTTC--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH----HhCh--hhc-hHHHHHHHHHhcCC--HHHH
Confidence 21222233333333333 343 24555556666555443 2210 123 34566666656543 3456
Q ss_pred HHHHHHHHHHHHcc-----h-----------hhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 258 HGSLLAVGELLRNT-----G-----------EFMMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 258 ~~al~~l~~ll~~~-----~-----------~~~~~~~~~i~~~ll~~~~-~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
...+.+|..|.+-. . +.|...++.++..+...++ ..++.+..+++.++.....|.+-..+-
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-- 232 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-- 232 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc--
Confidence 66677776665521 1 1344556666665555554 356778888999999988887754321
Q ss_pred HHHHHHHHH-HhhcCCCCcchHHHHHHHHHh-hc-hh--hhh----hhhHHHHHHH-HHhh----------cCCCCCCCc
Q 000196 321 LKICMNHIL-TVLRIPAERDSGFIALGEMAG-AL-DG--ELF----HYLPTITSHL-REAI----------APRRGKPSL 380 (1874)
Q Consensus 321 l~~~~~~Ll-~~L~~~~~R~~a~~alg~la~-~v-~~--~~~----p~l~~i~~~l-~~~L----------~~~~~~~~~ 380 (1874)
-..+++.++ ..|..++.|..|.+||..++. .. +. .+. ..++.+++.+ ...+ .... ....
T Consensus 233 ~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-~~D~ 311 (1023)
T 4hat_C 233 ETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-GNDQ 311 (1023)
T ss_dssp SSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-TTHH
T ss_pred chhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-cchH
Confidence 146778888 777777789999999999876 22 22 122 2233444444 2211 1111 1112
Q ss_pred hhHHHHHHHHHHhCC----------CchHHHHHHHHHHHhcC-CC-HHH----HHHHHHHHHhCC---CChHHHHHHHHH
Q 000196 381 EALACVGNIARAMGP----------VMEPHVRGLLDIMFSAG-LS-TTL----VDALEQITVSIP---SLLPTIQDRLLD 441 (1874)
Q Consensus 381 ~a~~~l~~l~~~~g~----------~~~p~l~~ll~~ll~~~-ls-~~l----~~~l~~i~~~~p---~l~~~i~~~ll~ 441 (1874)
..+..++.+...+|+ .+.+.+..++..|+.+. .. .+. .+.+..+.+.+- .......+-+.+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 334444444433332 22344444455666642 22 222 234444443221 111111111222
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCccCCCccc-c----ccCCchhHHHHHHhhccc-ccCCCcchhhHHHHHhhhccC--
Q 000196 442 CISFVLSKSHYSQARPAATPIRGNVMNIPQQV-S----DLNGSAPVQLALQTLARF-NFKGHDLLEFARDSVVLYLDD-- 513 (1874)
Q Consensus 442 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~Al~~L~~~-~f~~~~l~~~v~~~~~~~l~~-- 513 (1874)
.+...+.+-.+.+ ..... .+..+++ . +.++.+.-...=++|... ...+..+.+.+.+.+...+.+
T Consensus 392 L~~vli~km~~P~----e~~iv---e~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~ 464 (1023)
T 4hat_C 392 LRLVIIENMVRPE----EVLVV---ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1023)
T ss_dssp HHHHHHHSCCCCT----TCCEE---ECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHhcCCCc----ccccC---CCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC
Confidence 2222233322211 00000 0000001 0 001100000000233221 111111222222222223333
Q ss_pred CChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhc----CCChhHHHHHHHhccCCC
Q 000196 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA----DADVTVRHSIFSSLYGNR 589 (1874)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~----d~~~~vR~~~l~~l~~~~ 589 (1874)
.++..|.||.-+++.+...... ....+.+..+++.|+...-. |+...||.+++-.++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~----------------~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG--- 525 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG--- 525 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCCCc----------------hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH---
Confidence 5799999998888877532110 01245667777766654321 455667777777775
Q ss_pred Ccchhhc-cH----hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc--------chHHHHHHHHHHHHHhhCCCCh
Q 000196 590 GFDDFLA-QA----DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--------LPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 590 ~f~~~L~-~~----~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--------~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
++-+++. ++ .++..|+..++|+++.|+..|..++..+++.+...+ .|++..++..+..... . -+.
T Consensus 526 ry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-~-l~~ 603 (1023)
T 4hat_C 526 QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-D-LQP 603 (1023)
T ss_dssp TCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-T-SCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-h-CCH
Confidence 4444443 22 356778888899999999999999999999776443 4677765544444333 2 456
Q ss_pred HhHHHHHHHHHHHHHhCccc--cccchHHHHHHHHHHhhccC-----CCC--CC---hhHHHHHHHHHHHHHHhcccchh
Q 000196 657 KCREESAKLLGCLIRNCERL--IRPYIAPIHKALVARLLEGT-----GIN--AN---NGIISGVLVTVGDLARVGGFGMR 724 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~--~~py~~~il~~ll~~l~~~~-----~~~--~~---~~v~~~~~~~l~~La~~~g~~~~ 724 (1874)
..+....++++.++++.+.. ...|+..+++.+...+..-. .+. .+ ......++.|++.++...|..+.
T Consensus 604 ~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~ 683 (1023)
T 4hat_C 604 QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY 683 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 77788999999999987632 44567767766665544210 000 01 12345678888899999999999
Q ss_pred hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cc
Q 000196 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM-GA 803 (1874)
Q Consensus 725 ~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l-ga 803 (1874)
|++..++|.+++..+--+ ..+...+...|..+. +.| .+.. + ..+|+++++.+... +.
T Consensus 684 ~~~~~i~~~~l~~y~~~s---------~~i~~~~~~~g~~~~---~~~-~~r~----~-----r~ik~~il~l~~~~i~~ 741 (1023)
T 4hat_C 684 PQLGHIYYNMLQLYRAVS---------SMISAQVAAEGLIAT---KTP-KVRG----L-----RTIKKEILKLVETYISK 741 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCGGGG---GSH-HHHH----H-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhCCchhh---ccH-HHHH----H-----HHHHHHHHHHHHHHHhc
Confidence 999999999887765321 122222333343221 112 2221 1 24777788877552 10
Q ss_pred cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHH
Q 000196 804 LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLM 883 (1874)
Q Consensus 804 ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~ 883 (1874)
.+ +.... ...+. .-++..++.--.+......+..+.....
T Consensus 742 ~~-----------------------------~~~~~----------~~~~~-~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 742 AR-----------------------------NLDDV----------VKVLV-EPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp CS-----------------------------CHHHH----------HHHTH-HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred CC-----------------------------CHHHH----------HHHhH-HHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 00 00000 00011 1122222222222222233467888888
Q ss_pred HHHHHhCCCCCCCccchhHHHH----HHHhc---CCcchhHHHHHHHHHHHHHHHHhHHH----hHHHHHHHHHHhhcCC
Q 000196 884 FIFKSMGLGCVPYLPKVLPDLF----HTVRT---CDDYLKDYITWKLGTLVSIVRQHIRK----YLQELFSLISELWSSF 952 (1874)
Q Consensus 884 ~i~~~~~~~~~~~l~~ilp~ll----~~l~~---~~~~~~~~~~~~l~~lv~~~~~~i~~----y~~~i~~~i~~~~~~~ 952 (1874)
.|+..+|..+.|.++.++..+. ..+.+ ..|+.|..+|..+..++...-..+-. .+..+++.+.-..+..
T Consensus 782 ~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~ 861 (1023)
T 4hat_C 782 TVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN 861 (1023)
T ss_dssp HHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 8999999887777777777664 34543 34678999998888877655333322 3344444443333322
Q ss_pred CCCcccccccchhHHHHHHHHHHH-----hhhhhhccchhhHHHHHHhccccc
Q 000196 953 SLPATNRTYRGLPVLHLVQQLCLA-----LNDEFRTHLPVILPCCIQVLSDAE 1000 (1874)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~-----l~~~f~~yl~~llp~ll~~l~~~~ 1000 (1874)
. .+.....+. .+..++..+... ...-++.|.-.++..++.++.+..
T Consensus 862 ~-r~~~~~~l~-~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 862 N-RDVEVNGLQ-IALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp C-HHHHHHHHH-HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred c-hHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1 110000011 223334444332 122345788888888888887644
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=154.44 Aligned_cols=356 Identities=12% Similarity=0.101 Sum_probs=235.1
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCC-ChhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA-DVTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~-~~~vR~~~l~~l 585 (1874)
...+.++++.+|..|+.++.+++...... ....++ ..+++.|+.. +.++ ++.+|..++.+|
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~----------------~~~~~~~~g~i~~Lv~~-L~~~~~~~v~~~A~~~L 155 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRP----------------PIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWAL 155 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSC----------------SHHHHHHTTCHHHHHHT-TSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHCCCHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 34567778999999999999887532100 011111 2455666654 4555 899999888887
Q ss_pred cCCCC----cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 586 YGNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 586 ~~~~~----f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
..-.. ....+.....++.|+.++.+++.+||..|+.+|+.++...|..-...+..-.+..+..+..+ .+...+..
T Consensus 156 ~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 234 (530)
T 1wa5_B 156 TNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRT 234 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHH
Confidence 52011 11122234568888899999999999999999999998764321111111112223333334 56788999
Q ss_pred HHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHh
Q 000196 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALL 739 (1874)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~ 739 (1874)
|+++|+.++... +..-......+++.|+..+.+. ++.++..++.+|+.++...++.....+. .++|.++..|.
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 999999999765 3333334556778888888764 6889999999999998654433333333 67899999998
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..+|..|+.+|+.++...+....... -..+++.|+.+|+++ ++.+|.+++.+|+.++.-.+...+.
T Consensus 310 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~-------- 378 (530)
T 1wa5_B 310 HE-STLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQA-------- 378 (530)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH--------
T ss_pred CC-ChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHH--------
Confidence 75 678999999999999865433211111 135888999999765 7899999999999987432211000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCC--CCCCCc
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL--GCVPYL 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~--~~~~~l 897 (1874)
+...-+++.|+..|.+++. .....++.++.++....+. ....++
T Consensus 379 ---------------------------------~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 379 ---------------------------------VIDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp ---------------------------------HHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred ---------------------------------HHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 0011235567777766543 4566788888888876433 222233
Q ss_pred --cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 --~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..++|.++..+...++.++..++..|..++....
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3489999999988888889999888888876554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-08 Score=131.30 Aligned_cols=360 Identities=12% Similarity=0.053 Sum_probs=219.2
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC--ChhHHHHHH
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA--DVTVRHSIF 582 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~--~~~vR~~~l 582 (1874)
..+..++.+.++.+|.-|+.++|++-...........+ ....+..+++.|.... .++ |+++|..++
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~-----------~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~Av 400 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF-----------GDGAALKLAEACRRFL-IKPGKDKDIRRWAA 400 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS-----------TTTHHHHHHHHHHHHH-HCSSCCSSHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch-----------hhccHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 34445666777899999999999985311000000000 1112444455554433 344 888999888
Q ss_pred HhccC---CCCcchhh-ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-c-----------------------
Q 000196 583 SSLYG---NRGFDDFL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-V----------------------- 634 (1874)
Q Consensus 583 ~~l~~---~~~f~~~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v----------------------- 634 (1874)
.+|.. ....-..+ .....++.|+..+..++..++..|..+|+.++...+.. .
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 88741 11100112 12457888999998888999999999999999854210 0
Q ss_pred chHHH---HH-----HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH--HHHHHHHHHhhccCCCCCChhH
Q 000196 635 LPALR---RH-----LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA--PIHKALVARLLEGTGINANNGI 704 (1874)
Q Consensus 635 ~p~l~---~~-----l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~--~il~~ll~~l~~~~~~~~~~~v 704 (1874)
....+ +. .+..|..+..+ +++..+++|+++|+.++.. ++ .+..+- ..++.|++.+++. .+..
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~-----~~~~ 552 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEG-----TEKG 552 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSS-----CHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccC-----CHHH
Confidence 00111 11 12334444455 6789999999999999853 22 222221 3677788888764 5677
Q ss_pred HHHHHHHHHHHHHhcccch--hh-cHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 705 ISGVLVTVGDLARVGGFGM--RQ-YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 705 ~~~~~~~l~~La~~~g~~~--~~-~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
+..++.+|+.++....+.. .. .....+|.++..|....+...+..|+.+|+.++........-... ...++.|..+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~L 631 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYY 631 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHH
Confidence 8889999999886543322 11 234578899988864333345567999999998764211000000 1346667777
Q ss_pred hcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHH
Q 000196 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINS 861 (1874)
Q Consensus 782 l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~ 861 (1874)
+.++ ++.++++|+++++.+..-+....+ . .. ..-+++.
T Consensus 632 L~s~-~~~Vq~~A~~~L~NLa~~~~~~~~-~---------------------------v~-------------~~g~l~~ 669 (810)
T 3now_A 632 LMED-HLYLTRAAAQCLCNLVMSEDVIKM-F---------------------------EG-------------NNDRVKF 669 (810)
T ss_dssp HHSC-CTTHHHHHHHHHHHHTTSHHHHHH-H---------------------------HS-------------SSSHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChHHHHH-H---------------------------Hh-------------ccCcHHH
Confidence 7654 678999999999988542211100 0 00 0124667
Q ss_pred HHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 862 LMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 862 Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
|+..++.++. .....++.|+.++.......+...+ ...+|.++..+++.+..++..+.+.++.++.
T Consensus 670 Lv~LL~s~d~-~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 670 LALLCEDEDE-ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHGGGCSSH-HHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8888876543 4566778888888762111111112 4688999999999888899988888877764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-10 Score=149.73 Aligned_cols=360 Identities=12% Similarity=0.055 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCC-hhhhhhHHHHHhHhhcc
Q 000196 23 LDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESND-AAENLGALRAIDELIDV 99 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~-~~~r~~~i~ai~~li~~ 99 (1874)
.+.+..+++.|.+.+.+.+ .|+..|+.++.. +- .+...... ..+.+.+.+++++++ ...|..|+.++..+...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~---~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSI---ER-SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---SS-SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CC-CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3458899999988764444 477777776521 11 11111111 234666777887776 88899999999999764
Q ss_pred ccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHH
Q 000196 100 ALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLI 176 (1874)
Q Consensus 100 ~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~ 176 (1874)
.. +....+. ...+.|..++. +.+.+++..|+++|+.|+..+......+++ ..++.++..|..+.+...|..|+.+
T Consensus 149 ~~-~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 149 TS-ENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 21 1111111 24566777775 468999999999999998642111111221 2466777777656667888999999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChh
Q 000196 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 177 l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~ 255 (1874)
|..++.+.|..-...+..+++.+...|.++++.||..|+.+|+.+... ........ -..+++.+...+.+++ ..
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~-~~ 301 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVELLLHPS-PS 301 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHHHTTCSC-HH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHHHHcCCC-hh
Confidence 999999877655566788999999999999999999999999876532 11111111 1246677777777764 68
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcc-hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHR-DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~-~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
++..|+.+|+.+.....+.....+ ..+++.++..+.+. ++.||+.++.+|+.++...+.....-+-..+++.|...|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 899999999998875443332222 23567777788888 9999999999999999755543222122367788888886
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 334 IPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
... .|..|+.+|++++.........++ ..+++.+...+...+.+....++.+++.|+...
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 543 478999999999877444444554 356777888886654444456788888887654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-11 Score=137.05 Aligned_cols=195 Identities=15% Similarity=0.165 Sum_probs=147.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~ 153 (1874)
+.+.+++++|.+|.+|+.++..++....+.......++.+.|...+..+.+..|+..|+.+++.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~---------------- 83 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLAL---------------- 83 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH----------------
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----------------
Confidence 4566789999999999999999988732211122344555555555212345555555555554
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1874)
++.+.+..|.+|+..++|.|+..++|+++.||++|..|+..++....
T Consensus 84 --------------------------la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 84 --------------------------LAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp --------------------------HHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------
T ss_pred --------------------------HHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------
Confidence 44444467899999999999999999999999999999998865321
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 234 ~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
+..+++.+..++.+. ++.++..++.+++.++...+ .+..+++..+++.++..++++++.||.++..+++.++..
T Consensus 131 ---~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 ---LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 456778888888876 48999999999999887543 367889999999999999999999999999999999876
Q ss_pred ChhhHHHHHH
Q 000196 312 LRDRFVTNYL 321 (1874)
Q Consensus 312 ~~~~f~~~yl 321 (1874)
.+.+....|+
T Consensus 207 vg~~~~~~~l 216 (242)
T 2qk2_A 207 MGDKAVTPLL 216 (242)
T ss_dssp HCHHHHGGGG
T ss_pred cCHHHHHHHH
Confidence 6554333343
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-11 Score=153.73 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=236.8
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhH-HHHHHHHHHHHHHhcCCC-hhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR-LIEELVEKLLIAAVADAD-VTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l 585 (1874)
+..+.++++.+|..|+.++++++...... .... .-..+++.|+... .+++ +.+|..++.+|
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~----------------~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L 142 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSP----------------PIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWAL 142 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSC----------------CHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCc----------------hHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 45567778999999999999887532100 0111 1224566666654 4454 99999888877
Q ss_pred cC---C-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHH
Q 000196 586 YG---N-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCRE 660 (1874)
Q Consensus 586 ~~---~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~ 660 (1874)
+. . ......+.....++.|+..+.+++.+||..|+.+|+.++...|..-...+. ..+..++..+..+ .+...+.
T Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~ 221 (528)
T 4b8j_A 143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLR 221 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHH
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHH
Confidence 41 0 111111222347889999999999999999999999999876532111111 1223344444344 5788899
Q ss_pred HHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHh
Q 000196 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1874)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~ 739 (1874)
.++++|+.++...+..-......+++.|+..+.+. ++.++..++.+|+.++..........+ ..++|.++..|.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 99999999997754433344567788888888764 788999999999998754333222222 257899999998
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..++..|+.+|+.++............ ..+++.|+.+|+++.++.+|.+|+++|+.+.+-.+.....
T Consensus 297 ~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~-------- 366 (528)
T 4b8j_A 297 HP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA-------- 366 (528)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH--------
T ss_pred CC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH--------
Confidence 76 5789999999999998754332211111 4578888998876647899999999999886422211000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l-- 897 (1874)
.+..-+++.|+.+|.+++ ......++.++.++....+.....++
T Consensus 367 ---------------------------------~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 367 ---------------------------------VINAGIIGPLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp ---------------------------------HHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ---------------------------------HHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 001123566777776653 34566788888888776333334444
Q ss_pred cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 ~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..+++.++..+...++.++..++..|+.++....
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888888888888888876543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-10 Score=146.15 Aligned_cols=357 Identities=11% Similarity=0.063 Sum_probs=236.3
Q ss_pred HHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc
Q 000196 24 DALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESN-DAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~ 100 (1874)
..+..+++.|++.+.+.+ .|+..|+.++.. + ......... ..+.+.+.++++++ ++..|..|+.++..+....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~-~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSR---E-HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---S-SSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---C-CCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 347889999988754443 477777766521 1 111111111 23566777888886 8888999999999997642
Q ss_pred cCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 101 LGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 101 ~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
. +....+ ....+.|..++. +.+.+++..|+++|+.|+.........++. ..++.++..+.+ .+...|..|+.+|
T Consensus 163 ~-~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L 239 (530)
T 1wa5_B 163 S-AQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTL 239 (530)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHH
T ss_pred H-HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 1 111111 122455666664 458999999999999998742111111111 246666666765 5556788899999
Q ss_pred HHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChh
Q 000196 178 KEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 178 ~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~ 255 (1874)
..|+.+. |..-......+++.++..|.++++.||..|+.+|+.+... ......... ..+++.+...+.++ ++.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~Lv~lL~~~-~~~ 314 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG----PQEAIQAVIDVRIPKRLVELLSHE-STL 314 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----CHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHhcCcHHHHHHHHCCC-Chh
Confidence 9999876 6554556778899999999999999999999999887532 111111222 24667777777765 478
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhc
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLR 333 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~ 333 (1874)
++..++.+|+.+....++.....++ .+++.++..+.+.++.||..++.+|+.++...+... ..++ ..+++.|...|.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~-~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI-QAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHh
Confidence 8999999999988654433322222 467788888899999999999999999998665432 2233 357777777776
Q ss_pred CCC--CcchHHHHHHHHHhhchh--hhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 334 IPA--ERDSGFIALGEMAGALDG--ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~--~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
... .|..|+.+|+.++...+. +...++ ..+++.+...+...+.+.+..++.++..++...
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 443 478999999999876443 333333 236677777775544333456777887777653
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-07 Score=122.25 Aligned_cols=456 Identities=13% Similarity=0.094 Sum_probs=275.3
Q ss_pred HHHHHHHHHHcCCCC---chhhHHHHHHHHHHHHHh-h--hChHHHHHHHHHHH-------------HHHHhhhcCCChh
Q 000196 24 DALNRILADLCTHGN---PKEGASLALRKHIEEQAR-D--LGGEAFSRFMDQLY-------------DRISGLLESNDAA 84 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~---~~~~aa~~l~~~v~~~~~-~--~~~~~~~~~~~~l~-------------~~i~~l~~s~~~~ 84 (1874)
.-+..++++++.... +++.-..|+.++=... + + .++..-.+.+..+. -.+.+++.+++..
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~-~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~ 89 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKF-KGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYT 89 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-HSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHH
Confidence 458889999975432 2333555655543322 3 2 23332222322221 3345788899999
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-C
Q 000196 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-G 163 (1874)
Q Consensus 85 ~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~ 163 (1874)
.|..|-+++..+.... +..+.-..|.+++=+. +.++-++..|..+++.+.. +++++..++.+...|. .
T Consensus 90 ~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~-~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSN----SELIRLINNAIKNDLA-SRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAG 158 (621)
T ss_dssp HHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCS
T ss_pred HHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCC
Confidence 9999999999987553 2233444566666664 5678999999999999843 5677777777777763 4
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhh-----------
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW----------- 232 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~----------- 232 (1874)
+.+...|..|+.++..+....|+.+.+ +.+++.+...|.|+++.|+.+|..++..+...-.......
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 567788888899999999988887653 4667777788999999999999998877643210000000
Q ss_pred ----------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--------------h----------
Q 000196 233 ----------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--------------G---------- 272 (1874)
Q Consensus 233 ----------------~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--------------~---------- 272 (1874)
...|.+..+=.+...+...++.+.+..-...+..++... +
T Consensus 237 l~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~ 316 (621)
T 2vgl_A 237 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316 (621)
T ss_dssp HHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHH
Confidence 023443333233333332212222221111222222100 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc-CCC--CcchHHHHH
Q 000196 273 ----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR-IPA--ERDSGFIAL 345 (1874)
Q Consensus 273 ----~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~-~~~--~R~~a~~al 345 (1874)
.-..+.....+..+..++.++++.+|..++..+..++...+. ..++......++.+|+ +++ .|..|++.+
T Consensus 317 i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL 393 (621)
T 2vgl_A 317 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLL 393 (621)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Confidence 001123344555666667788899999999999998876542 0123344555666776 333 245666666
Q ss_pred HHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHH
Q 000196 346 GEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQ 423 (1874)
Q Consensus 346 g~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~~l~~~l~~ 423 (1874)
..++.. + -++.|+..+.+.+...+...+..+...++.++..+.+++.-|++.+++.+-..| ..++....+..
T Consensus 394 ~~l~~~--~----Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ 467 (621)
T 2vgl_A 394 YAMCDR--S----NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 467 (621)
T ss_dssp HHHCCH--H----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHH
T ss_pred HHHcCh--h----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 555422 1 345666666666644332223578899999999999899999998888776544 56666677777
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc----CCCc-
Q 000196 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF----KGHD- 498 (1874)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f----~~~~- 498 (1874)
+....|.++......+++.+. . + +. ....+..|+..+|+|.. .++.
T Consensus 468 ii~~~~~~~~~~~~~l~~~l~----~-~-----------------------~~-~~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 468 IVINRDDVQGYAAKTVFEALQ----A-P-----------------------AC-HENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHT----S-S-----------------------SC-CHHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred HHhCChhHHHHHHHHHHHHHc----C-c-----------------------cc-hHHHHHHHHHHhcchHHHhcccCCCC
Confidence 887888888877777766543 0 0 00 11234567799999831 1111
Q ss_pred chhhHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 499 LLEFARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
-.++++. +...+...++.||..+..++.+++..
T Consensus 519 p~~~l~~-l~~~~~~~~~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 519 PLIQFNL-LHSKFHLCSVPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 0123332 33334456789998888888888754
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-09 Score=141.47 Aligned_cols=489 Identities=14% Similarity=0.084 Sum_probs=277.1
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
..++.++++.||..|+.+++.+...... .... ...+++.|+.....+.++++|..++.+|
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~------------------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChh------------------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3556678899999999998887642110 0111 1346666666655667899999888877
Q ss_pred cC---CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHH
Q 000196 586 YG---NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1874)
Q Consensus 586 ~~---~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1874)
.. .......+.....++.|+..+++++..+|..|+.+|+.|+...+..-......-.+..+..+..+ ++.+.++.+
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a 296 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHH
Confidence 41 00000111223468889999999999999999999999998765421111111122233333334 467778888
Q ss_pred HHHHHHHHHhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHh
Q 000196 663 AKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALL 739 (1874)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~ 739 (1874)
+.+|..++....+.-.... ...++.|+..+++. ........++.++..|+.. . ...+.+ ...+|.++..+.
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~Ll~lL~ 370 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLT 370 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHHHGGGTT
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHHHHHHHc
Confidence 8888877743322111101 13456677777754 1344455666677777642 2 122222 246788888888
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +...+..|+++|..++...... .....+++.|+.+|+++ ++.+|..++.+|+.++.-.+......
T Consensus 371 ~~-~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~vr~~A~~aL~~L~~~~~~~~~~i------- 437 (780)
T 2z6g_A 371 DP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMV------- 437 (780)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHH-------
T ss_pred CC-chHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHH-------
Confidence 76 5678888999999998765431 23467899999999754 78999999999998864222110000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC--C--C
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--C--V 894 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~--~--~ 894 (1874)
...-.++.|+..|.+++. ......++.++.+|....+.. . .
T Consensus 438 ----------------------------------~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 438 ----------------------------------CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp ----------------------------------HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred ----------------------------------HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 001245667777765322 234455666666553211000 0 0
Q ss_pred CCccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHH--hHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQ--HIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHL 969 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~--~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 969 (1874)
-.-...+|.++..++..+. .++..++..|+.+...-.. .+. ..++.++.++.....
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------------- 544 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ------------------- 544 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH-------------------
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch-------------------
Confidence 0013458888888887765 7888888888777632111 111 112222222221100
Q ss_pred HHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHHH
Q 000196 970 VQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVDI 1045 (1874)
Q Consensus 970 i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~~~~~~~~~v 1045 (1874)
+.+.....-+.. +.+.+.. ....+...+..++..+...-. ..+ .-.+|.++.++... ...+
T Consensus 545 ----------~~~~~aa~al~n--q~~~~~~--~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v 609 (780)
T 2z6g_A 545 ----------DTQRRTSMGGTQ--QQFVEGV--RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP-IENI 609 (780)
T ss_dssp ----------HHHHTTC--------CCSTTC--CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS-CHHH
T ss_pred ----------hHHHHHhhcccc--chhhccc--ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC-CHHH
Confidence 000000000000 0010000 001122233444444332110 001 23689999999764 6789
Q ss_pred HHHHHHHHHhhcccccccchhH--hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000196 1046 RRAAIETLTRLIPRVQVTGHIS--SLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102 (1874)
Q Consensus 1046 r~~ai~~l~~l~~~~~~~~~~~--~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~ 1102 (1874)
+..|+.+|+.++........+. ..+..|...+.++++++|..|..+|+.++..-...
T Consensus 610 ~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 9999999999875422222222 25677889999999999999999999998765433
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-09 Score=138.58 Aligned_cols=486 Identities=13% Similarity=0.052 Sum_probs=265.0
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000196 195 FVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1874)
Q Consensus 195 il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1874)
.++.+...|+++++.||+.|+.+|+.+...-. .+.... ..+++.+...|.+..+.+++..|+.+|..|.....
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-----HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-----hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 46667778889999999999999998764321 121221 25667777777654456788888888887654321
Q ss_pred hhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHH
Q 000196 273 EFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGE 347 (1874)
Q Consensus 273 ~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--R~~a~~alg~ 347 (1874)
....+. ..++.++.++++.++.+|..++.+|..++........ .+. ...++.|...|++... +..+..+|+.
T Consensus 90 --~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 90 --GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp --HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred --hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 111111 3567788888899999999999999999976543221 122 5688999999987653 5567788988
Q ss_pred HHhhchhhhhhhh-HHHHHHHHHhhcCCCCC-CCchhHHHHHHHHHHhCCCchHHHH--HHHHHHHhcCCCHHHHHHHHH
Q 000196 348 MAGALDGELFHYL-PTITSHLREAIAPRRGK-PSLEALACVGNIARAMGPVMEPHVR--GLLDIMFSAGLSTTLVDALEQ 423 (1874)
Q Consensus 348 la~~v~~~~~p~l-~~i~~~l~~~L~~~~~~-~~~~a~~~l~~l~~~~g~~~~p~l~--~ll~~ll~~~ls~~l~~~l~~ 423 (1874)
++...++.-.... ...++.+...+.+.... ....+..++..++. .+.....+- ..++.|+..-
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll----------- 233 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL----------- 233 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT-----------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH-----------
Confidence 8864333211111 23455555555433211 11234455555442 222222221 1222222110
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC---Ccch
Q 000196 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG---HDLL 500 (1874)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~---~~l~ 500 (1874)
..- +......|+.+|+.+...+ ....
T Consensus 234 -----~~~----------------------------------------------~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 234 -----TDP----------------------------------------------SQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp -----TCS----------------------------------------------CHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred -----hcC----------------------------------------------CHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 000 0111222333333221100 0011
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCCC-hhHH
Q 000196 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADAD-VTVR 578 (1874)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~-~~vR 578 (1874)
. +-..+..++.++++++|..|+.+++.+...... ....++ ...++.|+......++ +.+|
T Consensus 263 ~-~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~-----------------~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 263 G-LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-----------------NKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp H-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----------------HHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred h-HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----------------HHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 1 223345667788899999999888887542110 000111 1245555555444333 7898
Q ss_pred HHHHHhccC---CCCcchh----hccHhhHHHHHHHhCCCC-HHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHH
Q 000196 579 HSIFSSLYG---NRGFDDF----LAQADCLSAIFAALNDED-FDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYL 649 (1874)
Q Consensus 579 ~~~l~~l~~---~~~f~~~----L~~~~~l~~L~~~l~D~~-~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l 649 (1874)
..++.+|.. ...-+.. +.....++.|...+.+++ ..+|..|+.+|+.++...... ..... ..+..++..+
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHH
Confidence 888777741 1010000 112346788888888775 799999999999998754321 11111 1122222222
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-- 727 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-- 727 (1874)
.. .+...|.+|++.++.-. +.+. .....+...++.++..|+... .....+
T Consensus 404 ~~--~~~~vr~~a~~al~n~~---------------------~~~~---~~~~~v~~~a~~aL~~La~~~--~~~~~l~~ 455 (644)
T 2z6h_A 404 VR--AHQDTQRRTSMGGTQQQ---------------------FVEG---VRMEEIVEGCTGALHILARDV--HNRIVIRG 455 (644)
T ss_dssp HH--HHHHHTTC-------------------------------CCS---SCHHHHHHHHHHHHHHHTTSH--HHHHHHHH
T ss_pred hc--cchhhhhHhhhccccch---------------------hccc---ccHHHHHHHHHHHHHHHhcCH--HHHHHHHh
Confidence 22 24455666666554310 0000 013456666777777666432 122222
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
...+|.+++.|.+. +...+..|+.+|+.++...... ........++.|..+++++ ++.+|..+..+|+.++.
T Consensus 456 ~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~~--~~i~~~g~l~~L~~ll~~~-~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 456 LNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA--EAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRMSE 527 (644)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHHH--HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHH--HHHHHcCChhHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 24688999999876 5678999999999887531111 0001123456677777654 78999999999999864
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-07 Score=127.97 Aligned_cols=373 Identities=11% Similarity=0.153 Sum_probs=217.7
Q ss_pred cccchHHHHHHHHHHhhccCCC----C----------CChh---HHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh
Q 000196 677 IRPYIAPIHKALVARLLEGTGI----N----------ANNG---IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~----~----------~~~~---v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~ 739 (1874)
+.|++..+...++.++..+.+. + .+.+ +....-.++..++..++... +..+++.+.+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~---~~i~~~~l~~~~~ 487 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDT---EIIMTKKLQNQVN 487 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHhc
Confidence 5566777777777777644210 0 1111 11122345555554433222 2334444444333
Q ss_pred c-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCC--CHH--HHHHHHHHHHHhcccCccchhhhcc
Q 000196 740 D-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL--VWS--TRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 740 d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~--~~~--vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
. .-++..++++++++|.++........ ....|++++.|+++..... +.+ ++..++.++|... .+. .
T Consensus 488 ~~~~sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~---~wl---~-- 558 (1073)
T 3gjx_A 488 GTEWSWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP---RFL---R-- 558 (1073)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH---HHH---H--
T ss_pred CCCCCHHHHhHHHHHHHHHHCcCCcccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH---HHH---H--
Confidence 2 23588999999999999743321100 0135889999988874332 122 3333445555521 110 0
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~- 893 (1874)
...+ |...+++.|+..+.|.. ..+..+++.|+..|...++..+
T Consensus 559 ----------------------------------~h~~-~L~~vl~~L~~~m~~~~-~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 559 ----------------------------------AHWK-FLKTVVNKLFEFMHETH-DGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp ----------------------------------HCHH-HHHHHHHHHHHHTTCCS-TTHHHHHHHHHHHHHHHTGGGGT
T ss_pred ----------------------------------hCHH-HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011 34677888888887654 3466789999999999887654
Q ss_pred -------CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh--HHHhHHHHHHHHHHhhcCCCC-----Cccc-
Q 000196 894 -------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH--IRKYLQELFSLISELWSSFSL-----PATN- 958 (1874)
Q Consensus 894 -------~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~--i~~y~~~i~~~i~~~~~~~~~-----~~~~- 958 (1874)
.||+++++..+-.....-.+.....++.++|.++...+.. ...++..+++...+.|+.... ++-.
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~ 682 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILK 682 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc
Confidence 4678888887777766666667778889999999877643 357788888888777764210 0000
Q ss_pred cc---ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHH
Q 000196 959 RT---YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIR 1035 (1874)
Q Consensus 959 ~~---~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~ 1035 (1874)
++ .....++++..++|.++|..|.|++..++|.++++-+. ....+-+++..-|...... ++.+
T Consensus 683 d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~------~~~~ 748 (1073)
T 3gjx_A 683 DPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ------PLIR 748 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS------HHHH
T ss_pred ChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc------HHHH
Confidence 00 12235677777889999999999999999988876532 1111222333333322211 1111
Q ss_pred hhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHHh----CCCCHHHH-HHHHHHHHHHHHHhccccccchhh
Q 000196 1036 LFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVL----DGKNDELR-KDAVDALCCLAHALGEDFTIFIPS 1109 (1874)
Q Consensus 1036 ~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l----~~~~~~l~-~~al~~L~~l~~~~g~~f~~~ip~ 1109 (1874)
.+ ..+|+..++.+...+.. .+.......++++|+..+ ....++.| ...+.++..++.++|..+.+.+|.
T Consensus 749 ~~-----r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~ 823 (1073)
T 3gjx_A 749 SM-----RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ 823 (1073)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH
T ss_pred HH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH
Confidence 11 23566666666654433 232233344444444332 22234444 557899999999999999999999
Q ss_pred HHHHHHh
Q 000196 1110 IHKLLLK 1116 (1874)
Q Consensus 1110 i~~~l~~ 1116 (1874)
|...+..
T Consensus 824 il~~vf~ 830 (1073)
T 3gjx_A 824 IFDAVFE 830 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-09 Score=140.38 Aligned_cols=304 Identities=9% Similarity=-0.012 Sum_probs=182.7
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000196 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~ 103 (1874)
.+..+++.|++++.+.++ +++.++ .+.. ..+ -......+.+++++++...|..|+.++..|.....
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~-~~~~-------~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-- 182 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLIN-YQDD-------AEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-- 182 (780)
T ss_dssp ----------CCSCHHHHHHHHHHH-HHHH-------HHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH--
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHH-hhhH-------HHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh--
Confidence 367899999998776665 444443 2211 111 12234445566778888999999999999865421
Q ss_pred chhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 104 NASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 104 ~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
....+ ....+.|..++....|.++++.|+++|..|+..... ...++. ..++.+++.|+++ +...|..|+.+|..
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 11111 134555555554345899999999999998764211 111221 2566777777644 46788999999999
Q ss_pred HHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHH
Q 000196 180 MAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 180 la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~ 257 (1874)
|+.+.+..-.... ..+++.++..|.+++..+|..|+.+|..+.. . ....+.... ...++.+..-+.+.++...+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~--~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G--NQESKLIILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T--CHHHHHHHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--C--ChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 9988665433332 4688899999999999999999998885432 1 111111111 12344444445554444455
Q ss_pred HHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000196 258 HGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1874)
..++.++..|..+.. ..+.+ ..++..++..+.+.+..+++.++.++..++...+... ....+++.|...|+..
T Consensus 337 ~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~ 411 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSD 411 (780)
T ss_dssp HHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCC
Confidence 566667777664321 11111 1245677777788888899999999999987654321 1256788888888754
Q ss_pred C--CcchHHHHHHHHHhhc
Q 000196 336 A--ERDSGFIALGEMAGAL 352 (1874)
Q Consensus 336 ~--~R~~a~~alg~la~~v 352 (1874)
. .|..|..+|+.++..-
T Consensus 412 d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 412 DINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp CHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 4 4678899999886543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-08 Score=130.72 Aligned_cols=491 Identities=14% Similarity=0.091 Sum_probs=276.0
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+++.++++.||..|+.+++.+..... .....+ ..+++.|+.....++++++|..++.+
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~------------------~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 80 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTT------------------HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCh------------------hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999999988864221 011111 24566666665556688999888777
Q ss_pred ccC-CCCcc--hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 585 LYG-NRGFD--DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 585 l~~-~~~f~--~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
|.. ....+ ..+.....++.|...+++++..+|..|+.+|+.++...+.........-.++.+..+..+ ++.+.+..
T Consensus 81 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~ 159 (644)
T 2z6h_A 81 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 159 (644)
T ss_dssp HHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHH
Confidence 641 01100 112223468889999999999999999999999998754322111111122333333334 45677777
Q ss_pred HHHHHHHHHHhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHH
Q 000196 662 SAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l 738 (1874)
++.+|..++...++.-.... ...++.|+..+++. ....+...++.++..++. .......+ ...+|.++..+
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll 233 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL 233 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC----ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH
Confidence 78888888854332111111 13466777777764 244566666777777663 22223322 24688888888
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
.+. +...+..|+++|+.++...... .....+++.|+.+++++ ++.+|..+..+++.+..-++.....
T Consensus 234 ~~~-~~~~~~~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~~~~~~~~~------- 300 (644)
T 2z6h_A 234 TDP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMM------- 300 (644)
T ss_dssp TCS-CHHHHHHHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHH-------
T ss_pred hcC-CHHHHHHHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHH-------
Confidence 875 5778999999999998764331 22357899999999754 7899999999998875322110000
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC-CCC-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG-CVP- 895 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~-~~~- 895 (1874)
....-+++.|+..|.+.+. ......++.++.++....+.. ...
T Consensus 301 ----------------------------------v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 301 ----------------------------------VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ----------------------------------HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ----------------------------------HHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 0011245677777765321 344455666666653211100 000
Q ss_pred -C-ccchhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000196 896 -Y-LPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1874)
Q Consensus 896 -~-l~~ilp~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1874)
. -...+|.++..++..+ +.++..++..++.+...-. +.+. ..++.++.++...-.. ++. .+.-
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~---------vr~-~a~~ 416 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 416 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HTT-C---
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchh---------hhh-Hhhh
Confidence 0 1246788888887664 3677777776666543100 1110 1122222222211000 000 0000
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHH
Q 000196 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~~~~~~~~~ 1044 (1874)
+ +... + +.+ ..........+..++..+...-. ..+ .-.+|.+++++... ..+
T Consensus 417 a-------l~n~--~------------~~~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~ 472 (644)
T 2z6h_A 417 G-------GTQQ--Q------------FVE--GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 472 (644)
T ss_dssp ----------------------------CC--SSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS-CHH
T ss_pred c-------cccc--h------------hcc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC-CHH
Confidence 0 0000 0 000 00011222334444443322111 111 23689999998754 677
Q ss_pred HHHHHHHHHHhhcccccccchh--HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000196 1045 IRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1874)
++..|..+|+.++........+ ...+..|...+.++++++|..|..+|+.+...-+.+|
T Consensus 473 v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 473 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 9999999999987642221211 1246678889999999999999999999876544333
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-05 Score=101.72 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=139.7
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li 97 (1874)
+.+....+.+++..+-+++++.++.|.+ ++. +. +-+++.. . ....++ ++.+...|.-|+..+...|
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~~~r~qA~~---~L~-q~-q~sp~aw----~----~~~~iL~~s~~~~vR~fAa~~L~~~I 89 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEGAQQRMAQE---VLT-HL-KEHPDAW----T----RVDTILEFSQNMNTKYYGLQILENVI 89 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSHHHHHHHHH---HHH-TS-SCCSCHH----H----HHTCC---CCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHH---HHH-HH-HcCchHH----H----HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5578889999999998876554444332 221 11 1233322 1 122333 3567888999999999998
Q ss_pred ccccCc----chhHHHH-HHHHHHhhccc----CCChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcc
Q 000196 98 DVALGE----NASKVSK-FSNYMRTVFEV----KRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVE 167 (1874)
Q Consensus 98 ~~~~~~----~~~~~~~-~~~~L~~~l~~----~~d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~ 167 (1874)
...-.. ....++. ..+++...-.. ..+..++...+.++..++.. -+..|+++++.++..+- .+.
T Consensus 90 ~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~------~~~ 163 (1073)
T 3gjx_A 90 KTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASR------TSE 163 (1073)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHH------HCH
T ss_pred HhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhC------CCH
Confidence 753211 1222332 24555554321 13577888999999999986 34568888887776442 123
Q ss_pred hhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 168 YRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p----------------~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
..+..++.+|+.|.+..- +.|...++.+++.+...|. ..++.+..++.++++.+++++.-...
T Consensus 164 ~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i 243 (1073)
T 3gjx_A 164 SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYI 243 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHh
Confidence 456778888888876521 1356677778877767774 44678888899999998887641110
Q ss_pred hhHHHHHHHHHHHH-HhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 231 RWRVQWYYRMFEAT-QDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
.. ..+++.+ ...+.+ .+.+.+|+.+|.+++..
T Consensus 244 -~~----~~ll~~L~~~~L~~---~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 244 -FE----TKLISTLIYKFLNV---PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp -HS----SSHHHHHHHHTSSS---HHHHHHHHHHHHHHHHS
T ss_pred -cc----chHHHHHHHHhcCC---hHHHHHHHHHHHHHHhc
Confidence 01 2344444 344432 46789999999998874
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=130.72 Aligned_cols=483 Identities=14% Similarity=0.080 Sum_probs=271.1
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+..++.++++.+|..|+.+++.+..... .....+ ...++.|+.....++++++|..+..+
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~------------------~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHH------------------HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCc------------------cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999999888864211 011112 24566666655556788999888777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 585 l~~-~~~--f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
|.. ... ....+.....++.|...++++++.+|..|+.+|+.++...+....-....-.++.+..+-.+ ++.+.+..
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHH
Confidence 742 011 00112223468889999999999999999999999998765321111111122233333344 56778888
Q ss_pred HHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHH
Q 000196 662 SAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l 738 (1874)
++.+|..++...++.-..... ..++.++..+++. ........+..++..++.. ......+ ...+|.+++.+
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHH
Confidence 888888887543221111111 3456666767664 1344555666666666542 2222222 25788888888
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
.+. +...+..|+++|+.++..... ......+++.|++++.++ ++.+|..++.+++.++.-++-....
T Consensus 237 ~~~-~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~------- 303 (529)
T 1jdh_A 237 TDP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMM------- 303 (529)
T ss_dssp TSS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHH-------
T ss_pred hCC-ChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHH-------
Confidence 876 577889999999999876532 223357899999999654 7899999999999885422210000
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC--CC-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--CV- 894 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~--~~- 894 (1874)
....-+++.|+..|.+++. ......++.++.++....+.. ..
T Consensus 304 ----------------------------------~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 304 ----------------------------------VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp ----------------------------------HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ----------------------------------HHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 0011245667777754321 334445666666553211110 00
Q ss_pred CC-ccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000196 895 PY-LPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1874)
Q Consensus 895 ~~-l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1874)
.. -...+|.++..++...+ .++..+++.++.+...-. +.+. ..++.++..+...... ++. .+.-
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---------v~~-~a~~ 419 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 419 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HC------
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH---------HHH-HHhc
Confidence 00 12457888888887654 677777777777653110 1111 1233333333321100 000 0111
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh---h-hhhhHHHHHHhhcCCCcHH
Q 000196 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE---H-MHLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~---~-~~~ilp~l~~~~~~~~~~~ 1044 (1874)
++...+ +.+. .........++.++..+...-+. . -...+|.+++++..+ ..+
T Consensus 420 ~l~n~~---------------------~~~~--~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~ 475 (529)
T 1jdh_A 420 GGTQQQ---------------------FVEG--VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 475 (529)
T ss_dssp ---------------------------CBTT--BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred ccCchh---------------------hhcc--ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chH
Confidence 111000 0000 00011112233333333221110 0 023578888888754 678
Q ss_pred HHHHHHHHHHhhcccccccch--hHhHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000196 1045 IRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1874)
++..|..+++.++........ -...+..|.+.+.+++++++..|..+|..|
T Consensus 476 v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999998753211111 123467788899989999999999988765
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-07 Score=119.49 Aligned_cols=507 Identities=13% Similarity=0.094 Sum_probs=283.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.++.+-..++..+..|-+.. ..+..++..+.+++..+|+.+.-++..++. ..++....+.+.+...
T Consensus 54 ~k~~~l~Kli~l~~~G~d~s------~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--------~~~e~~~L~iN~l~kD 119 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDID------FGHMEAVNLLSSNRYTEKQIGYLFISVLVN--------SNSELIRLINNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCCC------SCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCc------hhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--------CCcHHHHHHHHHHHHh
Confidence 34455555555444443322 345667788999999999999988876542 1234455667777788
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL--EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~--~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1874)
+.+++ .-+|-.|+.+++.+. .+ ...+.+...|...+ .++++.||+.|+.++..+....|+.. + + +..+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~--~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~-~-~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVG--SR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-P-M-GDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHC--CH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-C-C-CSCH
T ss_pred cCCCC-HHHHHHHHHHhhccC--CH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-C-c-hhHH
Confidence 88875 455666666666552 22 23345667778888 89999999999999999988777533 2 1 2456
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC---C-----C-C-c---hhHHHHHHHH
Q 000196 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---K-----P-S-L---EALACVGNIA 390 (1874)
Q Consensus 326 ~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~---~-----~-~-~---~a~~~l~~l~ 390 (1874)
+.+...|.+.+ .+..|+.+++.++..-+..+.++++.++..+...+....- + . . . .++.+++
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~--- 266 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ--- 266 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG---
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH---
Confidence 66777775433 4678888899988877766778888888877766533211 0 0 0 1 1222222
Q ss_pred HHhCCC----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000196 391 RAMGPV----MEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS--LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1874)
Q Consensus 391 ~~~g~~----~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~--l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1874)
.+++. ....+.++++.++... ...|. .......
T Consensus 267 -~~~~~~d~~~~~~l~~~L~~il~~~-------------~~~~ks~~l~~~n~--------------------------- 305 (621)
T 2vgl_A 267 -CYPPPEDPAVRGRLTECLETILNKA-------------QEPPKSKKVQHSNA--------------------------- 305 (621)
T ss_dssp -GSSSCSSHHHHHHHHHHHHHHHHHH-------------HSCCSCSSHHHHHH---------------------------
T ss_pred -HhCCCCCHHHHHHHHHHHHHHHHhh-------------ccCcccccccccch---------------------------
Confidence 22221 1111112222221100 00000 0000000
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccc
Q 000196 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544 (1874)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~ 544 (1874)
.....-.|..++..+.- ...+....-..+..++.+.++++|..|..++..++...+.
T Consensus 306 -------------~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--------- 362 (621)
T 2vgl_A 306 -------------KNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--------- 362 (621)
T ss_dssp -------------HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---------
T ss_pred -------------HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---------
Confidence 00011112222222210 0011111112334567777899999999888888643210
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 545 SRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623 (1874)
Q Consensus 545 ~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1874)
...+......++. .+. |+|..||..+++.+.. -..+ -.-..++..|...+.+.+.+.|..++..+
T Consensus 363 ----------~~~~~~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~--l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 ----------HEAVKTHIETVIN-ALKTERDVSVRQRAVDLLYA--MCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp ----------HHHHHTTHHHHHH-HHTTCCCHHHHHHHHHHHHH--HCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HhccCCCHhHHHHHHHHHHH--HcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1223333333333 245 9999999999887731 0001 00123566666777778899999999999
Q ss_pred HhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChh
Q 000196 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1874)
Q Consensus 624 ~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1874)
+.++...|... ...-.+|.+++..- ++ ....++...+..++...+ .++.| ++..+...+.++. ....
T Consensus 429 ~~la~k~~~~~-~~~v~~Ll~ll~~~----~~-~v~~ev~~~l~~ii~~~~-~~~~~---~~~~l~~~l~~~~---~~~~ 495 (621)
T 2vgl_A 429 AILAEKYAVDY-TWYVDTILNLIRIA----GD-YVSEEVWYRVIQIVINRD-DVQGY---AAKTVFEALQAPA---CHEN 495 (621)
T ss_dssp HHHHHHHCSST-HHHHHHHHHHHHHH----GG-GSCSHHHHHHHHHHGGGC-SCHHH---HHHHHHHHHTSSS---CCHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHhh----cc-cchHHHHHHHHHHHhCCh-hHHHH---HHHHHHHHHcCcc---chHH
Confidence 99998766443 22333455555432 11 233345566666665543 23333 4556677777642 2445
Q ss_pred HHHHHHHHHHHHHHhcccc--hhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 704 IISGVLVTVGDLARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 704 v~~~~~~~l~~La~~~g~~--~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
+...++..+|+-+....+. ..| .+++..+.+.+.+. +..+|..++.++.++....+. ..+.+..+++.
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~-~~~v~~~~Lta~~Kl~~~~p~-------~~~~i~~~l~~ 565 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLC-SVPTRALLLSTYIKFVNLFPE-------VKATIQDVLRS 565 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHCGG-------GHHHHHHHHSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHH
Confidence 6666678888876543321 111 24455666666554 678999999999988654321 11233333333
Q ss_pred hcC--CCCHHHHHHHHHHHHHhc
Q 000196 782 LNG--ELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 782 l~~--~~~~~vr~~al~~lg~lg 802 (1874)
... +.+.++|..|......+.
T Consensus 566 ~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHc
Confidence 333 568999999988877664
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-09 Score=119.06 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=151.2
Q ss_pred CCChHHHHHHHHHHHH-HhhhCCCcc---hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch-hchHHH
Q 000196 122 KRDREILVLASKVLGH-LARAGGAMT---ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN-VHVAEF 195 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~-l~~~~g~~~---~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~-~~l~~i 195 (1874)
+.+-.-|+.|...++. ++....... .+| ...+..+..++..+.+...|.+|+.++++|+++.. ..|. +|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 5688999999999999 875422222 233 23366666777556777789999999999999988 7888 999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---
Q 000196 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--- 272 (1874)
Q Consensus 196 l~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--- 272 (1874)
+|.|+..+.|+++.||+++..|+..++..+.. ... ..++..+++.+...++++ .|.++.+++.+++.++...+
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~--~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LAS--SGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCT--TCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-ccc--CCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999988775421 100 002556788888888776 48999999999999998666
Q ss_pred hhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 273 EFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 273 ~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
+.+.+++ .++++.+..++++.++.||.+++.+++.++...++.
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 4577899 999999999999999999999999999998755543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-07 Score=122.66 Aligned_cols=308 Identities=8% Similarity=-0.025 Sum_probs=187.5
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
...+.+++++++...|..|+.++..|..... ....+ ....+.|..++...+|.+++..|+++|..|+.... ...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 95 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLL 95 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH--HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc--cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHH
Confidence 4455567778899999999999999875421 11111 12445555555434589999999999999876421 111
Q ss_pred HHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~-l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
.+++ ..++.+++.|.++ +...|..|+.+|..++...+..-... -...+|.++..+.++++.+|..++.+|..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 1222 2456666667543 45678889999999998765431111 246788999999999999999999988865421
Q ss_pred hhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHH
Q 000196 226 EKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSIT 302 (1874)
Q Consensus 226 ~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~ 302 (1874)
....+.... ...++.+..-+.+.++...+.+++.++..+..+.. ....+ ...++.++..+.+.++.+++.++
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 111111111 12334444444444445556666667766654221 12222 13566777778888899999999
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-HHHHHHHHHhhcCCC--CC
Q 000196 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRR--GK 377 (1874)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~L~~~~--~~ 377 (1874)
.++..++...+..- .....++.|...|...+ .|..|..+|+.++..-.+...... ...++.+.+.+.... ..
T Consensus 249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 99999987654321 23567888888886544 477899999998764332211111 123444444443221 12
Q ss_pred CCchhHHHHHHHHH
Q 000196 378 PSLEALACVGNIAR 391 (1874)
Q Consensus 378 ~~~~a~~~l~~l~~ 391 (1874)
....++.+++.|+.
T Consensus 326 v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 326 ITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc
Confidence 23467777777653
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-08 Score=126.45 Aligned_cols=355 Identities=14% Similarity=0.106 Sum_probs=220.8
Q ss_pred HHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc
Q 000196 25 ALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
.+..+++++.|.+.+.+ .|...+++++ .++-.+- ..... ..+++.+.++++ +.+...+..|..+|..+.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~~~~-i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSSCCC-HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCCCch-HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 47889999998864444 4777777765 2222211 11111 224566667775 4557788889999999876531
Q ss_pred CcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcc----hhHHHHH
Q 000196 102 GENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE----YRRFAAV 174 (1874)
Q Consensus 102 ~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~----~~r~aA~ 174 (1874)
.. ...+. -..+.|..++. +.+.+++..|+++||.|+..+......++.. .++.++..|...... .....++
T Consensus 153 ~~-~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 153 EQ-TKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HH-HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 11 11111 13567777775 5789999999999999987521111112221 355666677533222 2344567
Q ss_pred HHHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCC
Q 000196 175 LILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRN 251 (1874)
Q Consensus 175 ~~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~ 251 (1874)
.++..++.+. |..-...+..++|.++..+.++++.|+..|+.||+.+...-. ...+. -..+++.+..-+.++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-----HHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-----hhHHHHHhccchHHHHHHhcCC
Confidence 7888888764 333345677899999999999999999999999987654211 11111 123455666666665
Q ss_pred CChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHH
Q 000196 252 APVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILT 330 (1874)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~ 330 (1874)
+..++..++.+++.++.+..+....-.+ ..+..+..++.++++.||+.++.+|..++...+.....-.-..++|.|..
T Consensus 306 -~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 306 -ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 4678889999999887644322111111 24456677788999999999999999999876643221111357888888
Q ss_pred hhcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHH
Q 000196 331 VLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIAR 391 (1874)
Q Consensus 331 ~L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~ 391 (1874)
.|.+.. .|..|..+|++++..-..+...++ ..+++.+.+.|...+.+....++.++..|..
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 887765 467888999998765433322333 2355666666654433323345556655544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=127.72 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=220.4
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLES-NDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
+..++++|.|.+.+.+ .|+.++++++ .+|-.+- ....++ -+++.+.+++++ .+...+..|..||..|.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rkll---s~e~~pp-i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~- 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS- 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TCSSCCC-HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCch-HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-
Confidence 7888999999875544 4888888876 2332211 112221 245667777764 456778889999999875531
Q ss_pred cchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcc----hhHHHHHH
Q 000196 103 ENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVE----YRRFAAVL 175 (1874)
Q Consensus 103 ~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~----~~r~aA~~ 175 (1874)
+....+. -..+.|..++. +.+.++++.|+++|+.|+..+......+++ ..++.++..|...... .....++.
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 1111111 13567777775 578999999999999998752111111111 1355566666533221 23445677
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCC
Q 000196 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~ 252 (1874)
.+..++.+. |..-...+..++|.+...+.++++.|+..|+.||+.+... . ....+. -..+++.+..-+.++
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~----~-~~~~~~i~~~g~i~~Lv~lL~~~- 286 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----P-NERIEMVVKKGVVPQLVKLLGAT- 286 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS----C-HHHHHHHHTTTCHHHHHHHHTCS-
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc----h-hhhHHHHHhcccchhhhhhhcCC-
Confidence 788888764 3344456778999999999999999999999999876431 1 111111 123455666666665
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1874)
+..++..++.+++.+.....+....-.+ ..+..+..++.++++.||+.++.++..++...+.....-.-..+++.|...
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 3678889999999887644322111111 133445566788899999999999999998666432211113678888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 332 L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
|++.+ .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|...
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 87654 467889999998765433322333 23556666666544333334566666666543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-07 Score=108.15 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=142.1
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHH-
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT- 647 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~- 647 (1874)
.+.|+++.+|..++.+|+. +..++.++.|..+++|+++.||..|+..|+.+..... . .+. +..++.
T Consensus 31 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~-~~~----l~~~L~~ 97 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQL-------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C-EDN----VFNILNN 97 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T-HHH----HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHc-------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c-chH----HHHHHHH
Confidence 4689999999999999852 1235678899999999999999999999999874321 1 222 223332
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
.+..+ .++..|..++++|+.+....+ ++.+.+++.++..+.++ ++.|+..++.+++.+..
T Consensus 98 ~~~~d-~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-----~~~vR~~a~~aL~~~~~---------- 157 (280)
T 1oyz_A 98 MALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND---------- 157 (280)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC------------
T ss_pred HHhcC-CCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-----CHHHHHHHHHHHHhcCC----------
Confidence 22344 678899999999999976543 34456778888888875 78999999988886543
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+|.++..+.|. +..+|..|+.+||.+.. ..+..++.|...++++ ++.+|..++++||.+|
T Consensus 158 ~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 KATIPLLINLLKDP-NGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 23678888888876 57899999999998621 1257888888888754 7899999999999876
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-07 Score=108.27 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=163.8
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHH
Q 000196 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1874)
Q Consensus 481 ~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1874)
....|+..|+.+.- +-....+..++.++++.||..|+.+++.+.... ..+..
T Consensus 39 vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------------------~~~~~ 90 (280)
T 1oyz_A 39 KRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------------------KCEDN 90 (280)
T ss_dssp HHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------------------TTHHH
T ss_pred HHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------------------ccchH
Confidence 45678888887631 223344557788889999999998887763210 11333
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+++.|...+..|+++.||..++.+|+. +... -..+..++.+...++|+++.||..|+..|+.+.. | ...|.+
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~---l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~-~~~~~L 164 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K-ATIPLL 164 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH---HhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H-HHHHHH
Confidence 444444345689999999999999862 1110 0134678889999999999999999999998765 2 233333
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~ 718 (1874)
.+ .+ .+ +++..|..|++.|+.+... -+.+++.++..+.++ ++.|+..++.+++.+..
T Consensus 165 ~~-------~l-~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 165 IN-------LL-KD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDK-----NEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp HH-------HH-TC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTTC-
T ss_pred HH-------HH-cC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCC-
Confidence 22 22 33 5788999999999887311 245667778878764 78899998888887641
Q ss_pred cccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000196 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1874)
Q Consensus 719 ~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~l 798 (1874)
+..+|.++..+.|. ++|..|+.+||.+- . +..++.|...+++..++.++..++..+
T Consensus 222 ---------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~----~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC----c--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 35677888888764 38889999999862 1 356788888887766778888877766
Q ss_pred H
Q 000196 799 G 799 (1874)
Q Consensus 799 g 799 (1874)
.
T Consensus 278 ~ 278 (280)
T 1oyz_A 278 K 278 (280)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-08 Score=123.57 Aligned_cols=355 Identities=13% Similarity=0.112 Sum_probs=221.3
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSI 581 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~ 581 (1874)
+.++ +..+.+++++++..|+.++.+++..... +....++ ..+++.|+...-.+.++.++..+
T Consensus 59 i~~~-v~~l~s~d~~~q~~a~~~~rklls~e~~----------------ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~A 121 (510)
T 3ul1_B 59 VEDI-VKGINSNNLESQLQATQAARKLLSREKQ----------------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121 (510)
T ss_dssp HHHH-HHHHTSSCHHHHHHHHHHHHHHHTCSSC----------------CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHH-HHHhcCCCHHHHHHHHHHHHHHhcCCCC----------------chHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
Confidence 3444 3567778899999999999998854321 0012222 24677788765556678898877
Q ss_pred HHhccC--CCCc--chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhh
Q 000196 582 FSSLYG--NRGF--DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQ 651 (1874)
Q Consensus 582 l~~l~~--~~~f--~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~ 651 (1874)
..+|+. ...- -..+.....++.|..++.+++.+||+.|+.+|+.|+..+|. .+..+ ..++..+..
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-----~r~~v~~~G~i~~Ll~lL~~ 196 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-----FRDLVIKHGAIDPLLALLAV 196 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTCHHHHHHHTCS
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-----HHHHHHHcCChHHHHHHHHh
Confidence 766641 0000 01122234688999999999999999999999999987753 23322 223333332
Q ss_pred CC---CChHhHHHHHHHHHHHHHhCccc-cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 652 SS---ADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 652 ~~---~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
.+ ........+++.+..+++..... -...+..+++.|+..+.+. ++.++..++.++..|+....+......
T Consensus 197 ~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-----~~~v~~~A~~aL~~L~~~~~~~~~~i~ 271 (510)
T 3ul1_B 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-----DPEVLADSCWAISYLTDGPNERIEMVV 271 (510)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence 20 11233557888888887654221 1223467888888888764 778888999999988754322211111
Q ss_pred -HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 728 -SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 728 -~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
..++|.+++.|.+. +..++..|+.+||.++........ ...-...++.|..+|++. +..+|..++.+++.+.+-.+
T Consensus 272 ~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~-~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 272 KKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp TTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCH
T ss_pred hcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHH-HHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcH
Confidence 24688888888865 577899999999998765432100 000123445556666544 68999999999998865332
Q ss_pred cchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHH
Q 000196 807 HAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1874)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~ 886 (1874)
...... ...-+++.|+..|++.+. ..+..++.|+.++.
T Consensus 349 ~~~~~v-----------------------------------------~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 349 DQIQQV-----------------------------------------VNHGLVPFLVGVLSKADF-KTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHH-----------------------------------------HHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------------------------HhcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHH
Confidence 211000 012356778888887764 44557778888877
Q ss_pred HHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000196 887 KSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1874)
Q Consensus 887 ~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1874)
.........++ ..+++.|+..++..++.++..++..|..+...
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 64332222222 35788888888888877777777776666543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-07 Score=120.81 Aligned_cols=350 Identities=13% Similarity=0.104 Sum_probs=221.2
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..+.+++++++..|+..+.+++..... +....+ -..+++.|+.....++++.++..+..+|.
T Consensus 82 v~~l~s~d~~~q~~a~~~~rklLs~~~~----------------~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ 145 (529)
T 3tpo_A 82 VKGINSNNLESQLQATQAARKLLSREKQ----------------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 145 (529)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTSSSC----------------CCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCC----------------chHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4566778889998999999988753221 001122 23567778877666778899987777664
Q ss_pred C---CCC-cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCC---
Q 000196 587 G---NRG-FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSS--- 653 (1874)
Q Consensus 587 ~---~~~-f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~--- 653 (1874)
. ... -...+.....++.|+.++.+++.+||+.|+.+|+.|+..+|. .+..+ ..++..+....
T Consensus 146 nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-----~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-----FRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-----HHHHHHHcCCcHHHHHHHhccchhH
Confidence 1 110 001122334688999999999999999999999999987753 23322 22233333220
Q ss_pred CChHhHHHHHHHHHHHHHhCcccc-ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLI-RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~-~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~ll 731 (1874)
........+++.+..++....... ...+..+++.|+..+.+. ++.+...++.+|..++....+.....+ ..++
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i 295 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-----DPEVLADSCWAISYLTDGPNERIEMVVKKGVV 295 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccch
Confidence 112335678888888876543221 223467888888888764 788888999999988864332211111 3468
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhh
Q 000196 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKR 811 (1874)
Q Consensus 732 p~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~ 811 (1874)
|.++..|.+. +..++..|+.+|+.++....... ....-...++.|..+|++. ++.+|.+++.+|+.+.+-.+.....
T Consensus 296 ~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~-~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 296 PQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQT-QKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHH-HHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888865 57789999999999976543211 0001123556677777654 6899999999999886533221100
Q ss_pred hcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCC
Q 000196 812 NQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL 891 (1874)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~ 891 (1874)
. ...-+++.|+..|.+.+. ..+..++.|+.++......
T Consensus 373 v-----------------------------------------~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 373 V-----------------------------------------VNHGLVPFLVGVLSKADF-KTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp H-----------------------------------------HHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSCH
T ss_pred H-----------------------------------------HhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHHHcCCCH
Confidence 0 011256677888877764 3455677788887654322
Q ss_pred CCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 892 GCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 892 ~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
....++ ..++|.|+..++..++.++..++..|..+..
T Consensus 411 ~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 411 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222222 3478889998888887777777777666654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-07 Score=120.52 Aligned_cols=305 Identities=10% Similarity=0.185 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000196 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
...+..+++.+.... .+.+.|+..+..++........ .. + .+...+.+.+..+... .+|+.++..|....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~ 84 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VP--E-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSN 84 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CC--H-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTT
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cc--h-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcC
Confidence 445667778776543 3444578888887743211111 11 1 2344444555443222 899999999986653
Q ss_pred CcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
.. +..-.-+.+.|..++.. +.+..|+++|..++..++.. ..+.-+...++.++++|.....|..|.+|+.++..
T Consensus 85 ~~-~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 85 LS-PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA---VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp CC-TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CC-CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 22 21212222223333322 34578888888899998886 34555677888899999877789999999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 259 (1874)
+++.+|..+..+++.++|.+..++.|.+++|..+|..++..+...+.+++. ..++|.+...+.+++ + ...
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~--~-~~~ 230 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPT--E-VPE 230 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTT--H-HHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChh--h-hHH
Confidence 999999999999999999999999999999999999999999998887764 355666777777663 2 233
Q ss_pred HHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh--ChhhHHHHHHHHHHHHHHHhhcC---
Q 000196 260 SLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF--LRDRFVTNYLKICMNHILTVLRI--- 334 (1874)
Q Consensus 260 al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~--~~~~f~~~yl~~~~~~Ll~~L~~--- 334 (1874)
++..|++--. -.+.-.|-+.=+++.+.+.++.+...+++.++.++..+++. +|. -+..|++.++|.+......
T Consensus 231 ~~~~l~~~tf-v~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-~~~~f~~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 231 TVHLLGATTF-VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-VIAPFLGKLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHHHTTCCC-CSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-HHHHHHTTTHHHHHHHTTTCCS
T ss_pred HHHHhhcCee-EeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-HHhhhhhhhhhHHHHHhhccCC
Confidence 3333322100 01223356666777888888889888988888899999874 333 3556889999998887654
Q ss_pred CCCcchHHHHHHHHHhh
Q 000196 335 PAERDSGFIALGEMAGA 351 (1874)
Q Consensus 335 ~~~R~~a~~alg~la~~ 351 (1874)
+.-|+.|-.|+..+-.+
T Consensus 309 pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 309 PEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33487777776666433
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-07 Score=99.87 Aligned_cols=192 Identities=21% Similarity=0.224 Sum_probs=139.6
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
+.++.+.+.....++.++.++++.+|..|+.+++.+-.. ..+. .|+. .+.|+
T Consensus 6 ~~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~ 57 (201)
T 3ltj_A 6 HHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDE 57 (201)
T ss_dssp -CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCS
T ss_pred ccccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------------------hHHH----HHHH-HHcCC
Confidence 334455566777788999999999999999888775321 1122 2332 35799
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC
Q 000196 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1874)
++.+|..++.+|+. +..++.++.|..+++|+++.||..|+..|+.+... ...|.+. . .+ .+
T Consensus 58 ~~~vr~~a~~~L~~-------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~----~---~l-~d- 118 (201)
T 3ltj_A 58 DAWVRRAAADALGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLI----K---AL-KD- 118 (201)
T ss_dssp SHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHH----H---HT-TC-
T ss_pred CHHHHHHHHHHHHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHH----H---HH-cC-
Confidence 99999999999852 12346788899999999999999999999997642 1223222 2 22 34
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~ 733 (1874)
.++..|..|++.|+.+.. +..++.|...+.++ ++.|+..++.+++.+.. +..++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~----------~~~~~~ 173 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAA 173 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHH
Confidence 578899999999998842 23455667777764 78899999999888721 467888
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
+...+.|. +..+|..|..+|+.+-
T Consensus 174 L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 174 MEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88888876 6789999999999853
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-07 Score=105.45 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=157.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccC---CCC-cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYG---NRG-FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~-f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+.|+.. +.++++++|..++.+|.. ... ....+.....++.|...+++++.++|..|+.+|+.++..++.......
T Consensus 5 ~~L~~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKL-LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344443 466778899888877741 110 111222335789999999999999999999999999987654321111
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1874)
..-.++.+..+..+ ++...++.|+++|+.++...+......+. ..++.++..+.+. ++.++..++.+++.++.
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-----~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIAS 157 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHc
Confidence 11122333333344 57889999999999998654433222222 4677788888764 78899999999999876
Q ss_pred hcccchhhc-HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 718 VGGFGMRQY-ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 718 ~~g~~~~~~-~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+...... -...+|.+++.+.+. +...|..|+.+|+.++........... -...++.|+.+++++ ++.+|..++.
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~ 234 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTST-DSEVQKEAQR 234 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCC-cHHHHHHHHH
Confidence 433221111 145889999999865 578999999999999874332211111 245788999998765 6899999999
Q ss_pred HHHHhcccCc
Q 000196 797 VLGIMGALDP 806 (1874)
Q Consensus 797 ~lg~lgaldp 806 (1874)
+++.++.-.+
T Consensus 235 ~L~~l~~~~~ 244 (252)
T 4hxt_A 235 ALENIKSGGW 244 (252)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCC
Confidence 9999875433
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=116.26 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHHHHH
Q 000196 125 REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDAIWV 201 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p--~~~~~~l~~il~~i~~ 201 (1874)
..-++.|+..+..+... ++..... ...+..+...+. ++... .+|+.++..|++..+ .-+.||+-.++|.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 44445666666666543 2211111 122333333332 33333 899999999997643 3569999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 281 (1874)
++.|....||.||..|+.++...+. . .....++|.+..+|.....|..+.||+.+++.|.+..++.+.-++.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~-~------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVN-P------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSC-G------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCC-H------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 9999999999999999998877654 1 12477888888888766579999999999999999878999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhH
Q 000196 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLP 361 (1874)
Q Consensus 282 i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~ 361 (1874)
+++.+-...-+..+.|++++..++..++...... -+.+.+|.|..++.++++-..++..|+... .|..-=.|-+.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~----d~~~~~~~~~~~~~~p~~~~~~~~~l~~~t-fv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNK----DIERFIPSLIQCIADPTEVPETVHLLGATT-FVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT----TTGGGHHHHHHHHHCTTHHHHHHHHHTTCC-CCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc----chhhhHHHHHHHhcChhhhHHHHHHhhcCe-eEeeecchhHH
Confidence 9999999999999999999999999988754422 134457888888888865444444444421 12221136666
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC--CchHHHHHHHHHHHhc---CCCHHHHH
Q 000196 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGP--VMEPHVRGLLDIMFSA---GLSTTLVD 419 (1874)
Q Consensus 362 ~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~--~~~p~l~~ll~~ll~~---~ls~~l~~ 419 (1874)
-+++.+..+|..........+...+..|++-+.. +..||++.++|.+-.. ...|+.++
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 6778888888654322224677888899988875 6889999999988753 24566654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-06 Score=98.99 Aligned_cols=237 Identities=15% Similarity=0.073 Sum_probs=163.2
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
+.+.+++++++...|..|+.++..+..... +....+. ...+.|..++. ..|.+++..|+++|+.|+.........+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 445677888888899999999999976542 1111111 24567777775 4689999999999999987522122222
Q ss_pred HH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 150 VE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 150 v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
++ ..++.++..|.+ .+...|..|+.+|+.++.+.+..-...+ ...++.++..++++++.+|..|+.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--- 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--- 158 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---
Confidence 22 246666666654 4567889999999999976554322111 35788899999999999999999999887532
Q ss_pred cchhhHHH-HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 228 RETRWRVQ-WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 228 r~~~~~~~-~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
....... .-..+++.+...+.++ +.+++..++.+|+.+.....+....-. ...++.++..+++.++.+|+.++.++
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1111111 1234667777777765 468899999999998864433222211 23667888888899999999999999
Q ss_pred HhHhhhChhhH
Q 000196 306 PRIAHFLRDRF 316 (1874)
Q Consensus 306 ~~la~~~~~~f 316 (1874)
..++...+..+
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99998776544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-06 Score=92.53 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=132.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.|+++.+|..++.+|+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .
T Consensus 22 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---~~~~~L~~-------~ 84 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE---RAVEPLIK-------A 84 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------H
T ss_pred HhcCCCHHHHHHHHHHHHh-------cCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---HHHHHHHH-------H
Confidence 4689999999999999852 11235688899999999999999999999987632 22233322 2
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1874)
+ .+ .++..|..|++.|+.+.. +..++.++..+.++ ++.|+..++.+++.+.. +
T Consensus 85 l-~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 137 (201)
T 3ltj_A 85 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 137 (201)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC----------H
Confidence 2 34 578899999999988732 12445566667654 78899999999888742 3
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 729 ~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..+|.+...+.|. +..+|..|+.+|+.+ | .+..++.|..+++++ ++.+|.++.+.|+.+.
T Consensus 138 ~~~~~L~~~l~d~-~~~vr~~A~~aL~~~----~--------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDE-DGWVRQSAADALGEI----G--------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHH----C--------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh----C--------chhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5677888888876 678999999999987 1 146778888888654 7899999999998875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-06 Score=94.75 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=131.2
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
+.|+++.+|..++..|+. +..++.++.|...++|+++.||..|+..|+.+.. + ...|.+.+ .+
T Consensus 28 L~~~~~~vR~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~-~~~~~L~~-------~l 90 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-RAVEPLIK-------AL 90 (211)
T ss_dssp TTCSSHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G-GGHHHHHH-------HT
T ss_pred HcCCCHHHHHHHHHHHHH-------hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-HHHHHHHH-------HH
Confidence 579999999999999852 1224678889999999999999999999999864 2 12233322 22
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHh
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISE 729 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~ 729 (1874)
.+ .++..|..|+..|+.+.. +..++.|+..+.++ ++.|+..++.+++.+.. ++
T Consensus 91 -~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~ 143 (211)
T 3ltm_A 91 -KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------ER 143 (211)
T ss_dssp -TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC----------GG
T ss_pred -cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC----------HH
Confidence 34 578899999999988742 12345566667664 88899999999888732 35
Q ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 730 LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 730 llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.+|.+...+.|. +..+|..|+.+|+.+- .|..++.|...++++ ++.||.++..+|+.++
T Consensus 144 ~~~~L~~~l~d~-~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 144 AVEPLIKALKDE-DGWVRQSAADALGEIG------------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 202 (211)
T ss_dssp GHHHHHHHTTCS-SHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHhC------------chhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence 677888888876 6789999999999872 156788888888754 7899999999998876
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-07 Score=107.21 Aligned_cols=227 Identities=14% Similarity=0.093 Sum_probs=136.1
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000196 25 ALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1874)
Q Consensus 25 ~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~ 103 (1874)
....++.+|-++. +.+.+||.+|+.++........ +. .-.+. |...|+-.++|+|.+-++-++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG-----R~---------~~~N~-DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD-----IQ---------IRVDS-KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC---------CC---------CCCCT-THHHHHHHHHHHBCCBBCSSSS
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc-----ee---------ccccH-HHHHHHHHHHHhccccccccCe
Confidence 4455666666665 4444666666666644321110 00 11112 5555666666666665542111
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000196 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~ 183 (1874)
--..||+.||++||.+ .+-... -+. +..++..+ ....|..||+|++.|+++
T Consensus 240 -------------------VVAPVRETaAQtLGaL-~hLp~e-~~I----L~qLV~~l-~~~~WEVRHGGLLGLKYL--- 290 (800)
T 3oc3_A 240 -------------------TVAPVRDAAAYLLSRI-YPLIGP-NDI----IEQLVGFL-DSGDWQVQFSGLIALGYL--- 290 (800)
T ss_dssp -------------------CBCHHHHHHHHHHHHH-TTTSCS-CCH----HHHHTTGG-GCSCHHHHHHHHHHHHHT---
T ss_pred -------------------eeeehHHHHHHHHHHH-HhCChh-HHH----HHHHHhhc-CCCCeeehhhhHHHHHHH---
Confidence 1248999999999999 652211 122 33333322 456789999999999999
Q ss_pred cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHH
Q 000196 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLL 262 (1874)
Q Consensus 184 ~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~al~ 262 (1874)
-+.+.. ++.+++.++.+|+|++..||..|+++|--+. .+ +.+..++..+.+.|.+-+|- .+..+...
T Consensus 291 -~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMd 358 (800)
T 3oc3_A 291 -KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------IT----DSLDLVLEKCWKNIESEELISVSKTSNLS 358 (800)
T ss_dssp -GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred -HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------ch----hhHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 223222 8999999999999999999999999886554 11 12344444444444433221 22333344
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
.|..|......... ...+++.+..+++|.-..||.+++.++-++.
T Consensus 359 LLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 359 LLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66666653321100 1156777888899999999999999887655
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-06 Score=98.50 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=152.7
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAI 199 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i 199 (1874)
++|.+++..|++++.+++.........+++ ..++.+++.|+++. ...|..|+.+|+.++.+.+..-...+ ...++.+
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 568999999999998765531111122222 25677777886544 67889999999999986554322222 2478999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH-HHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 200 WVALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 200 ~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~-~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
+..|.++++.||+.|+.+|+.+... . ..+ .... ...++.+...+.++ +.+++..++.+|+.+.....+....
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~----~-~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASG----G-NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTS----C-HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcC----C-chHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999887432 1 112 2222 24677778778776 4788999999999988654332221
Q ss_pred HH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000196 278 RY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1874)
Q Consensus 278 ~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~ 350 (1874)
-. ...++.++..++++++.+|..++.++..++...+... .... ...++.|...+++.+ .|..|..+|++++.
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 11 2356778888899999999999999999997655432 2222 357888888887654 46788888888753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-06 Score=93.31 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=130.5
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+...+.++++.+|..|+..++.+-.. ..+. .|+. .+.|+++.||..++.+|
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~~~~vr~~a~~aL 74 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDEDAWVRRAAADAL 74 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCc-----------------------cHHH----HHHH-HHcCCCHHHHHHHHHHH
Confidence 445667888999999999888776321 1122 2333 45799999999999999
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+. .+ + .+ +++..|..|+..
T Consensus 75 ~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---~~~~~L~----~~---l-~d-~~~~vr~~a~~a 135 (211)
T 3ltm_A 75 GQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLI----KA---L-KD-EDWFVRIAAAFA 135 (211)
T ss_dssp HH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHH----HH---T-TC-SSHHHHHHHHHH
T ss_pred Hh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHH----HH---H-hC-CCHHHHHHHHHH
Confidence 62 12246788899999999999999999999998642 1223222 22 2 34 678899999999
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|+.+.. +..++.|...+.++ ++.|+..++.+++.+.. +..++.+...+.|. +..
T Consensus 136 L~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~ 189 (211)
T 3ltm_A 136 LGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGF 189 (211)
T ss_dssp HHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHH
T ss_pred HHHcCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHH
Confidence 998832 12455666777664 78899999999887732 56788888888886 678
Q ss_pred hHHHHHHHHHHHHhhc
Q 000196 746 KREVAVSTLGQVVQST 761 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~ 761 (1874)
+|..|..+|+.+....
T Consensus 190 vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999876554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=99.91 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=157.0
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
+.+.+++++++...|..|+.++..++... ......+ ....+.|..++. ..+.+++..|+++|+.|+.........+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556788899999999999997766542 1111111 123466777775 4579999999999999987421122223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
++. .++.+++.|.+ .++..|..|+.+|+.++.+.+.... -.-..+++.++..|.++++.||..|+.+|+.+...
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--- 168 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---
Confidence 322 56677777765 4567889999999999887654311 22235889999999999999999999999887531
Q ss_pred cchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 228 RETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 228 r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
........ -..+++.+..-+.++ +.+++..++.+|+.+.....+....-.+ ..++.++..+.+.++.+|+.++.+|
T Consensus 169 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 169 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp -CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred -ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11111111 134567777777766 4788999999999987644332222222 2667778888899999999999999
Q ss_pred HhHhh
Q 000196 306 PRIAH 310 (1874)
Q Consensus 306 ~~la~ 310 (1874)
..++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 98864
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0061 Score=85.77 Aligned_cols=230 Identities=7% Similarity=0.014 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~ 183 (1874)
..++.++...|...+.+..|.++++.|.+.|..+-..+. . ...+...|. ...+...|+.|...|+.....
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----~----~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----I----CVPCGLRLAEKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----T----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----H----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 445666777777777655578899999999988866532 1 122223332 344567888888888876643
Q ss_pred -cCccchhchHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChh
Q 000196 184 -ASTVFNVHVAEFVDAIWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 184 -~p~~~~~~l~~il~~i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~ 255 (1874)
....=...-..|-..++..+. ++.+.||...+.++..++..- .+ ..| +.+++.+...+.++ ..
T Consensus 78 ~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p---~~W-p~ll~~L~~~~~~~--~~ 148 (1204)
T 3a6p_A 78 RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WP---QHW-PDMLIELDTLSKQG--ET 148 (1204)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHHHHHTC--HH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---Cc---ccc-hHHHHHHHHHhcCC--HH
Confidence 222212233344444555443 245889998888887765431 11 123 34455555444432 35
Q ss_pred HHHHHHHHHHHHHHcch--------------hhhHHHHHHHHHHHHHHhhc-------------------chhHHHHHHH
Q 000196 256 SIHGSLLAVGELLRNTG--------------EFMMSRYREVAEIVLRYLEH-------------------RDRLVRLSIT 302 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~--------------~~~~~~~~~i~~~ll~~~~~-------------------~~~~vr~~~~ 302 (1874)
.+++++.+|..+.+-.. +.+..++.+++..+...++. .+..++.+++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 57888888888865210 12333444555544444332 2345777888
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000196 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1874)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v 352 (1874)
.++.....|.+-.+.-..-+.+++.+...+..++.|..|++||..++..-
T Consensus 229 ~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 88887777776544321112478888888887788999999999998643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-06 Score=94.71 Aligned_cols=194 Identities=17% Similarity=0.153 Sum_probs=134.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
..+.+...+++++.++|..|+.+|+.++..++.........-.++.+..+..+ +++..++.|+++|+.++...+.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45677788899999999999999999997775432222221122333333344 57889999999999998654432222
Q ss_pred ch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.+ ...++.++..+.+. ++.++..++.+++.++....+.....+ ..++|.+++.+.+. +...|..|+++|+.+
T Consensus 92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 11 13567778888764 788999999999998864333222222 35799999999876 678999999999999
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+......... ..-...++.|.+++.++ ++.+|+.|+.+|+.+.
T Consensus 166 ~~~~~~~~~~-~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQA-VKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHH-HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHH-HHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 8763221111 11135788888988754 7899999999998774
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00046 Score=97.14 Aligned_cols=485 Identities=11% Similarity=0.081 Sum_probs=248.5
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHH-HHHHHh-CCCCHHHHHHHHHHHHhhhcCC----cCccchHHHHHHHHHH
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLS-AIFAAL-NDEDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLL 646 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~-~L~~~l-~D~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l 646 (1874)
.+..+|..+-+.|. .|.. +|+... ...... .+.+..||..|..+|....... |......+|+.+++.+
T Consensus 25 ~~~~~r~~Ae~~L~---~~~~---~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCE---EFKE---KCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHH---HHHH---HCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHHh---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 37778988877663 1111 222232 223333 4557899999999999877543 3333456676666665
Q ss_pred HHHhhC--CCChHhHHHHHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----
Q 000196 647 TYLEQS--SADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---- 719 (1874)
Q Consensus 647 ~~l~~~--~~~~~~r~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---- 719 (1874)
...... ......|...+.++..+++.. ++.. +.+++.++..+.. ++.....++.++..+.+-.
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~------~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ------GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHHcccc
Confidence 432111 024667888899999998773 4333 3444555555543 2344555666666665421
Q ss_pred ----------ccchhhcHHhHHHHHHHHHhcC------------------cchhhHHHHHHHHHHHHhhccccccccccc
Q 000196 720 ----------GFGMRQYISELMPLIVEALLDG------------------AAVTKREVAVSTLGQVVQSTGYVITPYNEY 771 (1874)
Q Consensus 720 ----------g~~~~~~~~~llp~l~~~l~d~------------------~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~ 771 (1874)
...+...++++++.+...+++. .+...+..|+.+++..+...+... .....
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~-i~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH-ITAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH-HHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH-HHhcc
Confidence 0124555667888888777541 112244455666655443322110 00111
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCc
Q 000196 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851 (1874)
Q Consensus 772 p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 851 (1874)
+.+++.++..+.+ +.+|.+|+.||..+....... .... .+ +
T Consensus 248 ~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~-~~~~------------------------~l----i------- 288 (1204)
T 3a6p_A 248 CKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKL-EDRK------------------------PL----M------- 288 (1204)
T ss_dssp SHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCH-HHHG------------------------GG----G-------
T ss_pred chHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCCh-hhHH------------------------HH----H-------
Confidence 2588888877653 478999999998875422100 0000 00 0
Q ss_pred cchHHHHHHHHHHHc--cCC-CchhhHHHHHHHHHHHHHHhC------------CCCCCCccchhHHHHHHHhcCCcchh
Q 000196 852 DYYSTVAINSLMRIL--RDP-SLASYHQKVVGSLMFIFKSMG------------LGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1874)
Q Consensus 852 ~~~~~~vi~~Ll~iL--~d~-s~~~~~~~v~~al~~i~~~~~------------~~~~~~l~~ilp~ll~~l~~~~~~~~ 916 (1874)
..+....+..++..+ .++ ...+.....+..++.++..+| ....+.+..+++.++...+..+..+-
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs 368 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR 368 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence 001011111222221 111 111111122333333332222 13457788999999998887644444
Q ss_pred HHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCccccc--------------c-------cchhHHHHHH
Q 000196 917 DYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRT--------------Y-------RGLPVLHLVQ 971 (1874)
Q Consensus 917 ~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~--------------~-------~~~~~l~~i~ 971 (1874)
...+.....++... .+.+++|++.+++++...+.....|..... . ....+..++.
T Consensus 369 ~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~ 448 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMR 448 (1204)
T ss_dssp HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34333333333221 234678999999998543333222211000 0 0001233444
Q ss_pred HHHHHhhhhhhccchhhHHHHHHhcccc--cc-------------------cCc---hhhHHHHHHHHHH-Hhcch-hhh
Q 000196 972 QLCLALNDEFRTHLPVILPCCIQVLSDA--ER-------------------CND---YTYVLDILHTLEV-FGGTL-DEH 1025 (1874)
Q Consensus 972 ~l~~~l~~~f~~yl~~llp~ll~~l~~~--~~-------------------~~~---~~~~~~il~~l~~-~g~~~-~~~ 1025 (1874)
.++...+...-+|+ .+.+.+.+.+. .. +.. .+....+++++.. +.... .++
T Consensus 449 ~i~~v~p~~~l~~v---~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 449 LACRLDPKTSFQMA---GEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHCHHHHHHHH---HHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhcCHHHHHHHH---HHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 44444444433332 23332332210 00 000 0111222333321 10101 133
Q ss_pred hh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhcccccc-cchhHhHHHHHHHHhCC------------CCHHHHHHHH
Q 000196 1026 MH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLIPRVQV-TGHISSLVHHLKLVLDG------------KNDELRKDAV 1089 (1874)
Q Consensus 1026 ~~-~ilp~l~~~~~--~~~~~~vr~~ai~~l~~l~~~~~~-~~~~~~ii~~l~~~l~~------------~~~~l~~~al 1089 (1874)
+. .++|.++..+- ...++.+|..++.+++.+..-..- .++++.++.-++..+.. .+.+++..|.
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~ 605 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC 605 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH
Confidence 32 35677776642 223566999999999988765332 24777777777766543 1247999999
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1090 DALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1090 ~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
.++..|+..++..+.+|++.|...+..
T Consensus 606 ~al~~L~~~~~~~L~p~~~~i~~~~~~ 632 (1204)
T 3a6p_A 606 SSIIKMCRDYPQLVLPNFDMLYNHVKQ 632 (1204)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887654
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00011 Score=73.95 Aligned_cols=184 Identities=16% Similarity=0.230 Sum_probs=134.1
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
.+++..+...|.|+-..||..|+.++..+++..|...-|.+++.+ .+ +..+ .....-.+-++.+|.+++--|+.+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~-vm---~~ks-EaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLF-SL---LKKS-EAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH-HH---HHHC-CSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-HH---Hhhc-ccCchHHHHHHHHhHHHHhCHHHH
Confidence 367889999999999999999999999999999988777666633 23 2344 333444566789999998888665
Q ss_pred ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.+ +++.+....+- .++.++.+..+++++++...+..+ +.++.-+...+.+. +...|.+|+.-++.+
T Consensus 106 ~~----vVp~lfanyri-----gd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~aLnFi~al 171 (253)
T 2db0_A 106 KS----MIPVLFANYRI-----GDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTALNFIEAM 171 (253)
T ss_dssp HH----HHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTC
T ss_pred Hh----hHHHHHHHHhc-----CCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 44 44455554443 378899999999999999876544 34444555666655 577888998888877
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
.++...-+.|| ++.|+.+|.+ .+.-||-.+..+++-++-+.|-
T Consensus 172 Gen~~~yv~Pf------LprL~aLL~D-~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 172 GENSFKYVNPF------LPRIINLLHD-GDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp CTTTHHHHGGG------HHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHH
T ss_pred hccCccccCcc------hHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHH
Confidence 66554334554 6677887754 4789999999999988755543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=91.68 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCCChhhhhhHHHHHh
Q 000196 18 AGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESNDAAENLGALRAID 94 (1874)
Q Consensus 18 ~~~~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~~~~~r~~~i~ai~ 94 (1874)
.++.....+..+++.|++.+.+.+ .||..|..+.. -..+ ....+- .-+..+.+++++++...+..|+.||.
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~-----~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~ 115 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY-----RNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-----TCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----CChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444455568888999988765444 47777766651 1111 111111 13466778899999999999999999
Q ss_pred HhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc----------
Q 000196 95 ELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---------- 162 (1874)
Q Consensus 95 ~li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---------- 162 (1874)
.|......++...+.+ ..+.|..++....+.++.+.|+.+|..|+... .....++..-++.+++.+.
T Consensus 116 nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 116 NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccc
Confidence 9975421122222222 24556666653457899999999999998742 1222233333444443330
Q ss_pred -------CCCcchhHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhc------CCchhHHHHHHHHHHHHHHHHh
Q 000196 163 -------GDRVEYRRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALR------DPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 163 -------~~~~~~~r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~------D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
...++..+..|..+|+.|+.+.+. .+.. ...+++.++..++ +++..+.+.|..+|+.+.....
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 112346778888999999865433 2221 1233444444333 4667788888888887654322
Q ss_pred hcchh----------------------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH--
Q 000196 227 KRETR----------------------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY-- 279 (1874)
Q Consensus 227 ~r~~~----------------------~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~-- 279 (1874)
...+. ...-|....++.+..-+.......++..|+-+|..|..+.+ ..+...+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 11000 00012233444444444333346788899999988876432 2222222
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHHHHHHHHHHHHHHHhhcCCCC----------cchHHHHHHHH
Q 000196 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFVTNYLKICMNHILTVLRIPAE----------RDSGFIALGEM 348 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~-~f~~~yl~~~~~~Ll~~L~~~~~----------R~~a~~alg~l 348 (1874)
...++.++.++.+.+..|++.++.+|..|+..... ..+ -...+|.|...|..... ...|+.+|+++
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 34577888889999999999999999999975432 222 25688889988876521 23566666666
Q ss_pred Hhhchhhhhhhh-HHHHHHHHHhhcC
Q 000196 349 AGALDGELFHYL-PTITSHLREAIAP 373 (1874)
Q Consensus 349 a~~v~~~~~p~l-~~i~~~l~~~L~~ 373 (1874)
+..-........ ...++.+.+.+..
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 533222211111 2345555555543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0036 Score=80.37 Aligned_cols=568 Identities=11% Similarity=0.062 Sum_probs=287.1
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
...+-|+..+.-..|..+.- =-.+.-.|...-+..+++ +.++++.+..- .+....|--++.++..+-+..|+.+.
T Consensus 132 ~ll~~~~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~-~~~l~~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~~~~ 206 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTHVTY-LLSIILQLLNKFKYNFKE-VRFLVKELILR---ISEDEVKSMMLIIFAELQSSFQKDFD 206 (778)
T ss_dssp HHHHHHHHHHHHTCSSCHHH-HHHHHHHHHHHSCCCSTT-TTHHHHHHHTT---TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchhH-HHHHHHHHHHHcCccccc-hhhHHHHhccc---cChhhhHHHHHHHHHHHHHhCchHHH
Confidence 34444444443234443322 233344455544455566 77777777652 23345677777787888888888888
Q ss_pred hchHHHHHHHH-Hhhc--CCchhHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000196 190 VHVAEFVDAIW-VALR--DPTLAVRERAVEALRACLRVIEKRETR-WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1874)
Q Consensus 190 ~~l~~il~~i~-~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~-~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~ 265 (1874)
..+..+++.++ .+=. +.++.+ .+..++.+++-++.+-... +.. ..+.+.+.+.+....+.+...+.+.+++
T Consensus 207 ~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~---e~~~~~l~~~~~~~~~~~~~~a~L~lLs 281 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLT---KGLSKLFKKRVFEEQDLQFTKELLRLLS 281 (778)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHST---TTHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHcc---ccHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 89999998554 2222 223222 3566666665544321111 000 1112222223322233455667666666
Q ss_pred HHHH--cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchH
Q 000196 266 ELLR--NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSG 341 (1874)
Q Consensus 266 ~ll~--~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a 341 (1874)
.... .+-+++..++-+.+..++. +..+|..+...+-.+..+.+..-. -...+...+...|.+++ .|..|
T Consensus 282 aACi~~~cR~~I~~~~~~~L~~~l~-----~~~ir~lAavvL~KL~~~~~~~~~--si~~La~~~~~~L~~~~~~~~~~A 354 (778)
T 3opb_A 282 SACIDETMRTYITENYLQLLERSLN-----VEDVQIYSALVLVKTWSFTKLTCI--NLKQLSEIFINAISRRIVPKVEMS 354 (778)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHTT-----SGGGHHHHHHHHHHHTGGGTCTTC--CHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHhCCcHHHHHHHHhHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCCCCcC--cHHHHHHHHHHHHhcCCccHHHHH
Confidence 5544 2346676666666555442 356777666666666655432211 13445555566665543 36788
Q ss_pred HHHHHHHHhhchhhhhhh---hHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCCC
Q 000196 342 FIALGEMAGALDGELFHY---LPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVME---PHVRGLLDIMFSAGLS 414 (1874)
Q Consensus 342 ~~alg~la~~v~~~~~p~---l~~i~~~l~~~L~~~-~~~~~~~a~~~l~~l~~~~g~~~~---p~l~~ll~~ll~~~ls 414 (1874)
++.|+-+.... +++.. -+..++.+.+.+... +......++..++.+..... ... +-+..+
T Consensus 355 vEgLaYLSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~-~~~~e~~~l~~L---------- 421 (778)
T 3opb_A 355 VEALAYLSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE-EXXXXXXXXXXX---------- 421 (778)
T ss_dssp HHHHHHHTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC-CCCCCCC---------------
T ss_pred HHHHHHHhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc-ccchhhhhhhhh----------
Confidence 88888875322 22211 234455555555431 11111123333333332211 111 111110
Q ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH-HHHhhccc
Q 000196 415 TTLVDALEQITVS-IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL-ALQTLARF 492 (1874)
Q Consensus 415 ~~l~~~l~~i~~~-~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Al~~L~~~ 492 (1874)
+..++. .|. . + ..+ +..++++.... -...+..
T Consensus 422 -------k~~A~~~~p~----------------------~--~-------------~~d-~~~~~~~~v~~~~~~~l~e- 455 (778)
T 3opb_A 422 -------XXXXXXXXPA----------------------A--D-------------KVG-AEKAAKEDILLFNEKYILR- 455 (778)
T ss_dssp ---------------------------------------------------------CC-THHHHHHHHHHHHHHHTTT-
T ss_pred -------hhhccccCcc----------------------c--C-------------ccc-ccccchHHHHHHHHHHHHH-
Confidence 000000 000 0 0 000 00000000000 0111111
Q ss_pred ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhc
Q 000196 493 NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVA 571 (1874)
Q Consensus 493 ~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~ 571 (1874)
....| .+..++.++++.+|..|+.++..+.... .. ...++ ...++.|+....+
T Consensus 456 ----aGvIp----~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~-----------------R~~lvqqGal~~LL~lL~s 509 (778)
T 3opb_A 456 ----TELIS----FLKREMHNLSPNCKQQVVRIIYNITRSK-NF-----------------IPQLAQQGAVKIILEYLAN 509 (778)
T ss_dssp ----TTHHH----HHHHHGGGSCHHHHHHHHHHHHHHHTSG-GG-----------------HHHHHHTTHHHHHHHHTTC
T ss_pred ----CcCHH----HHHHHHcCCCHHHHHHHHHHHHHHcCCH-HH-----------------HHHHHHCCCHHHHHHHHhc
Confidence 11112 2335567788999999999888885321 00 01111 2345556655444
Q ss_pred CCCh--hHHHHHHHhccCC-CCcchhhc-----cHhhHHHHHHHhCC-CCH-------------HHHHHHHHHHHhhhcC
Q 000196 572 DADV--TVRHSIFSSLYGN-RGFDDFLA-----QADCLSAIFAALND-EDF-------------DVREYAISVAGRLSEK 629 (1874)
Q Consensus 572 d~~~--~vR~~~l~~l~~~-~~f~~~L~-----~~~~l~~L~~~l~D-~~~-------------~VR~~a~~~l~~l~~~ 629 (1874)
.++. .+|..+..+|... ..-++.+. ..+.++.|+..|.. +.. --+..|+.+|..|+..
T Consensus 510 ~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~ 589 (778)
T 3opb_A 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS 589 (778)
T ss_dssp C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC
Confidence 4333 2777776666310 00011110 12578889988872 221 1266788899999886
Q ss_pred Cc---Cccc-hHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc-ccch----HH---HHHHHHHHhhccC
Q 000196 630 NP---AYVL-PALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI-RPYI----AP---IHKALVARLLEGT 696 (1874)
Q Consensus 630 ~p---~~v~-p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~-~py~----~~---il~~ll~~l~~~~ 696 (1874)
.. ..+- ..++ .-.++.+..+..+ ++...|..|+++++.++... ..+ ..++ +. =++.|+..+..+
T Consensus 590 ~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~- 666 (778)
T 3opb_A 590 ETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLS- 666 (778)
T ss_dssp CSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-
T ss_pred CcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCC-
Confidence 52 1111 1222 1233445555556 56788999999999999643 222 2222 11 267788888653
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhh----cc-cccccc
Q 000196 697 GINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDG-AAVTKREVAVSTLGQVVQS----TG-YVITPY 768 (1874)
Q Consensus 697 ~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~----~~-~~i~p~ 768 (1874)
+..++.++..+++.++...+......+ ...++.++..+++. ++.+.|..++.++..+++. .+ ..+.-+
T Consensus 667 ----D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~ 742 (778)
T 3opb_A 667 ----DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLL 742 (778)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHH
T ss_pred ----CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHH
Confidence 778888888888877543322112222 25788888888874 4678999999999999973 22 233334
Q ss_pred ccchHHHHHHHHHhcCCC
Q 000196 769 NEYPQLLGLLLKMLNGEL 786 (1874)
Q Consensus 769 ~~~p~ll~~Ll~~l~~~~ 786 (1874)
.+.+.+.+.|.++++.+.
T Consensus 743 ~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 743 QENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HSCHHHHHHHHHHHSSSS
T ss_pred hcChHHHHHHHHHHhCCC
Confidence 445778888888887654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.7e-05 Score=92.92 Aligned_cols=401 Identities=12% Similarity=0.080 Sum_probs=204.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
++.++..|+.++++++..|...|+.++..++..-..... ..+..++..+ .+ +++..++.|+++|..++...++.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH-cC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 556667777788899999999999999776532101111 1222333333 34 57888999999999998643322111
Q ss_pred ch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhh-cHHhHHHHHHHHHh--------cC-------c
Q 000196 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALL--------DG-------A 742 (1874)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~llp~l~~~l~--------d~-------~ 742 (1874)
.+ ...++.|+..++.. .++.++..++.+|+.|+.. +.... .+...+|.+++.|. +. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13466777778732 2678999999999999875 33333 33478999999983 11 1
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcc----cCccchhhhc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIMGA----LDPHAHKRNQ 813 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~-----~~~~~vr~~al~~lg~lga----ldp~~~~~~~ 813 (1874)
+......|+++|+.++.. .....-..+.+..++.|+.+|++ ..+.++...++.++..+.. ..|.......
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344999999999865 22111111223566677766653 1233455555555544321 0010000000
Q ss_pred c-cCCC--cccc---cccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHH
Q 000196 814 Q-LSGS--HGEV---TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887 (1874)
Q Consensus 814 ~-~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~ 887 (1874)
. .... ..+. ......... ....+....+........+..+..-+++.|+..|.+.+.......++.|+.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HTC-----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccchhhccchhhh-hccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 0 0000 0000 000000000 0000000000000001112234456778888888765544555566667666643
Q ss_pred HhCCCCCCC-----c--cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccccc
Q 000196 888 SMGLGCVPY-----L--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRT 960 (1874)
Q Consensus 888 ~~~~~~~~~-----l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~ 960 (1874)
.-+. ..++ + ...+|.++..+++.++.++..+.+.|+.+... .
T Consensus 314 ~~~~-~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~---------------------------- 362 (457)
T 1xm9_A 314 SKGL-MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P---------------------------- 362 (457)
T ss_dssp CSSS-HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G----------------------------
T ss_pred CcCc-chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H----------------------------
Confidence 2111 0001 1 36788899988888877777777766665420 0
Q ss_pred ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccccc--CchhhHHHHHHHHHHHhcchhhhhh-----hhHHHH
Q 000196 961 YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERC--NDYTYVLDILHTLEVFGGTLDEHMH-----LLLPAL 1033 (1874)
Q Consensus 961 ~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~--~~~~~~~~il~~l~~~g~~~~~~~~-----~ilp~l 1033 (1874)
.+..++. ...+|.+++.|...+.. .+..+...++.++..+...-+++.. -.+|.|
T Consensus 363 ----~~~~~i~--------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 363 ----LLHRVMG--------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp ----GGHHHHH--------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred ----HHHHHHH--------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 1111111 12456677777543211 0112233344444333221122221 246777
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhhcccc
Q 000196 1034 IRLFKVDAPVDIRRAAIETLTRLIPRV 1060 (1874)
Q Consensus 1034 ~~~~~~~~~~~vr~~ai~~l~~l~~~~ 1060 (1874)
+++...+.+..+++.|...|..+....
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 777765446778888888887776543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=88.95 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=134.4
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
..++|..++. +.|.+++..|+++|+.|+.........+++ ..++.+++.|.++ +...|..|+.+|+.++.+.+..-.
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567888886 578999999999999998642212222222 2566777777644 567889999999999976554322
Q ss_pred hch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000196 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1874)
Q Consensus 190 ~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1874)
..+ ...++.++..|.++++.||..|+.+|+.+... ........ -...++.+..-+.++ +.+++..++.+|..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 111 24678899999999999999999999987531 11111111 234667777777766 468899999999999
Q ss_pred HHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 268 LRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 268 l~~~~~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
.....+....-. ...++.+...+.+.++.+|+.++.+|..++.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 875333221111 1356778888899999999999999998874
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.18 E-value=7.5e-05 Score=93.95 Aligned_cols=314 Identities=11% Similarity=0.048 Sum_probs=186.3
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHH-HH-HHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFS-RF-MDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~-~~-~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
+..+++.|++.+.+.+ .|+..|+.+.. . .+... .. -....+.+.+++++++...+..|..++..|.... .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~----~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF----Q--DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTS----S--CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHc----C--ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 5678888988875544 48777777651 1 11111 11 1223566778888999999999999999997541 1
Q ss_pred cchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--------CC-------C
Q 000196 103 ENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------GD-------R 165 (1874)
Q Consensus 103 ~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~--------~~-------~ 165 (1874)
+....+.+ ..+.|..++..+.+.++.+.|+++|+.|+.. ......+++.-++.+++.|. ++ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 12222221 1456666665345899999999999999976 22333355567777777772 11 1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHhhcC------CchhHHHHHHHHHHHHHHHHhhcch-------
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRD------PTLAVRERAVEALRACLRVIEKRET------- 230 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~~~l~D------~~~~VR~aA~~al~~~~~~i~~r~~------- 230 (1874)
+......|+.+|+.|+.+ |.....-. +..++.++..|++ ++..+.+.|..+|+.+........+
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344888999999977 54221111 1455555555543 5667777777777665311100000
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 231 ----------------------------------------RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 231 ----------------------------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
..+.-|....++.+..-|....+.+++.+|+-+|..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000111223333333343333457788888888887764
Q ss_pred chh---hh-HHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC-c-----
Q 000196 271 TGE---FM-MSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE-R----- 338 (1874)
Q Consensus 271 ~~~---~~-~~~~--~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~-R----- 338 (1874)
.++ .+ +..+ ...++.++.++.+.+..|++.++++|..++....- ....-...++.|...|..... +
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 433 22 2222 23567888889999999999999999999874322 111224678888888876431 1
Q ss_pred --chHHHHHHHHHh
Q 000196 339 --DSGFIALGEMAG 350 (1874)
Q Consensus 339 --~~a~~alg~la~ 350 (1874)
..++.+|+++..
T Consensus 393 v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 393 ILSSACYTVRNLMA 406 (457)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 256666666653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0013 Score=80.69 Aligned_cols=357 Identities=12% Similarity=0.108 Sum_probs=209.9
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYE 1365 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~E 1365 (1874)
++....+.|.|..|+.+++..+... ++.......|..+|.+.|+.|.+.-.++.+... .. ....+..|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 5677788899999998887766532 344567778899999999999988777643321 11 122344588
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCCh
Q 000196 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1874)
+.|+|++|+..|++.+...++. .+...++..++...|+|+.-....+... .+..... ....+.....+|+|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----RSDLGNLLKALGRL 151 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH----HHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHccCH
Confidence 9999999999999988754432 3456778888999999865554443211 1111111 11233445556666
Q ss_pred hhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000196 1444 DQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1874)
Q Consensus 1444 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~ 1523 (1874)
+.-.++....-... ......+..+-.+ .....+.++.+.
T Consensus 152 ~~A~~~~~~al~~~----------------p~~~~~~~~l~~~------------------~~~~g~~~~A~~------- 190 (388)
T 1w3b_A 152 EEAKACYLKAIETQ----------------PNFAVAWSNLGCV------------------FNAQGEIWLAIH------- 190 (388)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHH------------------HHTTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhC----------------CCCHHHHHHHHHH------------------HHHcCCHHHHHH-------
Confidence 65554333211000 0000001100000 000111111111
Q ss_pred CCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000196 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1874)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1874)
..++.+. +.| ++...|...+.+..+.|+++.|...+.++...+|.
T Consensus 191 ---------------------------~~~~al~-----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-- 235 (388)
T 1w3b_A 191 ---------------------------HFEKAVT-----LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-- 235 (388)
T ss_dssp ---------------------------HHHHHHH-----HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--
T ss_pred ---------------------------HHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--
Confidence 1111111 122 34667888888888888888888888887776542
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000196 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1874)
Q Consensus 1604 ~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~ 1683 (1874)
.+.+....+..++..|+ ..+|+..++..+.... . ...++..+|....
T Consensus 236 --------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p------------------~----~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 236 --------HAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP------------------H----FPDAYCNLANALK 282 (388)
T ss_dssp --------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS------------------S----CHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC------------------C----CHHHHHHHHHHHH
Confidence 35666677777888884 5788888877654210 0 0122344444443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc
Q 000196 1684 ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763 (1874)
Q Consensus 1684 ~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~ 1763 (1874)
.. ...++....|.++++.+|+...+|..+|....+ . .-...|++.|-+++... .
T Consensus 283 ~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~-------g~~~~A~~~~~~al~~~------p 336 (388)
T 1w3b_A 283 EK------GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-------Q-------GNIEEAVRLYRKALEVF------P 336 (388)
T ss_dssp HH------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------T-------TCHHHHHHHHHHHTTSC------T
T ss_pred Hc------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------c-------CCHHHHHHHHHHHHhcC------C
Confidence 32 235677888888888888888888877765432 1 12346778888877663 2
Q ss_pred chHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1764 ~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
........+-.+++..|..++....+++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445566677777888877777666666543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.6e-05 Score=88.80 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=134.2
Q ss_pred hhHHHHHH-HhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc
Q 000196 599 DCLSAIFA-ALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 599 ~~l~~L~~-~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1874)
..++.++. +++.++++||..|+.+||.++..+|..-.-.+. ..+..++.-+..+ .+...|+.|+++|+.+++..+..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHH
Confidence 35778888 999999999999999999999988742100011 1233344444444 46788999999999999877654
Q ss_pred cccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHH
Q 000196 677 IRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVST 753 (1874)
Q Consensus 677 ~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~ 753 (1874)
...+.. ..++.|+..+++. +..++..++.+|+.++....+ ...++ ..++|.++..|... +..+|+.|+.+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~a 232 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHH
Confidence 444443 5777888888764 788999999999999876333 33333 25889999999865 67899999999
Q ss_pred HHHHHhhccccc----cccccchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Q 000196 754 LGQVVQSTGYVI----TPYNEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 754 Lg~l~~~~~~~i----~p~~~~p~ll~~Ll~~l~-~~~~~~vr~~al~~lg~l 801 (1874)
|+.++....... .+...+..+++.....++ .+...++...+.+++-.+
T Consensus 233 L~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 233 LCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999998743221 111224566666666666 333456666666665543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.024 Score=72.96 Aligned_cols=226 Identities=12% Similarity=0.147 Sum_probs=136.5
Q ss_pred hcCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhCCCCHH---HHHHHHHHHHhhh-cCCcCccchHH--HH
Q 000196 570 VADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALNDEDFD---VREYAISVAGRLS-EKNPAYVLPAL--RR 640 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~---~~~~f~~~L~~~~~l~~L~~~l~D~~~~---VR~~a~~~l~~l~-~~~p~~v~p~l--~~ 640 (1874)
...+++.+|..+..+|. .+...-..+.+...++.|+..+.+.... +|..|..+|.++. ..+|..+.+.. ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 34567778877666552 2222222334445688888888766544 8999999999988 44554432200 02
Q ss_pred HHHHHHHHHhhCCCC------------hHhHHHHHHHHHHHHHhCc---ccccc-chH--HHHHHHHHHhhccCCCCCCh
Q 000196 641 HLIQLLTYLEQSSAD------------NKCREESAKLLGCLIRNCE---RLIRP-YIA--PIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 641 ~l~~~l~~l~~~~~~------------~~~r~~a~~~L~~l~~~~~---~~~~p-y~~--~il~~ll~~l~~~~~~~~~~ 702 (1874)
.+..++.-|..+++. ...+-+|+.+|..++.... +.++. .+. ..++.+...+.++ +.
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-----n~ 620 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-----NV 620 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-----SH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-----CH
Confidence 222333322211011 1236689999999998652 22222 222 3556666666653 77
Q ss_pred hHHHHHHHHHHHHHHhcccch-hhcH----Hh---HHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 703 GIISGVLVTVGDLARVGGFGM-RQYI----SE---LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~-~~~~----~~---llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
.++.+++.++..|+... +.+ ..++ +. =++.++..+.. .+.+.|.+|.++|+.+......+..-....+..
T Consensus 621 ~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll~~~~g 698 (778)
T 3opb_A 621 PLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698 (778)
T ss_dssp HHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcccc
Confidence 89999999999998632 222 1232 11 27778877754 578899999999998865444332222334578
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhc
Q 000196 775 LGLLLKMLNGE-LVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 775 l~~Ll~~l~~~-~~~~vr~~al~~lg~lg 802 (1874)
++.++++++.. .+.++|..++.++..+.
T Consensus 699 i~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 699 IENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 88888888752 47889988888877664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=94.86 Aligned_cols=247 Identities=9% Similarity=0.020 Sum_probs=159.2
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc
Q 000196 83 AAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 83 ~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1874)
...|.||++|++-.--+. ++ ....+.|..++. .++..++..|+-++|.+-.. +-..+.++.++..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS-~~-----eev~e~L~~~L~-dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~---- 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGS-AN-----IEVYEALKEVLY-NDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQ---- 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTC-CC-----HHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHh----
Confidence 567899999999874442 22 134566667664 34556677899999976443 223445555555444
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++.++..|.++++.|+.+.-+.+.... .++ ..| .|.++.+|.+|+.|++.... . ......++.++
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e~~~----~li----~~L~~~~dp~vRygaa~alglAya--G----TGn~~aIq~LL 583 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQELAD----DLI----TKMLASDESLLRYGGAFTIALAYA--G----TGNNSAVKRLL 583 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGGGGH----HHH----HHHHHCSCHHHHHHHHHHHHHHTT--T----SCCHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCChHHHH----HHH----HHHHhCCCHHHHHHHHHHHHHHhc--C----CCCHHHHHHHH
Confidence 345667788899999988777665432 333 333 37899999999998873211 1 11123344555
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~-~~~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
..+.. +. +.++|.+|+.+|+.++-+..+ .+..++.. .++.++.||..+..++|.++.-.+.
T Consensus 584 ~~~~~---d~-~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------ 645 (963)
T 4ady_A 584 HVAVS---DS-NDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------ 645 (963)
T ss_dssp HHHHH---CS-CHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred HHhcc---CC-cHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence 55543 33 357899999999987654332 22333332 3568999999999999999865553
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCC
Q 000196 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~ 375 (1874)
+.++..|...+.+.. .|..|+.+||.++........|.+..+...+.....+++
T Consensus 646 -~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 646 -QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred -HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 344554444454443 488999999999876666556777777777777776543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0015 Score=85.61 Aligned_cols=291 Identities=15% Similarity=0.137 Sum_probs=174.1
Q ss_pred HHHHhhhcc---CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCC------
Q 000196 504 RDSVVLYLD---DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD------ 574 (1874)
Q Consensus 504 ~~~~~~~l~---~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~------ 574 (1874)
...+.+|+. +.++.+|..|..+++.+.... .. +++.-|... +.+++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--------------------~~----~~~~lL~~~-L~~~~~~~~~~ 448 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--------------------GR----DTTDYLKNI-IVENSGTSGDE 448 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--------------------TH----HHHHHHHHH-HHHHSSCCSCH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--------------------cH----HHHHHHHHH-HcCcccccccc
Confidence 345567776 567899988888887765311 01 122222222 22223
Q ss_pred --hhHHHHHHHhccCCCCcchhh--ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhh--hcCCcCccchHHHHHHHHHHHH
Q 000196 575 --VTVRHSIFSSLYGNRGFDDFL--AQADCLSAIFAALNDEDFDVREYAISVAGRL--SEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 575 --~~vR~~~l~~l~~~~~f~~~L--~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l--~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
+.+|..+.-+|+. -+. ...+++..|...+.|++..+|..|.-.+|-+ ...|+ +.+..++..
T Consensus 449 ~~~~ir~gAaLGLGl-----a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--------~ai~~LL~~ 515 (963)
T 4ady_A 449 DVDVLLHGASLGIGL-----AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--------EAIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHH-----HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--------HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--------HHHHHHHHH
Confidence 6788887777752 011 1246788888888888888898888888876 33332 112222332
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1874)
+..+ .+...|..++..||.+.-..++. ++.++ ..+... .++.++.+++.++|--- .|..-.
T Consensus 516 ~~e~-~~e~vrR~aalgLGll~~g~~e~----~~~li----~~L~~~----~dp~vRygaa~alglAy--aGTGn~---- 576 (963)
T 4ady_A 516 SQET-QHGNITRGLAVGLALINYGRQEL----ADDLI----TKMLAS----DESLLRYGGAFTIALAY--AGTGNN---- 576 (963)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHTTTCGGG----GHHHH----HHHHHC----SCHHHHHHHHHHHHHHT--TTSCCH----
T ss_pred Hhcc-CcHHHHHHHHHHHHhhhCCChHH----HHHHH----HHHHhC----CCHHHHHHHHHHHHHHh--cCCCCH----
Confidence 3233 34567777888888875444433 33333 334432 37788887777766322 222222
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 729 ~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
..+..++..+.+..+..+|..|+.+||.+.-... +..+.++..|....++.+|+.+..++|.+++=.|.
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~- 645 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL- 645 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-
Confidence 3334344444333456799999999998754321 22344445454455799999999999998742221
Q ss_pred hhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHH
Q 000196 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKS 888 (1874)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~ 888 (1874)
..++..|.+.+.|+.. .+...++.|+..|...
T Consensus 646 -----------------------------------------------~~aid~L~~L~~D~d~-~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 -----------------------------------------------QSAIDVLDPLTKDPVD-FVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHSTT
T ss_pred -----------------------------------------------HHHHHHHHHHccCCCH-HHHHHHHHHHHHHhcC
Confidence 3466777787777754 4455666677766554
Q ss_pred hCCCCCCCccchhHHHHHHHhc
Q 000196 889 MGLGCVPYLPKVLPDLFHTVRT 910 (1874)
Q Consensus 889 ~~~~~~~~l~~ilp~ll~~l~~ 910 (1874)
......|.+.+++..+...+.+
T Consensus 678 tnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred CccccchHHHHHHHHHHHHHhc
Confidence 4444557788888888887765
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=66.40 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=159.7
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
.++.+.+..++...-|..+..|+..+..++.-...-..+.+.++.-.++ .+.-...-...++++|.++.. .+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~----ksEaIpltqeIa~a~G~la~i----~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK----KSEAIPLTQEIAKAFGQMAKE----KP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH----HCCSHHHHHHHHHHHHHHHHH----CH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh----hcccCchHHHHHHHHhHHHHh----CH
Confidence 4456666677777788899999999888876542222334443333333 244466667889999999986 78
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
+.|...++-.+.-.+-. +...|..-..+|++++..-|..+. .++.-|...+.||+..=|-+|.+-++++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al------ 171 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM------ 171 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC------
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH------
Confidence 89999999888776532 556788888899999999888754 6777777888899976677776654432
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh
Q 000196 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307 (1874)
Q Consensus 228 r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~ 307 (1874)
+..+..+...++|.+..-|.+.+ .-+|-++...|+.+.+.. |.++.++...+.-+++++..|+..|.+.++.
T Consensus 172 --Gen~~~yv~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 172 --GENSFKYVNPFLPRIINLLHDGD-EIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --CTTTHHHHGGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred --hccCccccCcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 12455677888999988888764 678888888999888643 5577777777777899999999999999988
Q ss_pred Hhh
Q 000196 308 IAH 310 (1874)
Q Consensus 308 la~ 310 (1874)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.006 Score=79.78 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|..++.+..+.|+++.|...+.++....+. .+......+..+...|+ ..+|+..+++++...
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG----------THLPYLFLGMQHMQLGN---ILLANEYLQSSYALF 471 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----------CSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35678888888888888888888888887765442 24555666677777774 578888888766431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------ccc-chHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATK-WGKAWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~-~~k~w~~wA 1719 (1874)
.. + ...+..+|...... ...++..+.|+++.+. +|+ +..+|..+|
T Consensus 472 ~~------------------~----~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 472 QY------------------D----PLLLNELGVVAFNK------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp CC------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred CC------------------C----hHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 10 0 12233344433332 2356778888888777 444 367787777
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
..+.+. .-...|++.|-+++... + ........+..++...|..++..+.+++.+.
T Consensus 524 ~~~~~~--------------g~~~~A~~~~~~~~~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 524 HAYRKL--------------KMYDAAIDALNQGLLLS-----T-NDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHS-----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--------------cCHHHHHHHHHHHHHhC-----C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 665541 12346777777777664 2 2234456666777777887776666666554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00034 Score=81.39 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=119.4
Q ss_pred hhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHh-hcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHh
Q 000196 84 AENLGALRAIDELIDVALGENASKVSK--FSNYMRT-VFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALD 159 (1874)
Q Consensus 84 ~~r~~~i~ai~~li~~~~~~~~~~~~~--~~~~L~~-~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~ 159 (1874)
..|..|+..|..+++-. ++...+.+ -.+.|.. ++. +.+++++..|++++|.++.........+++ .-++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 46667777777776532 12221111 1234555 775 568999999999999998752222222333 25667777
Q ss_pred hhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-
Q 000196 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY- 237 (1874)
Q Consensus 160 ~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~- 237 (1874)
.|.++.+...|..|+.+|+.++.+.|......+ ...++.+...|+++++.||..|+.||+.+... ....+....
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~----~~~~~~~vv~ 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG----HPEHKGTLCS 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC----ChHHHHHHHH
Confidence 776555567889999999999988665333222 25788899999999999999999999987653 111122222
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
..+++.+..-|..++ .+++..++.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 246666666666663 67899999999999875
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00078 Score=83.25 Aligned_cols=360 Identities=13% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHhhhcCCC------------hhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEA-FSRFMDQLYDRISGLLESND------------AAE 85 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~-~~~~~~~l~~~i~~l~~s~~------------~~~ 85 (1874)
.+.--+.+..+..+|.+.+.+ + . .+.+. +. +-+++. ..-.-.-.++.+.+++++++ ..-
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~-~-~---~~~ll-~~--~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~ 98 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKD-D-M---SRTLL-AM--SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98 (458)
T ss_dssp ------------------CCH-H-H---HHHHH-HH--HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred cCchHHHHHHHHHHhcCCCHH-H-H---HHHHH-HH--HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence 455566778888888665433 1 1 22222 11 222222 10111223555667776533 477
Q ss_pred hhhHHHHHhHhhccccCcchh-HH----------HHHHHHHHhhcccCC-ChH-----HHH-------HHHHHHHHHhhh
Q 000196 86 NLGALRAIDELIDVALGENAS-KV----------SKFSNYMRTVFEVKR-DRE-----ILV-------LASKVLGHLARA 141 (1874)
Q Consensus 86 r~~~i~ai~~li~~~~~~~~~-~~----------~~~~~~L~~~l~~~~-d~~-----v~~-------~aa~~lg~l~~~ 141 (1874)
|.-|.-|+.+++....+.... .. +.+.+.+..++.... +.+ |.. .|.++|++++..
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 888999999998886443211 11 111222333343210 111 444 788999988653
Q ss_pred CCCcchHHHH-HHHHHHHhhhcC----------CCcchhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHhhcCCch
Q 000196 142 GGAMTADEVE-FQVKMALDWLRG----------DRVEYRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTL 208 (1874)
Q Consensus 142 ~g~~~~~~v~-~~~~~~~~~l~~----------~~~~~~r~aA~~~l~~la~~~p~--~~~~~l~~il~~i~~~l~D~~~ 208 (1874)
.. ....+++ .-++.++..|.. ..+...+..|+.+|..|+.+.+. .+.......+|.++..|+++++
T Consensus 179 ~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 179 EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 10 1111111 134444444421 12234577888999999977542 1222245678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH---HHHHH
Q 000196 209 AVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY---REVAE 284 (1874)
Q Consensus 209 ~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~---~~i~~ 284 (1874)
.|++.|+.||+.+... .+...+.... ...++.+..-|....+.+++..++.+|..|...+.+ ....+ ...++
T Consensus 258 ~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~-nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE-NKADICAVDGALA 333 (458)
T ss_dssp HHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHhcCcHH
Confidence 9999999999886421 0111222222 234556666543333467788888888888763322 12222 23556
Q ss_pred HHHHHhhcchh----HHHHHHHHHhHhHhhh--ChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000196 285 IVLRYLEHRDR----LVRLSITSLLPRIAHF--LRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 285 ~ll~~~~~~~~----~vr~~~~~~i~~la~~--~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~ 355 (1874)
.+...+.+.+. .+++.++.+|..++.+ ..++...... ...++.|...|++.+ .+..|..+|++++..-.+.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~ 413 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH
Confidence 66677766543 4888899999998863 2222222112 356888888888765 3678899999987433322
Q ss_pred hhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 356 LFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 356 ~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..++ ...++.+.+.+...+.+.+..+..++..|+..
T Consensus 414 -~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 414 -QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp -HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2222 23566666666544433345677777777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.011 Score=77.17 Aligned_cols=165 Identities=13% Similarity=0.027 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++..+.+.|+++.|...+.++.+..+. .+.+....+......|+ ..+|+..+++.+.....
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPE----------KAVTWLAVGIYYLCVNK---ISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------SHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence 445555555556666666666555555443221 23444445555555553 45566665554431100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
. ...-..++.+|...|+ .++.++.|+++.+..|+...+|...|..+...
T Consensus 406 ~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 454 (597)
T 2xpi_A 406 F---------------GPAWIGFAHSFAIEGE-------------HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--- 454 (597)
T ss_dssp C---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH---
T ss_pred C---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc---
Confidence 0 0001122333333332 35566666666666666666666666554331
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.-...|++.|-+++... +. .......+..+++..|..++..+.+++.+.
T Consensus 455 -----------g~~~~A~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 455 -----------GNILLANEYLQSSYALF-----QY-DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp -----------TCHHHHHHHHHHHHHHC-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12345666776666653 12 234455666777777777766666655543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00069 Score=85.75 Aligned_cols=356 Identities=14% Similarity=0.067 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
++-++.|+..|... ++.+...++.+|..++....+ ....+ ...+|.+++.|... +..+++.|+++|+.++.
T Consensus 47 ~~~i~~LV~~L~s~-----~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 47 QPELPEVIAMLGFR-----LDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHc
Confidence 34456667777754 677888888888888753222 11112 24689999999865 67899999999999986
Q ss_pred hccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccc
Q 000196 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEF 839 (1874)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1874)
..+........--.-++.|+.+|++..+..++..+..+|..+...+..+....
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~--------------------------- 172 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV--------------------------- 172 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH---------------------------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH---------------------------
Confidence 42111000000124577777788765567889998888887765333221111
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHc-----------------cCCCchhhHHHHHHHHHHHHHHhC--CCCCCCccch
Q 000196 840 PMDLWPSFATSEDYYSTVAINSLMRIL-----------------RDPSLASYHQKVVGSLMFIFKSMG--LGCVPYLPKV 900 (1874)
Q Consensus 840 ~~~l~~~~~~~~~~~~~~vi~~Ll~iL-----------------~d~s~~~~~~~v~~al~~i~~~~~--~~~~~~l~~i 900 (1874)
.-.++.|++.| ++.........+..+|.++...-. ...+--.+-+
T Consensus 173 ----------------~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gl 236 (584)
T 3l6x_A 173 ----------------DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGL 236 (584)
T ss_dssp ----------------HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTH
T ss_pred ----------------hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCc
Confidence 00122232322 111111222223333333321000 0000012345
Q ss_pred hHHHHHHHhcC------CcchhHHHHHHHHHHHHHHHHhHH---Hh-----------------------HHHHHHHHHHh
Q 000196 901 LPDLFHTVRTC------DDYLKDYITWKLGTLVSIVRQHIR---KY-----------------------LQELFSLISEL 948 (1874)
Q Consensus 901 lp~ll~~l~~~------~~~~~~~~~~~l~~lv~~~~~~i~---~y-----------------------~~~i~~~i~~~ 948 (1874)
++.++..++.+ +....+.++..|..|.......+. .| -+.+++.+...
T Consensus 237 i~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~L 316 (584)
T 3l6x_A 237 VDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316 (584)
T ss_dssp HHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHH
Confidence 66777766642 234556666666555543321110 01 12233333333
Q ss_pred hcCCCCCcccccccchhHHHHHHHHHHHh---hhhhhccc--hhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc--
Q 000196 949 WSSFSLPATNRTYRGLPVLHLVQQLCLAL---NDEFRTHL--PVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT-- 1021 (1874)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~l---~~~f~~yl--~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~-- 1021 (1874)
+..... +..+..+..++..++..- ...+...+ ...+|.|++.|...+ ..+...+..++..+...
T Consensus 317 L~~s~~-----~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~----~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 317 LKESKT-----PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH----ERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHCCC-----HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC----HHHHHHHHHHHHHHHTTCS
T ss_pred HccCCC-----HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC----HHHHHHHHHHHHHHhCChh
Confidence 322110 011123445555554321 12222222 356899999996532 23444455555544321
Q ss_pred hh-hhhhhhHHHHHHhhcCCC-------cHHHHHHHHHHHHhhccccc--ccch-hHhHHHHHHHHhCCC--CHHHHHHH
Q 000196 1022 LD-EHMHLLLPALIRLFKVDA-------PVDIRRAAIETLTRLIPRVQ--VTGH-ISSLVHHLKLVLDGK--NDELRKDA 1088 (1874)
Q Consensus 1022 ~~-~~~~~ilp~l~~~~~~~~-------~~~vr~~ai~~l~~l~~~~~--~~~~-~~~ii~~l~~~l~~~--~~~l~~~a 1088 (1874)
.. ..-.-.+|.+++++..+. ..++...|+.+|+.|+.... -... -...|+.|+..+.++ .+.+++.|
T Consensus 388 ~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHH
Confidence 11 122457899999997541 46888999999998865411 1111 224677888899875 67899999
Q ss_pred HHHHHHHH
Q 000196 1089 VDALCCLA 1096 (1874)
Q Consensus 1089 l~~L~~l~ 1096 (1874)
..+|+.|.
T Consensus 468 a~vL~nl~ 475 (584)
T 3l6x_A 468 ALVLQTIW 475 (584)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.022 Score=68.30 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=192.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.+|....+.|.|..|+.+++...... ++.....-.+..+|..+|+.+.+...++..... . .....+..+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56778888999999999988776532 334567788999999999999998888754321 1 112334468
Q ss_pred HHhcCHHHHHHHHHHHHhccCCC-chhHHhHhh------------HhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNP-HIVLEATLG------------RMRCLAALARWEELNNLCKEYW--TPAEPAARLEM 1429 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~-~~~~~~~~g------------~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~ 1429 (1874)
.+.|+|++|+..|++.+...+.. +. .+.... +-.++...|+|+.-....+... .+... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 156 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----EL 156 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HH
Confidence 89999999999999988654410 11 122222 2478888888877666555422 11122 22
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHH-HHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000196 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTF-FRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1874)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1874)
....+.+...+|+|+.-..+....-... ......+ ..+......++
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~------------------ 203 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK---------------SDNTEAFYKISTLYYQLGD------------------ 203 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------SCCHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCC------------------
Confidence 2345667788888888776655432110 0000011 11111111111
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000196 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1874)
Q Consensus 1509 ~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a 1588 (1874)
.++.+++ +++=+...+.+...|...-.+. .....+..+....+.|+++.|
T Consensus 204 --~~~A~~~--------------------~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 204 --HELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp --HHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHH--------------------HHHHHhhCccchHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 1111111 1111111122222332222221 245566678889999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000196 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1874)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1874)
...+.++....|... . .........+..+...|+ ..+|+..++..+.....
T Consensus 254 ~~~~~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~-------------------- 304 (359)
T 3ieg_A 254 TSKYESVMKTEPSVA-E-----YTVRSKERICHCFSKDEK---PVEAIRICSEVLQMEPD-------------------- 304 (359)
T ss_dssp HHHHHHHHHHCCSSH-H-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHHHhcCCCch-H-----HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcc--------------------
Confidence 999999887655310 0 001234456788888885 68999999987753110
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1669 ~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
...++..+|...... ...++....|+++++++|+...+|..++.....
T Consensus 305 --~~~~~~~~~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 --NVNALKDRAEAYLIE------EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 123444555554443 246789999999999999999999988877554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.011 Score=72.37 Aligned_cols=334 Identities=14% Similarity=0.129 Sum_probs=192.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++.+..+++.+.+|..+.+...... +......-.|..+|.+.|+.+.+...++.+... .+ .......+
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 56777788889999998887766432 344567788999999999999999888754321 11 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+.|+|++|+..|++.+...++. ......+-.++..+|+|+.-....+... .+..... ....+.+....|+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA----WSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCC
Confidence 89999999999999988765443 3445667788999999987665554321 1111111 1123456677888
Q ss_pred hhhHHHHHhhcCC-CCcchhhccccccccCCCCCchHHHH-HHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcC
Q 000196 1443 WDQMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFFR-AVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTL 1520 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~-a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~ 1520 (1874)
++.-..+....-. ++ .....++. +......++ |..|.. .+++++.. .
T Consensus 185 ~~~A~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~~~----~~~A~~---------~~~~al~~--~ 233 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP----------------NFLDAYINLGNVLKEARI----FDRAVA---------AYLRALSL--S 233 (388)
T ss_dssp HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHTTTC----TTHHHH---------HHHHHHHH--C
T ss_pred HHHHHHHHHHHHhcCC----------------CcHHHHHHHHHHHHHcCC----HHHHHH---------HHHHHHhh--C
Confidence 8776655443211 00 00001100 111111111 111111 11112111 1
Q ss_pred CCCCCchhhHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 000196 1521 PVGNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ 1597 (1874)
Q Consensus 1521 ~~~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~ 1597 (1874)
|+. . ..|... ......+++.=.. ..+..+ +.| ++...|..++.+..+.|+++.|...+.++..
T Consensus 234 p~~----~-------~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 234 PNH----A-------VVHGNLACVYYEQGLIDLAID--TYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp TTC----H-------HHHHHHHHHHHHTTCHHHHHH--HHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCC----H-------HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 0 011110 0001112211111 111111 223 3467889999999999999999999998887
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000196 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1874)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1874)
..|. .+......+.++...|+ ..+|+..+++.+... + -.+..+..
T Consensus 300 ~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p-------------------~~~~~~~~ 344 (388)
T 1w3b_A 300 LCPT----------HADSLNNLANIKREQGN---IEEAVRLYRKALEVF---P-------------------EFAAAHSN 344 (388)
T ss_dssp HCTT----------CHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSC---T-------------------TCHHHHHH
T ss_pred hCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---C-------------------CcHHHHHH
Confidence 6542 35666677777777784 678988888754311 0 01223444
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1678 ~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+|.-.... ...++....|+++++.+|+...+|..+|...
T Consensus 345 l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 345 LASVLQQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHTT------TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 44443332 2357888999999999999999999888754
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0044 Score=76.56 Aligned_cols=221 Identities=9% Similarity=-0.012 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHH
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDA 198 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~ 198 (1874)
+..+.+.|+++|..|+.... .....+ ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 36789999999999987421 122222 2347888888864 4456788899999999875211111122 246777
Q ss_pred HHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---
Q 000196 199 IWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR--- 269 (1874)
Q Consensus 199 i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~---~~~~~al~~l~~ll~--- 269 (1874)
++..| +..++.+++.|+.||..+...- ...+.... ...++.+..-|...++. +++..|+.+|..|..
T Consensus 291 LV~lLl~s~~~~v~~~A~~aL~nLs~~~----~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 291 LMECALEVKKESTLKSVLSALWNLSAHC----TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHC----HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 77764 5678899999999988876421 11222332 34566666666554322 467777777777764
Q ss_pred cchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHH
Q 000196 270 NTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIA 344 (1874)
Q Consensus 270 ~~~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~a 344 (1874)
...+. ...+. ..++.++..+.+++..+++.++.+|..++..+++. ..... ...++.|...|+..+ .|..|..+
T Consensus 367 ~~~~~-~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 367 TNEDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred CCHHH-HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 22222 12221 25667888888999999999999999998655543 22112 457888888887654 36788899
Q ss_pred HHHHHhhc
Q 000196 345 LGEMAGAL 352 (1874)
Q Consensus 345 lg~la~~v 352 (1874)
|.+++..-
T Consensus 445 L~nL~~~~ 452 (458)
T 3nmz_A 445 LRNLMANR 452 (458)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99887654
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00094 Score=74.98 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=122.9
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhhcC---ccchhc-hHHH
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAENAS---TVFNVH-VAEF 195 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~r~aA~~~l~~la~~~p---~~~~~~-l~~i 195 (1874)
.|..-+..|.+.|-..... .++-+-..++.++.|+. -+++.+.=..++.+|..+..... ..|..| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4666666566655554433 23333444556688874 34454555677888877765432 235555 5889
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 000196 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275 (1874)
Q Consensus 196 l~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~ 275 (1874)
+|.++.-++|++..||+++...+..+..+.. ...+++.+..|+.+.+ |++|.+++..++.++...|-.
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKN-ARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999998877655422 3467777888998775 999999999999999855532
Q ss_pred HHHHHHHH---HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 276 MSRYREVA---EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 276 ~~~~~~i~---~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
+ ...+ ..+..++++++..||.+|++++..+-...++.+
T Consensus 202 -~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 -P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp -G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred -c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 2234 667778899999999999999887665555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.069 Score=66.56 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHH------------HHHHHHHHhcCCcchHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVM------------YAYLKYQWSLGEDLKRKE 1634 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~------------~e~~k~lw~~g~~~~~~~ 1634 (1874)
.+...|..++.+..+.|+++.|...+.++.+..|. .+... +..+..+...|+ ..+
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 275 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD----------HKRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 275 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 34688999999999999999999999998876553 12222 223777778884 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1635 Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
|+..++..+.... .+......++..+|...... ...++.+..|+++++.+|+...+
T Consensus 276 A~~~~~~~l~~~p------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 276 ATSKYESVMKTEP------------------SIAEYTVRSKERICHCFSKD------EKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------cchHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988775311 12344566777777776654 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|..+|..+... .-...|+..|-+++.+.
T Consensus 332 ~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIE--------------EMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHh--------------cCHHHHHHHHHHHHHhC
Confidence 99999887541 12347888888888874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0066 Score=81.99 Aligned_cols=301 Identities=14% Similarity=0.140 Sum_probs=172.2
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc
Q 000196 1274 AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK 1353 (1874)
Q Consensus 1274 ~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~ 1353 (1874)
.+|.++-++ .+...+|.++...+.|..|..+.|..- ...+..+. ++..++..|-+.-.......
T Consensus 1041 ~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~IYkKa~----------~~~~A~~V---Lie~i~nldrAiE~Aervn~ 1104 (1630)
T 1xi4_A 1041 MEYINRLDN---YDAPDIANIAISNELFEEAFAIFRKFD----------VNTSAVQV---LIEHIGNLDRAYEFAERCNE 1104 (1630)
T ss_pred HHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHHHHHcC----------CHHHHHHH---HHHHHhhHHHHHHHHHhcCC
Confidence 344444443 456789999999999999987776531 11222233 34477777777766653322
Q ss_pred hhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHH
Q 000196 1354 ELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPM 1432 (1874)
Q Consensus 1354 ~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~ 1432 (1874)
..-.-..+..+++.|+|++|..+|++. .+ .+.......|+.++|+|+++..+.+.--... ++. +-..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~----Idt~ 1172 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----VETE 1172 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc----ccHH
Confidence 111223345589999999999999764 23 3456779999999999999887765321111 111 1123
Q ss_pred HHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHH
Q 000196 1433 AANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELE 1512 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~Ele 1512 (1874)
.+.+..++++++.++.|++... ...+..+|..+.+ .+.+..|...-.+. ..|.+.-..+++ +.|++
T Consensus 1173 LafaYAKl~rleele~fI~~~n---~ad~~~iGd~le~-----eg~YeeA~~~Y~kA---~ny~rLA~tLvk---Lge~q 1238 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVH---LGEYQ 1238 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhh---hHHHHHHHHHHH---hCCHH
Confidence 5667888899999999875322 1222223322211 12333333322221 234443334333 46788
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000196 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1874)
Q Consensus 1513 Eii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L 1592 (1874)
++++....... .++|.+--..|-+.-+.-.-......++ .+.+..-..++.-.+.|+++.|.+.+
T Consensus 1239 ~AIEaarKA~n-----------~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1239 AAVDGARKANS-----------TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88875532211 2677654333321111111111111122 23444457777889999999999999
Q ss_pred HHHhcCCCCCCc-----ccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1593 VKLLQYDPETSH-----ENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1593 ~~l~~~~~~~~~-----~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+++++.-.. ..+...-.|.-.+|++|+.|.+++..+
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 988877643100 011123468888999999999987543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.078 Score=66.05 Aligned_cols=325 Identities=12% Similarity=0.042 Sum_probs=184.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.++....+++.|..|+.+++...... ++.....-.+..+|..+|+.+.+.-.+..+... . ........|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 56777888899999998888766432 334567778899999999999998888754321 1 111234458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhH------------hhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEAT------------LGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMA 1430 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~------------~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~ 1430 (1874)
.+.|++++|+..|++.+...++.....+.. ...-.++...|+|+.-....+.... +... ...
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----ELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHH
Confidence 899999999999998876543321000111 1224456777777665555443211 1111 112
Q ss_pred HHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHH-HhHhhh
Q 000196 1431 PMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMV-RVQQLS 1509 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~-~lq~L~ 1509 (1874)
...+.+...+|+|+.-.++....- ...... ..++..+. -.....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~-----~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAAS------------------------------KLKNDN-----TEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHH------------------------------HHHCSC-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH------------------------------HhCCCC-----HHHHHHHHHHHHHcC
Confidence 234456666777766554433221 110000 00000000 000111
Q ss_pred hHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHH
Q 000196 1510 ELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAR 1589 (1874)
Q Consensus 1510 EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~ 1589 (1874)
+.++.+.+ +++=+...+.+...|..+-.++ ....++..+..+.+.|+++.|.
T Consensus 226 ~~~~A~~~--------------------~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 226 DHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp CHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHH--------------------HHHHHHhCCChHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHHH
Confidence 12222111 1111111222333333221111 1345677799999999999999
Q ss_pred HHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchh
Q 000196 1590 STLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVP 1669 (1874)
Q Consensus 1590 ~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1669 (1874)
..+.++....|.. +. .........+..++..|+ ..+|+..++..+.....
T Consensus 278 ~~~~~~l~~~p~~-~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~--------------------- 327 (450)
T 2y4t_A 278 SKYESVMKTEPSI-AE-----YTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEPD--------------------- 327 (450)
T ss_dssp HHHHHHHHHCCSS-HH-----HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHHhcCCcc-hH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcc---------------------
Confidence 9999988765531 00 002345666778888885 68999999887643110
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1670 l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
.+.++..+|.-.... ...++....|+++++++|+...+|..++.....
T Consensus 328 -~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 328 -NVNALKDRAEAYLIE------EMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp -CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 123344444444433 345788999999999999999999998876554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.027 Score=72.19 Aligned_cols=413 Identities=14% Similarity=0.053 Sum_probs=206.5
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESW 1363 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~ 1363 (1874)
..+|....+.+.|.+|+.+++...... ++.......+..+|..+|+.+.+...++.+-.. .+ ....+..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 356888888999999998888776532 344567778888899999988888877754321 11 1123345
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchh-HHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIV-LEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~-~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
|.++|+|++|+..|+ .+...++.... .........+-.+++.++..............+. .......+..++
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~ 175 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS------NTSLASFFGIFD 175 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC------HHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch------HhHHHHHHHhcC
Confidence 788899999999885 55433222110 0011111112222222222211110000000010 111222222222
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCC
Q 000196 1443 WDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPV 1522 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~ 1522 (1874)
-+............ ......+..++..+.... .+.|..+..... +.+.-++++++. .|.
T Consensus 176 ~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~--~A~~~~~~~l~~--~p~ 234 (537)
T 3fp2_A 176 SHLEVSSVNTSSNY----------------DTAYALLSDALQRLYSAT-DEGYLVANDLLT--KSTDMYHSLLSA--NTV 234 (537)
T ss_dssp HHHHHHTSCCCCSS----------------CSSHHHHHHHHHHHHTCS-HHHHHHHHHHHH--HHHHHHHHHHC----CC
T ss_pred hHHHHHHHhhcccc----------------ccHHHHHHHHHHHHHHhh-hhhhHHHHHHHH--HHHHHHHHHHHH--CCC
Confidence 22211111100000 011112333333333221 112221111110 011112222221 111
Q ss_pred CCCchhhHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 000196 1523 GNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP 1600 (1874)
Q Consensus 1523 ~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~ 1600 (1874)
. ......+...|..+ +.....+++.-...+.- .+-..|. ...|...+.+..+.|+++.|...+.++...+|
T Consensus 235 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 235 D----DPLRENAALALCYTGIFHFLKNNLLDAQVLLQE-SINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred c----chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 1 11111122223221 11122333322222211 1112344 78999999999999999999999999887655
Q ss_pred CCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhh
Q 000196 1601 ETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGS 1680 (1874)
Q Consensus 1601 ~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~ 1680 (1874)
. .+.+.+..+.+++..|+ ..+|+..+++.+..... . ..++..+|.
T Consensus 308 ~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~------------------~----~~~~~~la~ 352 (537)
T 3fp2_A 308 E----------YPPTYYHRGQMYFILQD---YKNAKEDFQKAQSLNPE------------------N----VYPYIQLAC 352 (537)
T ss_dssp T----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT------------------C----SHHHHHHHH
T ss_pred C----------CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC------------------C----HHHHHHHHH
Confidence 2 46778888999999995 68999999987653211 0 122334444
Q ss_pred hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccC
Q 000196 1681 WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAK 1760 (1874)
Q Consensus 1681 w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~ 1760 (1874)
..... ...++....|+++.+.+|+...+|..+|..+... .-...|++.|-+++...+...
T Consensus 353 ~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 353 LLYKQ------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--------------GDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHcCCcch
Confidence 44332 2457888999999999999999999998776541 123467788888777654322
Q ss_pred CCcchHHhHHHHHHHHHhc----------CCcHHHHHHHHhcccCCC
Q 000196 1761 GVDDSLQDILRLLTLWFNH----------GATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1761 ~~~~~~q~~~RlLtLwf~~----------g~~~~v~~~~~~~~~~ip 1797 (1874)
.....+.....+-.++... |+..+....+++.+..-|
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 2222222233444555555 666666666666654444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.021 Score=73.36 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++....|. .+.+....+.++...|+ ..+|+..++..+....
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------LPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEE 409 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC
Confidence 3577888999999999999999999998877553 35677788889988885 6899999998765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1874)
...... .........+.++... |+| ++.+..|+++++.+|+...+|..
T Consensus 410 ~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 410 VQEKIH---------VGIGPLIGKATILARQSSQDPTQLDEEKF-------------NAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HCSSCS---------STTHHHHHHHHHHHHHHTC----CCHHHH-------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhH---------HHHHHHHHHHHHHHHHhhccchhhhHhHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 111000 0000012235666666 554 67889999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1718 WALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1718 wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+|..+... + -...|++.|-+++.+.
T Consensus 468 l~~~~~~~-------g-------~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 468 LAQLKLQM-------E-------KIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-------c-------cHHHHHHHHHHHHHhC
Confidence 98876541 1 2347888898888875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.01 Score=70.40 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|..++.+..+.|+++.|...+.++....+..... ......+.+....+..+...|+ ..+|+..+++.+....
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE-VTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIP 267 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-CTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCc
Confidence 46778889999999999999999998887654322110 0011235678888999999995 6899999998775321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. ..-...++.++...|+| ++....|+++.+++|+...+|..+|....
T Consensus 268 ~~---------------~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 268 QN---------------ASTYSAIGYIHSLMGNF-------------ENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TC---------------SHHHHHHHHHHHHHTCH-------------HHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred cc---------------hHHHHHHHHHHHHhccH-------------HHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 10 11123356666655554 67889999999999999999999887643
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0013 Score=73.87 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=137.4
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
+++..|.+|+..|....+..|+.+...++-++.-+.-.+.|+++.|-..+.+.+..++..+.+++.....+-...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56678999999998888877877777777777755555679999999999999999888877655444445567889999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000196 245 QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1874)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1874)
...++++. ..+|.++-.++..+....+ ...+.+.++..+.++|..+|..++..+..+-.-.+..+ ...
T Consensus 138 veKlGd~k-~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~ 205 (266)
T 2of3_A 138 LLKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKS 205 (266)
T ss_dssp HHGGGCSS-HHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGG
T ss_pred HHHhCCCh-HHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----ccc
Confidence 99999885 4667777777766654221 12355667777899999999999988887654222222 223
Q ss_pred H---HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHH
Q 000196 325 M---NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPT 362 (1874)
Q Consensus 325 ~---~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~ 362 (1874)
+ +.+...+.+.+ .|.+|+.|+..+-..+|+.+..|++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 5 66777776544 69999999999999999987776643
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.48 Score=64.10 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=106.0
Q ss_pred hHHHHHHHhCCCCH-HHHHH-HHHHHHhhhcCCcCccchHHHHHHHHHHHHHhh-CCCChHhHHHHHHHHHHHHH-hCcc
Q 000196 600 CLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SSADNKCREESAKLLGCLIR-NCER 675 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~-~~~~~~~r~~a~~~L~~l~~-~~~~ 675 (1874)
+++.++...++++. ++... |..++..++... +.+.....++..+..+.. + .++ .|..++..+..+.- +.--
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~l~~~~~~s-~sW-~R~~~L~~lq~~~f~n~f~ 835 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDYVCSSNVAL-SSN-QTKLQLAFIQHFLSAELLQ 835 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHHSSCTTTTS-CSS-SHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 55555 666677666433 122222222233322222 3 567 88888777766653 3322
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCC-hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhc-----------Ccc
Q 000196 676 LIRPYIAPIHKALVARLLEGTGINAN-NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD-----------GAA 743 (1874)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~-~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d-----------~~~ 743 (1874)
.-..-...|...++..|.|+ . .+|+..+..+|+.+....+. .....+++..+.+.+.. ..+
T Consensus 836 l~~~~~~~i~~~v~~~L~D~-----q~~EVRe~Aa~tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 836 LTEEEKNKILEFVVSNLYNE-----QFVEVRVRAASILSDIVHNWKE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp SCTTHHHHTHHHHTTTTTCS-----SCHHHHHHHHHHHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCc--hhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 22222356777888888875 7 88999999999988765412 01112233333322211 011
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+|..|+.+||.++.+.++.+-|..-.|+++..|.+.+.+ +..++..+=++++.
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlse 963 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISE 963 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence 25788999999999999877653233456666666555544 33477777777766
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.082 Score=67.14 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----------APEVPNFFAEILTDKND---FDKALKQYDLAIELE 402 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----------CSHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhh
Confidence 35678999999999999999999999988776542 35677788888888885 688999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhh---cCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA---LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~---~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.... .....+.++..+|..... . ...++....|+++++.+|+...+|..+|..+.
T Consensus 403 ~~~~----------------~~~~~~~~~~~l~~~~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 403 NKLD----------------GIYVGIAPLVGKATLLTRNPTV------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HTSS----------------SCSSCSHHHHHHHHHHHTSCCT------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hccc----------------hHHHHHHHHHHHHHHHhhhhhc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 2110 000112234444444433 2 24578899999999999999999999887755
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.. + -...|+..|-+++.+.
T Consensus 461 ~~-------g-------~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQ-------E-------DIDEAITLFEESADLA 479 (514)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred Hh-------c-------CHHHHHHHHHHHHHhc
Confidence 31 1 2346888888888875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00096 Score=77.68 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=121.2
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcc--h---hHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 75 SGLLESNDAAENLGALRAIDELIDVALGEN--A---SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~li~~~~~~~--~---~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
.+-+.|++|..|..|+..+..++....... . ....++...+...+. +.+..|...|.+++..++...|...
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~--- 90 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSS--- 90 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC------
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhh---
Confidence 355789999999999999888875421110 0 001112223334432 2344555555555555444311100
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH-hhcCCchhHHHHHHHHHHHHHHHHhhc
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV-ALRDPTLAVRERAVEALRACLRVIEKR 228 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~-~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1874)
+....+..++..++|.++. ++.|+++.+|..|.+++-.++....
T Consensus 91 ---------------------------------~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-- 135 (278)
T 4ffb_C 91 ---------------------------------LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-- 135 (278)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--
T ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--
Confidence 0011234566778887775 6899999999999988876654321
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh-h--hHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE-F--MMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~-~--~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
....+++.+..++...+ +.++.+++.+|..++...|. . ..+.+..++..+...++++++.||.++..++
T Consensus 136 -------~~~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 136 -------SITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp -------SSHHHHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11345677777887764 78899999999999885432 1 3345667777888889999999999999999
Q ss_pred HhHhhhChh
Q 000196 306 PRIAHFLRD 314 (1874)
Q Consensus 306 ~~la~~~~~ 314 (1874)
..+-.+.++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 988766553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.16 Score=60.49 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH------------HHHHHHHHHhcCCcchHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV------------MYAYLKYQWSLGEDLKRKE 1634 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v------------~~e~~k~lw~~g~~~~~~~ 1634 (1874)
++...|...+.+..+.|+++.|...+.++....|.. +.. .+..+..+...|+ ..+
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~ 252 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 252 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 457899999999999999999999999988775531 221 1233566777774 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1635 Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
|+..++..+.... .+.....+.+..+|...... ...++.+..|.++++.+|+...+
T Consensus 253 A~~~~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 253 ATSKYESVMKTEP------------------SVAEYTVRSKERICHCFSKD------EKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765321 12334556666667666554 35788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|+..|..+... .-...|+..|-+++.+.
T Consensus 309 ~~~~~~~~~~~--------------g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 309 LKDRAEAYLIE--------------EMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcC
Confidence 99999876541 12347888999988875
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0071 Score=72.33 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=144.8
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcc-hHHHH-HHHHHH
Q 000196 83 AAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMA 157 (1874)
Q Consensus 83 ~~~r~~~i~ai~~li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~-~~~v~-~~~~~~ 157 (1874)
...|..|..+|..|.... .+....+ .-+.+.|..++. +++.++...|+++|+.|+...+... ..+++ .-++.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 445777888888886442 1122223 123667777775 5689999999999999986311111 12222 246666
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHhhcchh
Q 000196 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 158 ~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~--l~~il~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
++.|....+...+..|+.+|..|+.+++..=... ....+|.++..|+++++ .|++.|+.+|+.+...+...+ .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~ 254 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-D 254 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH-H
Confidence 6665433445567778888889987554321111 24678888888887665 489999999998765433111 1
Q ss_pred hHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000196 232 WRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1874)
Q Consensus 232 ~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~l 308 (1874)
.+.... ...++.+..-|.+.+ .+++..|+.+|..+.....+.. ..+. ..++.++.+++++++.+|+.++.+|..|
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 222221 235677777777654 5778888888888764322221 1121 2466777778889999999999999999
Q ss_pred hhhChhh
Q 000196 309 AHFLRDR 315 (1874)
Q Consensus 309 a~~~~~~ 315 (1874)
+...+..
T Consensus 333 ~~~~~~~ 339 (354)
T 3nmw_A 333 MANRPAK 339 (354)
T ss_dssp HTTCCGG
T ss_pred HcCCHHH
Confidence 9877754
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0066 Score=72.63 Aligned_cols=223 Identities=10% Similarity=-0.017 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchHHH--HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHH
Q 000196 125 REILVLASKVLGHLARAGGAMTADEV--EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIW 200 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~~g~~~~~~v--~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~ 200 (1874)
.++.+.|+++|..|+.........+. ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 67899999999999864211122221 2348888888864 4456788899999999876221111122 24577777
Q ss_pred Hhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---cc
Q 000196 201 VAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR---NT 271 (1874)
Q Consensus 201 ~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~---~~~~~al~~l~~ll~---~~ 271 (1874)
..| +.+++.+++.|+.||..+... ....+.... ...++.+..-+...++. +++..|+.+|..|.. ..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~----~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAH----CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcc----ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 764 567889999999998876541 111223332 34666666666554322 467777777777764 22
Q ss_pred hhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHH
Q 000196 272 GEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALG 346 (1874)
Q Consensus 272 ~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg 346 (1874)
.+. ...+. ..++.++..+.+++..+++.++.+|..++..+++. ..... ...++.|...|+..+ .|..|..+|.
T Consensus 253 ~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 253 EDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp HHH-HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHH-HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 221 12221 25677888888999999999999999998655432 11112 356888888887654 3678999999
Q ss_pred HHHhhchh
Q 000196 347 EMAGALDG 354 (1874)
Q Consensus 347 ~la~~v~~ 354 (1874)
+++..-+.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 98876554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.063 Score=63.38 Aligned_cols=267 Identities=14% Similarity=0.048 Sum_probs=160.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHHHHHHHHHHHc
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMAPMAANAAWNM 1440 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~~~~a~aaw~l 1440 (1874)
.+-..|+|++|+..|++.+...++. ......+..|+..+|+|+......+.... +.+.. .....+.+.+..
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 103 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV----SWFAVGCYYLMV 103 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHh
Confidence 3556699999999999988765443 23456688999999999887766654321 11111 223445677788
Q ss_pred C-ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000196 1441 G-EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1874)
Q Consensus 1441 ~-~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~ 1519 (1874)
| +|+.-.++....-... ... ...+..+-.+ .....+.++.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~---------------~~~-~~~~~~l~~~------------------~~~~~~~~~A~~~-- 147 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE---------------KTY-GPAWIAYGHS------------------FAVESEHDQAMAA-- 147 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC---------------TTC-THHHHHHHHH------------------HHHHTCHHHHHHH--
T ss_pred hhhHHHHHHHHHHHHHhC---------------Ccc-HHHHHHHHHH------------------HHHccCHHHHHHH--
Confidence 8 8886655544321100 000 1111111000 0011112222211
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 000196 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYD 1599 (1874)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~ 1599 (1874)
+++=+.. .| ++...|...+.+..+.|+++.|...+.++....
T Consensus 148 ------------------~~~a~~~-------------------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 148 ------------------YFTAAQL-------------------MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp ------------------HHHHHHH-------------------TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------------------HHHHHHh-------------------cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 1100000 01 134567778899999999999999999998876
Q ss_pred CCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHh
Q 000196 1600 PETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLG 1679 (1874)
Q Consensus 1600 ~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g 1679 (1874)
|. .+.+....+.++...|+ ..+|+..++..+......... ......+.++..+|
T Consensus 190 ~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~la 243 (330)
T 3hym_B 190 PE----------DPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNE-------------VTVDKWEPLLNNLG 243 (330)
T ss_dssp TT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCS-------------CTTTTCCHHHHHHH
T ss_pred CC----------ChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccc-------------ccccHHHHHHHHHH
Confidence 53 46778888899999995 689999999877654321110 00011123344445
Q ss_pred hhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1680 SWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1680 ~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...... ...++....|+++.+.+|+...+|..+|..+...= -...|++.|-+++.+.
T Consensus 244 ~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 244 HVCRKL------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------------NFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHT------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------------CHHHHHHHHHTTTTTC
T ss_pred HHHHHh------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------------cHHHHHHHHHHHHccC
Confidence 444433 24578899999999999999999999998766421 2346788888887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.047 Score=69.42 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh---cCCcchHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS---LGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~---~g~~~~~~~Al~~l~~~~ 1643 (1874)
.+...|...+.+..+.|+++.|...+.++....+.... ......+.+..+..+.. .| +..+|+..++..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~---~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----IYVGIAPLVGKATLLTRNPTVE---NFIEATNLLEKAS 442 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS----CSSCSHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch----HHHHHHHHHHHHHHHhhhhhcC---CHHHHHHHHHHHH
Confidence 34678999999999999999999999988765442110 00113467778888888 77 4789999998876
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
...... ......++++|...|+ .++....|+++.+++|+...+|.......
T Consensus 443 ~~~~~~---------------~~~~~~la~~~~~~g~-------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 443 KLDPRS---------------EQAKIGLAQMKLQQED-------------IDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHCTTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HhCccc---------------HHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 531100 0011234444444443 57788999999999999999988765443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=77.35 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc-----chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc--hhhHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTV-----FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQ 235 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~-----~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~ 235 (1874)
.+++|..|.+|+.-+..+....+.. ....+..+.+.+-..+.|++..|...|++++..++....... ......
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 5789999999999998887765432 223344556666678899999999999999988765432111 112234
Q ss_pred HHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh-hCh
Q 000196 236 WYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH-FLR 313 (1874)
Q Consensus 236 ~~~~i~~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~-~~~ 313 (1874)
+...+++.+... ++++. ..++..++.++-.+++.... ...+.+.++..+.++++.+|..++..+..+.. |..
T Consensus 99 ~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 566777877764 77764 45667777777666653221 12345667777899999999999888887543 333
Q ss_pred hhH-HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhh
Q 000196 314 DRF-VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGEL 356 (1874)
Q Consensus 314 ~~f-~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~ 356 (1874)
... ....++.+++.+...|.+.+ .|..|..+++.+-..+|..+
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 221 22356777888888887543 69999999999999998643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.014 Score=62.14 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000196 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
+.+.+.-++.-|.++++..+ +|-..|.+.+ ++++...-...+..+.+.|.++++++|-....-|+-+++.|++.-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~Leell----K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEIL----KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHH----HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 45567777777777655444 3555555555 444333333344455666667888877766777888888887653
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000196 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1874)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~l 180 (1874)
. -..+...+..+.+..++. .++.-....|++.+|.+ . .....+..+...++.+ ..++...+.||+.++.++
T Consensus 107 p-L~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 P-MGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp C-BCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHh
Confidence 1 134556778889999986 67888999999999998 2 2222334455555555 567777889999999999
Q ss_pred HhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 181 a~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
+..+.+ ...+..|+..|-..|+.+++.+++-|..++..++
T Consensus 178 a~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 178 LNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred hcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 987543 1345566777777888889999999998876554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.11 E-value=1.9 Score=58.88 Aligned_cols=381 Identities=15% Similarity=0.105 Sum_probs=205.1
Q ss_pred HHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHH
Q 000196 1329 EALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWE 1408 (1874)
Q Consensus 1329 e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~ 1408 (1874)
+.+..|+.++|+.+.|.-+.+..... ..-...++|++|+|++|.+.+++. +. .+....+=+++.+.|+|+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~--~~A~~VLie~i~nldrAiE~Aerv-----n~---p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVN--TSAVQVLIEHIGNLDRAYEFAERC-----NE---PAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCH--HHHHHHHHHHHhhHHHHHHHHHhc-----CC---HHHHHHHHHHHHhCCCHH
Confidence 44677888888888888888865432 111233578888899998888753 11 233446667888888886
Q ss_pred HHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHh
Q 000196 1409 ELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488 (1874)
Q Consensus 1409 ~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~ 1488 (1874)
+-.+....- .+++.-. -.+.++-++|+|+..-+|+......... ...+..
T Consensus 1123 EAIdsYiKA---dD~say~----eVa~~~~~lGkyEEAIeyL~mArk~~~e-------------~~Idt~---------- 1172 (1630)
T 1xi4_A 1123 EAIDSYIKA---DDPSSYM----EVVQAANTSGNWEELVKYLQMARKKARE-------------SYVETE---------- 1172 (1630)
T ss_pred HHHHHHHhc---CChHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhccc-------------ccccHH----------
Confidence 555443321 1221111 1366788888888887777543210000 000000
Q ss_pred cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCccc
Q 000196 1489 GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTED 1568 (1874)
Q Consensus 1489 ~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~ 1568 (1874)
... +| -++.++.|++++++ .++ ...+. .|-+++.....--+.- .. + ..
T Consensus 1173 --Laf----aY---AKl~rleele~fI~---~~n--------~ad~~-~iGd~le~eg~YeeA~-~~-------Y---~k 1220 (1630)
T 1xi4_A 1173 --LIF----AL---AKTNRLAELEEFIN---GPN--------NAHIQ-QVGDRCYDEKMYDAAK-LL-------Y---NN 1220 (1630)
T ss_pred --HHH----HH---HhhcCHHHHHHHHh---CCC--------HHHHH-HHHHHHHhcCCHHHHH-HH-------H---Hh
Confidence 000 11 12345666776652 211 11232 3666665433211110 00 0 11
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|.+.++..-|.|+++.|..+-.++.. +..-.+.+-..-..|+ -..|......++.
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n---------------~~aWkev~~acve~~E---f~LA~~cgl~Iiv---- 1278 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANS---------------TRTWKEVCFACVDGKE---FRLAQMCGLHIVV---- 1278 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhhH---HHHHHHHHHhhhc----
Confidence 46999999999999999999998776521 2221222222223332 3344443322211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
.+..+-.+++|.... ...++.+..|+.++.+++.+.-.|..+|....+
T Consensus 1279 ----------------------~~deLeeli~yYe~~------G~feEAI~LlE~aL~LeraH~gmftELaiLyaK---- 1326 (1630)
T 1xi4_A 1279 ----------------------HADELEELINYYQDR------GYFEELITMLEAALGLERAHMGMFTELAILYSK---- 1326 (1630)
T ss_pred ----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh----
Confidence 122233344444332 346889999999999999888888887766543
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc-CCChhhHHHHHHH
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA-HVNINTWLVVLPQ 1807 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~-~ip~~~wl~~ipQ 1807 (1874)
| ..+-+..+++.|-..+...+--.-+ ...+--..+..|...+|+......+|.++.. .-....|-.
T Consensus 1327 y--------~peklmEhlk~f~~rini~k~~r~~-e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~---- 1393 (1630)
T 1xi4_A 1327 F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD---- 1393 (1630)
T ss_pred C--------CHHHHHHHHHHHHHhcccchHhHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH----
Confidence 2 1234556677787666532100000 2344567788888888876655545544421 111223333
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHH
Q 000196 1808 IIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLR 1853 (1874)
Q Consensus 1808 Liari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R 1853 (1874)
.+.... + -.+....+.=....||..+-+-|.++..--+..|
T Consensus 1394 ~i~kv~--n---~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R 1434 (1630)
T 1xi4_A 1394 IITKVA--N---VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 1434 (1630)
T ss_pred Hhcccc--c---HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHH
Confidence 222222 2 2445555555558999998887777754333333
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0069 Score=72.22 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=141.2
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..-+.++.+++|.-||.+++.++.....+. ++.. ..+.|--+|...+-+|.
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~~---------------------~~N~DLAvRLLCVLALD 230 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQI---------------------RVDSKLFSKIYEILVTD 230 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CCC---------------------CCCTTHHHHHHHHHHHB
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------ceec---------------------cccHHHHHHHHHHHHhc
Confidence 3344667899999999999999987543221 1110 01113334444445553
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+|..|.+ |. ...||++|.++||.+ .+.|.. .. ++.+++..+ .. ..++.|.-++-.
T Consensus 231 ---RFGDYVS-------------DqVVAPVRETaAQtLGaL-~hLp~e-~~----IL~qLV~~l-~~-~~WEVRHGGLLG 286 (800)
T 3oc3_A 231 ---KFNDFVD-------------DRTVAPVRDAAAYLLSRI-YPLIGP-ND----IIEQLVGFL-DS-GDWQVQFSGLIA 286 (800)
T ss_dssp ---CCBBCSS-------------SSCBCHHHHHHHHHHHHH-TTTSCS-CC----HHHHHTTGG-GC-SCHHHHHHHHHH
T ss_pred ---ccccccc-------------CeeeeehHHHHHHHHHHH-HhCChh-HH----HHHHHHhhc-CC-CCeeehhhhHHH
Confidence 6666553 43 467999999999999 777765 23 333344333 33 467877766655
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|--+ .+.+.. ++.+++.++..+.|. +.+|+..++.++-.++ ....++.++..+-+.|.+.++..
T Consensus 287 LKYL----~DLL~~-Ld~Vv~aVL~GL~D~-----DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 287 LGYL----KEFVED-KDGLCRKLVSLLSSP-----DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHT----GGGCCC-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCC
T ss_pred HHHH----HHHHHH-HHHHHHHHHhhcCCc-----ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccc
Confidence 5544 444444 889999999999985 7789888777765555 23457788888888887543222
Q ss_pred -hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 746 -KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 746 -~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
.......-|+.++...... ...|++++.|..++++. -..||.++++++-.
T Consensus 351 ASTgSVMdLLAkL~s~p~~a----~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t 401 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPEL----SIPPERLKDIFPCFTSP-VPEVRTSILNMVKN 401 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTC----CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHcCCccc----ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence 2233455667777665321 12368888999999766 57999999998644
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.038 Score=58.98 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=124.1
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
...+.++++..|...|..++.+++.++....+. ....+.++.+-+-.++. ..|..|.-.|.+|++.|... .....+-
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~-vpL~~~~ 112 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKD-VPMGSKT 112 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTT-CCBCHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcC-CCCCHHH
Confidence 445678899999999999999999999875332 23445666666666664 67899999999999999874 3455555
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
+...++.....+. ++++-.+.-|...++-+ .+..+ .+.+.+.|...+..+++.+..+|..++-.+.....+.
T Consensus 113 y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl---kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~- 184 (265)
T 3b2a_A 113 FLKAAKTLVSLLE-SPDDMMRIETIDVLSKL---QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS- 184 (265)
T ss_dssp HHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC---CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC-
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHHHHhCcC---Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH-
Confidence 5555555555444 66667777777777666 33333 4456666667778899999999988877654432211
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.....++.++-.-+... +...+.-|+.++..++.
T Consensus 185 -----~i~~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 185 -----GHLTLILDEIPSLLQND-NEFIVELALDVLEKALS 218 (265)
T ss_dssp -----CCGGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 12333444444445555 56788888888877765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.051 Score=58.07 Aligned_cols=170 Identities=17% Similarity=0.214 Sum_probs=125.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
|....|..++...++.|+++.|...+.++.+.+|+ .+.+.+..+.++...|+ ..+|+..++......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----------NVETLLKLGKTYMDIGL---PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999988763 46778888899999995 678998888765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. .+.++..+|...... ...+.....|.++.+.+|+...+|+.+|..+...
T Consensus 70 ~~----------------------~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~- 120 (184)
T 3vtx_A 70 TT----------------------SAEAYYILGSANFMI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM- 120 (184)
T ss_dssp CC----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ch----------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-
Confidence 11 123344555554443 3467888999999999999999999998776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|++.|-+++... .........+=.+++..|..++....+++.+..=|
T Consensus 121 -------------g~~~~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 121 -------------GEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred -------------CCchhHHHHHHHHHHhc------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 12347899999999875 23345566677778888888877777777665433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.28 Score=58.85 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALELQP 282 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 5788899999999999999999999998876542 36677888889989995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----------hHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----------GKAWH 1716 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----------~k~w~ 1716 (1874)
.. ..-...++.+|...|+ .++....|+++++++|+. ..+|.
T Consensus 283 ~~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 283 GY---------------IRSRYNLGISCINLGA-------------HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp TC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred Cc---------------HHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 00 0111234555555554 467889999999999987 78999
Q ss_pred HHHHHHHHH
Q 000196 1717 SWALFNTAV 1725 (1874)
Q Consensus 1717 ~wA~~n~~~ 1725 (1874)
.+|..+...
T Consensus 335 ~l~~~~~~~ 343 (368)
T 1fch_A 335 TLRLALSML 343 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988876653
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=66.97 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+...++++++.+|..|+.+++.+-. .. + +.|+. .+.|+++.||..++.+|
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~~-----------------------~~-~----~~L~~-~L~d~~~~vR~~A~~aL 66 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMGD-----------------------EA-F----EPLLE-SLSNEDWRIRGAAAWII 66 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCSS-----------------------TT-H----HHHHH-GGGCSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCc-----------------------hH-H----HHHHH-HHcCCCHHHHHHHHHHH
Confidence 44566778888888776644432210 01 1 22332 46789999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+. + ..++.++.|..+++|+++.||..|+..|+++.. + ..+..++..+ .+ .++..|..|+..
T Consensus 67 ~~---~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~---~a~~~L~~~l-~d-~~~~vr~~A~~a 127 (131)
T 1te4_A 67 GN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------E---RVRAAMEKLA-ET-GTGFARKVAVNY 127 (131)
T ss_dssp GG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------H---HHHHHHHHHT-TS-CCTHHHHHHHHH
T ss_pred Hh---c----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------H---HHHHHHHHHH-hC-CCHHHHHHHHHH
Confidence 62 1 124567788888889999999999999998763 1 1111222223 33 567788888877
Q ss_pred HHH
Q 000196 666 LGC 668 (1874)
Q Consensus 666 L~~ 668 (1874)
|+.
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.32 Score=54.67 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCH
Confidence 4678899999999999999999999998877553 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWAL 1720 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~ 1720 (1874)
. .+.++..+|...... ...++....|+++.+++ |+...+|..++.
T Consensus 205 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 N----------------------FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred H----------------------HHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 0 133455555555443 34678889999999999 777777766553
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.001 Score=67.43 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=25.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1874)
.+.|+++.+|..++.+|+. +.. + .++.|..+++|+++.||..|+..|+++.
T Consensus 20 ~L~~~~~~vR~~A~~~L~~---~~~----~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 20 HMADENKWVRRDVSTALSR---MGD----E-AFEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp -CCSSCCCSSSSCCSSTTS---CSS----T-THHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred HhcCCCHHHHHHHHHHHHH---hCc----h-HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 3455555555555555531 111 1 1355555555555556655555555543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.49 Score=59.25 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=160.4
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhh
Q 000196 10 YIGPPAPGAGGGSLDALNRILADLCTHG--NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAE 85 (1874)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~L~s~~--~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~ 85 (1874)
+.|++.+|+++.+.+.+.++.+.|.+.. +++|.|..+|+.+- |+...+-...-++.|.+ .++. .|.+.
T Consensus 7 ~~g~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s----k~y~~~Vg~~~l~~li~----~L~~d~~D~e~ 78 (651)
T 3grl_A 7 VMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLS----KKYRLEVGIQAMEHLIH----VLQTDRSDSEI 78 (651)
T ss_dssp -----------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT----TTTTTHHHHHTHHHHHH----HHHSCTTCHHH
T ss_pred hhCCCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHH----HHhHHHhhhhhHHHHHH----HHhcccccHHH
Confidence 4667777888999999999999998775 45666887777763 44333322222222222 2221 34433
Q ss_pred hhhHHHHHhHhhccccCcch---------hHHH----------HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcc
Q 000196 86 NLGALRAIDELIDVALGENA---------SKVS----------KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT 146 (1874)
Q Consensus 86 r~~~i~ai~~li~~~~~~~~---------~~~~----------~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~ 146 (1874)
=.+.+-.+-.++.....+.. ..-- .....|..++. ..|..++-.+.+.|..|+...+...
T Consensus 79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~ 157 (651)
T 3grl_A 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQV 157 (651)
T ss_dssp HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHH
Confidence 34344444333322211000 0001 12235566665 5789999999999999998744322
Q ss_pred hH-HHH--HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc--chhchHHHHHHHHHhhcCCch----hHHHHHHHH
Q 000196 147 AD-EVE--FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV--FNVHVAEFVDAIWVALRDPTL----AVRERAVEA 217 (1874)
Q Consensus 147 ~~-~v~--~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~--~~~~l~~il~~i~~~l~D~~~----~VR~aA~~a 217 (1874)
.+ ++. .-+++++..|. ++++..|-.|+.+|.+|+.+.+.. +. -+...|+.++.-+++... .|-+.+...
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIV-AFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 22 221 35677777775 456889999999999999987752 11 122335555555544333 232222332
Q ss_pred HHHHHHHHhhcchhhHHHHHH-HHHHHHHhhccCCC---Chh-----HHHHHHHHHHHHHHcchhh--hHHHHHH-----
Q 000196 218 LRACLRVIEKRETRWRVQWYY-RMFEATQDGLGRNA---PVH-----SIHGSLLAVGELLRNTGEF--MMSRYRE----- 281 (1874)
Q Consensus 218 l~~~~~~i~~r~~~~~~~~~~-~i~~~~~~~l~~~~---~~~-----~~~~al~~l~~ll~~~~~~--~~~~~~~----- 281 (1874)
+..++ . ..+..+..+.. .+.+.+..-+.... .|. ...+++.+++-|+...+.. ...+-..
T Consensus 236 l~nLL---r-~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 236 LQNLL---K-NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHH---T-TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHH---h-cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 33222 1 11112222221 13333333333221 122 2345555666665533221 1111111
Q ss_pred HHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhCh---hhHHHHH------HHHHHHHHHHhhcCC---CCcchHHHHHHH
Q 000196 282 VAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLR---DRFVTNY------LKICMNHILTVLRIP---AERDSGFIALGE 347 (1874)
Q Consensus 282 i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~---~~f~~~y------l~~~~~~Ll~~L~~~---~~R~~a~~alg~ 347 (1874)
++..+++..-.. ...|+..++.+++.+..-++ +.|.+.- .+.++..|+..+.+. ..|.+|+.|+..
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344555555443 56789999999998876554 2333210 022333344444321 247788877776
Q ss_pred HH
Q 000196 348 MA 349 (1874)
Q Consensus 348 la 349 (1874)
..
T Consensus 392 y~ 393 (651)
T 3grl_A 392 FL 393 (651)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.13 Score=56.85 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=122.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+..-.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------DPEALYWLARTQLKLGL---VNPALENGKTLVARTP 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999887663 47788888999999995 6899999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH-----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL-----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~-----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1874)
. ...-...++.++... |++ ++.+..|++|++++|++..+|.
T Consensus 71 ~---------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 71 R---------------YLGGYMVLSEAYVALYRQAEDRERGKGYL-------------EQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHH-------------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHhhhhhhhhcccccCH-------------HHHHHHHHHHHHhCcccHHHHH
Confidence 0 011123456666666 544 6788999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000196 1717 SWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1874)
Q Consensus 1717 ~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1874)
.+|...... + -...|+..|-+++.+. ........+-.+++..|..++....+++.+..-
T Consensus 123 ~lg~~~~~~-------g-------~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 123 QRGLVYALL-------G-------ERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHT-------T-------CHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHc-------C-------ChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998775531 1 2347899999998873 223344556666777788777766666665543
Q ss_pred C
Q 000196 1797 N 1797 (1874)
Q Consensus 1797 p 1797 (1874)
|
T Consensus 182 P 182 (217)
T 2pl2_A 182 P 182 (217)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.05 Score=71.75 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.+.|..++.+.++.|+++.|...+.++.+.+|+ .+...+..+..+..+|+ ..+|+..+++.++-
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~l- 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAHSNLASVLQQQGK---LQEALMHYKEAIRI- 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-
Confidence 34788999999999999999999999999988763 46777888889999995 68999999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. -.+.++..+|.-..++ ...++.++.|++|++++|++..+|+.+|....+.
T Consensus 73 ~P---------------------~~~~a~~nLg~~l~~~------g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~- 124 (723)
T 4gyw_A 73 SP---------------------TFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIHKDS- 124 (723)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CC---------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 11 1244566666665554 3468899999999999999999999999775541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHH
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQ 1790 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~ 1790 (1874)
.-...|++.|-+++.+. .........+-.+....|+..+..+.++
T Consensus 125 -------------g~~~eAi~~~~~Al~l~------P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 125 -------------GNIPEAIASYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhC------CCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 12347899999999985 2334556666777777777665444433
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.13 Score=60.64 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcc
Q 000196 42 GASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120 (1874)
Q Consensus 42 ~aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~ 120 (1874)
+....+.+++--.. .++.|.+ ....+.-.+.+++.++|...|+-+-+++..+.... .+.- . ..|.+.+=+.
T Consensus 43 kc~~~l~kll~l~~---~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i-L---v~Nsl~kDl~ 114 (355)
T 3tjz_B 43 KCAHILTKILYLIN---QGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI-I---VTSSLTKDMT 114 (355)
T ss_dssp HHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG-G---GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH-H---HHHHHHhhcC
Confidence 34445777764443 3344532 33455666778999999999998999998887663 2211 2 2344444443
Q ss_pred cCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHH
Q 000196 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIW 200 (1874)
Q Consensus 121 ~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~ 200 (1874)
..++-++..|-++++++... ...+.+...++.++ .+++...|.+|+.+..-+....|+.+. .+++.+-
T Consensus 115 -~~N~~iR~lALRtL~~I~~~---~m~~~l~~~lk~~L----~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~ 182 (355)
T 3tjz_B 115 -GKEDSYRGPAVRALCQITDS---TMLQAIERYMKQAI----VDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQ 182 (355)
T ss_dssp -SSCHHHHHHHHHHHHHHCCT---TTHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHH
T ss_pred -CCcHhHHHHHHHHHhcCCCH---HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Confidence 35688999999999999764 34555555666665 467778888888888888888888765 4566666
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHH
Q 000196 201 VALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY 279 (1874)
Q Consensus 201 ~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~ 279 (1874)
..+.|+++-|...|..++..+. +.+ ...+.++.+.+..+ +.+ +| +-+.+++.+.....+--...-
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~----~~d----~~a~~kLv~~l~~~~l~~--~~----~q~~llr~l~~~~~~d~~~~~ 248 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVR----KND----RLAVSKMISKFTRHGLKS--PF----AYCMMIRVASRQLEDEDGSRD 248 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHSSCCSC--HH----HHHHHHHHHTCC---------
T ss_pred HHhcCCCccHHHHHHHHHHHHH----hhc----hHHHHHHHHHHhcCCCcC--hH----HHHHHHHHHHHhccccchhhH
Confidence 7889999999766655554432 122 12344555544432 222 22 223333332221111000122
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhchhhh
Q 000196 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI--PAERDSGFIALGEMAGALDGEL 356 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~--~~~R~~a~~alg~la~~v~~~~ 356 (1874)
.++++.+...++|.++.|.-.++.+|-.+....... +......+...|.+ +..|-.|+..|..++..-+..+
T Consensus 249 ~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v 322 (355)
T 3tjz_B 249 SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322 (355)
T ss_dssp --------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH
Confidence 346666777778999999988888777665433221 23334444455543 3467888888888776555433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.4 Score=57.57 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|..++.+..+.|+++.|...+.++....|. .+.+....+..+...|+ ..+|+..+++.+....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDR---SEEAVEAYTRALEIQP 278 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 5778999999999999999999999998877553 36677888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------------hHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------------GKAW 1715 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------------~k~w 1715 (1874)
.. ..-...++.+|..+|+| ++....|++|.+++|+. ..+|
T Consensus 279 ~~---------------~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 279 GF---------------IRSRYNLGISCINLGAY-------------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHCC------------CHHH
T ss_pred Cc---------------hHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 00 00112345555555443 67889999999999873 5677
Q ss_pred HHHHHHHH
Q 000196 1716 HSWALFNT 1723 (1874)
Q Consensus 1716 ~~wA~~n~ 1723 (1874)
..++..+.
T Consensus 331 ~~l~~~~~ 338 (365)
T 4eqf_A 331 AALRIALS 338 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.44 Score=54.20 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+..+...++++.|...+.++...+|. .+...+..+......|+.....+|+..+++.+....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 4566777775666667999999999998877653 255666677777777753223568888888765443
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..+. .. ....+.++..+|...... ...++....|+++++++|+...+|..+.....
T Consensus 211 ~~~~-------------~~-~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGA-------------KY-KDELIEANEYIAYYYTIN------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGG-------------GG-HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccc-------------cc-hHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2110 01 344667888888877664 45789999999999999999999988776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.74 Score=53.84 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+......+..+...|+ ..+|+..+++.+....
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNR---PQEALDAYNRALDINP 237 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 4678889999999999999999999998876542 36777888888988885 6899999988765321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc------------chHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK------------WGKAW 1715 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~------------~~k~w 1715 (1874)
. ...++..+|...... ...++....|+++++.+|+ ...+|
T Consensus 238 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 238 G----------------------YVRVMYNMAVSYSNM------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred C----------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 0 112333344443332 2357788999999999998 78888
Q ss_pred HHHHHHHHH
Q 000196 1716 HSWALFNTA 1724 (1874)
Q Consensus 1716 ~~wA~~n~~ 1724 (1874)
..+|.....
T Consensus 290 ~~l~~~~~~ 298 (327)
T 3cv0_A 290 DFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.14 Score=55.42 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh-hCCCcch
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLAR-AGGAMTA 147 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~-~~g~~~~ 147 (1874)
++......|.+++....|..|+.+|..+ . . .....+.++..++....=.|++.++.+++.++. .+...
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 4555666788888888999999988877 3 1 134667777756544456999999999999986 43222
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
.++...+|..++..+.||.|+. .++--+.. | .+......+++.|-....|++..||.+-+++|+.+.
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase-~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATE-GLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHH-HTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHH-hhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2566778998777766665543 33222221 3 345666778888888888999999999999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.12 Score=62.56 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=5.8
Q ss_pred HhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHH
Q 000196 1296 EKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALK 1375 (1874)
Q Consensus 1296 ~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~ 1375 (1874)
.+++...+|.-|.|.. +.+..+-.|.+.|.+.|+.+.|.=.+..............-++.+|+|++|..
T Consensus 14 ~~~~~ld~A~~fae~~-----------~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4666677777776654 11245566666666666666554433322211122222234677788888888
Q ss_pred HHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHH
Q 000196 1376 AYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLC 1414 (1874)
Q Consensus 1376 ~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~ 1414 (1874)
+|+......+++ ......+.|+.++|+|+.+.++.
T Consensus 83 yl~~ark~~~~~----~i~~~Li~~Y~Klg~l~e~e~f~ 117 (449)
T 1b89_A 83 YLQMARKKARES----YVETELIFALAKTNRLAELEEFI 117 (449)
T ss_dssp ------------------------------CHHHHTTTT
T ss_pred HHHHHHHhCccc----hhHHHHHHHHHHhCCHHHHHHHH
Confidence 666554321111 12345667777778877766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=1.8 Score=52.26 Aligned_cols=128 Identities=11% Similarity=-0.018 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+....|+ ..+|+..++..+.....
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc----hHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999998877543221100 0113456677788888885 68899999886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|...... ...++....|++|.++.+.. ..++..+|..+
T Consensus 300 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 300 ----------------LNDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 112334566667777766554 34688899999998885543 45666666665
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
...
T Consensus 358 ~~~ 360 (406)
T 3sf4_A 358 MVL 360 (406)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.82 Score=53.42 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=141.3
Q ss_pred ccHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1567 EDVETWLKFASLCRK-------SGRI-------SQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk-------~g~~-------~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+.|+.++.+..+ .|++ +.|...+.++.. .+|. .+.+-+.++.++...|+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----------~~~~~~~~~~~~~~~~~--- 114 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 114 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 457888888888764 4776 889999999887 5542 35677889999999985
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|...+++.+.. . + .+.. .++..+|.+..+. ...++....|.+|++.+|..
T Consensus 115 ~~~A~~~~~~al~~-~--p---------------~~~~---~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 115 YEKVHSIYNRLLAI-E--D---------------IDPT---LVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHHTS-S--S---------------SCTH---HHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhc-c--c---------------cCcc---HHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCC
Confidence 67899888886641 1 0 0111 1567777777654 35788999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
...|..+|...... . .-...|++.|-+++...+ ........+..+....|+.++....+++
T Consensus 168 ~~~~~~~a~~~~~~------~-------~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 168 HHVYVTAALMEYYC------S-------KDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp THHHHHHHHHHHHT------S-------CCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------c-------CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888777654321 0 123467888888888752 2345567777777888998888888888
Q ss_pred cccC--CChh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000196 1792 GFAH--VNIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1874)
Q Consensus 1792 ~~~~--ip~~----~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPq 1836 (1874)
.+.. +|+. .|..++ ++..+.+.. .-...++.+..+.+|.
T Consensus 229 al~~~~l~p~~~~~l~~~~~-~~~~~~g~~-----~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFL-AFESNIGDL-----ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHH-HHHHHHSCH-----HHHHHHHHHHHHHTTT
T ss_pred HHhccCCCHHHHHHHHHHHH-HHHHHcCCH-----HHHHHHHHHHHHHccc
Confidence 8874 5653 565554 333444432 2234667777788886
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.034 Score=65.61 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=105.1
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+.+-+.|+++.+|-.|..++|++.... ++..+ ...+..++.|.++.||.+++-+.
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~~~-----------------------m~~~l-~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITDST-----------------------MLQAI-ERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCTT-----------------------THHHH-HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCCHH-----------------------HHHHH-HHHHHHHcCCCCHHHHHHHHHHH
Confidence 3344567889999999999999986432 12322 23455678999999999887665
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
..--..++.+. ..++..+..+++|.++.|...|+.++..+.+..+. .+..++..+... +. + -+.+-..
T Consensus 164 ~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~-~l-~-~~~~q~~ 231 (355)
T 3tjz_B 164 LHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRH-GL-K-SPFAYCM 231 (355)
T ss_dssp HHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSS-CC-S-CHHHHHH
T ss_pred HHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcC-CC-c-ChHHHHH
Confidence 31011122221 23566677889999999999999999999876632 222233333221 11 0 0122222
Q ss_pred HHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcch
Q 000196 666 LGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1874)
Q Consensus 666 L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~ 744 (1874)
+-.++... ++.-......+++.+.+.++. .++.|.-.++.+|-.+.......+ ....+.+...+.. .+.
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~-----~~~aVvyEa~k~I~~l~~~~~~~~----~~a~~~L~~fLss-~d~ 301 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRN-----KHEMVVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSS-PKA 301 (355)
T ss_dssp HHHHHTCC-----------------CCCCC-----SSHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSS
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHHcC-CCc
Confidence 22222221 111011224455556666654 367777777766655544222222 1222333334443 357
Q ss_pred hhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000196 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1874)
Q Consensus 745 ~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~l 798 (1874)
+.|=.|+..|..++...+..+.... ..+.+.+++ .+..++.-|+..+
T Consensus 302 niryvaLr~L~~l~~~~P~~v~~~n------~~ie~li~d-~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPSAVTACN------LDLENLVTD-ANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcHHHHHHH------HHHHHHccC-CcHhHHHHHHHHh
Confidence 7999999999998877655544322 122333433 3555665554444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.69 E-value=3.7 Score=49.74 Aligned_cols=122 Identities=13% Similarity=-0.042 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+++..|+ ..+|+..+++.+.....
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER----EVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998877653321100 0124566778888888995 68899999887653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
..+....+.++..+|...... ...++....|++|.++.++.......|-
T Consensus 336 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 384 (411)
T 4a1s_A 336 ----------------LGDRIGEARACWSLGNAHSAI------GGHERALKYAEQHLQLAXXXXXXXXXXX 384 (411)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 112345677788888877665 3578899999999999886655444443
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.032 Score=75.44 Aligned_cols=153 Identities=11% Similarity=0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHhhhC
Q 000196 66 FMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRD-REILVLASKVLGHLARAG 142 (1874)
Q Consensus 66 ~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d-~~v~~~aa~~lg~l~~~~ 142 (1874)
+.+.+.+.+.+..+ +++| .|.+.+.-+-.+.-...-- ......+..+.+..++. ++. .+|+..|+.+|..|...+
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~-D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLY-NEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTT-CSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcC
Confidence 34555666666665 6788 8887665554443211000 11122456677777774 567 899999999999998753
Q ss_pred CCcchHHHHHHHHHHHhhhcC-----------CCcchhHHHHHHHHHHHHhhcCccc--hhchHHHHHHHHHhhcCCchh
Q 000196 143 GAMTADEVEFQVKMALDWLRG-----------DRVEYRRFAAVLILKEMAENASTVF--NVHVAEFVDAIWVALRDPTLA 209 (1874)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~-----------~~~~~~r~aA~~~l~~la~~~p~~~--~~~l~~il~~i~~~l~D~~~~ 209 (1874)
+. ...++..+....+.+.. .+...+||||++.|+++....|..+ -+++|+++..+-...+||.+
T Consensus 876 ~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~- 952 (997)
T 1vsy_5 876 KE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM- 952 (997)
T ss_dssp CS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-
T ss_pred Cc--hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-
Confidence 12 12223333333333311 1122689999999999999999987 68999999999889999887
Q ss_pred HHHHHHHHHHHHHH
Q 000196 210 VRERAVEALRACLR 223 (1874)
Q Consensus 210 VR~aA~~al~~~~~ 223 (1874)
|+.++-++++.+-.
T Consensus 953 i~~tvk~tlseFkr 966 (997)
T 1vsy_5 953 TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=95.55 E-value=0.92 Score=54.82 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|..+..+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ...+|+..+++.+..-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----------~~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----------CHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCC
Confidence 4788999999999999999999999999988763 46777788888888884 16899999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
.. ..--..++.++..+|+| ++.+..|.+|++++|+.+.+|+..|......=
T Consensus 164 ~~---------------~~a~~~~g~~~~~~g~~-------------~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g- 214 (382)
T 2h6f_A 164 KN---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFK- 214 (382)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-
T ss_pred CC---------------HHHHHHHHHHHHHccCH-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC-
Confidence 00 00112244555555443 45788999999999999999999887765421
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1874)
. | ..|+..|-++|.+.+ . .......+-.+++.
T Consensus 215 ------~------~-~eAl~~~~~al~l~P-----~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 215 ------L------W-DNELQYVDQLLKEDV-----R-NNSVWNQRYFVISN 246 (382)
T ss_dssp ------C------C-TTHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHH
T ss_pred ------C------h-HHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHH
Confidence 0 1 247888888888752 2 23334444455555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.54 E-value=2.7 Score=48.51 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=149.1
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHH---HHHHHHHHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA---VVEALIHINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~---~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~E~ 1366 (1874)
.+-+..-|.|..|+-+.+..-. .+|.. .-..|.+.|-.+|++|.+..-++...... ........+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcC
Confidence 3557788999999988765432 12333 33468899999999999887665321110 12223345778
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1874)
.|++++|++.|++.+....+|+. .+....+-.++.+.|+++.-....+. +.+.+ .....+....++|+++.-
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~----~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE----CMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH----HHHHHHHHHHHCCCHHHH
Confidence 89999999999988764323432 34445555778899999877766654 22222 223445667778887776
Q ss_pred HHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCc
Q 000196 1447 AEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526 (1874)
Q Consensus 1447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~ 1526 (1874)
.+.+..+-.. .++.....- ..++-.+ .......+|.+
T Consensus 150 ~~~l~~~~~~-----------------~p~~~~~~l-------------~~a~~~l--~~~~~~~~eA~----------- 186 (291)
T 3mkr_A 150 RKELKKMQDQ-----------------DEDATLTQL-------------ATAWVSL--AAGGEKLQDAY----------- 186 (291)
T ss_dssp HHHHHHHHHH-----------------CTTCHHHHH-------------HHHHHHH--HHCTTHHHHHH-----------
T ss_pred HHHHHHHHhh-----------------CcCcHHHHH-------------HHHHHHH--HhCchHHHHHH-----------
Confidence 6544432110 000000000 0000000 00001111111
Q ss_pred hhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000196 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1874)
Q Consensus 1527 ~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1874)
...+.++.. .| ++...|...+....+.|+++.|...+.+++..+|.
T Consensus 187 -----------------------~~~~~~l~~-----~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----- 232 (291)
T 3mkr_A 187 -----------------------YIFQEMADK-----CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG----- 232 (291)
T ss_dssp -----------------------HHHHHHHHH-----SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred -----------------------HHHHHHHHh-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 122222221 23 35778889999999999999999999999887663
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1607 ~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.|......+.+++..|+. ...+...++.++.
T Consensus 233 -----~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 -----HPETLINLVVLSQHLGKP--PEVTNRYLSQLKD 263 (291)
T ss_dssp -----CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Confidence 477888889999999963 2334566666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.63 Score=51.16 Aligned_cols=159 Identities=17% Similarity=0.072 Sum_probs=109.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-----------CCcchHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-----------GEDLKRKEA 1635 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-----------g~~~~~~~A 1635 (1874)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+... | +..+|
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~~~~~~~~~~~~g---~~~~A 103 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------YLGGYMVLSEAYVALYRQAEDRERGKG---YLEQA 103 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHTCSSHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhccccc---CHHHH
Confidence 56899999999999999999999999999887763 356667777777777 7 46889
Q ss_pred HHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000196 1636 FARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1874)
Q Consensus 1636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1874)
+..+++.+..-. -.+.++..+|...... ...++.+..|++|++++ +...+|
T Consensus 104 ~~~~~~al~~~P----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 104 LSVLKDAERVNP----------------------RYAPLHLQRGLVYALL------GERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHhCc----------------------ccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcc-cchHHH
Confidence 999888765311 0133455556555543 34688999999999999 889999
Q ss_pred HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHH
Q 000196 1716 HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQI 1787 (1874)
Q Consensus 1716 ~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~ 1787 (1874)
..+|......= -...|+..|-+++... + ........+-.+++..|..++-..
T Consensus 155 ~~la~~~~~~g--------------~~~~A~~~~~~al~~~-----P-~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 155 SALAELYLSMG--------------RLDEALAQYAKALEQA-----P-KDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHT--------------CHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcC--------------CHHHHHHHHHHHHHhC-----C-CChHHHHHHHHHHHHccCHHHHHH
Confidence 99988755421 2247888899988875 2 234445566667777776655433
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.3 Score=58.26 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=69.0
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhH
Q 000196 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1874)
Q Consensus 479 ~~~~~~Al~~L~~~--~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1874)
.+.+.+|-+.+..| .|+ .+.+-.-++.+.+.++++..||+.|++.+..+... . ...
T Consensus 42 ~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~------------------~i~ 99 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--E------------------NLP 99 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--T------------------CHH
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--h------------------hhh
Confidence 44678999999988 453 23344445666778899999999999888777532 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCc
Q 000196 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1874)
-+.+|+.+|+ .+|... .|+.+.++-+. .|+ ...+..+|..+...+..+|+.+++.|..-....|
T Consensus 100 kiaDvL~QlL---qtdd~~E~~~V~~sL~sllk----~Dp----k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 100 RVADILTQLL---QTDDSAEFNLVNNALLSIFK----MDA----KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHHHHHH----HCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHHHHHHH---hccchHHHHHHHHHHHHHHh----cCh----HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcc
Confidence 2444444443 344322 23344444442 122 2245555544433456788888887765444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.49 Score=52.60 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|..++.+..+.|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|+..+++.+...
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSS----------AATAYYGAGNVYVVKEM---YKEAKDMFEKALRAG 121 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----------chHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 34788999999999999999999999988876542 36777888888888885 678999888876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. . ..++..+|.-.... ...++.+..|+++++.+|+...+|..+|......
T Consensus 122 ~~------------------~----~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 172 (243)
T 2q7f_A 122 ME------------------N----GDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCLANE- 172 (243)
T ss_dssp CC------------------S----HHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred CC------------------C----HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-
Confidence 11 0 12233344433332 2457788999999999999989998888776542
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1874)
+ -...|++.|-+++... .........+-.+.+..|+..+....+++.+..-
T Consensus 173 ------~-------~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 ------G-------MLDEALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp ------T-------CCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ------C-------CHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 1 1135677777777664 1223445666667777788777776666665433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.40 E-value=1.2 Score=50.46 Aligned_cols=172 Identities=10% Similarity=0.002 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+...+..|+ ..+|+..++..+. ..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~- 67 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN----------SPYIYNRRAVCYYELAK---YDLAQKDIETYFS-KV- 67 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----------CSTTHHHHHHHHHHTTC---HHHHHHHHHHHHT-TS-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh-cc-
Confidence 456889999999999999999999999887653 24456677788888885 6899999988765 21
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
.+....++++..+|...... ...++.+..|+++++.+|+...+|...|..+...
T Consensus 68 -----------------~~~~~~~~~~~~lg~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--- 121 (272)
T 3u4t_A 68 -----------------NATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK--- 121 (272)
T ss_dssp -----------------CTTTCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---
T ss_pred -----------------CchhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---
Confidence 12233566677777776654 3578999999999999999999999999886641
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|++.|-+++... +. .......+-...+..++..+....+++.+..-|.
T Consensus 122 -----------~~~~~A~~~~~~al~~~-----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 122 -----------GNFPLAIQYMEKQIRPT-----TT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp -----------TCHHHHHHHHGGGCCSS-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -----------cCHHHHHHHHHHHhhcC-----CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12346788888777663 22 2222223321333344655655666665544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.25 Score=52.50 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+...+..++ ...|+..++..+...
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------SAEAYYILGSANFMIDE---KQAAIDALQRAIALN 103 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999988776542 46777788888888885 578888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
... ..-...++.+|..+|+ .++.++.|+++++.+|+...+|+..|......
T Consensus 104 ~~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~- 154 (184)
T 3vtx_A 104 TVY---------------ADAYYKLGLVYDSMGE-------------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK- 154 (184)
T ss_dssp TTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ccc---------------hHHHHHHHHHHHHhCC-------------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-
Confidence 100 0111234555555444 46788999999999999999999999876541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+ -...|++.|-++|.+.
T Consensus 155 ------g-------~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 ------G-------LRDEAVKYFKKALEKE 171 (184)
T ss_dssp ------T-------CHHHHHHHHHHHHHTT
T ss_pred ------C-------CHHHHHHHHHHHHhCC
Confidence 1 2347899999998874
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.21 Score=49.59 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=88.5
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000196 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1874)
Q Consensus 1559 R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~ 1638 (1874)
|...+.| +..+.|........+.|+++.|.....++...+|. .+.+.+..+..++..|+ ..+|+..
T Consensus 4 r~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~---~~~A~~~ 69 (126)
T 4gco_A 4 RLAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------NAILYSNRAACLTKLME---FQRALDD 69 (126)
T ss_dssp ---CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHhhHHHhhcc---HHHHHHH
Confidence 3334444 34778888899999999999999999999887663 46778888999999995 6899999
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000196 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1874)
Q Consensus 1639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1874)
++..+.- .. -.++++..+|.-...+ ...++.+..|++|++++|+...++..+
T Consensus 70 ~~~al~~-~p---------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 70 CDTCIRL-DS---------------------KFIKGYIRKAACLVAM------REWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHH-CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHh-hh---------------------hhhHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9887642 11 0133455555544443 245788999999999999999998877
Q ss_pred HH
Q 000196 1719 AL 1720 (1874)
Q Consensus 1719 A~ 1720 (1874)
+.
T Consensus 122 ~~ 123 (126)
T 4gco_A 122 RN 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.8 Score=50.46 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|..++.+..+.|+++.|...+.++....+..... ...+.+....+.+++..|+ ..+|+..+++.+....
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 36689999999999999999999998877543211000 0114556677788888885 6889999888665332
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
. ..+....+.++..+|...... ...++....|++|.++.++
T Consensus 295 ~----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 E----------------LKDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp H----------------HTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHC---
T ss_pred h----------------cCCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Confidence 1 112334566666677766554 3468888999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=95.22 E-value=2.9 Score=46.54 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+......|+++.|...+.++...++. .+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------SADAHAALAVVFQTEME---PKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 3788999999999999999999999998876542 36777888888888885 6889999988765321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~~ 1725 (1874)
. ...++..+|.-.... ...++....|.++.+ ..|....+|..+|......
T Consensus 103 ~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 154 (252)
T 2ho1_A 103 R----------------------NARVLNNYGGFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154 (252)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred C----------------------cHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence 0 022333334333332 245778899999998 7788888888888765431
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|+..|-+++... .........+-.+++..|+..+....+++.+..-|.
T Consensus 155 --------------g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 155 --------------KKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp --------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred --------------CCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 12346788888888774 223455677777888888888877777777665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.21 E-value=6 Score=45.54 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+.+..+.|+++.|...+.++...+|. .....+..+-..+..+. .+..+|+..+++++...
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----------~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----------ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC 196 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC
Confidence 55788999999999999999999999998876542 22333333322332321 15789999999988652
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
... ..--..+|.++..+|+| ++....|++|++.+|+...+|..++.+...
T Consensus 197 p~~---------------~~~~~~la~~~~~~g~~-------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 197 SPT---------------LLLLNGQAACHMAQGRW-------------EAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CCC---------------HHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 110 00012245556555555 678899999999999999999999876543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=95.20 E-value=1.2 Score=55.73 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=115.7
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
+..++.+..|+..++.+++.+|..++++|..|+..+|..+...+. .-+..++.-| .+ .....|.+++.+|..+.+
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d-~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-AD-SREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GC-SSHHHHHHHHHHHHHHHT
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hC-chHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999998764332222 1122223223 33 334567777777777776
Q ss_pred hCccc-----cccchHHHHHHH-------------------HHHhhccC----------------------C--CCCChh
Q 000196 672 NCERL-----IRPYIAPIHKAL-------------------VARLLEGT----------------------G--INANNG 703 (1874)
Q Consensus 672 ~~~~~-----~~py~~~il~~l-------------------l~~l~~~~----------------------~--~~~~~~ 703 (1874)
..+.. +..-++.++..+ ...++... . ......
T Consensus 196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Q 275 (651)
T 3grl_A 196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275 (651)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHH
T ss_pred CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHH
Confidence 54421 111122222211 11111100 0 001111
Q ss_pred HHHH---HHHHHHHHHHhcccc--h-----hhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccc-------cc
Q 000196 704 IISG---VLVTVGDLARVGGFG--M-----RQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGY-------VI 765 (1874)
Q Consensus 704 v~~~---~~~~l~~La~~~g~~--~-----~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~-------~i 765 (1874)
...+ ++..+..+..-++.. . .-+-..+++.+++.+.. ......|..|+.++|.++++... .-
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 2223 344444444332210 1 11122346666666543 22456888999999998876532 11
Q ss_pred cccc-cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 766 TPYN-EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 766 ~p~~-~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
.|+. ..|.++..|+.++.+.+...+|.+++.|+...
T Consensus 356 vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp ESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2332 24778888888887667889999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.5 Score=52.26 Aligned_cols=156 Identities=15% Similarity=0.036 Sum_probs=113.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV 106 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC
Confidence 45677888999999999999999999999887653 36778888999999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1874)
... ......++.++..+|.+.... ...++.+..|++|++.+|+ ...+|..+|..+..
T Consensus 107 p~~---------------~~~~~~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 107 PGN---------------ATIEKLYAIYYLKEGQKFQQA------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTC---------------HHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 210 111244678899999998765 4689999999999999999 88999999988765
Q ss_pred HHHhhhc----cCCC---------CchhhHHHHHHHHHHHHHhhc
Q 000196 1725 VMSHYTL----RGLP---------SVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1725 ~~~~~~~----~~~~---------~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.-...-. -... .........|+..|-+++.+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4332100 0000 011223467788888887774
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=95.02 E-value=1.2 Score=49.65 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=120.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+..+...|+ ..+|+..+++.+. .
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----------NARVLNNYGGFLYEQKR---YEEAYQRLLEASQ-D 134 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-C
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHHhH---HHHHHHHHHHHHh-C
Confidence 34678999999999999999999999998876542 35677788888888885 6889998887654 0
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. ....+.++..+|...... ...++....|.++.+.+|+...+|..+|..+...
T Consensus 135 ~~-------------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 188 (252)
T 2ho1_A 135 TL-------------------YPERSRVFENLGLVSLQM------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE- 188 (252)
T ss_dssp TT-------------------CTTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-
T ss_pred cc-------------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-
Confidence 00 111344455555555443 3467889999999999999999999888776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|+..|-+++... .........+..+.+..|+..+....+++.+..-|
T Consensus 189 -------------g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 189 -------------REYVPARQYYDLFAQGG------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -------------TCHHHHHHHHHHHHTTS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 12346777888877653 22344455666667777887776666665544333
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=95.02 E-value=2.1 Score=46.53 Aligned_cols=169 Identities=12% Similarity=-0.028 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------NELAWLVRAEIYQYLKV---NDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC
Confidence 34677888888888888888888888877765442 35666777777777774 577888877765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~ 1724 (1874)
.. .+.++..+|.-..... ...++.+..|+++++ .+|....+|+.+|.....
T Consensus 73 ~~----------------------~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 73 PD----------------------SAEINNNYGWFLCGRL-----NRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp TT----------------------CHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred CC----------------------ChHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 10 0223333444333220 245677788888887 556666777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
. .-...|+..|-+++... + ........+-.+.+..|+..+....+++.+..
T Consensus 126 ~--------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 126 Q--------------GQFGLAEAYLKRSLAAQ-----P-QFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp T--------------TCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c--------------CCHHHHHHHHHHHHHhC-----C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 12235677777777663 1 22344556666667777776666655555443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.006 Score=68.22 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=9.4
Q ss_pred hhccCCChHHHHHHHH
Q 000196 509 LYLDDEDKATRKDAAL 524 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~ 524 (1874)
.++.|+++.||.+|+.
T Consensus 57 ~ll~d~~~~VR~~AA~ 72 (244)
T 1lrv_A 57 QYLADPFWERRAIAVR 72 (244)
T ss_dssp GGTTCSSHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHH
Confidence 4455666666666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.85 Score=57.14 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=133.4
Q ss_pred CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1565 PTEDVETWLKFASLCRKSGRI-SQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1565 ~~e~~~~wlk~a~laRk~g~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
+.++...|...+......|++ +.|...+.++...+|. .+...+..+.++|..|+ ..+|+..++..+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 164 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----------LVEAWNQLGEVYWKKGD---VTSAHTCFSGAL 164 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 446789999999999999999 9999999999887653 46788889999999995 689999988865
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCC---CCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGL---DDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~---~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1874)
.. . +. +.++..+|.-......+. .....++.+..|++|++++|+...+|+.+|.
T Consensus 165 ~~-~--------------------p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 165 TH-C--------------------KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp TT-C--------------------CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hh-C--------------------CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 32 0 01 244555555443320000 0024578899999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.+...+-.. +. ...-...|+..|-+++.+.+. ..........+=.+++..|+.++....+++.+..-|-
T Consensus 222 ~~~~~~~~~---~~---~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 222 AYLSLYFNT---GQ---NPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHT---TC---CHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhh---cc---ccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 887652211 10 123566899999999988521 0034555666777778888888877777776654443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=94.90 E-value=1 Score=50.93 Aligned_cols=174 Identities=10% Similarity=0.046 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++.++...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------WAADAQFYLARAYYQNKE---YLLAASEYERFIQIY 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------chHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999987765310 126778889999999995 689999999987643
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCC--CCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH--
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPP--GLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN-- 1722 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~--~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n-- 1722 (1874)
... .....+++.+|.-.....+ .......++.+..|+++++.+|+...++..++...
T Consensus 83 p~~-------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 83 QID-------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp TTC-------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred CCC-------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 211 1123334444443333100 00123568899999999999998766664332221
Q ss_pred --------HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc
Q 000196 1723 --------TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH 1779 (1874)
Q Consensus 1723 --------~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~ 1779 (1874)
+.+-..+... .-...|+..|-+++...+ +.....+...++-.+++..
T Consensus 144 ~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 144 RAKLARKQYEAARLYERR-------ELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHh
Confidence 1111111111 123578888888887642 1122444566666666655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.84 E-value=1.9 Score=50.17 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=117.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQ-VMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
+....|+.++.+..+.|+++.|.....++...+|. .+. +.+.++.++...|+ ..+|...+++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----------DPTLVYIQYMKFARRAEG---IKSGRMIFKKARED 163 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS----------CTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----------CccHHHHHHHHHHHHhcC---HHHHHHHHHHHHhc
Confidence 56889999999999999999999999999886542 244 77888888888885 57888888876531
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
.. .. +.++...|.-.... ....++....|.+|++.+|+...+|..+|.+..+
T Consensus 164 ~p------------------~~----~~~~~~~a~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~- 215 (308)
T 2ond_A 164 AR------------------TR----HHVYVTAALMEYYC-----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH- 215 (308)
T ss_dssp TT------------------CC----THHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred CC------------------CC----HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 10 01 22232222211111 1457899999999999999999999999877432
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.+ -...|+..|-+++.... ..++....-..++..+...+|+..++....++.+...|
T Consensus 216 ------~g-------~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 216 ------LN-------EDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ------TC-------CHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ------CC-------CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 11 23477888888887410 01112233345556666778888777766666655444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=2.2 Score=52.97 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccchhhhhhhccchhccccc---ccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-------hhh
Q 000196 1288 IRLLGALAEKCRAFAKALHYKEMEFEGARS---NRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-------LDV 1357 (1874)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~---~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-------~~~ 1357 (1874)
+..||.+-..-|.|..|+-+++....-.+. ...++....+...|..+|..+|+.+.+...+..+... ...
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 346788888889999999888765431110 0012223345667899999999999998776643211 001
Q ss_pred hhcHH-----H-HHHh--cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1358 QLKES-----W-YEKL--QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1358 ~~~~~-----~-~E~l--g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
..... | +-++ +++++|+++|++.+...|+. .+...++..++..+|.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Confidence 11111 1 2233 46999999999998765543 3455555555544443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=1.1 Score=49.96 Aligned_cols=173 Identities=11% Similarity=0.038 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...+ . .+.+.+..+..++..|+ ..+|+..++..+....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------DITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----------cHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999988764 1 36778889999999995 6899999998765322
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc------------------
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT------------------ 1709 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~------------------ 1709 (1874)
.. ..+....+.++..+|...... ...++.+..|++++++++
T Consensus 70 ~~---------------~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 70 EM---------------RADYKVISKSFARIGNAYHKL------GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128 (258)
T ss_dssp HT---------------TCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred cc---------------ccchHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence 11 112233466666677666554 346777777777777544
Q ss_pred --------cchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCC
Q 000196 1710 --------KWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGA 1781 (1874)
Q Consensus 1710 --------~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~ 1781 (1874)
....+|...|...... .-...|+..|-+++...+ ........+-.+.+..|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTK--------------SDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCC
Confidence 4444444444433220 123467777777776641 223445556666677777
Q ss_pred cHHHHHHHHhcccC
Q 000196 1782 TEEVQIALQKGFAH 1795 (1874)
Q Consensus 1782 ~~~v~~~~~~~~~~ 1795 (1874)
.++....+++.+..
T Consensus 189 ~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 189 FPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.48 Score=49.76 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=104.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----~-~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|...|+.+.+...+....... . .......+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45777778889999998888766432 3345677789999999999999988887543211 1 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+.|+|++|+..|++.+...++. ......+..++..+|+|+.-....+... .+... ......+.+.+..|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG----KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCC
Confidence 88999999999999988654432 3456778889999999987766655422 11122 223455678888999
Q ss_pred hhhHHHHHhh
Q 000196 1443 WDQMAEYVSR 1452 (1874)
Q Consensus 1443 Wd~~~~~~~~ 1452 (1874)
|+.-.++...
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=94.66 E-value=1 Score=47.23 Aligned_cols=165 Identities=12% Similarity=-0.004 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++....+ ..+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----------FDVDVALHLGIAYVKTGA---VDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----------cChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 366788889999999999999998877765543 236677778888888885 6789988888765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|..+|......
T Consensus 74 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 123 (186)
T 3as5_A 74 D----------------------NVKVATVLGLTYVQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-- 123 (186)
T ss_dssp T----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred C----------------------CHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--
Confidence 0 012233333333322 2346788889999999998888888888765431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
+ -...|+..|-+++... .........+-.+.+..|+..+....+++.+
T Consensus 124 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 124 -----G-------RFDEAIDSFKIALGLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp -----T-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----C-------cHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 2346777777777764 1223445556666677777766655555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.55 E-value=6.2 Score=47.38 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=72.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1874)
.+|....+.|.|..|+.+++......+ .++ ......|..+|...|+++.+...++.+-.. .
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 568888899999999999988765321 122 245667889999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhC
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.....+..|...|+|++|+..|++.+...+ ++.........+-.++..+|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 011234458899999999999998775321 111112233445556666666
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.51 E-value=2 Score=47.16 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. ..+.+.+..+...+..|+ ..+|+..++..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTAYNCGVCADNIKK---YKEAADYFDIAIKKN- 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhC-
Confidence 4688999999999999999999999998887641 124566668888889995 689999998876421
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+..+.++..+|.-.... ...++.+..|+++++.+|+....+..++.+...+-.
T Consensus 73 ---------------------p~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 125 (228)
T 4i17_A 73 ---------------------YNLANAYIGKSAAYRDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQ 125 (228)
T ss_dssp ---------------------CSHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhH
Confidence 11344455555555443 346788999999999999988665555544333322
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc--hHHhHHHHHHHHHhcC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD--SLQDILRLLTLWFNHG 1780 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~--~~q~~~RlLtLwf~~g 1780 (1874)
.+... .-...|++.|-+++.+. .. .......+-.+++..|
T Consensus 126 ~~~~~-------~~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 126 KFQQA-------GNIEKAEENYKHATDVT------SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHT-------TCHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------ccHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHHHHH
Confidence 22111 23458999999999874 23 2344444555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.73 Score=43.93 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+..+...|+++.|...+.++....|. .+.+.+..+...+..|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCc
Confidence 4678999999999999999999999998876542 36778888999999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|..++...
T Consensus 70 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 D----------------------WGKGYSRKAAALEFL------NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 123344445444433 2467888999999999999999999888653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=1.8 Score=47.83 Aligned_cols=169 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|+..+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..++..+....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----------DAIPYINFANLLSSVNE---LERALAFYDKALELDS 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 3678899999999999999999999998876542 36778888999999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
. .+.++..+|.-.... ...++.+..|+++.+.+|+...+|+..|......
T Consensus 89 ~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 138 (243)
T 2q7f_A 89 S----------------------AATAYYGAGNVYVVK------EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-- 138 (243)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--
T ss_pred c----------------------chHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 0 123334444433332 2457888999999999999999999888775531
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+ -...|+..|-+++... .........+-.+++..|+.++....+++.+..-|
T Consensus 139 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 139 -----E-------QPKLALPYLQRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp -----S-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred -----c-------cHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1 2346788888888764 22344566777788888988887777777665444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.33 E-value=16 Score=46.17 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1567 EDVETWLKFASLCRK-------SGRIS-------QARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk-------~g~~~-------~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+.|+.++.+..+ .|+++ .|...+.++.. ..|. .+.+.+.++.+....|+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~----------~~~l~~~~~~~~~~~g~--- 336 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 336 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 458999999999986 69987 78888888875 4442 46788889999998885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|...+++.+.. .. .+ .+.++..+|.+.... ...++....|.+|++..|..
T Consensus 337 ~~~A~~~~~~al~~-~p-----------------~~---~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI-ED-----------------ID---PTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHHHHHHHHHHHS-SS-----------------SC---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCc-cc-----------------cC---chHHHHHHHHHHHHh------cCHHHHHHHHHHHHhccCCc
Confidence 67899988887652 10 01 124566777766543 24678899999999999888
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
+..|..+|...+.. .+ -...|.+.|-+++...+ ........+..+....|+..+....+++
T Consensus 390 ~~~~~~~a~~~~~~------~~-------~~~~A~~~~e~al~~~p------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 390 HHVYVTAALMEYYC------SK-------DKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp THHHHHHHHHHHHH------TC-------CHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------cC-------ChhHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 78877777654331 11 12467777888887642 2344456666667778888888888888
Q ss_pred cccCC--Chh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000196 1792 GFAHV--NIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1874)
Q Consensus 1792 ~~~~i--p~~----~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPq 1836 (1874)
.+... ++. .|..++-- -.+.+ +. ..+..+..+..+.+|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~-e~~~G--~~---~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAF-ESNIG--DL---ASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHH-HHHSS--CH---HHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHH-HHHcC--CH---HHHHHHHHHHHHHCch
Confidence 77643 333 67665532 22333 31 3355666667777773
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=1.1 Score=43.95 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+..+.+.|+++.|...+.++...++. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 45889999999999999999999999998876542 36777888888888884 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
.. .+.++..+|.-.... ...++....|+++.+.+|+...+|..++.....
T Consensus 81 ~~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PT----------------------FIKGYTRKAAALEAM------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CC----------------------chHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 10 122344444433332 245788899999999999999999988876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=94.23 E-value=2.8 Score=45.37 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+.++... |+ ..+|+..++..+.
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~- 105 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----------SAEINNNYGWFLCGRLNR---PAESMAYFDKALA- 105 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT-
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc-
Confidence 34678899999999999999999999998876542 356777888888888 84 6889999988765
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
.... .....++..+|...... ...++.+..|.++++.+|+...+|..+|..+...
T Consensus 106 ~~~~-------------------~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 106 DPTY-------------------PTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp STTC-------------------SCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcCC-------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 1100 11234445555554443 3467889999999999999999999988876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL 1789 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~ 1789 (1874)
+ -...|+..|-+++... +.........+..+....|...+....+
T Consensus 161 -------~-------~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 161 -------G-------QLGDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp -------T-------CHHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------C-------CHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1236677777777664 2022333344445556666655544333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=1 Score=43.90 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+..+...|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|+..++..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGN---YAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhcCc
Confidence 4678999999999999999999999998876542 36777888888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|+.+|.....
T Consensus 78 ------------------~----~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------------A----YSKAYGRMGLALSSL------NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------------c----CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 123455555555443 346788999999999999999999988877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.58 Score=61.61 Aligned_cols=149 Identities=14% Similarity=0.059 Sum_probs=102.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1874)
.||.+..+-|.|..|+-+.+....-. ++.....-.|..+|.++|+.+.|.-.++.+-. ..+ ....+..|
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777788888888887766532 34467778899999999999999887775432 111 11234458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.++|+|++|+++|++.++..++. .+....+-.++..+|+++.-....+... .+...+.. ...+.+...+|+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~----~~L~~~l~~~g~ 160 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY----CNLAHCLQIVCD 160 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH----HHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----hhhhhHHHhccc
Confidence 89999999999999988765443 4567778889999999987665554321 22222222 234567888999
Q ss_pred hhhHHHHHh
Q 000196 1443 WDQMAEYVS 1451 (1874)
Q Consensus 1443 Wd~~~~~~~ 1451 (1874)
|+.-.+...
T Consensus 161 ~~~A~~~~~ 169 (723)
T 4gyw_A 161 WTDYDERMK 169 (723)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 998766544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=93.93 E-value=1.3 Score=42.61 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+....+.|+++.|...+.++....+. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALELD 73 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Confidence 34688999999999999999999999998876542 35677788888888885 688999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. . ...+..+|...... ...++....|+++.+.+|+...++..+|....
T Consensus 74 ~~------------------~----~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PN------------------N----AEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TT------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Cc------------------c----HHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 10 0 22344445444433 24678899999999999999999988887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.27 Score=48.74 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~----~~~~~~~~~ 1364 (1874)
..|....+-|.|..|+.+.+..+... +......-.+..+|..+|+.+.+...++.+-. .. ..-..+..|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45778888899999998887766432 34456677788888888888887776664322 10 011234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1874)
.++|+|++|+..|++.++-.|+. .+...++-+||
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN---EEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHhc
Confidence 88888888888888887654443 34444444553
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.27 Score=54.35 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=110.7
Q ss_pred hHHHHHHHhCCCCH--HHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc-
Q 000196 600 CLSAIFAALNDEDF--DVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER- 675 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~--~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~- 675 (1874)
.++.++..++.+++ +++..|...+..++..++..-.-... ..+..++. +..+ ++...++.|+++|..++....+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~-lL~s-~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ-LLKV-QNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH-GGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHH-HHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence 36667777776666 88888888888888766432100011 11222333 3345 5788999999999999864332
Q ss_pred --ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh-------c------
Q 000196 676 --LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL-------D------ 740 (1874)
Q Consensus 676 --~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~-------d------ 740 (1874)
.+.. ...++.|+..++.. .+..++..+..+|-.|+...... ......-+|.+++.+. +
T Consensus 87 k~~I~~--~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 87 KLEVAE--LNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp HHHHHH--TTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred HHHHHH--cCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccc
Confidence 1211 13566777777642 26778888888888887543211 1223344666655331 1
Q ss_pred --CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHh
Q 000196 741 --GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 741 --~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~-----~~~~~vr~~al~~lg~l 801 (1874)
..+.+++.+|..+|..++......=.-..+.+.+++.|+.+++. ..+.+.++.++.+|.-+
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 12457889999999988754211101111235577777777753 12345556655555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=93.84 E-value=2.3 Score=51.22 Aligned_cols=141 Identities=8% Similarity=0.050 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|...+.+..+.|+ ++.|...+.++...+|. .+.+.+-.+.++...|+ ..+|+..+++.+..
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------~~~a~~~~g~~~~~~g~---~~eAl~~~~kal~l 195 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQ 195 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh
Confidence 346778888888888997 99999999999988763 36677777778878885 46799988887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
-... ..--..++.++..+|+| ++.+..|.+|++++|++..+|+..|.....+
T Consensus 196 dP~~---------------~~a~~~lg~~~~~~g~~-------------~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 196 DAKN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CccC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1100 00112345555555554 4578999999999999999999999876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
... ........++..|-++|.+.
T Consensus 248 ~~~--------~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 248 TGY--------NDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TCS--------CSHHHHHHHHHHHHHHHHHS
T ss_pred cCc--------chHHHHHHHHHHHHHHHHHC
Confidence 210 01122445578999999885
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.57 E-value=1.4 Score=52.56 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+....+..++..|+ ..+|+..+++.+....
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPN----------NLKALMALAVSYTNTSH---QQDACEALKNWIKQNP 164 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCc
Confidence 4678899999999999999999999998877552 36777888889999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~~ 1725 (1874)
..... .....-.+.++..+|..... ....++.+..|+++++.+|+ ...+|..+|......
T Consensus 165 ~~~~~------------~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 165 KYKYL------------VKNKKGSPGLTRRMSKSPVD------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHCC-------------------------------C------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred cchHH------------HhhhccchHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 00000 00000011122222222221 12345667777777777777 667777777654431
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|+..|-+++... .........+-.+++..|...+....+++.+..-|.
T Consensus 227 --------------g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 227 --------------GEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp --------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------------CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 12235666666666653 122334555666666677766666666665544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.69 Score=48.04 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+..-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------NPIYLSNRAAAYSASGQ---HEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999887653 46788888999999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
. ..+.++..+|.-...+ ...++.+..|+++++++|+...+|+..+..
T Consensus 76 p----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 P----------------------KYSKAWSRLGLARFDM------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp T----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred C----------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 0134455555555443 246788999999999999999888776655
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=93.46 E-value=1.8 Score=45.70 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=90.0
Q ss_pred hHHHHHHHhccCCCCcchhhccHhhHHHHHHHh--CCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC
Q 000196 576 TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL--NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1874)
Q Consensus 576 ~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l--~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1874)
..|.+++++|..+..+.+.+ |-++.++.... +=.+..+-...++....|..+.--.+.||+.+++...++.+-...
T Consensus 23 ~~r~~aL~sL~~D~gL~~Ll--Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQLV--PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp TTHHHHHHHHHHCSSCTTTH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCChhhhH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 56999999997544333222 23333333221 222456666677888888876656678999999998888764321
Q ss_pred -CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 654 -ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 654 -~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
+....|+.|+.+++.+++..+......-+.|+..+.+.+.|+. ......-+++.++..+
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~---~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN---RSEDSQYGALYCLSIL 160 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHHh
Confidence 2226899999999999998776655556788999999998763 2444455666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.27 E-value=1.1 Score=45.07 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+..+.+.|+++.|...+.++...++... ..+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLED---YDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 4589999999999999999999999999987755210 014667777888888885 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
... ..-...++.++...|+ .++....|+++++++|+...+|..++..
T Consensus 96 ~~~---------------~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGD---------------VKALYRRSQALEKLGR-------------LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100 0011224444544444 4678899999999999999998877765
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=93.22 E-value=29 Score=45.60 Aligned_cols=335 Identities=10% Similarity=0.106 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccc-cCcchhHHHHHHHHHHhhcccCCChH--------HHHHHHHHHH
Q 000196 67 MDQLYDRISGLLES-NDAAENLGALRAIDELIDVA-LGENASKVSKFSNYMRTVFEVKRDRE--------ILVLASKVLG 136 (1874)
Q Consensus 67 ~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~-~~~~~~~~~~~~~~L~~~l~~~~d~~--------v~~~aa~~lg 136 (1874)
++.|..++...+++ .+...=.+....|...+... .+.....+.++.+.+...+.|++.-. +...+..-..
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 66677766666653 11211122333333334332 12235567888888888887765432 2223333334
Q ss_pred HHhhh--------CC--Ccc----hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhchHHHHHHH
Q 000196 137 HLARA--------GG--AMT----ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHVAEFVDAI 199 (1874)
Q Consensus 137 ~l~~~--------~g--~~~----~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p---~~~~~~l~~il~~i 199 (1874)
|+-.- +. .++ ..||+-..+-++-.+.+ ++.....-+..+++.||.-.| +.+ +|.+++.+
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~ 385 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQN-KNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDL 385 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHH
Confidence 44321 10 112 34566666666655554 344445667888999999778 654 45666666
Q ss_pred HHhhcC---CchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch----
Q 000196 200 WVALRD---PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---- 272 (1874)
Q Consensus 200 ~~~l~D---~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---- 272 (1874)
..+|.. ..+.--.+|..++..+...+.... ..+ .++..++..++.|++.++ ..---.++..+..+...-+
T Consensus 386 y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~-~yr-~hl~~lL~l~LpgID~ND-~~KT~~tl~fi~~i~s~ipi~d~ 462 (799)
T 1vsy_4 386 YDTLADQFINSRHRIISSLKQFTRVIRFIVMDK-LYR-VHITNVLSMLVSKLDMND-TNLTSNLINGIVSIAAFIPIQDL 462 (799)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST-TGG-GHHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHHTSCBCCC
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHhcCc-ccH-HHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 677655 344444567888887777666332 233 366788888999998774 4434455555555543100
Q ss_pred ----hh--------------------------------------------hHHHHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 000196 273 ----EF--------------------------------------------MMSRYREVAEIVLRYLEHR-DRLVRLSITS 303 (1874)
Q Consensus 273 ----~~--------------------------------------------~~~~~~~i~~~ll~~~~~~-~~~vr~~~~~ 303 (1874)
+. +..-....++.++.+++++ +..+-..+..
T Consensus 463 s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~ 542 (799)
T 1vsy_4 463 TGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQ 542 (799)
T ss_dssp CCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11 1112222344555555532 2222233333
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch---HHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC-----C
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS---GFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----R 375 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~---a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~-----~ 375 (1874)
++..+.....++..+..++.++.++.+-......+.. +..-++.++.+-++.+..++|.++..|+..+.++ .
T Consensus 543 ~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs 622 (799)
T 1vsy_4 543 TTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRS 622 (799)
T ss_dssp HHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4444433333333344555555555443332222222 2222566666655555677788887777655332 1
Q ss_pred C-C--CCc----hhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 000196 376 G-K--PSL----EALACVGNIARAMGPVMEPHVRGLLDIM 408 (1874)
Q Consensus 376 ~-~--~~~----~a~~~l~~l~~~~g~~~~p~l~~ll~~l 408 (1874)
. + +.. --+.+++.+....|+.+.+|.+++++.+
T Consensus 623 ~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il 662 (799)
T 1vsy_4 623 TSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFM 662 (799)
T ss_dssp SSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHH
Confidence 1 1 111 2356777777777787888877766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=93.16 E-value=4.3 Score=48.20 Aligned_cols=184 Identities=11% Similarity=0.063 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYT 162 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35778899999999999999999999998877652 36777888899999995 689999999877532
Q ss_pred cCCCcccccc-ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAA-STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~-~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~ 1723 (1874)
.......... ...............+.++ ..|+| ++.+..|.++++.+|+ ...+|...|....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF-------------LEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHH-------------HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH-------------HHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 2110000000 0000000000001223333 44443 5566777777777777 6677777776644
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.. .-...|+..|-+++... .........+-.+.+..|+..+....+++.+..-|
T Consensus 229 ~~--------------g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 229 LS--------------GEYDKAVDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred Hc--------------CCHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 31 12235666676666653 12233445556666677776666666665554333
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=92.92 E-value=1.6 Score=46.15 Aligned_cols=101 Identities=10% Similarity=0.156 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc--chhhHHHHHHHHHHHHhhccccccccccchHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA--AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~--~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1874)
+.......+..+..|..+-.-.+.||+.+++|.++.++-... ....|+-|...|+.++...+... | .-.|.++..+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~-~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-K-TLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-T-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-c-hHHHHHHHHH
Confidence 444556666677777776666899999999999999985321 22699999999999999988642 2 2348889999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHhcc
Q 000196 779 LKMLNGE-LVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 779 l~~l~~~-~~~~vr~~al~~lg~lga 803 (1874)
.+.+.++ .+...+.-|+..+..+|.
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 8888544 477888889888888873
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.89 E-value=1.8 Score=42.31 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999887653 36778888889999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~~ 1721 (1874)
. ..+++..+|.-...+ ...++.+..|+++.+++ |+...+|..++..
T Consensus 70 ~----------------------~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 N----------------------FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred C----------------------cHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 133444555544443 24578899999999999 8888888777755
Q ss_pred H
Q 000196 1722 N 1722 (1874)
Q Consensus 1722 n 1722 (1874)
.
T Consensus 122 ~ 122 (126)
T 3upv_A 122 S 122 (126)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.84 E-value=1.1 Score=44.28 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|-.....+.+.|+++.|.....++..++|. .+.+..-.+.+++..|+ ..+|+..++..+.-...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------NITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcc
Confidence 566778889999999999999999999888763 35667778888889995 68999999887643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
........+++|..+|.....+ ...++.++.|++|++.+|+
T Consensus 75 ---------------~~~~~~~~a~~~~~lg~~~~~~------~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------------TRADYKLIAKAMSRAGNAFQKQ------NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSCC
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcC
Confidence 1123456899999999988775 4689999999999988775
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=92.63 E-value=7.5 Score=44.92 Aligned_cols=178 Identities=12% Similarity=-0.005 Sum_probs=118.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+....+..++..|+ ..+|+..++..+...
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------DIAVHAALAVSHTNEHN---ANAALASLRAWLLSQ 119 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999998877542 36777888899999995 689999998876532
Q ss_pred cCCCccccccccccccccCcchhhH------HHHHHHH-hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLI------ARVYLKL-GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~------a~~~~~~-g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
..... ..... +.....+ |.|.. ......++....|.++.+.+|+...+|...|
T Consensus 120 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 120 PQYEQ---------------LGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTTTT---------------C--------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CccHH---------------HHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 11100 00000 0000011 21100 0123457788999999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
..+... .-...|++.|-+++... .........+-.+++..|..++....+++.+..-|
T Consensus 180 ~~~~~~--------------~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 180 VLYNLS--------------NNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 775531 12346788888888764 22345566777788888888877777777665444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.97 Score=49.22 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH----------------HHHHHHhcCCcch
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA----------------YLKYQWSLGEDLK 1631 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e----------------~~k~lw~~g~~~~ 1631 (1874)
..+.++.-+....+.|+++.|...+.++...+|. .+.+.+. .+..+...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----------RTEMYYWTNVDKNSEISSKLATELALAYKKNRN--- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---
Confidence 3567888889999999999999999998876552 2344444 7888888885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|+..+++.+..-... ..--..++.+|...|+ .++.+..|+++++++|+.
T Consensus 70 ~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQ-------------EKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCC
Confidence 689999999877532100 0011224455544444 477889999999999999
Q ss_pred hHHHHHHHHHHHH
Q 000196 1712 GKAWHSWALFNTA 1724 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~ 1724 (1874)
..+|+.+|.+.+.
T Consensus 122 ~~a~~~lg~~~~~ 134 (208)
T 3urz_A 122 LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.54 E-value=11 Score=43.41 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=97.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1874)
..|....+.+.|..|+.+++......+ .++ ....-.+..+|...|+++.+...+..+... .
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 457788889999999999988765321 122 245568899999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC--------------------HHHHHH
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR--------------------WEELNN 1412 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~--------------------w~~l~~ 1412 (1874)
.....+..|...|+|++|+..|++.+... .++.........+-.++..+|+ ++.-..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 01123345788999999999999976532 1211112234566677788888 765554
Q ss_pred HHhhhcC----CCChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000196 1413 LCKEYWT----PAEPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1413 ~~~~~~~----~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
..+.... ..+...........+...+..|+|+.-.++...
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4432110 001122222333456677888888887666553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.4 Score=47.55 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh-----------
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----------- 1356 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----------- 1356 (1874)
..||....+.+.|.+|+.+.+..+.- ++......-.+..+|..+|+.+.+.-.+..+-. ..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 46899999999999999998877653 234456777889999999999988876654321 000
Q ss_pred hhhcHHHHHHhcCHHHHHHHHHHHHhccCCC
Q 000196 1357 VQLKESWYEKLQRWDDALKAYTNKASQASNP 1387 (1874)
Q Consensus 1357 ~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~ 1387 (1874)
....+..++++|+|++|+++|++.+...+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 1123445889999999999999988765554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=92.42 E-value=2.5 Score=40.91 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------NMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 3578999999999999999999999998876542 36777888888888885 6889999988765422
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. .......+.++..+|...... ...++....|+++.+..| ....+...+....
T Consensus 70 ~~---------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 EN---------------REDYRQIAKAYARIGNSYFKE------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HS---------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cc---------------chhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 10 112234467777778777654 357889999999999988 4677776665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.41 E-value=1.5 Score=54.78 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=100.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---------CCcchHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---------GEDLKRKEAFA 1637 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~---------g~~~~~~~Al~ 1637 (1874)
++...|..++.+..+.|+++.|...+.++...+|. +......+.+++.. | +..+|+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~lg~~~~~~~~~~~~~~~g---~~~~A~~ 200 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----------KVSLQNLSMVLRQLQTDSGDEHSR---HVMDSVR 200 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHTTCCCSCHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHhccCChhhhhh---hHHHHHH
Confidence 45789999999999999999999999999887642 45667777777777 6 4678999
Q ss_pred HHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHH
Q 000196 1638 RLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKA 1714 (1874)
Q Consensus 1638 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~ 1714 (1874)
.+++.+...... ..--..++.+|..+ +.. . +.+....++.+..|++|++++| +...+
T Consensus 201 ~~~~al~~~p~~---------------~~~~~~lg~~~~~~--~~~-~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 201 QAKLAVQMDVLD---------------GRSWYILGNAYLSL--YFN-T--GQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp HHHHHHHHCTTC---------------HHHHHHHHHHHHHH--HHH-T--TCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHHHHHHhCCCC---------------HHHHHHHHHHHHHH--HHh-h--ccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 988876531100 01112355555555 000 0 0001235788999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|+.+|..+... .-...|+..|-+++.+.
T Consensus 261 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 261 HLNRATLHKYE--------------ESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 99999886641 12347899999999885
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.3 Score=50.11 Aligned_cols=108 Identities=11% Similarity=0.005 Sum_probs=76.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000196 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1874)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~ 1655 (1874)
..+.|+.|.++.|...+.++...+|. .+...+..+++.+..|+ ..+|+..+++.+.--.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~----------~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~p-------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ----------KSIKGFYFAKLYYEAKE---YDLAKKYICTYINVQE-------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH----------HHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------
Confidence 45567778888888888877654321 24556778899999995 6899999998775311
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
-.+.++..+|.-.... ...++.+..|++|++++|+...+|+.+|....+
T Consensus 63 --------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 63 --------------RDPKAHRFLGLLYELE------ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp --------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHc------CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0133455555555443 246788999999999999999999999987654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=2.7 Score=47.45 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccc
Q 000196 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTS 1659 (1874)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~ 1659 (1874)
..+|+++.|...+.++....+...+ ..+.+.+..+......|+ ..+|+..+++.+.....
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDD------ERAQLLYERGVLYDSLGL---RALARNDFSQALAIRPD----------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHH------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC-----------
T ss_pred CccchHHHHHHHHHHHHhcccccCc------hhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCC-----------
Confidence 4457788888888887765321111 135677788888888885 68899999887653110
Q ss_pred cccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchh
Q 000196 1660 LTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAP 1739 (1874)
Q Consensus 1660 ~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~ 1739 (1874)
.+.++..+|...... ...++.+..|+++++.+|+...+|+.+|...... +
T Consensus 76 -----------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------g------ 125 (275)
T 1xnf_A 76 -----------MPEVFNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-------G------ 125 (275)
T ss_dssp -----------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-------T------
T ss_pred -----------cHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh-------c------
Confidence 123344455544433 2467889999999999999999999998776541 1
Q ss_pred hHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH
Q 000196 1740 QFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL 1802 (1874)
Q Consensus 1740 ~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl 1802 (1874)
-...|+..|-+++...+ .+. .....+.+.+..|+..+....+.+.+...|...|.
T Consensus 126 -~~~~A~~~~~~a~~~~~-----~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 126 -RDKLAQDDLLAFYQDDP-----NDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp -CHHHHHHHHHHHHHHCT-----TCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred -cHHHHHHHHHHHHHhCC-----CCh--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence 23467777777777642 222 22223334455566666666666666555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.88 Score=44.30 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=55.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++......+.|..|+.+++...... +........+..+|..+|+.+.+...+...... .. ....+..+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555566666777776666554321 222345556666666666666666555532211 00 11122345
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.+.|+|++|...|++.+...++. ......+-.|+..+|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHhc
Confidence 66666666666666665543322 2233444555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.70 E-value=11 Score=42.98 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--------hh-----hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCC
Q 000196 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--------LD-----VQLKESWYEKLQRWDDALKAYTNKASQA-----SNP 1387 (1874)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--------~~-----~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~ 1387 (1874)
.....|..+|...|+.+.+.-.++.+... .. ....+..|...|+|++|+..|++.+... .++
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556677777777777777666543220 00 1122334778899999999998877531 222
Q ss_pred chhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC------CChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000196 1388 HIVLEATLGRMRCLAALARWEELNNLCKEYWTP------AEPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1388 ~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~------~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
.........+-.|+..+|+|+.-....+..... .+...........+.+.+..|+|+.-.++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222445567778888899987666555432110 01111222333456677888888877665553
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=91.69 E-value=29 Score=45.53 Aligned_cols=262 Identities=9% Similarity=0.053 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHH
Q 000196 107 KVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 107 ~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~r~aA~~~l~~la 181 (1874)
...+|..-+..++-. +.+..++..+..++..|+........-.++..++++-+-|.+ -....+-.+|+..+..++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345565544322211 468999999999999999852211245777888888887764 333344466777777666
Q ss_pred hhc--CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc------------------------------
Q 000196 182 ENA--STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE------------------------------ 229 (1874)
Q Consensus 182 ~~~--p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~------------------------------ 229 (1874)
.-. ...+.+|+..++...+.++-=.++.---.+...+..++..+.-.+
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 542 235678999999999998854444333345555554444222110
Q ss_pred ------------------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhh
Q 000196 230 ------------------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLE 291 (1874)
Q Consensus 230 ------------------~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~ 291 (1874)
...-.+|...+++.+..-+.+..+.....+--.++..++...++ +-++.++..+..+..
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 01133566666666665554322222222222234444443332 233444445555443
Q ss_pred cc-hhHHHHHHHHH----hHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--------C--Ccc----hHHHHHHHHHhhc
Q 000196 292 HR-DRLVRLSITSL----LPRIAHFLRDRFVTNYLKICMNHILTVLRIP--------A--ERD----SGFIALGEMAGAL 352 (1874)
Q Consensus 292 ~~-~~~vr~~~~~~----i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--------~--~R~----~a~~alg~la~~v 352 (1874)
+. .+...+++..+ +..++..+|+ ..+.+++.+...+...+.+. + .|. --+..|+.+....
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 32 12222333333 4566667777 44556666666665444332 0 122 3566777777888
Q ss_pred hhhhhhhhHHHHHHHHHhhc
Q 000196 353 DGELFHYLPTITSHLREAIA 372 (1874)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~L~ 372 (1874)
|..+.+|-+++++.+.-.+.
T Consensus 648 g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 648 HESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp GGGGGTTHHHHHHHHHHHHH
T ss_pred cHHHHccHHHHHHHHHHHHH
Confidence 88888999999998887664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=91.47 E-value=4.5 Score=39.78 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALELD 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999998887653 36777888888888885 688999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc-----chHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK-----WGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~-----~~k~w~~wA~~ 1721 (1874)
.. .++++..+|.-...+ ...++.+..|+++++++|+ ....|...+..
T Consensus 74 p~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 74 GQ----------------------SVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred ch----------------------hHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 10 123444555544443 2457888999999999988 66666666655
Q ss_pred HHH
Q 000196 1722 NTA 1724 (1874)
Q Consensus 1722 n~~ 1724 (1874)
...
T Consensus 126 ~~~ 128 (137)
T 3q49_B 126 KKK 128 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.35 E-value=23 Score=42.21 Aligned_cols=178 Identities=8% Similarity=-0.004 Sum_probs=117.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000196 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1874)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~ 1654 (1874)
.+......|+++.|...+.++........+. .....+.+..+.+.+..|+ ..+|+..+++.+.-....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~----- 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDR----IEKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEH----- 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhC-----
Confidence 7888999999999999999987652211100 0123556667777888885 688999998876544321
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHHh
Q 000196 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG------KAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~------k~w~~wA~~n~~~~~~ 1728 (1874)
.......+.++..+|.-...+ ...++.+..|.+|.++.++.. .+|+..|..+..
T Consensus 177 ----------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---- 236 (383)
T 3ulq_A 177 ----------EAYNIRLLQCHSLFATNFLDL------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS---- 236 (383)
T ss_dssp ----------STTHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred ----------ccchHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----
Confidence 112445678888888877665 357899999999998876543 355555555432
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.+ -...|++.|-+++.+................+-.+++..|+.++....+++.+.
T Consensus 237 ---~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 237 ---QS-------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp ---TT-------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC-------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 234678888888876321111134455567777888888988877776666653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=2.5 Score=43.06 Aligned_cols=114 Identities=10% Similarity=-0.063 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+....|+.++++..+.|+++.|...+.++...+|. .+.+.+..+.+....|+ ..+|+..++..+.--
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----------DPKAHRFLGLLYELEEN---TDKAVECYRRSVELN 95 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhC
Confidence 45677899999999999999999999999988763 46788888899999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-HHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-AYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~-~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
... ..--..+|.+|...|++ ++..+ .+++|++++|+...+|.-.+..
T Consensus 96 p~~---------------~~~~~~la~~~~~~~~~-------------~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 96 PTQ---------------KDLVLKIAELLCKNDVT-------------DGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp TTC---------------HHHHHHHHHHHHHHCSS-------------SSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 100 00112244455444443 23344 4588999999999988766644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.30 E-value=5.3 Score=48.33 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....++..+....+.|+++.|...+.++....+.. +. ....+.+..+...+..|+ ..+|+..+++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~-----~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LR-----TLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hh-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999988765421 00 001456777888888895 6889999888765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------cccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~~~k~w~~wA~~ 1721 (1874)
. ..+....+.++..+|...... ...++.+..|.++.++ .+....+|..+|..
T Consensus 118 ~----------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 118 S----------------MNDRLGEAKSSGNLGNTLKVM------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp H----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------------ccCchHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 1 123455677888888877665 3578899999999888 44556677777777
Q ss_pred HHHHHHhhh---ccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1722 NTAVMSHYT---LRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1722 n~~~~~~~~---~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
+...-+... ..............|++.|-+++.+................+-.+++..|+.++....+++.+
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 655432000 000011122345667777777666532111111112233444455666676666555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.2 Score=50.27 Aligned_cols=124 Identities=14% Similarity=0.000 Sum_probs=83.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh-------hhhcH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD-------VQLKE 1361 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~-------~~~~~ 1361 (1874)
.+|....+-+.|..|+-+++......+. ++......-.|..+|.++|+++.+...++..-.. .+ .-..+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 4577778889999999999887654321 1112456678899999999999999888754321 10 11223
Q ss_pred HHHHH--------hcCHHHHHHHHHHHHhccCCCchhHHhH--------------hhHhHHHHHhhCHHHHHHHHhh
Q 000196 1362 SWYEK--------LQRWDDALKAYTNKASQASNPHIVLEAT--------------LGRMRCLAALARWEELNNLCKE 1416 (1874)
Q Consensus 1362 ~~~E~--------lg~W~~Al~~y~~~~~~~~~~~~~~~~~--------------~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1874)
..|.+ .|+|++|+..|++.+...++........ ..+-+|+..+|+|+.-....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44677 9999999999999887665542212222 4556788888888766555543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.12 E-value=1.2 Score=51.61 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=98.4
Q ss_pred HHHHHHHhccchhhhhhhccchhccccccc--CCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh--------h---
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNR--MDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL--------D--- 1356 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~--~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--------~--- 1356 (1874)
.++......+.|.+|+.+++.......... ..+........|..+|..+|+.+.+...++.+.... .
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 456666677778888877776553211000 011223456788999999999999988776433210 0
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc-------CCCC
Q 000196 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCKEYW-------TPAE 1422 (1874)
Q Consensus 1357 --~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~-------~~~~ 1422 (1874)
.......|...|+|++|+.+|++.+... .++.........+-.|+..+|+|+.-....+... ....
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1123345889999999999999987542 2222224455677889999999976665554321 1112
Q ss_pred hHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1423 PAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1423 ~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
+ .........+.+...+|+|+.-.++..
T Consensus 192 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 192 P-NVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 222333345677788888887766544
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.08 E-value=1.3 Score=47.97 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=87.5
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 000196 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHS 580 (1874)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~ 580 (1874)
+....++..+..++...||..|+..++++ . . ..++++.+-.....|+.+.||..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~-----------------------~~~~L~~ir~~va~D~~WrVre~ 123 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-----------------------DKEILIFMRDEVSKDNNWRVQEV 123 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-----------------------SHHHHHHHHHTGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C-----------------------cHHHHHHHHHHhCCCCCccHHHH
Confidence 34445666777788889998888766655 2 1 12233333332467888888888
Q ss_pred HHHhccCCCCcchhh--ccHh-hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChH
Q 000196 581 IFSSLYGNRGFDDFL--AQAD-CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 581 ~l~~l~~~~~f~~~L--~~~~-~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
+-.++. +++ ..++ .++.+..-+.|+++.||+.|+..+--.+.. |.. ..-...+..++..+..+ ++.-
T Consensus 124 lA~a~~------~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~--k~dp~~ll~iL~~L~~D-~s~y 193 (240)
T 3l9t_A 124 LAKAFD------EFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF--KENPNEAIRRIADLKED-VSEY 193 (240)
T ss_dssp HHHHHH------HHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT--TTCHHHHHHHHHTTTTC-SCHH
T ss_pred HHHHHH------HHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh--hcCHHHHHHHHHHhcCC-hHHH
Confidence 777664 222 1222 466677778889999999888875332222 211 01123345566666666 6666
Q ss_pred hHHHHHHHHHHHHHhCccccccc
Q 000196 658 CREESAKLLGCLIRNCERLIRPY 680 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py 680 (1874)
+|..-++.|-++.+..|+.+..+
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCHHHHHHH
Confidence 77777888888888777654443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=91.06 E-value=4.1 Score=41.56 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...++. .+.+.+..+......|+ ..+|+..+++.+....
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 3678999999999999999999999998876542 36777788888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
. .+.++..+|...... ...++....|+++++.+|+...+|..++..
T Consensus 79 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 K----------------------YIKGYYRRAASNMAL------GKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 123445555544443 246788999999999999998888666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=91.05 E-value=1.7 Score=42.36 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +......-.+..+|...|+.+.+...++....... .......+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45566666777777777776554321 22234445566666666666666665553321100 01122235
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELN 1411 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~ 1411 (1874)
.+.|+|++|+..|++.+...++. ......+.+++...|+++.-.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHH
Confidence 56666666666666655433221 223344455555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=90.77 E-value=1.4 Score=45.08 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.--
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------NVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 45889999999999999999999999999988763 46777888888888995 689999998876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
... ..---.++.||..+|+ .++.+..|++|++++|+..
T Consensus 101 P~~---------------~~~~~~lg~~~~~lg~-------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KND---------------YTPVFHTGQCQLRLKA-------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSC---------------CHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCHH
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCHH
Confidence 110 1111235666655555 4778899999999998653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=90.68 E-value=7.4 Score=37.46 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~ 1649 (1874)
..|...+....+.|+++.|...+.++....+. .+......+......|+ ..+|+..+++.+.....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcC---HHHHHHHHHHHHHHCCC-
Confidence 46888899999999999999999988765442 35666777888888885 67899988886643110
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000196 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1874)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1874)
...++..+|...... ...++..+.|.++.+..|+...+|..+|.....
T Consensus 68 ---------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----- 115 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----- 115 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----
T ss_pred ---------------------chHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Confidence 022344445444332 346788999999999999999999888876542
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1730 TLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
. .-...|+..|-+++..
T Consensus 116 --~-------~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 116 --Q-------GDYDEAIEYYQKALEL 132 (136)
T ss_dssp --T-------TCHHHHHHHHHHHHHH
T ss_pred --H-------ccHHHHHHHHHHHHcc
Confidence 1 1233567777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.60 E-value=6.6 Score=44.08 Aligned_cols=168 Identities=11% Similarity=-0.038 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+....+.|+++.|...+.++...+|. .+.+....+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 36777888889999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. . +.++..+|.-.... ...++.+..|+++++.+|+....+...+ .+...
T Consensus 108 ~~------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~- 157 (275)
T 1xnf_A 108 PT------------------Y----NYAHLNRGIALYYG------GRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQK- 157 (275)
T ss_dssp TT------------------C----THHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHH-
T ss_pred cc------------------c----cHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHh-
Confidence 10 0 12333444433332 2457889999999999998764333222 22110
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|+..|-+++...+ .. .....+..+.+..++..+....+.+.+..-|
T Consensus 158 -------------~~~~~A~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 158 -------------LDEKQAKEVLKQHFEKSD-----KE--QWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp -------------HCHHHHHHHHHHHHHHSC-----CC--STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred -------------cCHHHHHHHHHHHHhcCC-----cc--hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 122356666666666532 11 1234456666666666556666666665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=90.56 E-value=2.2 Score=42.89 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..-
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------DARYFLGLGACRQSLGL---YEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998887653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
... ....-.++.+|..+|+ .++.+..|+++++++|+....
T Consensus 83 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 INE---------------PRFPFHAAECHLQLGD-------------LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHTCGGG
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCcch
Confidence 110 0111234555555444 467889999999998866443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.50 E-value=1.2 Score=58.65 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|+..+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----------RWRLVWYRAVAELLTGD---YDSATKHFTEVLDTF 497 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998877653 46778888888888995 689999999876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
... ..-...+|.++..+|+|. + +..|++|++++|+...+|+..|......
T Consensus 498 P~~---------------~~~~~~lg~~~~~~g~~~-------------~-~~~~~~al~~~P~~~~a~~~lg~~~~~~- 547 (681)
T 2pzi_A 498 PGE---------------LAPKLALAATAELAGNTD-------------E-HKFYQTVWSTNDGVISAAFGLARARSAE- 547 (681)
T ss_dssp TTC---------------SHHHHHHHHHHHHHTCCC-------------T-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CCC---------------hHHHHHHHHHHHHcCChH-------------H-HHHHHHHHHhCCchHHHHHHHHHHHHHc-
Confidence 110 111234677777777763 4 5789999999999999999999875541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+ -...|+..|-+++.+.
T Consensus 548 ------g-------~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 548 ------G-------DRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ------T-------CHHHHHHHHHTSCTTS
T ss_pred ------C-------CHHHHHHHHHhhcccC
Confidence 1 2247888888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=90.43 E-value=2.1 Score=43.85 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESW 1363 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~ 1363 (1874)
..+|....+.+.|.+|+.+++...... +......-.+..+|..+|+.+.+...+..+... . . ....+..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 356777788888999998887766432 233566677888888899988888777654321 1 0 1122345
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1874)
+.+.|++++|..+|++.+...++... .....+....+.+.|+++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999888765443321 1112344444556666654443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=5.3 Score=45.67 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=122.0
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH---HH---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA---LR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~---l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
.+.+..|...+..=+++.|..+..++..+....+..=.|. +. +++..++...+ .++..-.+..+|-+.++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLRecir 152 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 152 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHHHHHH
Confidence 3568888888888899999999999999988876543332 21 22222333222 23333333344444443
Q ss_pred hC--ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----ccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 672 NC--ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 672 ~~--~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
+- ...+. -.+.+..+...+.. .+-++.+.++.++.++.... .+.+...++.++..+-..|+.. +--
T Consensus 153 ~e~la~~iL--~~~~f~~fF~yv~~-----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYV 224 (341)
T 1upk_A 153 HEPLAKIIL--WSEQFYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYV 224 (341)
T ss_dssp SHHHHHHHH--HSGGGGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHH
T ss_pred hHHHHHHHh--ccHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cch
Confidence 21 00000 00111122233333 36778888899998876533 2456667778888887766544 555
Q ss_pred hHHHHHHHHHHHHhhcc--ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 746 KREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
.|..+++-||.+...-. .++.-|..-|+-|..++++|++. +..++.+|+.++-...|
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 67789999998886532 23566777789999999999765 89999999999876544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.27 E-value=4.9 Score=42.93 Aligned_cols=127 Identities=10% Similarity=-0.060 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc-CC-----CChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR-YH-----GPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~-~~-----~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
....|...+..+.+.|+++.|...+.++....+........ .. ....+.+..+..++..|+ ..+|+..++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 113 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 36778999999999999999999999988775531100000 00 001566777888888885 6899999888
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.... ..+++++.+|.-...+ ...++.+..|+++++++|+...+|..++..
T Consensus 114 al~~~p----------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 114 VLKIDK----------------------NNVKALYKLGVANMYF------GFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHST----------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhCc----------------------ccHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 765311 0123344444444433 235778899999999999999999998877
Q ss_pred HHHH
Q 000196 1722 NTAV 1725 (1874)
Q Consensus 1722 n~~~ 1725 (1874)
...+
T Consensus 166 ~~~~ 169 (198)
T 2fbn_A 166 VNKL 169 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=90.25 E-value=24 Score=40.15 Aligned_cols=202 Identities=10% Similarity=-0.037 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..-+....+.|+++.|...+.+.....+... . . .....+.+..+.+....|+ ..+|+..+++.+.....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-E-F--QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-H-H--HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-h-H--HHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhc
Confidence 56777888888999999999999888776543210 0 0 0001222333444455563 67899988876532111
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh---cccch----HHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC---ATKWG----KAWHSWALF 1721 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~---~~~~~----k~w~~wA~~ 1721 (1874)
..+....+.++..+|.-.... ...++.+..|++|.++ .++.. .+|+..|..
T Consensus 148 ----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 148 ----------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp ----------------SSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 112233577777788777654 4578999999999854 33321 455555555
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHH-HHHHHhcc---cCC
Q 000196 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEV-QIALQKGF---AHV 1796 (1874)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v-~~~~~~~~---~~i 1796 (1874)
+.. .+ -...|+..|-+++.+... .+..+. -.....+=.+++..|+.++. ...+++.+ ...
T Consensus 206 y~~-------~~-------~y~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 206 LYL-------DS-------RYEESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHH-------TT-------CHHHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHH-------Hh-------hHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 442 11 224677777777776421 111222 23345555677788887665 44455443 445
Q ss_pred ChhhHHHHHHHHHHhccC
Q 000196 1797 NINTWLVVLPQIIARIHS 1814 (1874)
Q Consensus 1797 p~~~wl~~ipQLiari~~ 1814 (1874)
....+-..+-++|+|+.|
T Consensus 271 ~~~~~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 271 EMHAYKEALVNKISRLEH 288 (293)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CcHhhHHHHHHHHHHHhh
Confidence 556667777788888744
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.23 E-value=1.6 Score=42.70 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=62.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|..+|+.+.+...++.+... . . ....+..|
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45666677778888888777665422 233456667777888888888777766643221 0 0 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1874)
.+.|+|++|..+|++.+...++. .+....+-+|+..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhc
Confidence 77788888888887776543221 233344444544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=90.18 E-value=6 Score=38.31 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
.+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++..+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~-- 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRN---FQLAEAQFRDLVSRYPT-- 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCC--
Confidence 466788889999999999999999887655310 113677888888889995 68999999987764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
......+++.+|...... ...++....|+++++.+|+...++...+
T Consensus 72 -----------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 72 -----------------HDKAAGGLLKLGLSQYGE------GKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp -----------------STTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 112345566666665544 3468889999999999998876655444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=3.3 Score=42.01 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.-.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------DSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998887653 46777788888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
... ....-.++.+|..+|+ .++....|.++++++|+..
T Consensus 86 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IXE---------------PRFPFHAAECLLQXGE-------------LAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCG
T ss_pred CCC---------------chHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCCC
Confidence 100 0111224444444444 5778899999999988654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=3.5 Score=47.45 Aligned_cols=167 Identities=11% Similarity=-0.011 Sum_probs=113.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+.+.++..+..+...|+++.|...+.+++..+|. .+...+..+..+...|+ ..+|+..++.....-
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------NGEIGLLLAETLIALNR---SEDAEAVLXTIPLQD 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHHHTTC---HHHHHHHHTTSCGGG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------chhHHHHHHHHHHHCCC---HHHHHHHHHhCchhh
Confidence 45688999999999999999999999999887763 47888899999999995 688998887643210
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
. +. .. ..+..+.-+.... ..++.+..|+++++.+|+...+|+.+|......
T Consensus 182 p-------------------~~-~~--~~~~~~~~l~~~~------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~- 232 (287)
T 3qou_A 182 Q-------------------DT-RY--QGLVAQIELLXQA------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV- 232 (287)
T ss_dssp C-------------------SH-HH--HHHHHHHHHHHHH------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred c-------------------ch-HH--HHHHHHHHHHhhc------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-
Confidence 0 00 00 1111111111110 113467889999999999999999999875531
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.-...|+..|.+.+...+ .+ .-+.-.+|..++-..|...+.....++.+
T Consensus 233 -------------g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 -------------GRNEEALELLFGHLRXDL-----TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -------------TCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 133478999999988752 22 13345667777777777666555555443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.01 E-value=7 Score=42.99 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=71.1
Q ss_pred HHhhcccCCCh--HHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chh
Q 000196 115 MRTVFEVKRDR--EILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNV 190 (1874)
Q Consensus 115 L~~~l~~~~d~--~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~-~~~ 190 (1874)
+..++. ++|+ ++...|++++..|+..........++ .-++.+++.|.+ .+...+..|+.+|+-|+.+.+.. ..-
T Consensus 13 lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 13 AVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334454 4455 78888999999888642111222222 257777888865 44567888999999999765431 111
Q ss_pred chHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHH
Q 000196 191 HVAEFVDAIWVALR-DPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 191 ~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~ 223 (1874)
.=...+|.++..|+ .++..+|+.|..||..+..
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 11356788888887 4789999999988887753
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=5.1 Score=51.29 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQQR---HAEAAVLLQQASDAA 87 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999887653 36777888899999995 689999999876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. .+.++..+|...... ...++.+..|+++.+.+|+...+|..+|......-
T Consensus 88 p~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 88 PE----------------------HPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CC----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 10 133445555554443 24578899999999999999999999987765420
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
. -.-...|++.|-+++...
T Consensus 140 ~-----------~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 140 D-----------WRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHT
T ss_pred c-----------cccHHHHHHHHHHHHhcC
Confidence 0 012346788888888775
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=89.82 E-value=2.4 Score=51.23 Aligned_cols=320 Identities=13% Similarity=0.185 Sum_probs=120.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+-+.|++++|.++|.+. +++ .......+++..+|+|+.+..+-+..-.. .++ ..+-+-.+.+..++|+
T Consensus 41 A~l~~g~~~eAIdsfika----~D~----~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~--~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 41 AQLQKGMVKEAIDSYIKA----DDP----SSYMEVVQAANTSGNWEELVKYLQMARKK-ARE--SYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHcCCHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-Ccc--chhHHHHHHHHHHhCC
Confidence 367789999999999753 233 23456777889999999887655432111 000 1112233458888999
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCC
Q 000196 1443 WDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPV 1522 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~ 1522 (1874)
|+.+.++++... ...+.++|..+.. .+.+..|...-.+. +.|.+--..++++. +++++++.
T Consensus 110 l~e~e~f~~~pn---~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a---~n~~~LA~~L~~Lg---~yq~AVea----- 170 (449)
T 1b89_A 110 LAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVHLG---EYQAAVDG----- 170 (449)
T ss_dssp HHHHTTTTTCC------------------------CTTTHHHHHHHT---TCHHHHHHHHHTTT---CHHHHHHH-----
T ss_pred HHHHHHHHcCCc---HHHHHHHHHHHHH-----cCCHHHHHHHHHHh---hhHHHHHHHHHHhc---cHHHHHHH-----
Confidence 999998876321 1233334433211 11111122111111 12232222222222 22222221
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000196 1523 GNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1874)
Q Consensus 1523 ~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1874)
.|.. .+..+|......|...|.|+.|..+-.++.
T Consensus 171 -----------------------------------~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------ 204 (449)
T 1b89_A 171 -----------------------------------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------ 204 (449)
T ss_dssp -----------------------------------HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------
T ss_pred -----------------------------------HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------
Confidence 1111 246788888899999999999955432210
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhH
Q 000196 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWK 1682 (1874)
Q Consensus 1603 ~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~ 1682 (1874)
..|.- +. -...+|.+.|.|
T Consensus 205 --------~~ad~-----------------------l~-----------------------------~lv~~Yek~G~~- 223 (449)
T 1b89_A 205 --------VHADE-----------------------LE-----------------------------ELINYYQDRGYF- 223 (449)
T ss_dssp --------TCHHH-----------------------HH-----------------------------HHHHHHHHTTCH-
T ss_pred --------hCHhh-----------------------HH-----------------------------HHHHHHHHCCCH-
Confidence 01210 00 123446556665
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCC
Q 000196 1683 RALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGV 1762 (1874)
Q Consensus 1683 ~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~ 1762 (1874)
+++++.|+.+..+++.+.-+|..+|....+ | ..+-+...++.|...|.+.+--.-+
T Consensus 224 ------------eEai~lLe~aL~le~ah~~~ftel~il~~k----y--------~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 224 ------------EELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp ------------HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT----T--------CHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh----c--------CHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 567888888888888888888888766443 2 1234555666665444331000000
Q ss_pred cchHHhHHHHHHHHHhcCCcHHHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000196 1763 DDSLQDILRLLTLWFNHGATEEVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1874)
Q Consensus 1763 ~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~-~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~ 1841 (1874)
...+--+-+..|.+.+++......+|.++. ..=....|..+| ..+... .+....+.=....||..+-.-
T Consensus 280 -~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~----~kv~n~-----elyYkai~fyl~~~p~~l~~l 349 (449)
T 1b89_A 280 -EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII----TKVANV-----ELYYRAIQFYLEFKPLLLNDL 349 (449)
T ss_dssp -HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHH----HHCSST-----HHHHHHHHHHHHHCGGGHHHH
T ss_pred -HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHH----hchhHH-----HHHHHHHHHHHhcCHHHHHHH
Confidence 112223446667778887766555665553 223334444443 333332 233333333347888887777
Q ss_pred HHHHhcCCcHHH
Q 000196 1842 LLVACKSISNLR 1853 (1874)
Q Consensus 1842 L~v~~kS~~~~R 1853 (1874)
|+++..--+..|
T Consensus 350 l~~l~~~ld~~r 361 (449)
T 1b89_A 350 LMVLSPRLDHTR 361 (449)
T ss_dssp HHHHGGGCCHHH
T ss_pred HHHHHhccCcHH
Confidence 777755444444
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=89.75 E-value=41 Score=40.44 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=79.9
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v 150 (1874)
.+.+.+|+...|...|..||-+|-.++.- ..+.|.++.|.+++. .+|..-+...-++|-.|.... +..-+
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLq-tdd~~E~~~V~~sL~sllk~D---pk~tl 136 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQ-TDDSAEFNLVNNALLSIFKMD---AKGTL 136 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcC---hHHHH
Confidence 45567889999999888888877777633 247899999999997 568888888888888877641 12222
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHH-HHHHHhhcCC
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFV-DAIWVALRDP 206 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~~~l~~il-~~i~~~l~D~ 206 (1874)
..++..+.. +.+..|.-.+.+|+.-....| ..+...+..++ ..|-..|.|-
T Consensus 137 ~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 137 GGLFSQILQ-----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHH-----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcc-----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 333333333 346788888888776555544 35555555544 4455666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.74 E-value=1.9 Score=42.13 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|+..+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.--.
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----------REEAWRSLGLTQAENEK---DGLAIIALNHARMLDP 82 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999887663 46777888888888885 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1874)
. ...-...++.+|...|+| ++.+..|+++++.+|++.+
T Consensus 83 ~---------------~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 K---------------DIAVHAALAVSHTNEHNA-------------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHC-------
T ss_pred C---------------CHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCcCCCC
Confidence 0 011123466777777765 5677899999999887643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=89.69 E-value=2.7 Score=47.41 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=74.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1874)
.+|.+....+.|..|+.+++......... ...+........|..+|..+|+.+.+...+..+... ..
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 44555566666777776666544321000 001112345667888999999999888777643321 00
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1357 --~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
....+..|...|+|++|+.+|++.+... ++..........+-+|+..+|+|+.-....+
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1122335788899999999998877531 1122223455677788888898876554443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.67 E-value=11 Score=44.96 Aligned_cols=159 Identities=11% Similarity=-0.014 Sum_probs=93.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc------h-hh----hh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK------E-LD----VQ 1358 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~-~~----~~ 1358 (1874)
.+|.+...-|.|.+|+.+.+....-.+............-.|..+|..+|+.+.|.-.++.+-. . .. ..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 4566666777788888887766532211100011123556789999999999998887764332 1 10 11
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC---HHHHHHHHhhhcCCCChHHHHhHHHH
Q 000196 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR---WEELNNLCKEYWTPAEPAARLEMAPM 1432 (1874)
Q Consensus 1359 ~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~---w~~l~~~~~~~~~~~~~~~~~~~~~~ 1432 (1874)
..+..|.++|++++|+.+|++.+... .++.. ......+-.++...|+ ++......+.. ............
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 23445889999999999999987532 12211 1112334455667777 44444444432 122333444556
Q ss_pred HHHHHHHcCChhhHHHHHhh
Q 000196 1433 AANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
.+...+.+|+++.-.+|...
T Consensus 345 la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 67888889999887766553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=89.31 E-value=2 Score=44.45 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=68.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++....+.+.|.+|+.+++..+... +......-.+..+|..+|+.+.+.-.++.+... .+ ....+..|
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667777788888888777666432 334566677888888888888877766643221 00 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.++|+|++|+.+|++.+...++... .-...++.+|...+++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIEE 130 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHH
Confidence 7888888888888887765443321 1134555666555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.01 E-value=2.1 Score=41.79 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=53.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.+|....+.+.|..|+.+++..+... ++.....-.+..+|..+|+.+.+.-.++.+-.. .+ .-..+..+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45777778888888888887766432 233455666777777777777666655543211 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
.++|+|++|+..|++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6777777777777766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.96 E-value=6.7 Score=45.05 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
....|...+.+.++.|+++.|...+.++..+.+.... . ..........+.++..+ |+ ..+|+..+++.+.-.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~--~~~a~~~~~lg~~~~~~lg~---~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--F--RRGANFKFELGEILENDLHD---YAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHH
Confidence 3678889999999999999999998888765432110 0 00123344555666665 74 689999998866532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH-------HHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK-------AWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k-------~w~~wA 1719 (1874)
.. .......+.++..+|.-...+ ...++.+..|+++++..|+... +|...|
T Consensus 149 ~~----------------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 149 AQ----------------DQSVALSNKCFIKCADLKALD------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred Hh----------------CCChHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 21 112234577888888888765 4589999999999999886543 344444
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChh
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNIN 1799 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~ 1799 (1874)
..... . .-...|+..|-+++.+.+.... ......+..+.. .++.++..+..+++...-.-+...
T Consensus 207 ~~~~~-------~-------g~~~~A~~~~~~al~l~p~~~~-~~~~~~l~~l~~-~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 207 LCQLA-------A-------TDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLID-AVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHH-------T-------TCHHHHHHHHHGGGCC----------HHHHHHHHH-HHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHH-------c-------CCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHhccCCccH
Confidence 33221 1 1245788899888887532110 111111222333 445555555666666553334444
Q ss_pred hHH
Q 000196 1800 TWL 1802 (1874)
Q Consensus 1800 ~wl 1802 (1874)
.|.
T Consensus 271 ~~~ 273 (292)
T 1qqe_A 271 KWK 273 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=88.92 E-value=15 Score=40.11 Aligned_cols=191 Identities=10% Similarity=-0.021 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+....+.|+++.|...+.++....|... ..+...+..+...+..|+ ..+|+..++.+++....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCcC
Confidence 45678888999999999999999999887655311 124677888889999995 68999999998864321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH-
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN- 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n- 1722 (1874)
.... ..---.++.++..+|. |.............++.+..|+++++.+|+...+|.......
T Consensus 74 ~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 74 HPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp CTTH------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred CCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 1000 0001224444444331 100000001123578899999999999999877765332211
Q ss_pred --HH-------HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1723 --TA-------VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1723 --~~-------~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
.. +-..+.. ..-...|+..|-+.+...+ +....-+...++-.+++..|...+..+.++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTE-------RGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11 0011111 1123578888888887642 1122335677888888888887766555543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=88.62 E-value=13 Score=41.58 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+.+....|+++.|...+.++..........+. ...+.+....+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIR 115 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 34788999999999999999999999887754210000000 0124556677888888885 688999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh--------cccchHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC--------ATKWGKAWHSW 1718 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~--------~~~~~k~w~~w 1718 (1874)
... ...+....+.++..+|...... ...++....|+++.+. ++....+|..+
T Consensus 116 ~~~--------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 EKV--------------LGKFHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp HHH--------------HCTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHH--------------cCCCChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 210 0011234567777777776554 3578899999999988 66677788888
Q ss_pred HHHHHH
Q 000196 1719 ALFNTA 1724 (1874)
Q Consensus 1719 A~~n~~ 1724 (1874)
|..+..
T Consensus 176 a~~~~~ 181 (283)
T 3edt_B 176 ASCYLK 181 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=88.56 E-value=13 Score=43.96 Aligned_cols=248 Identities=13% Similarity=0.138 Sum_probs=127.6
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000196 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1874)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1874)
..+....+|+++ ++.++.+++.|+|+++|..--..+-.+.+...+ ..+.+++- .+.+-+.+-......-+..--+++
T Consensus 117 f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeil 195 (403)
T 3fga_B 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 195 (403)
T ss_dssp CCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred cChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 344445566544 566788999999999998544444333322111 11223222 222222221111222233456677
Q ss_pred HHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 136 GHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 136 g~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
|.+... .-.+..++..++.+.+++.-....-......-..++.+..+.-|++..+.+..++ ..|..-..++. |
T Consensus 196 gsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Ke-v---- 269 (403)
T 3fga_B 196 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKE-V---- 269 (403)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSSCHHHH-H----
T ss_pred HHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHH-HhCCCCCcHHH-H----
Confidence 877764 2234567777777777766554333333333334455566666766555544444 23333222221 1
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHH----HHHH-
Q 000196 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEI----VLRY- 289 (1874)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~----ll~~- 289 (1874)
.-|+.+.+++..-++..-......++..+...+.++. -.+...|+...+.= .--..+.++...+++. +.+.
T Consensus 270 -lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~h-fqVAErAL~~wnNe--~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 270 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHhccH--HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1234333333333333334556677777777887764 45566665543100 0001222233333333 3332
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 290 LEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 290 ~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
.+|=++.||..+.+++..+.+.++.-|
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 345689999999999999888777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=88.46 E-value=4.9 Score=47.40 Aligned_cols=127 Identities=12% Similarity=-0.036 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc-----CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR-----YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
....|...+....+.|+++.|...+.++..+.|........ ......+.+..+.++...|+ ..+|+..++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 46788999999999999999999999998876642100000 00003566777788888885 68999999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|+...+|..+|...
T Consensus 223 l~~~p----------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 223 LELDS----------------------NNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCC----------------------CcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 65311 0134455566555544 2468899999999999999999999998876
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
...
T Consensus 275 ~~~ 277 (336)
T 1p5q_A 275 QRI 277 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.20 E-value=3.9 Score=49.12 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=99.6
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h--hh------h
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L--DV------Q 1358 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~--~~------~ 1358 (1874)
.|......|.|..|+.+.+....-..............-.|..+|..+|+++.+...+..+-.. . .. .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4667778889999998887665322111000111234567899999999999988777643221 1 11 1
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC----CCChHHHHhHHH
Q 000196 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT----PAEPAARLEMAP 1431 (1874)
Q Consensus 1359 ~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~----~~~~~~~~~~~~ 1431 (1874)
..+..|..+|+|++|++.|++.+... .++.........+-.|+..+|+++.-..+.+.... ..++.. .....
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 23445889999999999999987532 12211123345667788899999766655543221 012222 33334
Q ss_pred HHHHHHHHcCChhhHHHHHhh
Q 000196 1432 MAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
..+.+.+++|+++.-.++...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 556788889999887766553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=88.15 E-value=9.8 Score=38.92 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHH
Q 000196 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPE 1696 (1874)
Q Consensus 1617 ~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~ 1696 (1874)
+.....+...|+ ..+|+...++.+.-....+.. .........+.+|.-+|.=...+ ...++
T Consensus 15 ~~~G~~l~~~g~---~eeAi~~Y~kAL~l~p~~~~~----------~a~~~~~~~a~a~~n~g~al~~L------gr~~e 75 (159)
T 2hr2_A 15 LSDAQRQLVAGE---YDEAAANCRRAMEISHTMPPE----------EAFDHAGFDAFCHAGLAEALAGL------RSFDE 75 (159)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCTT----------SCCCHHHHHHHHHHHHHHHHHHT------TCHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCcch----------hhhhhccchHHHHHHHHHHHHHC------CCHHH
Confidence 455566667774 688999888876533221100 00011122344565566555544 24678
Q ss_pred HHHHHHHHHhh-------cccchHHH----HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch
Q 000196 1697 IIAAYRNATQC-------ATKWGKAW----HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS 1765 (1874)
Q Consensus 1697 i~~~y~~a~~~-------~~~~~k~w----~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~ 1765 (1874)
.+..|.+|+++ +|++.++| +..|.....+ .-...|+.+|-++|.+.+...|...-
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--------------gr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--------------GRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--------------CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 88889999988 99999999 8888665432 13348999999999998766665555
Q ss_pred HHhHHHHH
Q 000196 1766 LQDILRLL 1773 (1874)
Q Consensus 1766 ~q~~~RlL 1773 (1874)
++.+-+.+
T Consensus 142 ~~~~~~~~ 149 (159)
T 2hr2_A 142 KERMMEVA 149 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=88.07 E-value=25 Score=42.54 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.5
Q ss_pred CchhHHHHHHhhccc-ccC--CCcchh--hHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 478 GSAPVQLALQTLARF-NFK--GHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~-~f~--~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
|+...+.||.=+|+| .+. |....+ -.++.+..++.|++++||..|-.++.+++..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 455778999999998 332 221111 1346678899999999999999988887753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=87.86 E-value=2.6 Score=40.85 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-h-----------h
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-D-----------V 1357 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-~-----------~ 1357 (1874)
.+|....+.+.|.+|+.+++...... +........+..+|...|+.+.+.-.+....... . .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777778888888988887766432 2334566778888888888888877666432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1358 ~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
...+..|.+.|+|++|..+|++.+...+++ +....+-+|...+++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP----DVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 122335788888888888888877654432 333444455554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=87.63 E-value=14 Score=40.27 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000196 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~ 1691 (1874)
++...+..+..+...|+ ..+|+..++.++..... ......+++.+|......
T Consensus 3 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~lg~~~~~~------ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN---WRQAITQLEALDNRYPF-------------------GPYSQQVQLDLIYAYYKN------ 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-------------------STTHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHHHhc------
Confidence 46778888999999995 78999999998864321 112233444444444433
Q ss_pred CCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHH----hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1692 ESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMS----HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~----~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|.++++.+|+... +|+.+|....+.-. .+...........-...|+..|-+.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 2357788999999999998765 78888877654210 00000000111235568899998888764
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=87.47 E-value=45 Score=38.13 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 170 RFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 170 r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
|..-+.++....+.+++ .....++.+++.++.--++..|..|++- ...+..+..-+.+.-....+..+..+++.+.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL 125 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 125 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555566666666655 3456778888887777666667777653 3333334444443334466778888888888
Q ss_pred hhccCC--CChhHHHHHHHHHHHHHHcchhh-h---HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh----Hhhh--Ch
Q 000196 246 DGLGRN--APVHSIHGSLLAVGELLRNTGEF-M---MSRYREVAEIVLRYLEHRDRLVRLSITSLLPR----IAHF--LR 313 (1874)
Q Consensus 246 ~~l~~~--~~~~~~~~al~~l~~ll~~~~~~-~---~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~----la~~--~~ 313 (1874)
+-++++ +-+|.|.+--..|.++..++-.. + .+.+..+++.++-..+|.++.|....+.++-. ++.. ..
T Consensus 126 ~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~ 205 (321)
T 1w9c_A 126 NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAA 205 (321)
T ss_dssp HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 877653 23788998888999988855432 2 25778889999999999999999887655544 3321 12
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC
Q 000196 314 DRFVTNYLKICMNHILTVLRIPAE 337 (1874)
Q Consensus 314 ~~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1874)
..|.+.|+-.++..++.++.+...
T Consensus 206 ~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 206 QSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchh
Confidence 346667778888888888876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=87.33 E-value=26 Score=44.03 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+....|+.++.+..+.|+++.|.....++...+|. .+..+.+.++.++...| +..+|...++..+...
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~---~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---------DPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---------CchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999998876442 11246677777777777 3577888777654311
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
. .......+.++. +|.. ....++..+.|..+++.+|+....|..+|.+..+
T Consensus 387 ~-----------------~~~~~~~~~a~~---~~~~-------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-- 437 (530)
T 2ooe_A 387 R-----------------TRHHVYVTAALM---EYYC-------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-- 437 (530)
T ss_dssp T-----------------CCTHHHHHHHHH---HHHH-------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred C-----------------CchHHHHHHHHH---HHHH-------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--
Confidence 0 001111222211 1211 1357889999999999999999999999877321
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
. .-...|...|-+++...+. .+.....-..+.+..-.++|+.+.+.....+.....|
T Consensus 438 -----~-------g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 -----L-------NEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----T-------TCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----C-------CCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 1234677888888875311 0111111223344455667888777766666655554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=87.24 E-value=4.6 Score=52.86 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=83.8
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1874)
+++-|++ .+...|..|+.+|+.|+++... .+.-+-..|.+.|-..|.|++..||.+|+.||+.+...- +.....+
T Consensus 39 ll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADFCVH 114 (684)
T ss_dssp HHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHHHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchHHHH
Confidence 4445554 4557899999999999975332 222233334445556789999999999999999875321 1111111
Q ss_pred -----HHH---HHHHHHHhhccCC------CC-------hhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhc-
Q 000196 236 -----WYY---RMFEATQDGLGRN------AP-------VHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEH- 292 (1874)
Q Consensus 236 -----~~~---~i~~~~~~~l~~~------~~-------~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~- 292 (1874)
.+. .++......+... .. ++.....+.+|..|.+.+.+.+..-. ...+..++..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 111 1222221111110 00 12233455566666665544332211 1233444444422
Q ss_pred --chhHHHHHHHHHhHhHhhhCh
Q 000196 293 --RDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 293 --~~~~vr~~~~~~i~~la~~~~ 313 (1874)
....++.++..+|-.++..++
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCcHHHHHHHHHHHHHHhccCH
Confidence 346799999999998887655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=5.1 Score=51.27 Aligned_cols=151 Identities=10% Similarity=0.002 Sum_probs=90.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000196 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1874)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~ 1661 (1874)
+|+++.|...+.++...+|. .+...+..+..++..|+ ..+|+..+++.+....
T Consensus 2 ~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p-------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ----------DFVAWLMLADAELGMGD---TTAGEMAVQRGLALHP-------------- 54 (568)
T ss_dssp -------------------C----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTST--------------
T ss_pred CccHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------------
Confidence 46778888888777765542 46778888999999995 6899999888664210
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000196 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1874)
Q Consensus 1662 ~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1874)
..+.++..+|.-.... ...++....|++|++.+|+...+|+.+|..+.+. + -
T Consensus 55 --------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------g-------~ 106 (568)
T 2vsy_A 55 --------GHPEAVARLGRVRWTQ------QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------G-------Q 106 (568)
T ss_dssp --------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------T-------C
T ss_pred --------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------C-------C
Confidence 0133455555554443 3467889999999999999999999998775541 1 2
Q ss_pred HHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc---CCcHHHHHHHHhcc
Q 000196 1742 VVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH---GATEEVQIALQKGF 1793 (1874)
Q Consensus 1742 ~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~---g~~~~v~~~~~~~~ 1793 (1874)
...|++.|-+++.+.+ ........+-.+.... |+.++..+.+++.+
T Consensus 107 ~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3478888999888752 2344556666677777 77766666555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=87.09 E-value=5 Score=43.16 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.+|....+.+.|..|+.+++.... + .....-.+..+|..+|+.+.+...+..+... . .....+..|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~--------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD--------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 456777788888889888776541 1 2456677888888888888887777643321 0 011233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCc-------------hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPH-------------IVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~-------------~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.|+|++|+..|++.+...++.. ...+....+-.|+..+|+|+.-....+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788888888888888776433211 012344555566666676655544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.07 E-value=6.4 Score=51.64 Aligned_cols=157 Identities=10% Similarity=-0.068 Sum_probs=108.2
Q ss_pred HhcCChhHHHHHHHHHh--------cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000196 1580 RKSGRISQARSTLVKLL--------QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1874)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~--------~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~ 1651 (1874)
-..|+++.|...+.++. ..+| ..+...+..+..+...|+ ..+|+..++..+..-..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~--- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS----------ESVELPLMEVRALLDLGD---VAKATRKLDDLAERVGW--- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT----------TCSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHCC---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc----------cchhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCcc---
Confidence 67899999999998887 4333 245778888999999995 68999999987753211
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc
Q 000196 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL 1731 (1874)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~ 1731 (1874)
.++++..+|.-.... ...++.+..|++|++++|+...+|+..|..+.+.
T Consensus 466 -------------------~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------ 514 (681)
T 2pzi_A 466 -------------------RWRLVWYRAVAELLT------GDYDSATKHFTEVLDTFPGELAPKLALAATAELA------ 514 (681)
T ss_dssp -------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------
Confidence 123344444444333 2357889999999999999999999999886542
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1732 RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1732 ~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
++.+ . ++.|-+++.+. + ........+=.+++..|..++....+++.+..=|-
T Consensus 515 -g~~~-------~-~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 515 -GNTD-------E-HKFYQTVWSTN-----D-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp -TCCC-------T-TCHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred -CChH-------H-HHHHHHHHHhC-----C-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 1111 2 44556666664 2 23445566777788889888877778877765553
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=49 Score=37.90 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=108.7
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcc--hHHHHHHHHHHHhhh-cCCCcchhHHHHHHHHHHHHhhcC--
Q 000196 112 SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWL-RGDRVEYRRFAAVLILKEMAENAS-- 185 (1874)
Q Consensus 112 ~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~--~~~v~~~~~~~~~~l-~~~~~~~~r~aA~~~l~~la~~~p-- 185 (1874)
...|...++ .-|.+.++-++.++..+... .|+.. .+++... +.++.+| .+.....--.-+=.+|++.+.+-+
T Consensus 80 l~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 334555565 34789999999999988875 23322 2344432 2233332 221111111222234555554411
Q ss_pred c-cch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000196 186 T-VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1874)
Q Consensus 186 ~-~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~ 263 (1874)
. .++ +++-.++ .-+..|+-.|-..|...++.++.--..-....-...|..++.....-+.++ ...++.-|+..
T Consensus 158 ~~iL~~~~f~~fF----~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKL 232 (341)
T 1upk_A 158 KIILWSEQFYDFF----RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKL 232 (341)
T ss_dssp HHHHHSGGGGHHH----HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHHhccHHHHHHH----HHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHH
Confidence 1 221 2333333 456678888844444444444331110001122233455666555544454 48899999999
Q ss_pred HHHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 264 VGELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 264 l~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
||+++-. ....|..|+.+ -+..++.++++++..||-.+.++.....+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999883 44567776653 45577788899999999999999987664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.73 E-value=18 Score=41.32 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...+-+-+.+.+..|+++.|..+..++..+.+..... ..........+.++...|+ ..+|+..+++.+.-...
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 4556666788899999999999988877653211000 0013445566677778885 68899999886643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|.-.... ....++.+.+|++|+++.|+. ..+|..+|.+.
T Consensus 110 ----------------~g~~~~~a~~~~~lg~~~~~~-----lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 122334577788888777652 035799999999999998754 34555556554
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.+ .+ -...|+..|-+++..........+. .....++-.+++..|+..+....+++.+.--|.
T Consensus 169 ~~-------~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 169 AL-------DG-------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HH-------hC-------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 32 11 2347899999999875311000111 123566777788889988888888888775554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=3.7 Score=41.68 Aligned_cols=86 Identities=8% Similarity=-0.075 Sum_probs=41.1
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~E~ 1366 (1874)
+....+.|.|..|+.+++..... +++.......|..+|..+|+++.+.-.++.+... . . .-..+..|..
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVL------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44445555566666555544322 1223344455556666666666555555432210 0 0 0112223555
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000196 1367 LQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1874)
+|++++|+.+|++.+..
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=86.57 E-value=4.9 Score=38.30 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=47.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.++....+.+.|.+|+.+++...... +........+..+|...|+.+.+...++..... . . .......|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555566666777776666554321 222345556666666667666666655533211 0 0 11123345
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
.+.|+|++|...|++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666777777776666544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.07 E-value=3.4 Score=43.19 Aligned_cols=165 Identities=14% Similarity=0.030 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+..-.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQS----------RGDVKLAKADCLLETKQ---FELAQELLATIPLEYQ- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT----------SHHHHHHHHHHHHHTTC---HHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHHCCC---HHHHHHHHHHhhhccC-
Confidence 345788899999999999999999887766542 46788889999999995 6889988776432100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
+ .....+.+.+.+ .+.. . . .+.+..|+++++.+|+...+|+.+|......
T Consensus 72 ~---------------~~~~~~~~~~~~-~~~~----~-----~--~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--- 121 (176)
T 2r5s_A 72 D---------------NSYKSLIAKLEL-HQQA----A-----E--SPELKRLEQELAANPDNFELACELAVQYNQV--- 121 (176)
T ss_dssp C---------------HHHHHHHHHHHH-HHHH----T-----S--CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---
T ss_pred C---------------hHHHHHHHHHHH-Hhhc----c-----c--chHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 0 000111121111 1111 0 1 1347889999999999999999999875541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.-...|+..|-+++...+ .+ .......+-.++...|...+....+++.+
T Consensus 122 -----------g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 122 -----------GRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp -----------TCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 123478888888887742 22 12234455667777788777666666554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=86.06 E-value=1.5 Score=57.49 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHhhCCCChHhHHHHHHHHHHHHHhCccccccch-HHHHHHHH-HHhhccCCCCCChhHHHHHHHHHHHHHHhcccch
Q 000196 646 LTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI-APIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGM 723 (1874)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~ 723 (1874)
+..|+ + .+++.|..||.+|+.+++... .-+-.. ..++..++ +.+.|+ +..|+.+++.+++.|+...|.++
T Consensus 40 l~~L~-S-~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~-----~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 40 LKDLK-S-PDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDN-----NIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHHS-S-SCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCS-----CHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcC-C-CCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhcCchH
Confidence 33444 3 578899999999999986321 111111 13444433 345553 88899999999999998888766
Q ss_pred hhcH--HhHHHHHHHHHhcC-------------cch-------hhHHHHHHHHHHHHhhccccc---cccccchHHHHHH
Q 000196 724 RQYI--SELMPLIVEALLDG-------------AAV-------TKREVAVSTLGQVVQSTGYVI---TPYNEYPQLLGLL 778 (1874)
Q Consensus 724 ~~~~--~~llp~l~~~l~d~-------------~~~-------~~r~~A~~~Lg~l~~~~~~~i---~p~~~~p~ll~~L 778 (1874)
..++ ..++|.+...+... ... ..-++++..|..++++....+ .-....|.++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 5543 23666666655321 000 112356777778877665432 1112234444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 779 LKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 779 l~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
... +....+++.+++.||..+.
T Consensus 192 ~~~--~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 192 ISA--DIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHH--CCSCHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHHh
Confidence 332 2235789999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=86.05 E-value=5.6 Score=42.99 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=84.2
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHH----------------HHHHHhhcCChHHHhHHHHHHhc-
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEA----------------LIHINNQLHQHEAAVGILTYAQK- 1353 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~----------------L~~iy~~L~~~D~~~Gi~~~~~~- 1353 (1874)
.|....+-|.|..|+.+++......+ +.....-. |..+|..+|+.|.+...++.+-.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35566677888888888877664321 12233334 88999999999999888775432
Q ss_pred hh---h-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh--CHHHHHHHHhhhcCCCChHHHH
Q 000196 1354 EL---D-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA--RWEELNNLCKEYWTPAEPAARL 1427 (1874)
Q Consensus 1354 ~~---~-~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg--~w~~l~~~~~~~~~~~~~~~~~ 1427 (1874)
.. . ....+..|...|+|++|+.+|++.+...++. .+....+-.++...| ++.......+..... .+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 157 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKMQ-- 157 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cchh--
Confidence 11 1 1223445889999999999999998765543 233444444544444 344444333332221 1111
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1428 EMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1428 ~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
........+...+|+++.-..+.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Confidence 001112334455667766555544
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=85.48 E-value=0.64 Score=51.79 Aligned_cols=64 Identities=30% Similarity=0.379 Sum_probs=43.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
...|+++.||..+...+.. +.|..+++|+++.||..+...++ ...+..
T Consensus 178 ll~D~d~~VR~aaa~~l~~--------------~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~ 225 (244)
T 1lrv_A 178 MTQDPEPEVRRIVASRLRG--------------DDLLELLHDPDWTVRLAAVEHAS------------------LEALRE 225 (244)
T ss_dssp STTCSSHHHHHHHHHHCCG--------------GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHH
T ss_pred HHcCCCHHHHHHHHHhCCH--------------HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHH
Confidence 4678999999998887631 12345578999999998888754 023444
Q ss_pred HhhCCCChHhHHHHHHHH
Q 000196 649 LEQSSADNKCREESAKLL 666 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1874)
| .+ .++.+|+.+...|
T Consensus 226 L-~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 226 L-DE-PDPEVRLAIAGRL 241 (244)
T ss_dssp C-CC-CCHHHHHHHHCCC
T ss_pred c-cC-CCHHHHHHHHHHh
Confidence 6 45 6788887776544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=85.45 E-value=7.6 Score=39.55 Aligned_cols=101 Identities=10% Similarity=-0.071 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~ 1750 (1874)
.+..++.+|.-..+. ...++.+..|+++++++|+...+|+.+|...... .-...|+..|-
T Consensus 35 ~~~~~~~lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------------g~~~~Ai~~~~ 94 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNK------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------------EQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------ccHHHHHHHHH
Confidence 345566666655443 3578999999999999999999999999876541 12348999999
Q ss_pred HHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1751 HSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1751 ~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+++.+.+ ........+=..++..|..++-...+++.+..-|
T Consensus 95 ~al~l~P------~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 95 VAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHSS------SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhCC------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999863 2334556777778888998887777777765433
|
| >2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 | Back alignment and structure |
|---|
Probab=85.43 E-value=8.8 Score=41.93 Aligned_cols=131 Identities=11% Similarity=-0.027 Sum_probs=88.4
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
..+.+|.+++.-.+|+.|+..++..-.... .....++...++..+.=.+.+..|.++|.+.... ++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~----~~--- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH----LT--- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS----GG---
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC----hH---
Confidence 344577888777888888888876642211 1233445556654455678887778888876531 11
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
...+.+.+|+.++..+.+|.|.+..+ +-.-..+...+++.+-..+.|++.-||.|.+.+|+.+..
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~l-------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQL-------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 12345778999888888888866443 222235566777777778999999999999999998753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=85.33 E-value=3.4 Score=41.37 Aligned_cols=86 Identities=12% Similarity=-0.024 Sum_probs=46.8
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~E~ 1366 (1874)
+....+.+.|..|+.+++...... ++.....-.|..+|..+|+++.+...++.+... . . .-..+..|.+
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445556666777776666554321 233455556666677777776666655543210 0 0 1112334566
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000196 1367 LQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1874)
+|+|++|+.+|++.+..
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 67777777777666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.57 E-value=5 Score=42.80 Aligned_cols=114 Identities=12% Similarity=-0.026 Sum_probs=58.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc-----------HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h--
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP-----------VAVVEALIHINNQLHQHEAAVGILTYAQKE-L-- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~-----------~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~-- 1355 (1874)
.+|....+.+.|..|+.+.+......+... +... ......+..+|..+|+.+.+.-.+..+... .
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 457777888889999988876654321110 0000 134445566666666666665554432210 0
Q ss_pred --hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCH
Q 000196 1356 --DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARW 1407 (1874)
Q Consensus 1356 --~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w 1407 (1874)
..-..+..|.++|+|++|+..|++.+...++. .+....+-+|+..+|+.
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHHHH
Confidence 01112334566666666666666665443322 23334445555555544
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=84.16 E-value=72 Score=43.76 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHHhhh----CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000196 123 RDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~ 198 (1874)
.++.+++.|.-++|.|+.. .+.-..+.++...+.+.+.+.. .++..+..++.+|+-+.. |.. ++.+.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p~~----l~~l~~- 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--PNS----IKKIQR- 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--GGG----HHHHHT-
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--hhH----HHHHHH-
Confidence 3566778888899988874 1223445666666666666643 345566667777666553 322 111111
Q ss_pred HHHhh----cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh
Q 000196 199 IWVAL----RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274 (1874)
Q Consensus 199 i~~~l----~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~ 274 (1874)
++.+. .+...+||.+|..||+.+.. .++. .....+++...+ ...+.++|.+|+.+| +++.+..
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~---~v~~il~~i~~n---~~e~~EvRiaA~~~L---m~t~P~~ 545 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESKPSV 545 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTCCCH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhh----hchH---HHHHHHHHHhcC---CCCChHHHHHHHHHH---HHHCcCH
Confidence 11122 12346799999999886532 1111 122223332222 122468888877665 4432211
Q ss_pred hHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhh
Q 000196 275 MMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 275 ~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
. ++..+...+ .+++..|+..+...|-.++......
T Consensus 546 --~----~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 546 --A----LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp --H----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred --H----HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 1 222222223 4588999999999999999866443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=84.09 E-value=6.9 Score=48.44 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc---ccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSH---ENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~---~~~--~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
....|...+..+.+.|+++.|.....++..+++.... +.. .......+.+..+.++...|+ ..+|+..++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3678899999999999999999999998876553100 000 000003556667777788884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+.... -.+++++.+|.-...+ ...++.+..|++|++++|++..+|..++...
T Consensus 344 l~~~p----------------------~~~~a~~~~g~a~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 344 LGLDS----------------------ANEKGLYRRGEAQLLM------NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HhcCC----------------------ccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 65311 0134455555555443 2457889999999999999999999888776
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
..+
T Consensus 396 ~~~ 398 (457)
T 1kt0_A 396 KKA 398 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=83.85 E-value=15 Score=38.75 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc------hh-----hhhhcHHHHHHhcCHHHHHHHHHHHHhc---cC-CCch
Q 000196 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK------EL-----DVQLKESWYEKLQRWDDALKAYTNKASQ---AS-NPHI 1389 (1874)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~~-----~~~~~~~~~E~lg~W~~Al~~y~~~~~~---~~-~~~~ 1389 (1874)
......+..+|...|+++.+.-.++.+.. .. ........|...|+|++|+..|++.+.. .+ ++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34556677777777777777665553321 00 0112233578889999999999887653 22 1111
Q ss_pred hHHhHhhHhHHHHHhhCHHHHHHHHhhhc----CCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1390 VLEATLGRMRCLAALARWEELNNLCKEYW----TPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1390 ~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~----~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
.......+-.++..+|+|+.-....+... ...++..........+.+.+.+|+|+.-..+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 12334566677888889876655544321 011222222223455678888888887766544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=83.84 E-value=5.5 Score=47.71 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccc---cccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHE---NVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~---~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
...|...+..+.+.|+++.|...+.++..+.+.. ..+ ... ...+.+.+..+.++...|+ ..+|+..+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~---~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSD---WQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccC---HHHHHHHHHH
Confidence 5678999999999999999999988887631110 000 000 0124566677777778884 6889998887
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.. . .-.+++++.+|.-...+ ...++.+..|++|.+++|+...+|..++..
T Consensus 299 al~~-~---------------------p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 299 ALEI-D---------------------PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHTT-C---------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHh-C---------------------chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6531 1 01245566666666554 346889999999999999999999988877
Q ss_pred HHHH
Q 000196 1722 NTAV 1725 (1874)
Q Consensus 1722 n~~~ 1725 (1874)
...+
T Consensus 351 ~~~~ 354 (370)
T 1ihg_A 351 KQKI 354 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=83.66 E-value=4.8 Score=40.53 Aligned_cols=60 Identities=18% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILT 1349 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~ 1349 (1874)
.++......+.|..|+.+.+......+............-.+..+|..+|+.+.+...++
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666777777776665443211000000001123345555555555555554443
|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=83.08 E-value=41 Score=40.48 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=126.2
Q ss_pred HHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000196 64 SRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1874)
Q Consensus 64 ~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~ 141 (1874)
.+|++. ++.++.+++.|+|+++|..--..+-.+.+...+ ....+++- .+.+.+.+-......-+...-+.+|.+...
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 444433 566777889999999998544444444332212 22223322 232222221122223334566678877664
Q ss_pred -CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 142 -GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 142 -~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
.-.+..++..++...+++......-......=..++.++.+..|++..+.+..++ ..|..-..++. | .-|+.
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Ke-v-----lFL~e 307 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKE-V-----MFLNE 307 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSSCHHHH-H-----HHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCCCchHH-H-----HHHHH
Confidence 1234567777777766766553333333322334445556666666554444443 23332221121 1 23444
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchh
Q 000196 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDR 295 (1874)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~ 295 (1874)
+.+++..-++..-......++..+...+.++. -.+...|+...+.= .--..+..+-..++..++..+ +|=++
T Consensus 308 leeile~~~~~ef~~i~~~lF~~la~ci~S~h-fqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 44444333333444566778888888887764 45566665443100 000122223334445554433 45589
Q ss_pred HHHHHHHHHhHhHhhhChhhHH
Q 000196 296 LVRLSITSLLPRIAHFLRDRFV 317 (1874)
Q Consensus 296 ~vr~~~~~~i~~la~~~~~~f~ 317 (1874)
.||..+..++..+...++.-|-
T Consensus 385 ~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 385 TIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp THHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHH
Confidence 9999999999999888887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=82.69 E-value=13 Score=42.82 Aligned_cols=184 Identities=7% Similarity=0.017 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...+-+.+.+.+..|+++.|..++.++..+.+..... ..........+.+....|+ ..+|+..+++.+.-...
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL----FHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999988876553211000 0012233444566666775 46788888876643221
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|.-... ...++.+.+|++|+++.+.. ..+|..+|.+.
T Consensus 109 ----------------~g~~~~~a~~~~~lg~~~~~-------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 109 ----------------NGTPDTAAMALDRAGKLMEP-------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 12234467788888876643 35899999999999988754 34555555553
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.. .+ -...|+..|-+++.+.... +... .......+..+.+..|+..+....+++.+ ..|.
T Consensus 166 ~~-------~g-------~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 166 VR-------QQ-------KFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HH-------cC-------CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 32 11 2347788888888764211 1111 12244555566677788888888888887 5553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=82.69 E-value=20 Score=40.80 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~-- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALEL-- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTS--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4678899999999999999999999999887653 46778888889988985 68899988875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----hHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----GKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----~k~w~~wA~~ 1721 (1874)
.+ -.++++..+|.-...+ ...++.+..|++|.+++|+. ...|......
T Consensus 68 -~p-------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 68 -DG-------------------QSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -CT-------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -CC-------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 10 0123445555544443 24578899999999999865 3455555433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=82.53 E-value=5 Score=47.32 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=74.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCC---------cHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN---------PVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~---------~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1874)
.+|....+.+.|..|+.+.+..+...+....... .....-.|..+|..+|+++.|.-.++.+-.. .
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 4566777778888888877766543221100000 0245667888888888888888777654321 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
..-..+..|.++|+|++|+.+|++.+...++. .+....+-.|+..+|+++.-
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 11223445788889999999998888654443 34556677788888887644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=82.08 E-value=13 Score=37.96 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--------CCCCCccccc-CCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQY--------DPETSHENVR-YHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~--------~~~~~~~~~~-~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~ 1638 (1874)
....|...+..+.+.|+++.|.....++... ++.. ++... ....+.+.+..+..+...|+ ..+|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~---~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGD---LHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHH
Confidence 3678899999999999999999998887765 1110 00000 00123556667777888885 6789998
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-HHHHH
Q 000196 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-KAWHS 1717 (1874)
Q Consensus 1639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-k~w~~ 1717 (1874)
++..+.- .. ..+++++.+|.-...+ ...++.+..|++|++++|+.. .++..
T Consensus 86 ~~~al~~-~p---------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 86 SSEVLKR-EE---------------------TNEKALFRRAKARIAA------WKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHH-ST---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHhc-CC---------------------cchHHHHHHHHHHHHH------hcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8876642 11 1234555555555444 246788899999999999987 55666
Q ss_pred HHHHHHHH
Q 000196 1718 WALFNTAV 1725 (1874)
Q Consensus 1718 wA~~n~~~ 1725 (1874)
++.....+
T Consensus 138 l~~~~~~~ 145 (162)
T 3rkv_A 138 MKIVTERR 145 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=82.01 E-value=77 Score=36.22 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=92.9
Q ss_pred cccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHHhhcCccch----hch
Q 000196 119 FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMAENASTVFN----VHV 192 (1874)
Q Consensus 119 l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~r~aA~~~l~~la~~~p~~~~----~~l 192 (1874)
.|...|++|....+..+.++-..-....+..++..++..++-+.. +.-...|.+=-.+|+++..+|...+. +++
T Consensus 86 vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 86 VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 344678999999988888886543333445555555555565653 23346888988999999999988654 467
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH----HHHHHHHHHhhccCC
Q 000196 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1874)
Q Consensus 193 ~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~i~~~~~~~l~~~ 251 (1874)
..+++.|.-|.+++...|-+.+.+.+..++..+++ ......++ |..++..+...+.|+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999988888887764 22333344 445555555556554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=81.78 E-value=7.2 Score=44.90 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------hhhh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------DVQL 1359 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~~~~ 1359 (1874)
.+|.+....|.+..||..++..+...+ +.+..+..-.++.||-++|++|.|.-+++..+... -.++
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 567777778889999999887654221 01345677788999999999999999997543221 1344
Q ss_pred cHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1360 KESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1360 ~~~~~E-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.|.. ..| ++++|...|++..+..++ +.....++.|+.++|+|+......+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHHHHHHcCCHHHHHHHHH
Confidence 445533 224 799999999987654332 2234556669999999987766554
|
| >3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* | Back alignment and structure |
|---|
Probab=81.64 E-value=22 Score=39.15 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHH-HHHHHHhhhCCCcchHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLAS-KVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa-~~lg~l~~~~g~~~~~~v~ 151 (1874)
.+.+|.+++.-..|..|+..+....... ....+..+..|+. ..++=++.+..| .++|.+........
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~---~~~~l~~~~~~l~----~~~nWd~~D~~a~~~~g~~~~~~p~~~----- 132 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI---NETHIPFLEELIV----TKSWWDSVDSIVPTFLGDIFLKHPELI----- 132 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC---CGGGHHHHHHHHT----SSCCHHHHHHHTTTHHHHHHHHCGGGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc----cCCChHHHHHhhHHHHHHHHHHCHHHH-----
Confidence 3456777654444444444443221111 1112223333333 344566666553 67777766421111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
.+.+.+|..++..+.+|.|.+..+.. ........+++.+...+.|++.-||.|.+.+|+.+.
T Consensus 133 --~~~l~~W~~s~~~w~rR~ai~~~l~~-------~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 133 --SAYIPKWIASDNIWLQRAAILFQLKY-------KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp --GGTHHHHHHSSCHHHHHHHHHTTTTC-------GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhcCCchHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 23467899888888888886654322 223344566666777889999999999999999875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.60 E-value=8.9 Score=35.92 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++......+.|..|+.+++...... +......-.+..+|..+|+.+.+.-.++..... .+ ....+..+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566666677777777666554321 222344445555555555555555544432210 00 01122235
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 000196 1365 EKLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~ 1382 (1874)
.+.|++++|...|++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=81.27 E-value=13 Score=42.99 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=74.4
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----------hhhc
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----------VQLK 1360 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----------~~~~ 1360 (1874)
+.+-.+.+.|..|+.+.+....-.+..............|..+|.. |+++.+...++.+-.... ....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4444555677777777765443211100000112455678888988 999988877664322110 1122
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC-C--chhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQASN-P--HIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~~-~--~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
+..|.++|+|++|+.+|++.+...++ + ........+...|+..+|+++.-....+..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34588999999999999998753211 1 111234567778888999998776666553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=80.28 E-value=12 Score=34.58 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc-chHHhHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD-DSLQDILR 1771 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~-~~~q~~~R 1771 (1874)
..++.+..|.++++.+|+...+|...|...... .-...|+..|-+++...+ . ........
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------------~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~ 81 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------------ERYEEAVDCYNYVINVIE-----DEYNKDVWAA 81 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSC-----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhCc-----ccchHHHHHH
Confidence 457788999999999999999999888775531 123478889999988752 2 13556677
Q ss_pred HHHHHHhc-CCcHHHHHHHHhcccCCCh
Q 000196 1772 LLTLWFNH-GATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1772 lLtLwf~~-g~~~~v~~~~~~~~~~ip~ 1798 (1874)
+-.+++.. |...+..+.+++.+..-|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77788888 8888888888887766554
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=80.23 E-value=11 Score=51.80 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred HHHHHHhhhcCC----ChhhhhhHHHHHhHhhcccc----CcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000196 70 LYDRISGLLESN----DAAENLGALRAIDELIDVAL----GENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1874)
Q Consensus 70 l~~~i~~l~~s~----~~~~r~~~i~ai~~li~~~~----~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~ 141 (1874)
+.+.+.++++++ +..-|..++++++.|+.... ......+..+.++|...+. ..|.+-+..+-++||.+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhccCCh
Confidence 455566777653 44556789999999976421 1133456778888888886 45788888999999998653
Q ss_pred CCCcchHHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh--cCCchhHHHH
Q 000196 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL--RDPTLAVRER 213 (1874)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l--~D~~~~VR~a 213 (1874)
. . ++.+.+++.. +.....|.+|+++|+.++..-|.. +-+.++... ++.+++||-+
T Consensus 471 ~---~-------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 N---S-------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp G---G-------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHH
T ss_pred h---H-------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHH
Confidence 1 1 3444455532 223357789999999998665543 334445555 3457899999
Q ss_pred HHHHHH
Q 000196 214 AVEALR 219 (1874)
Q Consensus 214 A~~al~ 219 (1874)
|+..|=
T Consensus 534 A~~~Lm 539 (1056)
T 1lsh_A 534 SCIVFF 539 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998663
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.03 E-value=6.1 Score=38.32 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~Rl 1772 (1874)
..++.+..|+++++.+|+...+|+.+|...... .-...|+..|-+++.+. + ........+
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~-----P-~~~~~~~~l 91 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD-----P-KDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHH
Confidence 357788999999999999999999999876541 12347899999999985 2 234455666
Q ss_pred HHHHHhcCCcHHHHHHHHhcccC
Q 000196 1773 LTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
-.++...|..++....+++.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777766666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1874 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-27 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-22 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-18 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-10 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-15 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-07 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 3e-05 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 9e-14 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 6e-13 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-09 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 6e-10 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-06 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 7e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.004 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.004 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.003 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.004 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-05 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (296), Expect = 3e-27
Identities = 108/883 (12%), Positives = 255/883 (28%), Gaps = 60/883 (6%)
Query: 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDF 613
I L+EK+ +D R + L D + + I L D++
Sbjct: 5 ISNLLEKMT-----SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG 59
Query: 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673
+V+ A+ G L K Y + + L + S + R+ S+ L +I
Sbjct: 60 EVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-----SDKEQLRDISSIGLKTVIGEL 114
Query: 674 ERLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELM 731
A + K + RL + + L + D+ G + + ++
Sbjct: 115 PPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 174
Query: 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTR 791
++ L R+ + LG +V S + L+ LL L+ ST
Sbjct: 175 TCLLPQLTSPRLAV-RKRTIIALGHLVMS-----CGNIVFVDLIEHLLSELSKNDSMSTT 228
Query: 792 REVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851
R ++ + + H + L V + + + E+ + + SF
Sbjct: 229 RTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVD---DDELREYCIQAFESFVRRC 283
Query: 852 DYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC 911
+++++ I L +M + D +
Sbjct: 284 PKEVYPHVSTIINICLK-YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 342
Query: 912 DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVL---- 967
++ L +VS + + ++ + + + + + L
Sbjct: 343 SWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 402
Query: 968 ---------HLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF 1018
+ ++ +P I+ + + + + + V
Sbjct: 403 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 462
Query: 1019 GGTLDEHMHLLLPALIRLFKVDAPVDIRRAA----IETLTRLIPRVQVTGHISSLVHHLK 1074
G L +H+ +L+P +I + + + + H+ +LV +
Sbjct: 463 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 522
Query: 1075 LVLDGKNDELRKDAVDALCCLAHALG-------EDFTIFIPSIHKLLLKHRLRHKEFEEI 1127
+ ++ +A+ L + D T +I + +K +E+
Sbjct: 523 ACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEV 582
Query: 1128 EGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQLRGHQASQRS 1187
+ R + + L + ++ T L +
Sbjct: 583 KERA--ISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKID 640
Query: 1188 TKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQK 1247
+ E + L+ L K + L T + L L L AA + +
Sbjct: 641 LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDE-----LP 695
Query: 1248 HLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHY 1307
L+ +M S I + + + L I L+ + + A + L +
Sbjct: 696 PLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDF 755
Query: 1308 KEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKL 1367
+ +N + + ++ ++ + H+ + + L + +
Sbjct: 756 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVV 815
Query: 1368 QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410
++ +K + S + L +G L+ + +
Sbjct: 816 GQFIQDVKNSRSTDSIRLLALLSL-GEVGHHIDLSGQLELKSV 857
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 3e-22
Identities = 122/1057 (11%), Positives = 298/1057 (28%), Gaps = 56/1057 (5%)
Query: 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102
A+ L +++ + L ++ + + + + L + N +NL A++ + L+
Sbjct: 23 ATNDLMTELQKDSIKLDDDSERKVVKMI---LKLLEDKNGEVQNL-AVKCLGPLVSKVKE 78
Query: 103 ENASK-VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDW 160
V M + E RD + L + + + G+ A V +
Sbjct: 79 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 138
Query: 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220
+ + A+ I+ +M + + + L P LAVR+R + AL
Sbjct: 139 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198
Query: 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280
+ + + E L +N + + + + + R G +
Sbjct: 199 LVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
++ +V+++ D +R ++ +N L L +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNY 310
Query: 341 GFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPH 400
E A+D + + K A C+ + ++
Sbjct: 311 DDED--EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 368
Query: 401 VRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAAT 460
+ + + S + + + SLL + + + +
Sbjct: 369 YKTVSPALISR-FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 427
Query: 461 PIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDD-EDKATR 519
+ V + +Q+ + + N L + V + DK++
Sbjct: 428 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS 487
Query: 520 KDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH 579
+ + + S F + + + I + A
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYK---ITSEALLVTQQLV 544
Query: 580 SIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR 639
+ L FD D + L D D A + + L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK--ERAISCMGQIICNLGDNLG 602
Query: 640 RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN 699
L L + + R + K L + + ++ + + L
Sbjct: 603 SDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPI----LASFLRK 658
Query: 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759
+ G L + L + + + + + + L+ + + ++A+S L + +
Sbjct: 659 NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 718
Query: 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819
++ + +L L+ ++ L+ + + + L
Sbjct: 719 VYPSSLSKISG--SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML 776
Query: 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVV 879
+ S + H Q + V + + S S +
Sbjct: 777 TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLAL 836
Query: 880 GSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
SL + + L L V+ + F + + +K ++ LG++ ++
Sbjct: 837 LSLGEVGHHIDLSGQLELKSVILEAFSSP---SEEVKSAASYALGSISVGNLPEYLPFVL 893
Query: 940 EL--------FSLISELWSSFSLPATNRTYRGLP-VLHLVQQLCLALNDEFR-------- 982
+ + L+ L S + + + L+ + C + R
Sbjct: 894 QEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG 953
Query: 983 ----THLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFK 1038
+LP L + V + T+ +D + + ++ +
Sbjct: 954 KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE 1013
Query: 1039 VDAPVDIRRAAIETLTRLIPRVQ--VTGHISSLVHHL 1073
D +++RR A+ T + + +++ HL
Sbjct: 1014 -DPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.6 bits (218), Expect = 5e-18
Identities = 110/1030 (10%), Positives = 275/1030 (26%), Gaps = 117/1030 (11%)
Query: 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVE----------- 216
+R A ++ E+ +++ + + + V I L D V+ AV+
Sbjct: 19 FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 78
Query: 217 ---------------------------ALRACLRVIEKRETRWRVQWYY--RMFEATQDG 247
L+ + + + + ++
Sbjct: 79 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 138
Query: 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307
+ + V +L + ++L G +++ + + +L L VR L
Sbjct: 139 IAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH 198
Query: 308 IAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHL 367
+ + + ++ ++ + + + + ++ + YL I +
Sbjct: 199 LVMSCGNIVFVDLIEHLLSELSKN-DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV 257
Query: 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVS 427
+ + + + R + PHV +++I +
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC-----------------LK 300
Query: 428 IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487
+ P D + + + ++ +V A +
Sbjct: 301 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR----RAAAKCLDA 356
Query: 488 TLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547
++ + + + +++ + ++ + D L+ + S+ +
Sbjct: 357 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAME 416
Query: 548 NRTG--GKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ--ADCLSA 603
+ + +V+ L + T + L Q +
Sbjct: 417 QGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPG 476
Query: 604 IFAALNDEDFDVR---EYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-----SSAD 655
I +LND+ + + L +P P ++ + ++ + +S
Sbjct: 477 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA 536
Query: 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715
++ K++ L + PYI + + RL + + + + +G +
Sbjct: 537 LLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQI 593
Query: 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLL 775
G + + + + +E L + R V L + S +
Sbjct: 594 ICNLGDNLGSDLPNTLQIFLERLKNE---ITRLTTVKALTLIAGSPLKID--LRPVLGEG 648
Query: 776 GLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835
+L + + + L L I+ + + + Q
Sbjct: 649 VPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQM 708
Query: 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP 895
F L + +S S +N L+ ++R P L + G +
Sbjct: 709 AISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLG 768
Query: 896 YLPKVLPDLFHTVRTCDDYLKDYITWK-----LGTLVSIVRQHIRKYLQELFSLISELWS 950
Y +L L V + L ++ + L + + + + S
Sbjct: 769 Y-MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRS 827
Query: 951 SFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHL----PVILPCCIQVLSDAERCNDYT 1006
+ S+ G H+ L L + L N
Sbjct: 828 TDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 887
Query: 1007 YVLDILHTLE-------------------VFGGTLDEHMHLLLPALIRLFKVDAPVDIRR 1047
Y+ +L + L ++ + L++ + A R
Sbjct: 888 YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRN 946
Query: 1048 AAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFI 1107
E L +L +L+ LK L + R V A+ + +
Sbjct: 947 VVAECLGKLTLI-----DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001
Query: 1108 PSIHKLLLKH 1117
+ LK
Sbjct: 1002 KNCIGDFLKT 1011
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.8 bits (164), Expect = 1e-11
Identities = 72/730 (9%), Positives = 182/730 (24%), Gaps = 83/730 (11%)
Query: 23 LDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESND 82
D + L+ L + E + + + ++
Sbjct: 389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL----TMLQSQVPNIVKALHKQMKEKS 444
Query: 83 AAENLGALRAIDELIDVALGENA-SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
+ EL++V G + ++ + + + A L +
Sbjct: 445 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 504
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAI-- 199
+ + GD A+L+ +++ + + + I
Sbjct: 505 HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD 564
Query: 200 -------WVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252
+ D V+ERA+ + + + E ++ + R
Sbjct: 565 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 253 PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL 312
V ++ + E I+ +L R ++L S L +
Sbjct: 625 TVKALTLIAG------SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 678
Query: 313 RDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYL----PTITSH 366
D + ++ + ++ L +A L +
Sbjct: 679 SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL 738
Query: 367 LREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITV 426
+R + ++ + +R L ++S + T + I
Sbjct: 739 VRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 798
Query: 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLAL 486
+ +L + + S++ + L+L
Sbjct: 799 CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR-------------------LLALLSL 839
Query: 487 QTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASR 546
+ + ++ + + A+ + + + F
Sbjct: 840 GEVGHH--IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQE 895
Query: 547 SNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFA 606
++ L+ L E + A+V V + + +
Sbjct: 896 ITSQPKRQYLLLHSLKEIISSASVVGLKPYVE--------------------NIWALLLK 935
Query: 607 ALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666
+ R G+L+ +P +LP L+ +L S + R +
Sbjct: 936 HCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYL---------ISGSSYARSSVVTAV 986
Query: 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726
I + + I P + + L + + + LVT A +R
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDP-----DLNVRRVALVTFNSAAHNKPSLIRDL 1041
Query: 727 ISELMPLIVE 736
+ ++P +
Sbjct: 1042 LDTVLPHLYN 1051
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (153), Expect = 2e-10
Identities = 113/958 (11%), Positives = 261/958 (27%), Gaps = 89/958 (9%)
Query: 923 LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982
LG LVS V+++ ++ + + S + + GL + + +
Sbjct: 69 LGPLVSKVKEYQ---VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 983 THLPVILPCCIQVLSDAERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDA 1041
I ++ E + LDI+ + GG L +L L+
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-SP 184
Query: 1042 PVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101
+ +R+ I L L+ + + H L + + + + + ++ G
Sbjct: 185 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244
Query: 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLN 1161
++ I L++K + E E + A + RR P EV
Sbjct: 245 RIGEYLEKIIPLVVKF-CNVDDDELREYCI----------QAFESFVRRCPKEVYPHVST 293
Query: 1162 DVDSDPYEDGTDAQKQLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRTCARLAQL 1221
++ K L +++ M + +
Sbjct: 294 IINI--------CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ--------------- 330
Query: 1222 QPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDE 1281
+ ++ W A ++ P + L++ F E +E
Sbjct: 331 ---GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR--FKEREE 385
Query: 1282 KPLPIDIRLLGALAEKCRAFAKALHYKE-MEFEGARSNRMDANPVAVVEALIHI--NNQL 1338
+L ++ R L + ME + + +V+AL +
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 445
Query: 1339 HQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398
+ +LT L L + + +L ++ + L +
Sbjct: 446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS-------SSNLKIDALSCL 498
Query: 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDE 1458
+ + + + P + + A + ++
Sbjct: 499 YVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV------------ 546
Query: 1459 SKLRGLGNTAANGDGSSNGTFFRAVL--LVRRGKVLESYERAYSNMVRVQQ--LSELEEV 1514
+R L ++ F + L E ERA S M ++ L
Sbjct: 547 --IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1515 IDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLK 1574
+ + + I G+ +++ L ++ + LK
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 664
Query: 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR-- 1632
+L I +L + + V + + +L +
Sbjct: 665 LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 724
Query: 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692
+ + + L P++Q A +++ V + + P
Sbjct: 725 SKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQS 784
Query: 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHS 1752
+ +Y + +C +A + + + + G
Sbjct: 785 TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 844
Query: 1753 IACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARI 1812
++ ++ F+ +EEV+ A +++ LP ++ I
Sbjct: 845 HID-------LSGQLELKSVILEAFSSP-SEEVKSAASYALGSISVGNLPEYLPFVLQEI 896
Query: 1813 HSNNR-------AVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDK 1863
S + +++E+I S V + + + + LL C+ R E + K
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGK 954
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 2e-15
Identities = 67/545 (12%), Positives = 143/545 (26%), Gaps = 31/545 (5%)
Query: 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650
FD + + + A D VR A+ ++ Y+ + L +
Sbjct: 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268
Query: 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710
+S D + + C+ + I A R E T G + ++
Sbjct: 269 KSDIDEVALQ----GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324
Query: 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ L+ A + ++ L + + Y +
Sbjct: 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384
Query: 771 YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830
+ + V+ M L + + + +
Sbjct: 385 AAVMA-----FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG 890
D + L VA N SLA + +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS---SLAEAAYEAADVADDQEEPAT 496
Query: 891 LGCVPYLPKVLPDLFHTVRTCDDY---LKDYITWKLGTLVSIVRQHIRKYLQELFSLISE 947
++ L T D + L+ L +V + +Q+ +I E
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 948 LWSSF----------SLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLS 997
S + L L L + + V++ +++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 998 DAERCNDYT--YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTR 1055
++ + +EV GG ++M P L K A + AA+ +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1056 LI--PRVQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIH 1111
L + + ++ L L +N ++ + +A A+G +F ++ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVL 736
Query: 1112 KLLLK 1116
L +
Sbjct: 737 NTLQQ 741
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 1e-07
Identities = 97/765 (12%), Positives = 217/765 (28%), Gaps = 99/765 (12%)
Query: 69 QLYDRISGLLESNDAAENL--GALRAI----DELIDVALGENASKV-SKFSNYMRTVFEV 121
+L ++ + + ++ E++ L AI ++ L + ++++ + MR
Sbjct: 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 187
Query: 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDWLRGDRVEYRRFAAVLILKEM 180
+ + A+ L + A E E + + R AA+ L ++
Sbjct: 188 NNVK---LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244
Query: 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
++ + AI + + E A++ + V ++
Sbjct: 245 MSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDE--------EMDLA 294
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
EA++ P H+ + L +++ E + D +
Sbjct: 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE-------NDDDDDWNPCKA 347
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG---ELF 357
L +A D + + + I ++ P R + +L
Sbjct: 348 AGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 358 HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTL 417
+ L E + A VG I +
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND----------------- 446
Query: 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477
+ + L+ + + + S ++A A + + +
Sbjct: 447 ----VYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502
Query: 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGV 537
VQ L+T R + ++L A +S++ + + K ++ +
Sbjct: 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562
Query: 538 SFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ 597
S S+R + L L L D +
Sbjct: 563 QMESHIQSTSDRI--QFNDLQSLLCATLQNVLRKVQHQDALQI----------SDVVM-- 608
Query: 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657
L +F + V+E A+ L E L + L L ++ A+ +
Sbjct: 609 -ASLLRMFQST-AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL-KNYAEYQ 665
Query: 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717
+ L+G L R + I P+ + + L+ L N + + +L GD+A
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE---NVHRSVKPQILSVFGDIAL 722
Query: 718 VGGFGMRQYISELMPLIVEAL----------LDGAAVTKREVAVSTLGQVVQS------- 760
G ++Y+ ++ + +A + RE + +VQ
Sbjct: 723 AIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782
Query: 761 ---TGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIM 801
++ P +L + + E ++G +
Sbjct: 783 VHPDVMLVQPR--VEFILSFIDHIAGDEDHTDGVVACAAGLIGDL 825
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-05
Identities = 109/883 (12%), Positives = 237/883 (26%), Gaps = 130/883 (14%)
Query: 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT--LAVRERAVEALRACLRVIEK 227
AA L+ A F V ++ L +P R A ++ L +
Sbjct: 18 LEAAQKFLERAAVENLPTFLVELSR-------VLANPGNSQVARVAAGLQIKNSLTSKDP 70
Query: 228 RETRWRVQWYYRMFEATQDGL------GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281
Q + + + + + + V + E ++++ E
Sbjct: 71 DIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACA--EIPVNQWPE 128
Query: 282 VAEIVLRYLEHRDRL--VRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD 339
+ ++ + + + ++ S + I + + + + I+ +R +
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188
Query: 340 SGFIALGEMAGAL------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393
+ +A + + I + EA + + AL + I
Sbjct: 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 394 GPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLL--------DCISF 445
ME ++ L + + + + + Q ++ D +
Sbjct: 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE 308
Query: 446 VLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505
SK + A PI + + D + P + A L D +
Sbjct: 309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368
Query: 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565
+ +DAA+ + + + L+E +
Sbjct: 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-----------VIQAMPTLIELM 417
Query: 566 LI--AAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623
V D I L D +LA L + L+ E V
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP--LLQCLIEGLSAEP-RVASNVCWAF 474
Query: 624 GRLSEKNPAYV----------LPALRRHLIQLLTYL-----EQSSADNKCREESAKLLGC 668
L+E L ++ L N R + + L
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 669 LIRNCERLIRPYIAPIHKALVARLLEGTGINAN----------NGIISGVLVTVGDLAR- 717
+++N + P + ++ RL + + ++ N + S + T+ ++ R
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 718 VGGFGMRQYISELMPLIVEALLDGA-AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLG 776
V Q +M ++ A + +E A+ + +V+ G Y
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY--MEAFKP 652
Query: 777 LLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836
L L + + ++G + +I P
Sbjct: 653 FLGIGLKNYAEYQVCLAAVGLVGDL------------------------CRALQSNIIPF 688
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
+ M L +E+ + +V ++ I ++G Y
Sbjct: 689 CDEVMQLLLENLGNENVHRSVKPQ-----------------ILSVFGDIALAIGGEFKKY 731
Query: 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956
L VL L + D + L L R+ E ++ I +
Sbjct: 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNEL--------RESCLEAYTGIVQGLKGDQENV 783
Query: 957 TNRTYRGLPVL-HLVQQLCLALNDEFRTHLPVILPCCIQVLSD 998
P + ++ + DE T ++ C ++ D
Sbjct: 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTD--GVVACAAGLIGD 824
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.3 bits (181), Expect = 9e-14
Identities = 97/815 (11%), Positives = 236/815 (28%), Gaps = 75/815 (9%)
Query: 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI-DVALGENA 105
+R + + + + L ++ LL+S D GA A+ ++ D A ++
Sbjct: 104 IRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS 163
Query: 106 SKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162
+ + N M F +I A + + ++ +
Sbjct: 164 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALA- 222
Query: 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222
GD R L + E H+ V+ + +D V A E
Sbjct: 223 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 282
Query: 223 RVIEKRE----------------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266
++ ++ + ++ I
Sbjct: 283 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRT 342
Query: 267 LLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326
+ + E + + + + D +R + L +A+ RD + + L +
Sbjct: 343 VAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE 402
Query: 327 HILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACV 386
+ ++SG + LG +A + YLP + HL + ++ ++ +
Sbjct: 403 LLFHH--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 460
Query: 387 GNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFV 446
A + L ++D+ +++ + S T+++ +
Sbjct: 461 SRYAHWVVSQPPDTYL----KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 516
Query: 447 LSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506
L+ + + N++ + + L S L L+
Sbjct: 517 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI------QMLMPPLIQK 570
Query: 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT-GGKRRRLIEELVEKL 565
+ D++ + L C + F + R ++ L + ++
Sbjct: 571 WNMLKDED----KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNA 626
Query: 566 LIAAVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620
D L G + +A+++ L+ ++ + D+ +VR+ +
Sbjct: 627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 686
Query: 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680
++ G L++ +V P + + L T L + +G + ++PY
Sbjct: 687 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS--VCNNATWAIGEISIQMGIEMQPY 744
Query: 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740
I + LV + N ++ +T+G L V + + + + +L +
Sbjct: 745 IPMVLHQLVEIINRP---NTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 801
Query: 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVW-----STRREVL 795
+++ A + ++ ++ + + W R
Sbjct: 802 IRDNEEKDSAFRGICTMISVN---------PSGVIQDFIFFCDAVASWINPKDDLRDMFC 852
Query: 796 KVLG-------------IMGALDPHAHKRNQQLSG 817
K+L +R G
Sbjct: 853 KILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 887
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (174), Expect = 6e-13
Identities = 102/704 (14%), Positives = 216/704 (30%), Gaps = 50/704 (7%)
Query: 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN 104
AL E + R A ++ DR+ + + R D+ +VAL
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI---VEYMLQRTQDQDENVAL--- 272
Query: 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD 164
+ + T+ E +++LV L + G + ++ +
Sbjct: 273 -----EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIP 327
Query: 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224
E + +A+ + D I +R+ + AL V
Sbjct: 328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANV 387
Query: 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE 284
+ + + +L +G + + M+ E+
Sbjct: 388 YRDELLPHILPLLKELLFHHEW--------VVKESGILVLGAIAEGCMQGMIPYLPELIP 439
Query: 285 IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR--IPAERDSGF 342
+++ L + LVR L R AH++ + YLK M +L + +++
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499
Query: 343 IALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402
A + EL YL I L A + + K L +G +A ++G +
Sbjct: 500 SAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE- 558
Query: 403 GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462
+ L L+ + L P LL+C+S V + + S P P+
Sbjct: 559 ------YIQMLMPPLIQKWNMLKDEDKDLFP-----LLECLSSVAT-ALQSGFLPYCEPV 606
Query: 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDA 522
+N+ Q+ Q +F L + + L + E R +
Sbjct: 607 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 666
Query: 523 ALCCCKLVANSFSGVSFTQFGA-SRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSI 581
+ + + V + F + + + +L + ++V ++
Sbjct: 667 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNA 726
Query: 582 FSSL-----YGNRGFDDFLAQADCLSAIFAALNDEDFD--VREYAISVAGRLSEKNPAYV 634
++ ++ L + +N + + E GRL P V
Sbjct: 727 TWAIGEISIQMGIEMQPYIPM--VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 784
Query: 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694
P L++ + T L DN+ ++ + + + +I + A+ + +
Sbjct: 785 APMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 843
Query: 695 GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738
+ + +L + VG R++ + + E L
Sbjct: 844 KDDLRD---MFCKILHGFKNQ--VGDENWRRFSDQFPLPLKERL 882
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 4e-11
Identities = 95/698 (13%), Positives = 212/698 (30%), Gaps = 71/698 (10%)
Query: 483 QLALQTL-----ARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF--- 534
L+ L A F + + +F + + + D R + + +
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN 123
Query: 535 -------------SGVSFTQFGA----------SRSNRTGGKRRRLIEELVEKLLIAAVA 571
S T GA S R + ++ K L
Sbjct: 124 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFK 182
Query: 572 DADVTVR---HSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628
+ +R + + +R L +FA DE+ +VR+ L E
Sbjct: 183 HSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLE 242
Query: 629 KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688
+LP + + +L + + L C+ ++ ++ + L
Sbjct: 243 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 302
Query: 689 VARL----LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744
V + ++ + + + + D+ I E D +
Sbjct: 303 VNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEI 362
Query: 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGAL 804
+ + + + +LL +L +L L + ++GA+
Sbjct: 363 DDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 422
Query: 805 DPHAHKRNQQLSGSHGE-VTRAASDSGQHIQP--MDEFPMDLWPSFATSEDYYSTVAINS 861
+ + + SD ++ + D Y +
Sbjct: 423 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 482
Query: 862 LMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITW 921
L++ + D + + + + + VPYL +L L +
Sbjct: 483 LLKRILDSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYD 541
Query: 922 KLGTLVSIVRQHIRK--YLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND 979
+GTL V H+ K Y+Q L + + W+ + P+L + + AL
Sbjct: 542 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL----FPLLECLSSVATALQS 597
Query: 980 EFRTHLPVILPCCIQVL----------------SDAERCNDYTYVLDILHTL-EVFGGTL 1022
F + + C+ ++ +A + LD+L L E GG +
Sbjct: 598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657
Query: 1023 DEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLD 1078
++ + +L + + + D ++R+++ L L V I+ + L L+
Sbjct: 658 EQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 716
Query: 1079 GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116
+ + +A A+ ++ +G + +IP + L++
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 754
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 1e-09
Identities = 105/854 (12%), Positives = 252/854 (29%), Gaps = 128/854 (14%)
Query: 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS 340
+ L + L+R ++ L+ IA + + L + + + +
Sbjct: 88 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS--EDYNTCEG 145
Query: 341 GFIALG----EMAGALDGELF-HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP 395
F AL + A LD ++ L + + K A+ACV +
Sbjct: 146 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 205
Query: 396 VMEPHVRGLLDIMFSAGLS--TTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYS 453
+ H+ + +F+ + + + V + + + I + +
Sbjct: 206 ALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD 265
Query: 454 QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDD 513
Q A + + +Q + L + K D+ D ++L D
Sbjct: 266 QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI-----DIILLKGDV 320
Query: 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE-KLLIAAVAD 572
E+ T D+ +F SR+ + EE + +
Sbjct: 321 EEDETIPDSE------------QDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 573 ADVTVRHS--IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630
+D +R + N D+ L L + L ++ V+E I V G ++E
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPH--ILPLLKELLFHHEWVVKESGILVLGAIAEGC 426
Query: 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALV 689
++P L + L+ L A R + L + Y+ P+ L+
Sbjct: 427 MQGMIPYLPELIPHLIQCLSDKKAL--VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL 484
Query: 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREV 749
R+L ++N + L + Y++ ++ +V A +
Sbjct: 485 KRIL-----DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH-KNLLI 538
Query: 750 AVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAH 809
+G + S G+ + L+ L++ N +
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN--------------------MLKDED 578
Query: 810 KRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP 869
K L V A+ P E P + + +++ +
Sbjct: 579 KDLFPLLECLSSV---ATALQSGFLPYCE------PVYQRCVNLVQKTLAQAMLNNAQPD 629
Query: 870 SLASYHQKVVGSLMFIFKSMGLGCVPYLPK------VLPDLFHTVRTCDDYLKDYITWKL 923
+ + + + + + G + + +L ++ ++ ++ L
Sbjct: 630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL 689
Query: 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT 983
G L QH++ + + ++ + + N + ++ + + E +
Sbjct: 690 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN------ATWAIGEISIQMGIEMQP 743
Query: 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPV 1043
++P++L +++++ P
Sbjct: 744 YIPMVLHQLVEIINRPNT----------------------------------------PK 763
Query: 1044 DIRRAAIETLTRLIPRV--QVTGHISSLVHH-LKLVLDGKNDELRKDAVDALCCLAH--- 1097
+ T+ RL +V + + + + +++E + A +C +
Sbjct: 764 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823
Query: 1098 -ALGEDFTIFIPSI 1110
+ +DF F ++
Sbjct: 824 SGVIQDFIFFCDAV 837
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 6e-10
Identities = 51/532 (9%), Positives = 148/532 (27%), Gaps = 21/532 (3%)
Query: 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650
+ + + + A ED +V+ A ++ K ++ P + + L L
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275
Query: 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710
+S ++K + + + + L + + I + +L
Sbjct: 276 KSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334
Query: 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770
+ + + + L + + +
Sbjct: 335 RQNEDPEDDDWNVSMSAGACLQLFAQ---------NCGNHILEPVLEFVEQNITADNWRN 385
Query: 771 YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830
+ +++G V + L + L + ++ + + R A
Sbjct: 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT--AWCIGRIADSVA 443
Query: 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG 890
+ I P P + +D+ VA N I+ + + G
Sbjct: 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502
Query: 891 LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950
L + + + + +Y T + + + + L + S+ +
Sbjct: 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562
Query: 951 SFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCN-DYTYVL 1009
+ + ++ + +++ ++L + +
Sbjct: 563 LEDAQSLQELQSNIL--TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620
Query: 1010 DILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV--QVTGHIS 1067
I G ++++ P L++ + A+ + + + +
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISNSLEEDFRRYSD 679
Query: 1068 SLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117
++++ L ++ N EL+ + +A +G DF ++ I L +
Sbjct: 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 1e-06
Identities = 33/250 (13%), Positives = 83/250 (33%), Gaps = 21/250 (8%)
Query: 289 YLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALG 346
+ + + + +A L F YL+ ++L L + +
Sbjct: 606 LEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKALNQVDSPVSITAVGFIA 664
Query: 347 EMAGALDGELFHYLPTITSHLREAIAPRRGKPSL--EALACVGNIARAMGPVMEPHVRGL 404
+++ +L+ + Y + + L + I+ + L L+ G+IA +G P++ +
Sbjct: 665 DISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI 724
Query: 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPI 462
+ + +A +T + + +L + LD +++ P I
Sbjct: 725 MALCVAA-QNTKPENGTLEALDYQIKVLEAV----LDAYVGIVAGLHDKPEALFPYVGTI 779
Query: 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHDLLEFARDSVVLYL-------DD 513
+ + + + A + A+ + F + +F V+
Sbjct: 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQL 839
Query: 514 EDKATRKDAA 523
+AT+ A
Sbjct: 840 FSQATKDTAR 849
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 7e-06
Identities = 80/742 (10%), Positives = 201/742 (27%), Gaps = 58/742 (7%)
Query: 68 DQLYDRISGLLESNDAAEN-LGALRAIDELIDVALGENASKVSKFSNYMRTVFEV----K 122
+L + + +L A+ + + A ++ + VS +N + + + +
Sbjct: 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTE 192
Query: 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMA 181
+ + + A L E E M + + AA L ++
Sbjct: 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM 252
Query: 182 ENASTVFNVHVAEFVDAIWVA-LRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240
T ++ + + A+ +A ++ P V VE
Sbjct: 253 SKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY---------- 302
Query: 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300
+ +P+ S + +L ++ +++ N + + + +
Sbjct: 303 ----ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGAC---- 354
Query: 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYL 360
L + + N R F ++ + + +Y+
Sbjct: 355 ---LQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--KVQRTYYV 409
Query: 361 PTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA 420
+ + + + C+G IA ++ ++P + L+
Sbjct: 410 HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ------QHLPGVVQACLIGL 463
Query: 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480
+ V+ I + ++ A N ++ SA
Sbjct: 464 QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523
Query: 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFT 540
+ + F D + + ++ + A +L +N + +
Sbjct: 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVL--- 580
Query: 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVR---HSIFSSLYGNRGFDDFLAQ 597
A+ ++ + + L+ + S+L + G
Sbjct: 581 ---AAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL 637
Query: 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657
+ ALN D V A+ +S + L + +A +
Sbjct: 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697
Query: 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARL------LEGTGINANNGIISGVLVT 711
+ + G + N PY+ I VA ++ ++ VL
Sbjct: 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757
Query: 712 VGDLARVGGFG---MRQYISELMPLIVEALLDGAAVTKREV---AVSTLGQVVQSTGY-V 764
+ + Y+ + I + D ++ AV +G +
Sbjct: 758 YVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGS 817
Query: 765 ITPYNEYPQLLGLLLKMLNGEL 786
I + ++ + + +G+L
Sbjct: 818 IKQFYGQDWVIDYIKRTRSGQL 839
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 3e-06
Identities = 74/569 (13%), Positives = 166/569 (29%), Gaps = 51/569 (8%)
Query: 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCL-SAIFAALNDEDFD 614
R EL+ L + D D V ++ L CL + + E+
Sbjct: 45 RTRSELLP-FLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETV 102
Query: 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674
VR+ A+ +S ++ L H + L+ L + L
Sbjct: 103 VRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSR-TSACGLFSVCYPRVS 158
Query: 675 RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734
++ + + L + + + +G+ A+V + + +
Sbjct: 159 SAVKAELRQYFRNLCS--------DDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPM 207
Query: 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794
L + R +AV + + P + L+ L+ + W R V
Sbjct: 208 FSNLASDEQDSVRLLAVEACVNI-----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMV 262
Query: 795 LKVLGIMGALDPHAHKRNQQLSG------------------SHGEVTRAASDSGQHIQPM 836
+ + + E S + M
Sbjct: 263 ADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322
Query: 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896
+ + + + + + + +M + + + ++ + K
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 382
Query: 897 LPKVLPDL--FHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSL 954
+ L + +R L I VR I +Y+ L + + L
Sbjct: 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL 442
Query: 955 PATNRTYRGLPVLHLVQQLCLALNDEFRT-----HLPVILPCCIQVLSDAERCNDYTYVL 1009
+ + V + + L I+P + + D + T +
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLF 502
Query: 1010 DILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSL 1069
I EV G D +LP ++R+ D ++R ++L ++ P + + S +
Sbjct: 503 CINVLSEVCG--QDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 1070 VHHLKLVLDGKNDELRKDAVDALCCLAHA 1098
L+ + ++ +++ A +AL L+ A
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 0.003
Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 10/154 (6%)
Query: 967 LHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTL--DE 1024
+ + + LAL E RT +LP + D + +L + L F + E
Sbjct: 31 IKKLSTIALALGVE-RT-RSELLPFLTDTIYDEDEV-----LLALAEQLGTFTTLVGGPE 83
Query: 1025 HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDEL 1084
++H LLP L L V+ V +R A+E+L + + + V +K + G
Sbjct: 84 YVHCLLPPLESLATVEETV-VRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTS 142
Query: 1085 RKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118
R A + + + L
Sbjct: 143 RTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD 176
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.004
Identities = 75/620 (12%), Positives = 164/620 (26%), Gaps = 55/620 (8%)
Query: 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN 81
SL + ++ +L N L K + A LG E R +L ++ +
Sbjct: 8 SLYPIAVLIDEL---RNEDVQLRLNSIKKLSTIALALGVE---RTRSELLPFLTDTIYDE 61
Query: 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141
D L + + G + + + E +V K + L
Sbjct: 62 DEVL-LALAEQLGTFTTLVGGPEYVHC-----LLPPLESLATVEETVV-RDKAVESLRAI 114
Query: 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201
+ ++E + L G R +A + V + AE
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR---VSSAVKAELRQYFRN 171
Query: 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD------GLGRNAPVH 255
D T VR A L +V+E + + + + + + +
Sbjct: 172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITS--LLPRIAHFLR 313
+ ++ + + V +V + V IT L+P + ++
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 314 DRFVTNYLKICMNHILTVLRIPAERDSGFI---ALGEMAGALDGELFHYLPTITSHLREA 370
D + A+ I L + + H + S +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 371 IAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS 430
++E L + + + + +P+
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-----QLSQSLLPA 406
Query: 431 LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLA 490
++ +D ++ + + ++ + A + A L
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466
Query: 491 RF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548
+ F V+ D + R L C +++
Sbjct: 467 KLVEKFGKEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCG------------- 512
Query: 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAA 607
+ + + + ++ D VR ++ SL D+ Q++ +
Sbjct: 513 ------QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 608 LNDEDFDVREYAISVAGRLS 627
D+D DV+ +A LS
Sbjct: 567 TQDQDVDVKYFAQEALTVLS 586
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 0.002
Identities = 75/520 (14%), Positives = 154/520 (29%), Gaps = 33/520 (6%)
Query: 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCRE 660
+ + LNDED V A + +LS+K + ++ + Q++ D +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720
+A L L + E L+ + + ALV L + ++ + T+ +L
Sbjct: 79 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQE 133
Query: 721 FGMRQYISE-LMPLIVEALLDGAAVTKREVA--VSTLGQVVQSTGYVITPYNEYPQLLGL 777
+ +V L + L Q + +I L+ +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193
Query: 778 LLKMLNGELVWST------------RREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825
+ +L+W+T + + G M AL H +Q+L + R
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 826 ASDSGQHIQPMDEFPMDLWPSFATS------EDYYSTVAINSLMRILRDPSLASYHQKVV 879
SD+ + M+ L + + + + +
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 880 GSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939
+ P + + + + L +V ++ L
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373
Query: 940 ELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998
+ + + +G + LVQ L A D + RT + ++ +
Sbjct: 374 KATVGLIRNLALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432
Query: 999 AERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIP 1058
E T L IL + +P ++L +I+R A L L
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLN--TIPLFVQLLYSPIE-NIQRVAAGVLCELAQ 489
Query: 1059 RVQVTGHISSL--VHHLKLVLDGKNDELRKDAVDALCCLA 1096
+ I + L +L +N+ + A L ++
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1874 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.96 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.94 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.91 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.87 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.84 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.29 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.2 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.19 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.07 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.82 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.76 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.57 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.55 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.38 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.31 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.3 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.22 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 97.96 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 97.77 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.56 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.16 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.67 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 96.67 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.88 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.28 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.24 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 93.64 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 93.37 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 91.97 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.83 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 91.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 90.89 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 90.62 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 90.31 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 89.84 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 89.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 89.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 88.81 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 88.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 87.55 | |
| d2b6ca1 | 213 | Hypothetical protein EF3068 {Enterococcus faecalis | 87.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 86.85 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 86.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 85.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 84.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 84.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 83.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 83.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 82.16 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 81.67 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 80.13 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.4e-26 Score=324.74 Aligned_cols=957 Identities=15% Similarity=0.141 Sum_probs=602.3
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000196 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~ 103 (1874)
.+..+++.+.++..+.|- |...|...+......++.+... .+++.+.++++.++...|..|+.++..|+..-.
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~----~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-- 77 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER----KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-- 77 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc--
Confidence 578899999888655553 6555555443222223444343 466677788888999999999999999976532
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC------CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG------GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~------g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
...+..+.+.|...+. .++..++..++.++..+.... +..........++.+...+........|.+|+.++
T Consensus 78 -~~~~~~l~~~L~~~l~-~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l 155 (1207)
T d1u6gc_ 78 -EYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155 (1207)
T ss_dssp -HHHHHHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 2345566777766554 457888999999988776531 22334445555666666565666677899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 178 ~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
..++...|..+.++.+.+++.++..+.|+++.||.+|..|++.++..... .++..+++.+...+..+..+..+
T Consensus 156 ~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~-------~~~~~~~~~ll~~l~~~~~~~~~ 228 (1207)
T d1u6gc_ 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTT 228 (1207)
T ss_dssp HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHccCCCHHHH
Confidence 99999999999999999999999999999999999999999887654331 23344555555555444345567
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-- 335 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-- 335 (1874)
++++.+++.+.+..|..+.+++.+++..++...++.+..+|..++.++..++...+..+.+ |++.+++.++..+...
T Consensus 229 ~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~ii~~~l~~l~~dp~ 307 (1207)
T d1u6gc_ 229 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP-HVSTIINICLKYLTYDPN 307 (1207)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH-HHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh-hHHHHHHHHHHHHhcCcc
Confidence 8899999999998888888899999999999999999999999999999998877776644 7777777765544210
Q ss_pred -------------------------------------CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC
Q 000196 336 -------------------------------------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP 378 (1874)
Q Consensus 336 -------------------------------------~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~ 378 (1874)
+.|..|..+++.++...++.+.++.+.+++.+...+.+....+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~v 387 (1207)
T d1u6gc_ 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387 (1207)
T ss_dssp ----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHH
T ss_pred hhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 1245789999999888887777888888888888886655555
Q ss_pred CchhHHHHHHHHHHhCCCc-------------------hHHHHHHHHHHHhc--CCCHHH----HHHHHHHHHhCCCChH
Q 000196 379 SLEALACVGNIARAMGPVM-------------------EPHVRGLLDIMFSA--GLSTTL----VDALEQITVSIPSLLP 433 (1874)
Q Consensus 379 ~~~a~~~l~~l~~~~g~~~-------------------~p~l~~ll~~ll~~--~ls~~l----~~~l~~i~~~~p~l~~ 433 (1874)
+..++.+++.+....++.. .++++.+++.+... ..+... ...+..++..+|....
T Consensus 388 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~ 467 (1207)
T d1u6gc_ 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 467 (1207)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG
T ss_pred HHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHH
Confidence 6678899998887765421 12233344433321 122322 2344455555554322
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCCcchhhHHHH---Hh
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHDLLEFARDS---VV 508 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~~~l~~~v~~~---~~ 508 (1874)
.....++..+...+... .........|+..++.+ ......+.+++... +.
T Consensus 468 ~~l~~~~~~i~~~l~~~-------------------------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~ 522 (1207)
T d1u6gc_ 468 QHIPVLVPGIIFSLNDK-------------------------SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV 522 (1207)
T ss_dssp GGHHHHHHHHHHHTTCS-------------------------SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHH
T ss_pred HhhHhhHHHHHHHHhcc-------------------------cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHH
Confidence 22222333322221110 00111224455555544 22233444444432 34
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh-cCCChhHHHHHHHhccC
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV-ADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~-~d~~~~vR~~~l~~l~~ 587 (1874)
..+.++.+.+|..|..++..+........ ..........+..++..++.... .+.+.++|..++.+++.
T Consensus 523 ~~~~~~~~~i~~~al~~~~~l~~~l~~~~----------~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~ 592 (1207)
T d1u6gc_ 523 ACVGDPFYKITSEALLVTQQLVKVIRPLD----------QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 592 (1207)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCCSS----------SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHhhhhc----------cchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 55677788999888877766654221100 00011123445555555444332 56788899988877641
Q ss_pred -----CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcC-ccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 588 -----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA-YVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 588 -----~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~-~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
...+.+++ +..++.+...++++. .|..++..++.++..... .+.|.+...+..+...+.. .+...|..
T Consensus 593 l~~~~~~~~~~~~--~~~l~~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~--~~~~~r~~ 666 (1207)
T d1u6gc_ 593 IICNLGDNLGSDL--PNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK--NQRALKLG 666 (1207)
T ss_dssp HHHHTGGGCCTHH--HHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS--CCHHHHHH
T ss_pred HHHHhhhhhHHHH--HHHHHHHHHHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhccc--chHHHHHH
Confidence 11111222 346677777777644 688899999988776543 3457777666555554443 46778889
Q ss_pred HHHHHHHHHHhCcccccc-chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhc
Q 000196 662 SAKLLGCLIRNCERLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d 740 (1874)
++.++..++...++.+.+ .++.++..+.+.+.+. +..++..++..++.++...+....++...++|.++..+.+
T Consensus 667 al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~-----d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s 741 (1207)
T d1u6gc_ 667 TLSALDILIKNYSDSLTAAMIDAVLDELPPLISES-----DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRS 741 (1207)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTT-----CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHhccccchhHHHhhHHHhhccccccc-----cHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcC
Confidence 999999999887665544 3455555555555543 6778888888999998888888889999999999998875
Q ss_pred CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHH----HHHHHHhcccCccchhhhcccC
Q 000196 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV----LKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 741 ~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~a----l~~lg~lgaldp~~~~~~~~~~ 816 (1874)
.........++..+.......+ .+...++.++..+...+........+..+ .++++.+....+...
T Consensus 742 ~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~------- 811 (1207)
T d1u6gc_ 742 PLLQGGALSAMLDFFQALVVTG---TNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG------- 811 (1207)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTC---CTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-------
T ss_pred chhhhhhHHHHHHHHHHHHhcc---ccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhH-------
Confidence 4222222223333322222222 22233456666665554433333333333 344443321111000
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHc-cCCCchhhHHHHHHHHHHHHHHhCCCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRIL-RDPSLASYHQKVVGSLMFIFKSMGLGCVP 895 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL-~d~s~~~~~~~v~~al~~i~~~~~~~~~~ 895 (1874)
...+..++... .+.+....+..+..++..+.+..+. +
T Consensus 812 ---------------------------------------~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~---~ 849 (1207)
T d1u6gc_ 812 ---------------------------------------PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---S 849 (1207)
T ss_dssp ---------------------------------------HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCC---C
T ss_pred ---------------------------------------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc---c
Confidence 00000000001 1111112333455566666666654 3
Q ss_pred CccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH-H
Q 000196 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL-C 974 (1874)
Q Consensus 896 ~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l-~ 974 (1874)
..+.+.+.++..+.+.++.+|..+..++|.+.. .+...|+|.++..+. ... ..+..++..+..+ .
T Consensus 850 ~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~---~~~~~~lp~il~~l~----~~~-------~~~~~ll~al~ei~~ 915 (1207)
T d1u6gc_ 850 GQLELKSVILEAFSSPSEEVKSAASYALGSISV---GNLPEYLPFVLQEIT----SQP-------KRQYLLLHSLKEIIS 915 (1207)
T ss_dssp SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHH----SCG-------GGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---hhHHHHhHHHHHHHh----cCc-------hHHHHHHHHHHHHHH
Confidence 556777888888888888899888888887653 344566666655543 211 1111334444333 2
Q ss_pred HHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHH
Q 000196 975 LALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLT 1054 (1874)
Q Consensus 975 ~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~ 1054 (1874)
.+....+.+|++.+++.++..+.+.+. ..|..+. .|+..+.. -+...++|.+.+.+..+ +..+|..++.+++
T Consensus 916 ~~~~~~~~~~~~~i~~~L~~~~~~~~~-~vr~~~a---~~lg~L~~---~~~~~~lp~L~~~l~~~-~~~~r~~ai~~l~ 987 (1207)
T d1u6gc_ 916 SASVVGLKPYVENIWALLLKHCECAEE-GTRNVVA---ECLGKLTL---IDPETLLPRLKGYLISG-SSYARSSVVTAVK 987 (1207)
T ss_dssp SSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHH---HHHHHHHH---SSGGGTHHHHTTTSSSS-CHHHHHHHHHHTG
T ss_pred hcchhhhHHHHHHHHHHHHHHhCCCcH-HHHHHHH---HHHHHHHh---cCHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 333456888999999988887765332 2233333 33333321 12234678888887654 6789999999999
Q ss_pred hhcccc--cccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhC
Q 000196 1055 RLIPRV--QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKH 1117 (1874)
Q Consensus 1055 ~l~~~~--~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~ 1117 (1874)
.+.... .+.+|+..++..++..+++++.++|..|+.+|..++.+.+.-..+|+|.+.+.+...
T Consensus 988 ~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~ 1052 (1207)
T d1u6gc_ 988 FTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNE 1052 (1207)
T ss_dssp GGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 987763 355788888888899999999999999999999999998888889999999988763
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7e-26 Score=324.39 Aligned_cols=916 Identities=14% Similarity=0.144 Sum_probs=561.8
Q ss_pred HHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCc
Q 000196 67 MDQLYDRISGLL-ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM 145 (1874)
Q Consensus 67 ~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~ 145 (1874)
...+...+...+ +..+...|.+++..+..++...+....+........+...+. +.+..|++.|..+++.++...+.
T Consensus 128 ~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~-~~~~~vR~~A~~~l~~l~~~~~~- 205 (1207)
T d1u6gc_ 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN- 205 (1207)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHCCH-
Confidence 344444444444 346677888889888888776533334444555555555554 45789999999999999886332
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
+.+...++.+++.+..+.....|.+++.+++.++...|..+.+|++.+++.++..+.+.++.+|+.+..++..+....
T Consensus 206 --~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~ 283 (1207)
T d1u6gc_ 206 --IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 283 (1207)
T ss_dssp ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence 222333455555555455556778889999999999999999999999999999999999999999999998876543
Q ss_pred hhcchhhHHHHHHHHHHHHHhhcc------------------------------------CCCChhHHHHHHHHHHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLG------------------------------------RNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~------------------------------------~~~~~~~~~~al~~l~~ll~ 269 (1874)
.. ....++..+++.+...+. +...|.+|.+++.+++.++.
T Consensus 284 ~~----~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~ 359 (1207)
T d1u6gc_ 284 PK----EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 359 (1207)
T ss_dssp TC----CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred hh----hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHH
Confidence 31 112233333333322111 11248899999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh------------------hhHHHHHHHHHHHHHHHh
Q 000196 270 NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR------------------DRFVTNYLKICMNHILTV 331 (1874)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~------------------~~f~~~yl~~~~~~Ll~~ 331 (1874)
..++.+.+++.++++.++..+.++++.||..++.++..+..... ......+++.+++.+...
T Consensus 360 ~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~ 439 (1207)
T d1u6gc_ 360 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 439 (1207)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHH
Confidence 88888888888999999988899999999999988887753221 112233556667777766
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--CchhHHHHHHHHHHhCC-CchHHHHHHHH
Q 000196 332 LRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1874)
Q Consensus 332 L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~~a~~~l~~l~~~~g~-~~~p~l~~ll~ 406 (1874)
++... .|..++.+++.++...+..+.+|++.+++.+...+.+..... +..++.+++.+....++ .+.|++..+++
T Consensus 440 l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~ 519 (1207)
T d1u6gc_ 440 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 519 (1207)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhh
Confidence 65443 578999999999999998889999999999999886654332 34678888888887776 58889988888
Q ss_pred HHHhcC--CCHHH----HHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 407 IMFSAG--LSTTL----VDALEQITVSIPS--------LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 407 ~ll~~~--ls~~l----~~~l~~i~~~~p~--------l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
.++.+- ..... ..++..+...+.+ ..+.+ ..++..+...+..
T Consensus 520 ~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~~~~~l~~----------------------- 575 (1207)
T d1u6gc_ 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI-KDLFTCTIKRLKA----------------------- 575 (1207)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH-HHHHHHHHHHHSC-----------------------
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHH-HHHHHHHHHHHHh-----------------------
Confidence 777542 12211 2233333332221 11111 1122221111100
Q ss_pred ccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhcc-CCChHHHHHHHHHhHHhhhccCCCCccccccccccccc
Q 000196 473 VSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT 550 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~ 550 (1874)
...+.+....|+.+++.+. -.|..+.+.+..++..+++ -.++..|..|+.++..+......
T Consensus 576 --~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~--------------- 638 (1207)
T d1u6gc_ 576 --ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK--------------- 638 (1207)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC---------------
T ss_pred --cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccc---------------
Confidence 0112234455677776651 1133344445554433332 12456788888777666532211
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHh
Q 000196 551 GGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGR 625 (1874)
Q Consensus 551 ~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-----~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~ 625 (1874)
......+..+++.+.. ...++++.+|.+++.+|.. .....+.. ...++..+...++|++..++..++.+++.
T Consensus 639 -~~~~~~l~~~~~~l~~-~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~-~~~~l~~l~~ll~~~d~~v~~~~l~~l~~ 715 (1207)
T d1u6gc_ 639 -IDLRPVLGEGVPILAS-FLRKNQRALKLGTLSALDILIKNYSDSLTAAM-IDAVLDELPPLISESDMHVSQMAISFLTT 715 (1207)
T ss_dssp -CCCHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHH-HHHHHTTCGGGSCTTCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHhccccchhHH-HhhHHHhhccccccccHHHHHHHHHHHHH
Confidence 0123456666665544 4678899999998887741 11111111 01233444467789999999999999999
Q ss_pred hhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHH-HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhH
Q 000196 626 LSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA-KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGI 704 (1874)
Q Consensus 626 l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~-~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v 704 (1874)
+.+..|....+.....+..++..+... ........+. ..+..+..... -......++..+.....+..........
T Consensus 716 l~~~~~~~~~~~~~~il~~l~~~~~s~-l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 792 (1207)
T d1u6gc_ 716 LAKVYPSSLSKISGSILNELIGLVRSP-LLQGGALSAMLDFFQALVVTGT--NNLGYMDLLRMLTGPVYSQSTALTHKQS 792 (1207)
T ss_dssp HTTSCGGGGGGTTTTTHHHHHHHHTCT-TCCHHHHHHHHHHHHHHHTTCC--TTCSHHHHHHHHSTTTTTC----CCHHH
T ss_pred HHhhcchhhhhHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHHhccc--cccchHHHHHHHHHhhccccchhhHHHH
Confidence 999998876666555555555444332 1111111211 22222222111 1223344444444333322111122334
Q ss_pred HHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC
Q 000196 705 ISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG 784 (1874)
Q Consensus 705 ~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~ 784 (1874)
...+..+++.+....+....+.+..++.. ..........|..|+.+||.+....+.. ..+++.+.++..+.+
T Consensus 793 ~~~~~~~i~~l~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~al~~Lge~~~~~~~~-----~~~~l~~~l~~~l~~ 864 (1207)
T d1u6gc_ 793 YYSIAKCVAALTRACPKEGPAVVGQFIQD---VKNSRSTDSIRLLALLSLGEVGHHIDLS-----GQLELKSVILEAFSS 864 (1207)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHTTTTTT---TTTTTCCHHHHHHHHHHHHHHHHHSCCC-----SCTHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhCC
Confidence 45566777777777766544433333221 1222334567888999999988776542 235788888888875
Q ss_pred CCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHH
Q 000196 785 ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR 864 (1874)
Q Consensus 785 ~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~ 864 (1874)
+ ++++|.+|..++|.++.-.+ ...++.+++
T Consensus 865 ~-~~~vr~aAa~aLg~l~~~~~-------------------------------------------------~~~lp~il~ 894 (1207)
T d1u6gc_ 865 P-SEEVKSAASYALGSISVGNL-------------------------------------------------PEYLPFVLQ 894 (1207)
T ss_dssp S-CHHHHHHHHHHHHHHHHHTH-------------------------------------------------HHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhhH-------------------------------------------------HHHhHHHHH
Confidence 4 78999999999998763111 122334445
Q ss_pred HccCCCchhhHHHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHH
Q 000196 865 ILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFS 943 (1874)
Q Consensus 865 iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~ 943 (1874)
.+..... .....+.++..++...+.. ..+|.+.+++.++..+...++..|..+..++|.++..-. ..+++
T Consensus 895 ~l~~~~~--~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-------~~~lp 965 (1207)
T d1u6gc_ 895 EITSQPK--RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-------ETLLP 965 (1207)
T ss_dssp HHHSCGG--GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-------GGTHH
T ss_pred HHhcCch--HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-------HHHHH
Confidence 5544322 2335677777777766543 245667777777666666667788888888887763211 22334
Q ss_pred HHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHh-cch
Q 000196 944 LISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG-GTL 1022 (1874)
Q Consensus 944 ~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g-~~~ 1022 (1874)
.+.+.+...+ +.....++.++..+....+..+.+|+..++|.++..+++++... |..+...+.++..-. ..+
T Consensus 966 ~L~~~l~~~~------~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~v-R~~al~~l~~~~~~~p~li 1038 (1207)
T d1u6gc_ 966 RLKGYLISGS------SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNV-RRVALVTFNSAAHNKPSLI 1038 (1207)
T ss_dssp HHTTTSSSSC------HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHH-HHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHhCCCC------HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHhChHHH
Confidence 4444444332 11122455555555555677889999999999999998654221 333333444333333 335
Q ss_pred hhhhhhhHHHHHHhhcC-----------------CCcHHHHHHHHHHHHhhccc----ccccchhHhHHHHHHHHhCCCC
Q 000196 1023 DEHMHLLLPALIRLFKV-----------------DAPVDIRRAAIETLTRLIPR----VQVTGHISSLVHHLKLVLDGKN 1081 (1874)
Q Consensus 1023 ~~~~~~ilp~l~~~~~~-----------------~~~~~vr~~ai~~l~~l~~~----~~~~~~~~~ii~~l~~~l~~~~ 1081 (1874)
.+|+..++|.+..-... +.-.++|+.|.+++..+... .++.+|+.++ ...|.+ +
T Consensus 1039 ~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~----~~gl~d-~ 1113 (1207)
T d1u6gc_ 1039 RDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHV----EDGLKD-H 1113 (1207)
T ss_dssp GGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHH----HHTTSS-C
T ss_pred HHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHH----Hhcccc-h
Confidence 68888888888764321 12368999999999988754 3445555554 455665 4
Q ss_pred HHHHHHHHHHHHHHHHHhc----cccccchhhHHHHHHh
Q 000196 1082 DELRKDAVDALCCLAHALG----EDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1082 ~~l~~~al~~L~~l~~~~g----~~f~~~ip~i~~~l~~ 1116 (1874)
.++|-.+...|..++.... ..+-.++|.+.+++..
T Consensus 1114 ~di~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 1152 (1207)
T d1u6gc_ 1114 YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTT 1152 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999998888755 3344455666666653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-29 Score=347.55 Aligned_cols=665 Identities=14% Similarity=0.155 Sum_probs=452.1
Q ss_pred HHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000196 23 LDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
|+++..|++.+.+.+. .+++|...|..++++....+.++...+..+.+...+.+.+++++...|.+++.+++.++....
T Consensus 125 pell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~ 204 (888)
T d1qbkb_ 125 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 204 (888)
T ss_dssp TTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4566666666665543 444566667777766555555555556666778888888888888899999999999876542
Q ss_pred CcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000196 102 GENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la 181 (1874)
......+..+.+.+..... ..+.++++.++++++.++.........+++..++.++..+ .+.++..|..|+.+|..++
T Consensus 205 ~~~~~~~~~~l~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~-~~~~e~v~~~a~ef~~~~~ 282 (888)
T d1qbkb_ 205 QALMLHIDSFTENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT-QDQDENVALEACEFWLTLA 282 (888)
T ss_dssp STTCSHHHHCSHHHHTTSS-CCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTT-TSSCHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHH
Confidence 2222233333333333332 4567899999999999887543333223333333333333 3456778889999988887
Q ss_pred hh--cCccchhchHHHHHHHHHhhcCCch---------------------------------------------------
Q 000196 182 EN--ASTVFNVHVAEFVDAIWVALRDPTL--------------------------------------------------- 208 (1874)
Q Consensus 182 ~~--~p~~~~~~l~~il~~i~~~l~D~~~--------------------------------------------------- 208 (1874)
+. ....+.++++.+++.+...+.+...
T Consensus 283 e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (888)
T d1qbkb_ 283 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEI 362 (888)
T ss_dssp SGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTT
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhh
Confidence 64 4566778888887776655433222
Q ss_pred ---------hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH
Q 000196 209 ---------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY 279 (1874)
Q Consensus 209 ---------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~ 279 (1874)
.+|.+|..+|..+..... ...+..+++-+...+.++ +|..|++|+.++|.+.+++.+.+.+++
T Consensus 363 ~~~~~~~~~~~r~~a~~~L~~l~~~~~-------~~il~~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l 434 (888)
T d1qbkb_ 363 DDDDTISDWNLRKCSAAALDVLANVYR-------DELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL 434 (888)
T ss_dssp CCCSTTSCCSSHHHHHHHSTTTTTTCC-------SSSHHHHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTH
T ss_pred hhhhhhhhhhHHHHHHHHHhhHhhhhH-------HHHHHHHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccc
Confidence 257777766654433221 123566777777778776 599999999999999998888899999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhh
Q 000196 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELF 357 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~ 357 (1874)
.++++.++..+++.++.||.++++++++++.+......+.|+..+++.++..+.++. .|..|+.+++.++...+..+.
T Consensus 435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~ 514 (888)
T d1qbkb_ 435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV 514 (888)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999877666666788999999998887654 467999999999999999999
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHH
Q 000196 358 HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVM--EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTI 435 (1874)
Q Consensus 358 p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~--~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i 435 (1874)
||++.+++.+...+.....+....++.|++.++..+|+.+ .+++..+++.++..-
T Consensus 515 p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~----------------------- 571 (888)
T d1qbkb_ 515 PYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW----------------------- 571 (888)
T ss_dssp GGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHH-----------------------
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH-----------------------
Confidence 9999999999999866544334567899999999999865 457777776654310
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCC
Q 000196 436 QDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDE 514 (1874)
Q Consensus 436 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~~~~l~~~v~~~~~~~l~~~ 514 (1874)
. . . . + ++.....++++++.+ ...+..+.++...++...+.--
T Consensus 572 --------~----~--~-----------------~---~---~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l 614 (888)
T d1qbkb_ 572 --------N----M--L-----------------K---D---EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614 (888)
T ss_dssp --------T----T--S-----------------C---T---TCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHH
T ss_pred --------H----h--c-----------------c---c---chHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHH
Confidence 0 0 0 0 0 000111223333322 1112333344433322111100
Q ss_pred ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh
Q 000196 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594 (1874)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~ 594 (1874)
...+-. ........... . . .....+...+. +...+.+.++ ..|.++
T Consensus 615 ~~~l~~----~~~~~~~~~~~----------~--~---~~~~~~~~~l~-------------~l~~l~~~l~--~~~~~~ 660 (888)
T d1qbkb_ 615 QKTLAQ----AMLNNAQPDQY----------E--A---PDKDFMIVALD-------------LLSGLAEGLG--GNIEQL 660 (888)
T ss_dssp HHHHHH----HHHHHHCTTTS----------C--C---CCTHHHHHHHH-------------HHHHHHHHHT--TTTHHH
T ss_pred HHHHHH----HHHHhcccccc----------c--c---hhHHHHHHHHH-------------HHHHHHHHhh--hhhhhh
Confidence 000000 00000000000 0 0 00011111100 1112233343 355565
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+.+..+++.+..+++|.+++||+.|+.++|+++..++..+.|++..++..++..+.+. ....+..|++++|+++.+.+
T Consensus 661 ~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~--~~~v~~~a~~~ig~ia~~~~ 738 (888)
T d1qbkb_ 661 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMG 738 (888)
T ss_dssp HHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGG--GHHHHHHHHHHHHHHHHHTG
T ss_pred hhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHH
Confidence 5555678888999999999999999999999999999999999998887777767553 56788999999999999999
Q ss_pred cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHH
Q 000196 675 RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTL 754 (1874)
Q Consensus 675 ~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~L 754 (1874)
+.+.||++.+++.|++.++++. ....+..+++.|+|.++...|+.+.||++++++.++..|.+..+.+.++.|..+|
T Consensus 739 ~~~~py~~~il~~L~~il~~~~---~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~ 815 (888)
T d1qbkb_ 739 IEMQPYIPMVLHQLVEIINRPN---TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGI 815 (888)
T ss_dssp GGGGGGSHHHHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHcCCC---ccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 9999999999999999998752 3667889999999999999999999999999999999998877778899999999
Q ss_pred HHHHhhccccccccccchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Q 000196 755 GQVVQSTGYVITPYNEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 755 g~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~-~~~~~vr~~al~~lg~l 801 (1874)
+.+++.....+. +.+...+-.+.+. ...++++.+..++|+..
T Consensus 816 ~~~i~~~p~~~~-----~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 858 (888)
T d1qbkb_ 816 CTMISVNPSGVI-----QDFIFFCDAVASWINPKDDLRDMFCKILHGF 858 (888)
T ss_dssp HHHHHHCGGGTG-----GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999987655443 3333333333322 23578888888877653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.1e-28 Score=336.27 Aligned_cols=825 Identities=13% Similarity=0.121 Sum_probs=511.7
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHH-HHhhc
Q 000196 108 VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKE-MAENA 184 (1874)
Q Consensus 108 ~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~r~aA~~~l~~-la~~~ 184 (1874)
+.++...|.... +.|.++++.|.+.|.++...++ +... +...+. ++.+...|.+|...|+. +..+.
T Consensus 10 l~ql~~~L~~~~--s~d~~~r~~A~~~L~~~~~~p~-----~~~~----L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w 78 (888)
T d1qbkb_ 10 LQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQYPD-----FNNY----LIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 78 (888)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHTTSTTTSTTSTT-----TTTC----TTSSSTTTSCSTTTHHHHTTGGGGGTHHHHT
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCC-----HHHH----HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 344445555544 2467889988888777644322 1110 111122 22233456666666654 44444
Q ss_pred CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 185 STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 185 p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
...=......|.+.++.+|+|+++.||..++.+++.+..... . ..| +.+++.+.+.+.+++ ..++++|+.+|
T Consensus 79 ~~~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~---~---~~W-pell~~L~~~l~s~~-~~~~~~al~~L 150 (888)
T d1qbkb_ 79 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE---L---QNW-PDLLPKLCSLLDSED-YNTCEGAFGAL 150 (888)
T ss_dssp TCSTTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTS---S---CSS-TTTSTTTTTSSTGGG-SSCSSSSSTTT
T ss_pred ccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---c---cch-HHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 433334666778889999999999999999998887654211 1 112 345666666666543 56788999999
Q ss_pred HHHHHcchhhhH-----HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CC
Q 000196 265 GELLRNTGEFMM-----SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AE 337 (1874)
Q Consensus 265 ~~ll~~~~~~~~-----~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~ 337 (1874)
+.+.+..++.+. ..+..++..++...++.++.+|..++.++..+....+..+. .+++.+++.+...+..+ ..
T Consensus 151 ~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~v 229 (888)
T d1qbkb_ 151 QKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFTENLFALAGDEEPEV 229 (888)
T ss_dssp HHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTC-SHHHHCSHHHHTTSSCCCSSS
T ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHhcCCcchHH
Confidence 988874333222 22334667788888888999999999999888766665443 36678888887776544 35
Q ss_pred cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh--CCCchHHHHHHHHHHHhcCCC-
Q 000196 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM--GPVMEPHVRGLLDIMFSAGLS- 414 (1874)
Q Consensus 338 R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~--g~~~~p~l~~ll~~ll~~~ls- 414 (1874)
|..++.+++.++...++.+.||++.+++.+...+.+...+++..++++|..+++.. ...+.++++.+++.+......
T Consensus 230 r~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~ 309 (888)
T d1qbkb_ 230 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYS 309 (888)
T ss_dssp TTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 88999999999988888889999998887776665544333446777776665432 234667777777766543211
Q ss_pred -HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000196 415 -TTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1874)
Q Consensus 415 -~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1874)
.+... +.. ...... . ..+......+....................+.. ..+.
T Consensus 310 ~~~~~~-~~~---~~~~~~-~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~- 362 (888)
T d1qbkb_ 310 DIDIIL-LKG---DVEEDE-T-------------IPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDD--------DDEI- 362 (888)
T ss_dssp STTHHH-HTT---TSSCCT-T-------------SCCCGGGCCCCCCCCCCCCCCCTTC-----CHH--------HHTT-
T ss_pred hHHHHH-Hhh---hhhhhh-h-------------hhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccc--------hhhh-
Confidence 10100 000 000000 0 000000000000000000000000000000000 0000
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
........+.+|++|+.++..+...... .++..+++ ++...+.++
T Consensus 363 --------------~~~~~~~~~~~r~~a~~~L~~l~~~~~~--------------------~il~~~l~-~l~~~l~s~ 407 (888)
T d1qbkb_ 363 --------------DDDDTISDWNLRKCSAAALDVLANVYRD--------------------ELLPHILP-LLKELLFHH 407 (888)
T ss_dssp --------------CCCSTTSCCSSHHHHHHHSTTTTTTCCS--------------------SSHHHHHH-HHHHTTTSS
T ss_pred --------------hhhhhhhhhhHHHHHHHHHhhHhhhhHH--------------------HHHHHHHH-HHHHhhccc
Confidence 0001112345666666555444432211 11222332 233345667
Q ss_pred ChhHHHHHHHhccC--CC---CcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc-hHHHHHHHHHHH
Q 000196 574 DVTVRHSIFSSLYG--NR---GFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-PALRRHLIQLLT 647 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~--~~---~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p~l~~~l~~~l~ 647 (1874)
++.+|.+++.+|+. .. .+.+++ +++++.++..++|+++.||..|+.++|++++..+.... +++...+..++.
T Consensus 408 ~~~~reaa~~alg~i~eg~~~~~~~~l--~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~ 485 (888)
T d1qbkb_ 408 EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 485 (888)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHTTTH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhcccc--hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 77777776665541 01 112333 46788899999999999999999999999886543332 445555555666
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccch--hh
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM--RQ 725 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~--~~ 725 (1874)
.+.+ .+++.++.|+.+|..+++.++..+.||++.+++.++..+.+. .......+..+++.++...|..+ .+
T Consensus 486 ~l~d--~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-----~~~~~~~~~~al~~l~~~~~~~~~~~~ 558 (888)
T d1qbkb_ 486 RILD--SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-----QHKNLLILYDAIGTLADSVGHHLNKPE 558 (888)
T ss_dssp HHSS--SCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTC-----CHHHHHHHHHHHHHHHHHHGGGGCSHH
T ss_pred HhcC--CCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHhhhccccchH
Confidence 6654 468889999999999999999999999999999999988764 45566677889999998877665 56
Q ss_pred cHHhHHHHHHHHHhcCc-chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccc
Q 000196 726 YISELMPLIVEALLDGA-AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGAL 804 (1874)
Q Consensus 726 ~~~~llp~l~~~l~d~~-~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgal 804 (1874)
++..++|.+.+...... +...+...+.+++.++...|..+.||. +++++.+++.+... +.... ... .
T Consensus 559 ~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~----l~~~~----~~~--~ 626 (888)
T d1qbkb_ 559 YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC--EPVYQRCVNLVQKT----LAQAM----LNN--A 626 (888)
T ss_dssp HHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH--HHHHHHHHHHHHHH----HHHHH----HHH--H
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH--HHHHHHHHHHHHHH----HHHHH----HHh--c
Confidence 88899999988776422 223455678889999888887777764 34555555544211 10000 000 0
Q ss_pred CccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHH
Q 000196 805 DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMF 884 (1874)
Q Consensus 805 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~ 884 (1874)
.+. .. + .... . ....+...+..
T Consensus 627 ~~~---------------------~~------~----------~~~~----~-----------------~~~~~l~~l~~ 648 (888)
T d1qbkb_ 627 QPD---------------------QY------E----------APDK----D-----------------FMIVALDLLSG 648 (888)
T ss_dssp CTT---------------------TS------C----------CCCT----H-----------------HHHHHHHHHHH
T ss_pred ccc---------------------cc------c----------chhH----H-----------------HHHHHHHHHHH
Confidence 000 00 0 0000 1 11233445556
Q ss_pred HHHHhCCCCCCCcc--chhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccccccc
Q 000196 885 IFKSMGLGCVPYLP--KVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYR 962 (1874)
Q Consensus 885 i~~~~~~~~~~~l~--~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~ 962 (1874)
+++.+|..+.+++. .+++.++..+++.++.+|+.++..+|.++..+++++.||++.+++.+.+.+..... ++
T Consensus 649 l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~-----~v- 722 (888)
T d1qbkb_ 649 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI-----SV- 722 (888)
T ss_dssp HHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGH-----HH-
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCH-----HH-
Confidence 66777777666653 47888999998888899999999999999999999999999999999988865431 11
Q ss_pred chhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHh----cchhhhhhhhHHHHHHhhc
Q 000196 963 GLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG----GTLDEHMHLLLPALIRLFK 1038 (1874)
Q Consensus 963 ~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g----~~~~~~~~~ilp~l~~~~~ 1038 (1874)
...++.+++.++..++++|+||++.+++.+++++++++. .+.....+..|+..+| ..+.+|+..++|..|+.+.
T Consensus 723 ~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~--~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~ 800 (888)
T d1qbkb_ 723 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT--PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 800 (888)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTC--CHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhc
Confidence 225778889999999999999999999999999976432 3344444555555443 4566788889999999886
Q ss_pred CCCcHHHHHHHHHHHHhhcccc--cccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000196 1039 VDAPVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102 (1874)
Q Consensus 1039 ~~~~~~vr~~ai~~l~~l~~~~--~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~ 1102 (1874)
.-.+.+-|..|...+..++... .+.+++..++..+... ....++++.....+|..+...+|.+
T Consensus 801 ~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 865 (888)
T d1qbkb_ 801 NIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW-INPKDDLRDMFCKILHGFKNQVGDE 865 (888)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 5445566889999999887641 2334444444433321 2245789999999999888888754
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.5e-21 Score=264.41 Aligned_cols=795 Identities=13% Similarity=0.138 Sum_probs=485.1
Q ss_pred CcHHHHHHHHHH-HcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc--CCChhhhhhHHHHHhHh
Q 000196 21 GSLDALNRILAD-LCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE--SNDAAENLGALRAIDEL 96 (1874)
Q Consensus 21 ~~~~~~~~~~~~-L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~l 96 (1874)
|+.+.+.+++.+ +.|++...++ |...|.. +..+++..|+..+. +.+. +.+...|..|+..+...
T Consensus 1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~--------~~~~~~~~~~~~l~----~il~~~~~~~~~r~~A~i~lkn~ 68 (861)
T d2bpta1 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKK--------LSNDNFLQFAGLSS----QVLIDENTKLEGRILAALTLKNE 68 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHH--------HHHHCHHHHHHHHH----HHHTCTTSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------HHhcCchHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHH
Confidence 677888898877 5688766665 5444433 33333344443333 3332 34566777676667666
Q ss_pred hccccCc-chhHHH------------HHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhh
Q 000196 97 IDVALGE-NASKVS------------KFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWL 161 (1874)
Q Consensus 97 i~~~~~~-~~~~~~------------~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l 161 (1874)
+...... ...... .+-+.+...+. ..+..++..++.+++.++.. +...|+++++. +++.+
T Consensus 69 i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~----L~~~~ 143 (861)
T d2bpta1 69 LVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKI----MVDNT 143 (861)
T ss_dssp TCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH----HHHHT
T ss_pred hhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHH----HHHHh
Confidence 5432111 011111 11123333443 45789999999999999875 33357766554 44555
Q ss_pred cCCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000196 162 RGDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALR--DPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1874)
Q Consensus 162 ~~~~~~~~r~aA~~~l~~la~~~p~~---~~~~l~~il~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1874)
.++..+..|.+|+.+++.+++..+.. +.+.+..+++.++.++. +++..||.+|..++..++..+.... .....
T Consensus 144 ~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~ 221 (861)
T d2bpta1 144 GAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM--EREGE 221 (861)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHH--TSHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhH--Hhhhh
Confidence 66666778999999999999887654 45677778888888875 5678999999999988776554211 11223
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 237 ~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l-l~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
...+++.+...+.++ +++++.+++.++..++...++++.+++.+++..+ .....+.++.+|..++..+..++.....
T Consensus 222 ~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~- 299 (861)
T d2bpta1 222 RNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID- 299 (861)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHhHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-
Confidence 444555555666665 4788999999999999988888899888866544 4445678889999988888777643111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCC-------chhHHHHHH
Q 000196 316 FVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS-------LEALACVGN 388 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~-------~~a~~~l~~ 388 (1874)
+ ...... +..... .......++++.+++.+.+.+........ ..+..|+..
T Consensus 300 ----~----~~~~~~-~~~~~~-------------~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 357 (861)
T d2bpta1 300 ----I----AYELAQ-FPQSPL-------------QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp ----H----HHHHHH-CTTCSC-------------CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred ----H----HHHHHh-hhhhHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 0 000111 111000 00011223445555555555533221110 112233333
Q ss_pred HHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccC
Q 000196 389 IARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMN 468 (1874)
Q Consensus 389 l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 468 (1874)
++...|..+
T Consensus 358 ~~~~~~~~~----------------------------------------------------------------------- 366 (861)
T d2bpta1 358 FAQNCGNHI----------------------------------------------------------------------- 366 (861)
T ss_dssp HHHHHGGGG-----------------------------------------------------------------------
T ss_pred HHhhcchhh-----------------------------------------------------------------------
Confidence 333222211
Q ss_pred CCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccc
Q 000196 469 IPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSN 548 (1874)
Q Consensus 469 ~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~ 548 (1874)
.+.+...+...+.++++..|.+|..+++.+.....
T Consensus 367 -------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-------------- 401 (861)
T d2bpta1 367 -------------------------------LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-------------- 401 (861)
T ss_dssp -------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--------------
T ss_pred -------------------------------hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc--------------
Confidence 12222233344556677888877766655532100
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhc
Q 000196 549 RTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628 (1874)
Q Consensus 549 ~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~ 628 (1874)
...... ++ +++++.+...+.|+++.||..++.+++++++
T Consensus 402 ------~~~~~~---------------------------------~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T d2bpta1 402 ------KVQRTY---------------------------------YV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp ------HHHHHH---------------------------------HH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ------hhhHHH---------------------------------HH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 000111 11 2346666777889999999999999999988
Q ss_pred CCcCccc--hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC----ccccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 629 KNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC----ERLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 629 ~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~----~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
..+..+. ..+...+..++..+ . ..+..+..++..+..++... .....++...++..++...... +...
T Consensus 441 ~~~~~~~~~~~~~~ll~~l~~~~-~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 514 (861)
T d2bpta1 441 SVAESIDPQQHLPGVVQACLIGL-Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI---DNEF 514 (861)
T ss_dssp HHGGGSCTTTTHHHHHHHHHHHH-T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS---CCGG
T ss_pred HhchhhhhHHhhhhhhHHHHhcc-c--cChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhh---hhhH
Confidence 7654432 23444333333333 2 34667777888877777653 3446677778888777766543 2366
Q ss_pred hHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcch---hhHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 000196 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV---TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~---~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1874)
.++..++.+++.++...++.+.+++..+.+.+...+...-.. .........+. .+...+.
T Consensus 515 ~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~l~~~~~ 577 (861)
T d2bpta1 515 NARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ-----------------ELQSNIL 577 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHH-----------------HHHHHHH
Confidence 788888999999999999999999999999888777531100 00000000000 1111111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHH
Q 000196 780 KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAI 859 (1874)
Q Consensus 780 ~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi 859 (1874)
..+. ..+..++ .. . ..|...++
T Consensus 578 ~~l~------------~~~~~~~---~~------------------------------------------~-~~~~~~l~ 599 (861)
T d2bpta1 578 TVLA------------AVIRKSP---SS------------------------------------------V-EPVADMLM 599 (861)
T ss_dssp HHHH------------HHHHHCG---GG------------------------------------------T-GGGHHHHH
T ss_pred HHHH------------HHHhcch---hh------------------------------------------H-HHHHHHHH
Confidence 1110 0000000 00 0 01234566
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHH
Q 000196 860 NSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQ 939 (1874)
Q Consensus 860 ~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~ 939 (1874)
+.+++++.+.+....+..++.++..++..+|..+.||++.++|.++..+++.++.++..++..++.++...+..+.||++
T Consensus 600 ~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~ 679 (861)
T d2bpta1 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHH
Confidence 77777777665556677788899999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh-------hHHHHH
Q 000196 940 ELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT-------YVLDIL 1012 (1874)
Q Consensus 940 ~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~-------~~~~il 1012 (1874)
++++.+.+.|....... .....++.+++.++..+|..|.||++.++|.+.+.+.......+.. ....++
T Consensus 680 ~i~~~L~~~l~~~~~~~----~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 755 (861)
T d2bpta1 680 AMMNVLAQMISNPNARR----ELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVL 755 (861)
T ss_dssp HHHHHHHHHHHCTTCCT----THHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHH
Confidence 99999999997654211 1223689999999999999999999999999999886422111111 112233
Q ss_pred HHHHHH-------hcchhhhhhhhHHHHHHhhcCC---CcHHHHHHHHHHHHhhcccc---cccchh-HhHHHH-HHHHh
Q 000196 1013 HTLEVF-------GGTLDEHMHLLLPALIRLFKVD---APVDIRRAAIETLTRLIPRV---QVTGHI-SSLVHH-LKLVL 1077 (1874)
Q Consensus 1013 ~~l~~~-------g~~~~~~~~~ilp~l~~~~~~~---~~~~vr~~ai~~l~~l~~~~---~~~~~~-~~ii~~-l~~~l 1077 (1874)
.++..+ +..+.+|+..+++.+..++... ...++++.++.++|+++... .+.++. ...+.. +.+..
T Consensus 756 ~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 835 (861)
T d2bpta1 756 DAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHH
Confidence 333322 2235566666666666666432 46788999999999987642 223322 223333 33444
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHhc
Q 000196 1078 DGK--NDELRKDAVDALCCLAHALG 1100 (1874)
Q Consensus 1078 ~~~--~~~l~~~al~~L~~l~~~~g 1100 (1874)
.+. +...|..|-.+.-.+-.++|
T Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (861)
T d2bpta1 836 SGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hCcchhHHHHHHHHHHHHHHHHHhC
Confidence 433 45677777777666655554
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=5e-20 Score=252.77 Aligned_cols=724 Identities=13% Similarity=0.167 Sum_probs=464.9
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccC-CCChhHHHHHHHHHHHHHHcc
Q 000196 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGR-NAPVHSIHGSLLAVGELLRNT 271 (1874)
Q Consensus 193 ~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~al~~l~~ll~~~ 271 (1874)
.++...+...+.+|++.+|..|.+.|.++.+. ..+.++..+ ...+.+ +.+.++|+.|+..|...+...
T Consensus 4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-------~~~~~~~~l----~~il~~~~~~~~~r~~A~i~lkn~i~~~ 72 (861)
T d2bpta1 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSND-------NFLQFAGLS----SQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-------CHHHHHHHH----HHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------CchHHHHHH----HHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence 35666666778899999999999988765321 112333333 333333 224678888888776655432
Q ss_pred hhh------------hHH-HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--
Q 000196 272 GEF------------MMS-RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA-- 336 (1874)
Q Consensus 272 ~~~------------~~~-~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~-- 336 (1874)
+.. +.+ ....+-..++..+.+.++.||..+..+++.++... |-+..|+++++.|...+.+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~---~p~~~wpeli~~L~~~~~s~~~~ 149 (861)
T d2bpta1 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE---LPHGAWPELMKIMVDNTGAEQPE 149 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---GGGTCCHHHHHHHHHHTSTTSCH
T ss_pred cchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHhcCCCcH
Confidence 211 112 22234456777778889999999999999988643 222346899999999887643
Q ss_pred -CcchHHHHHHHHHhhchhhhhhhhHH---HHHHHHHhhcCCCCC--CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000196 337 -ERDSGFIALGEMAGALDGELFHYLPT---ITSHLREAIAPRRGK--PSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1874)
Q Consensus 337 -~R~~a~~alg~la~~v~~~~~p~l~~---i~~~l~~~L~~~~~~--~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~ 410 (1874)
.|..|+.+++.++...+..+.++.+. ++..+...+...... .+..++.|++.+...++..+.
T Consensus 150 ~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~------------ 217 (861)
T d2bpta1 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME------------ 217 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHH------------
Confidence 36789999999998887765544443 344444443222111 112333333332221110000
Q ss_pred cCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhc
Q 000196 411 AGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLA 490 (1874)
Q Consensus 411 ~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~ 490 (1874)
T Consensus 218 -------------------------------------------------------------------------------- 217 (861)
T d2bpta1 218 -------------------------------------------------------------------------------- 217 (861)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh
Q 000196 491 RFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV 570 (1874)
Q Consensus 491 ~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~ 570 (1874)
.....+.+...+...+.++++++|..|..++..++...+. ...+.+..++..++....
T Consensus 218 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~-----------------~~~~~l~~~l~~l~~~~~ 275 (861)
T d2bpta1 218 -----REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-----------------FMKPYMEQALYALTIATM 275 (861)
T ss_dssp -----SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-----------------GCHHHHHHTHHHHHHHHT
T ss_pred -----hhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHh
Confidence 0000011222233444556677777777666666543221 122344555555556666
Q ss_pred cCCChhHHHHHHHhccC-------------------CCCcchh-hccHhhHHHHHHHhC-------CCCHHHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYG-------------------NRGFDDF-LAQADCLSAIFAALN-------DEDFDVREYAISVA 623 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~-------------------~~~f~~~-L~~~~~l~~L~~~l~-------D~~~~VR~~a~~~l 623 (1874)
.+.++.+|..+++.+.. ...+.-. ..-.++++.++..+. |++..+|..+..++
T Consensus 276 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 355 (861)
T d2bpta1 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACL 355 (861)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 77777777765543310 0000000 001234555555553 23457899999999
Q ss_pred HhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 624 ~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
+.++...|..+.|.+.. .+.....+ .+++.|+.++..++.+++.+. ....+|++.+++.+++.+.+. ++
T Consensus 356 ~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~-----~~ 425 (861)
T d2bpta1 356 QLFAQNCGNHILEPVLE----FVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-----SL 425 (861)
T ss_dssp HHHHHHHGGGGHHHHHH----HHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-----CH
T ss_pred HHHHhhcchhhhhhhcc----hhhhhhhh-HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCc-----ch
Confidence 99999888777665544 33344445 678889999999999988764 567889999999999999875 78
Q ss_pred hHHHHHHHHHHHHHHhcccch--hhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc-cccc-cchHHHHHH
Q 000196 703 GIISGVLVTVGDLARVGGFGM--RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI-TPYN-EYPQLLGLL 778 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~--~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i-~p~~-~~p~ll~~L 778 (1874)
.|+..++.++|.++...+..+ ..++..+++.+...+.+ +..++..+..++..++....... .++. ..+.++..+
T Consensus 426 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 503 (861)
T d2bpta1 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc--ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHH
Confidence 999999999999998877644 45788888888887765 34567777778887777665432 2222 234566666
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHH
Q 000196 779 LKMLNG-ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTV 857 (1874)
Q Consensus 779 l~~l~~-~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 857 (1874)
+..... .....+|..++.+++.+....+...... .......
T Consensus 504 ~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~--------------------------------------~~~l~~~ 545 (861)
T d2bpta1 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAET--------------------------------------SASISTF 545 (861)
T ss_dssp HHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH--------------------------------------HHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHH--------------------------------------HHHHHHH
Confidence 665533 3356788888888776532111100000 0000011
Q ss_pred HHHHHHHHccCCC----------chhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCC-cchhHHHHHHHHHH
Q 000196 858 AINSLMRILRDPS----------LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD-DYLKDYITWKLGTL 926 (1874)
Q Consensus 858 vi~~Ll~iL~d~s----------~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~-~~~~~~~~~~l~~l 926 (1874)
+.+.|...+.... .......+..++..+++..+..+.||.+.+++.++..+...+ ..+++.++..++.+
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l 625 (861)
T d2bpta1 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH
Confidence 2222222221110 011233456667777788888889999999999999987765 35788999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000196 927 VSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1874)
Q Consensus 927 v~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~ 1006 (1874)
+..+++.+.||++.+++.+...+...+. .++ ..++.+++.++..++.++.||++.+++.+++.+++.+. +..
T Consensus 626 ~~~~~~~~~~~l~~i~p~l~~~l~~~~~-----~v~-~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~--~~~ 697 (861)
T d2bpta1 626 AASLGKGFEKYLETFSPYLLKALNQVDS-----PVS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA--RRE 697 (861)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHHCTTS-----HHH-HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC--CTT
T ss_pred HHHhhHHHHHHHHHHhhHHHHHhCCCCH-----HHH-HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCC--CHH
Confidence 9999999999999999999998876541 122 36788899999999999999999999999999976432 223
Q ss_pred hHHHHHHHHH----HHhcchhhhhhhhHHHHHHhhcCC---C-------cHHHHHHHHHHHHhhcccc-----cccchhH
Q 000196 1007 YVLDILHTLE----VFGGTLDEHMHLLLPALIRLFKVD---A-------PVDIRRAAIETLTRLIPRV-----QVTGHIS 1067 (1874)
Q Consensus 1007 ~~~~il~~l~----~~g~~~~~~~~~ilp~l~~~~~~~---~-------~~~vr~~ai~~l~~l~~~~-----~~~~~~~ 1067 (1874)
.+..++.++. .+|+.+.+|+..++|.+.+.+... . ..++|+.++.++..++... .+.||++
T Consensus 698 ~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~ 777 (861)
T d2bpta1 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3333444433 467888899999999888877532 1 2458999999988886542 3678999
Q ss_pred hHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhccc
Q 000196 1068 SLVHHLKLVLDGK----NDELRKDAVDALCCLAHALGED 1102 (1874)
Q Consensus 1068 ~ii~~l~~~l~~~----~~~l~~~al~~L~~l~~~~g~~ 1102 (1874)
.|++.+..++.+. +.+++..++.+++.++..+|..
T Consensus 778 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 816 (861)
T d2bpta1 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcch
Confidence 9998888777653 4678899999999999998853
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.8e-18 Score=232.57 Aligned_cols=788 Identities=14% Similarity=0.143 Sum_probs=464.1
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhccccCc-
Q 000196 26 LNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVALGE- 103 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~~~~~~- 103 (1874)
+.+++++.-|++.+.+++|+ ..+.++..++...|+..|.+. +.+ +.+.+.|..|...+...+......
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae-------~~L~~~~~~~~~~f~~~L~~i---~~~~~~~~~iR~~A~i~lKn~i~~~~~~~ 72 (876)
T d1qgra_ 3 LITILEKTVSPDRLELEAAQ-------KFLERAAVENLPTFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHHhCcCHHHHHHHH-------HHHHHHHhcChhHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHhhccccch
Confidence 45778888888656655432 244444444445555444432 222 234556766666665555321000
Q ss_pred -----------chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhhcCCCcchhH
Q 000196 104 -----------NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRR 170 (1874)
Q Consensus 104 -----------~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~r 170 (1874)
....-..+-+.+...+. + +..+++.++.+++.++.. +...|+++++.++..+.. .+.....|
T Consensus 73 ~~~~~~~~~~i~~~~k~~ik~~ll~~l~-~-~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~---~~~~~~~~ 147 (876)
T d1qgra_ 73 KAQYQQRWLAIDANARREVKNYVLHTLG-T-ETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN---PNSTEHMK 147 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTT-T-CCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC---TTCCHHHH
T ss_pred hhhhhcccccCCHHHHHHHHHHHHHHhc-C-CcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC---CCCcHHHH
Confidence 00111112234445553 2 335667789999999875 334688886665554421 34456789
Q ss_pred HHHHHHHHHHHhhc-CccchhchHHHHHHHHHhhc--CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 171 FAAVLILKEMAENA-STVFNVHVAEFVDAIWVALR--DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 171 ~aA~~~l~~la~~~-p~~~~~~l~~il~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.+|+.++..+++.. +..+.++++.+++.+...+. |++..+|.+|..++..+...+.... ........+++.+...
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~i~~~l~~~ 225 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHH
Confidence 99999999999875 46788999999999999996 4567899999999887765543211 1112223344444455
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHH-HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA-EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~-~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1874)
+.++ +++++..++.++..+.....+++.+++.+.+ ..+.....+.++.++..++..+..++...... ......
T Consensus 226 ~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 299 (876)
T d1qgra_ 226 TQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL-----AIEASE 299 (876)
T ss_dssp TTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH-----HHHhhH
Confidence 5555 4788899999999999988888888876543 34455566777888888887777665421111 111111
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC-------CchhHHHHHHHHHHhCCCchH
Q 000196 327 HILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP-------SLEALACVGNIARAMGPVMEP 399 (1874)
Q Consensus 327 ~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~-------~~~a~~~l~~l~~~~g~~~~p 399 (1874)
..... ........ . ....+++.+++.+.+.+....... +..+..|+..++...|..+
T Consensus 300 ~~~~~-~~~~~~~~----------~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-- 363 (876)
T d1qgra_ 300 AAEQG-RPPEHTSK----------F---YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-- 363 (876)
T ss_dssp HHHHS-SCCSSCCC----------C---HHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG--
T ss_pred HHHhh-hhHHHHHH----------H---HHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh--
Confidence 11111 01111000 0 012334445555555443221110 1123333333333332221
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000196 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1874)
Q Consensus 400 ~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1874)
T Consensus 364 -------------------------------------------------------------------------------- 363 (876)
T d1qgra_ 364 -------------------------------------------------------------------------------- 363 (876)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH
Q 000196 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1874)
Q Consensus 480 ~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1874)
.+.+.+.+...+.++++..|.++...++.+... + ....+.
T Consensus 364 --------------------~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~----~----------------~~~~~~ 403 (876)
T d1qgra_ 364 --------------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG----P----------------EPSQLK 403 (876)
T ss_dssp --------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS----S----------------CHHHHH
T ss_pred --------------------hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhh----h----------------hHHHHH
Confidence 122222233344556677777766555443311 0 001111
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc--hH
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL--PA 637 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~--p~ 637 (1874)
..+ +.+++.+...++|+++.||.+++.+++++++..|.... .+
T Consensus 404 ~~~-----------------------------------~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T d1qgra_ 404 PLV-----------------------------------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHH-----------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHH-----------------------------------HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence 111 13455666778899999999999999999988765432 23
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC--------------ccccccchHHHHHHHHHHhhccCCCCCChh
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--------------ERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--------------~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1874)
+...+..++..+ . .+++.+..+++.+..+.+.. ...+.+|++.++..++..+.+.. .....
T Consensus 449 ~~~~~~~l~~~l-~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~--~~~~~ 523 (876)
T d1qgra_ 449 LAPLLQCLIEGL-S--AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD--GHQNN 523 (876)
T ss_dssp HHHHHHHHHHHT-T--SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS--SCSTT
T ss_pred hhhHHHHHHHHh-c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc--cccHh
Confidence 444443344333 2 35778888999988887532 23467899999999999887642 13556
Q ss_pred HHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc
Q 000196 704 IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN 783 (1874)
Q Consensus 704 v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~ 783 (1874)
++..++.++..+....+....+++..+++.+...+... ....... ..... +.-..
T Consensus 524 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------l~~~~~~-~~~~~-~~~~~------- 578 (876)
T d1qgra_ 524 LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV----------------LQMESHI-QSTSD-RIQFN------- 578 (876)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH----------------HTTTTSC-CSTTH-HHHHH-------
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----------------HHHhhhh-cchhh-hHHHH-------
Confidence 77888888888888888888888888877777665321 0000000 00000 00000
Q ss_pred CCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHH
Q 000196 784 GELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLM 863 (1874)
Q Consensus 784 ~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll 863 (1874)
.++.....+++.+.. .. . ......+.+.++..++
T Consensus 579 -----~~~~~l~~~l~~~~~---~~---------------------~-----------------~~~~~~~~~~i~~~l~ 612 (876)
T d1qgra_ 579 -----DLQSLLCATLQNVLR---KV---------------------Q-----------------HQDALQISDVVMASLL 612 (876)
T ss_dssp -----HHHHHHHHHHHHHHT---TS---------------------C-----------------HHHHHTTHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH---Hc---------------------c-----------------hhhhhhhHHHHHHHHH
Confidence 001111111111100 00 0 0000113356677777
Q ss_pred HHccCC-CchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHHhHHHhHHHH
Q 000196 864 RILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVRQHIRKYLQEL 941 (1874)
Q Consensus 864 ~iL~d~-s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~~~i~~y~~~i 941 (1874)
+++... .....+..+..++..++...|..+.||++.++|.++..+++.. +.++..++..++.++...+.++.||++.+
T Consensus 613 ~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 692 (876)
T d1qgra_ 613 RMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEV 692 (876)
T ss_dssp HHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Confidence 877542 2234567888999999999999999999999999999998765 45888888999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc
Q 000196 942 FSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT 1021 (1874)
Q Consensus 942 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~ 1021 (1874)
++.+.+.|+...... . ....++.+++.++.++|++|.+|++.++|.+.+.++......+.. .. ..+.
T Consensus 693 ~~~l~~~l~~~~~~~---~-~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~-~~---~~~~----- 759 (876)
T d1qgra_ 693 MQLLLENLGNENVHR---S-VKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD-MV---DYLN----- 759 (876)
T ss_dssp HHHHHHHHTCTTSCG---G-GHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHH-HH---HHHH-----
T ss_pred HHHHHHHhCCccCCH---H-HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchh-HH---HHHH-----
Confidence 999999997654221 1 224789999999999999999999999999988876321111111 11 1111
Q ss_pred hhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc------------ccccchhHhHHHHHHHHhCC--CCHHHHHH
Q 000196 1022 LDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR------------VQVTGHISSLVHHLKLVLDG--KNDELRKD 1087 (1874)
Q Consensus 1022 ~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~------------~~~~~~~~~ii~~l~~~l~~--~~~~l~~~ 1087 (1874)
++|..++++++.+... ..+.+++..|+..+..+..+ .+.+++..
T Consensus 760 ----------------------~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 817 (876)
T d1qgra_ 760 ----------------------ELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVAC 817 (876)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 1112222222221110 12456666766655444443 35689999
Q ss_pred HHHHHHHHHHHhccccccch---hhHHHHHHhCC
Q 000196 1088 AVDALCCLAHALGEDFTIFI---PSIHKLLLKHR 1118 (1874)
Q Consensus 1088 al~~L~~l~~~~g~~f~~~i---p~i~~~l~~~~ 1118 (1874)
++.+|+.++..+|.+...++ |.|.+.+.+..
T Consensus 818 ~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~ 851 (876)
T d1qgra_ 818 AAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999998876555 77777666543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-19 Score=236.73 Aligned_cols=576 Identities=14% Similarity=0.067 Sum_probs=369.8
Q ss_pred CCCcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li 97 (1874)
+..+...+..+.++|++.+...| .|++.|..+.. .+.++.- .+++...+.+++...+ ..+.+.+-.+..++
T Consensus 5 ~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~----~lg~~~~---~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~ 76 (588)
T d1b3ua_ 5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVERT---RSELLPFLTDTIYDED-EVLLALAEQLGTFT 76 (588)
T ss_dssp TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHHHH---HHTHHHHHHHTCCCCH-HHHHHHHHHHTTCS
T ss_pred cCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HhCcHhh---HHHHHHHHHHHhcCcH-HHHHHHHHHHHHHH
Confidence 45556678889999999865555 48888776653 3344322 2456666777776544 34555556666665
Q ss_pred ccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 98 DVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
..-++ ...+..+.+.+..++. .+|..|+..|+++++.++... ..+.+...+...+..|.++.....|.+|+.++
T Consensus 77 ~~~~~--~~~~~~ll~~l~~l~~-~~~~~Vr~~a~~~l~~i~~~~---~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll 150 (588)
T d1b3ua_ 77 TLVGG--PEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLF 150 (588)
T ss_dssp GGGTS--GGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGH
T ss_pred HHcCC--hhHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 54322 2233445566666664 568899999999999998752 33334443334455554555667888888888
Q ss_pred HHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 178 ~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
..++...+.. ....+++.+...+.|+++.||.+|+.+++.+...+... .....+++.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~l~~d~-~~~vr 220 (588)
T d1b3ua_ 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD------NVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH------HHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHHhhHH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHhcCC-chhhH
Confidence 8887665543 34566777788889999999999999999887754421 11234555555555565 47889
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
.+++.+++.+....++. .+...+.+.+....++++..||..++.+++.++...+.+. ....+++.+...+.+..
T Consensus 221 ~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~ll~d~~~ 295 (588)
T d1b3ua_ 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhhccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhh---hhhhhhHHHHHHHhccch
Confidence 99999999888754321 2233455666666789999999999999999987544433 23567888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhh--hhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000196 337 -ERDSGFIALGEMAGALDGEL--FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1874)
Q Consensus 337 -~R~~a~~alg~la~~v~~~~--~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~l 413 (1874)
.|..|+.+++.++..++... .++++.+++.+...+.+....++..+..+++.++..+|.. .+.+.
T Consensus 296 ~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~---------- 363 (588)
T d1b3ua_ 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEH---------- 363 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh--HHHHH----------
Confidence 48899999999998887642 2456667777766665443222223333333333322210 01111
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000196 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1874)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1874)
T Consensus 364 -------------------------------------------------------------------------------- 363 (588)
T d1b3ua_ 364 -------------------------------------------------------------------------------- 363 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
+...+..++.+++++||..++.++..+..... .......+++.+.. ...|+
T Consensus 364 ---------l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~-------------------~~~~~~~ll~~l~~-~~~d~ 414 (588)
T d1b3ua_ 364 ---------LLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ---------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ---------HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-------------------hhhhhhHHHHHHHH-HHhcc
Confidence 11122233445566666665554444332110 11223444444443 35677
Q ss_pred ChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhC
Q 000196 574 DVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1874)
++.+|.++++.+.. ...+......+.+.+.++.++.|+...||.+|...++.++...+.. ...+.+.+.+..+..+
T Consensus 415 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~ 491 (588)
T d1b3ua_ 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTC
T ss_pred cHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcC
Confidence 88888877776631 0001111112346778888999999999999999999998765421 1233445555555555
Q ss_pred CCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHH
Q 000196 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1874)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp 732 (1874)
.+...|..++.+++.+++.++... +.+.+++.+++.+.|+ .++|+.+++.+++.+....+.. .+...+.|
T Consensus 492 -~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~-----v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~ 561 (588)
T d1b3ua_ 492 -PNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDNS--TLQSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCHH--HHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHcCcH--hHHHHHHH
Confidence 678889999999999988765422 3456788888888875 7899999999999987766542 24456677
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 733 ~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
.+...+.|. +.++|..|..+|..++
T Consensus 562 ~l~~L~~D~-d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 776666665 7899999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.6e-18 Score=224.55 Aligned_cols=521 Identities=17% Similarity=0.119 Sum_probs=344.1
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~ 201 (1874)
++|..+|..|++.++.++..-|.. .-.+.+++.+.+.+.+ .+ ..+.+++..|+.+...... ..++..+++.+..
T Consensus 21 ~~~~~~R~~a~~~l~~ia~~lg~~--~~~~~lip~l~~~~~~-~~-ev~~~~~~~l~~~~~~~~~--~~~~~~ll~~l~~ 94 (588)
T d1b3ua_ 21 NEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYD-ED-EVLLALAEQLGTFTTLVGG--PEYVHCLLPPLES 94 (588)
T ss_dssp CSCHHHHHHHHHTHHHHHHHSCHH--HHHHTHHHHHHHTCCC-CH-HHHHHHHHHHTTCSGGGTS--GGGGGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcH--hhHHHHHHHHHHHhcC-cH-HHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHH
Confidence 568999999999999998874421 1223345555555543 33 3444444433333221110 2366777888888
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 281 (1874)
.+.|+++.||++|.+++..+...+.. .-+...+..+...+.+++....|.+|+.+++.+....++.. ..+
T Consensus 95 l~~~~~~~Vr~~a~~~l~~i~~~~~~-------~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~~~ 164 (588)
T d1b3ua_ 95 LATVEETVVRDKAVESLRAISHEHSP-------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---KAE 164 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCH-------HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---HHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---HHH
Confidence 88999999999999999887654321 11222222233344444334567777777777765443322 334
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhh
Q 000196 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHY 359 (1874)
Q Consensus 282 i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~ 359 (1874)
+.+.+....++.++.||++++.+++.++...+.+.. .+.+++.+...++++. .|..|+.+++.++...+.. .+
T Consensus 165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~ 239 (588)
T d1b3ua_ 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DL 239 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHH---HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HH
Confidence 556666777899999999999999999987765433 2567777777776554 4789999999999887753 33
Q ss_pred hHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q 000196 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRL 439 (1874)
Q Consensus 360 l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~l 439 (1874)
...+++.+...+.+...+++..+..+++.++..+|++..+ ..++
T Consensus 240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~--~~l~---------------------------------- 283 (588)
T d1b3ua_ 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLV---------------------------------- 283 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH--HTHH----------------------------------
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh--hhhh----------------------------------
Confidence 4556677777776654444556667777666654432100 0011
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHH
Q 000196 440 LDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATR 519 (1874)
Q Consensus 440 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR 519 (1874)
..+..++.+.+++||
T Consensus 284 -----------------------------------------------------------------~~l~~ll~d~~~~vr 298 (588)
T d1b3ua_ 284 -----------------------------------------------------------------PAFQNLMKDCEAEVR 298 (588)
T ss_dssp -----------------------------------------------------------------HHHHHHHTCSSHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHhccchHHH
Confidence 111233455677888
Q ss_pred HHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc---
Q 000196 520 KDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA--- 596 (1874)
Q Consensus 520 ~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~--- 596 (1874)
..|+.+++.++....... .....+..+++.+.. ...|+++.||..+..++. .+.+.+.
T Consensus 299 ~~a~~~l~~~~~~l~~~~---------------~~~~~~~~i~~~l~~-~~~d~~~~vr~~~~~~l~---~~~~~~~~~~ 359 (588)
T d1b3ua_ 299 AAASHKVKEFCENLSADC---------------RENVIMSQILPCIKE-LVSDANQHVKSALASVIM---GLSPILGKDN 359 (588)
T ss_dssp HHHHHHHHHHHHTSCTTT---------------HHHHHHHTHHHHHHH-HHTCSCHHHHHHHHTTGG---GGHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhhhh---------------hhhhhHHHHHHHHHH-hhcCCChHHHHHHHHHHh---hhhhccchhH
Confidence 888888777664322100 012234555554444 478999999999988875 2222221
Q ss_pred -cHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc
Q 000196 597 -QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 597 -~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
...+++.+...++|++.+||..++..++.+....+ .+.+.+.++..+..+..+ .+++.|..++..++.++...+.
T Consensus 360 ~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~---~~~~~~~ll~~l~~~~~d-~~~~~r~~~~~~l~~l~~~~~~ 435 (588)
T d1b3ua_ 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG---IRQLSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC---HHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc---hhhhhhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHcCh
Confidence 23467788889999999999999999888776543 123344444555555455 6889999999999999987543
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH
Q 000196 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1874)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg 755 (1874)
.. +.+.+.+.+...+.|+ ...|+.+++.+++.++...|... ....++|.+...+.+. +...|.+++.+++
T Consensus 436 ~~--~~~~l~~~l~~~l~D~-----~~~VR~~A~~~L~~l~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~ 505 (588)
T d1b3ua_ 436 EF--FDEKLNSLCMAWLVDH-----VYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDP-NYLHRMTTLFCIN 505 (588)
T ss_dssp GG--CCHHHHHHHHHGGGCS-----SHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCS-CHHHHHHHHHHHH
T ss_pred Hh--HHHHHHHHHHhhccCC-----chhHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 22 2345556667777765 78899999999999998877542 3567888888888776 5789999999999
Q ss_pred HHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.+....+... ..+++++.+++.+++. .+.||..++++++.++
T Consensus 506 ~l~~~~~~~~----~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 506 VLSEVCGQDI----TTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHHHHHHH----HHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHG
T ss_pred HHHHHcChHH----HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 9988765421 1256888898888654 6899999999999886
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.5e-15 Score=208.11 Aligned_cols=623 Identities=13% Similarity=0.087 Sum_probs=398.8
Q ss_pred CcHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCC--ChhhhhhHHHHHhH
Q 000196 21 GSLDALNRILADLCTHGNP---KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESN--DAAENLGALRAIDE 95 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~---~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~--~~~~r~~~i~ai~~ 95 (1874)
.-|+++..+++.+.+++.. ++++...|..++ .++.++.+..+.+.+...+...+.++ +...|.+++.++..
T Consensus 125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~----~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~ 200 (876)
T d1qgra_ 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC----QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH----HHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHH
Confidence 3468899999999876532 223555555554 45677778788888888877777553 45678888888887
Q ss_pred hhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHH
Q 000196 96 LIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAA 173 (1874)
Q Consensus 96 li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA 173 (1874)
++...... ......-+.+.+...+. ..|.+++..+.+++..++.........++...+...+.....+..+..+..+
T Consensus 201 ~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 279 (876)
T d1qgra_ 201 SLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279 (876)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 76653211 11111223455555554 5688999999999999998743333333332222222211234445667777
Q ss_pred HHHHHHHHhhcC---------------------ccchhchHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHHHH
Q 000196 174 VLILKEMAENAS---------------------TVFNVHVAEFVDAIWVALR-------DPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 174 ~~~l~~la~~~p---------------------~~~~~~l~~il~~i~~~l~-------D~~~~VR~aA~~al~~~~~~i 225 (1874)
+.++..+++... ......++.+++.+...+. |....+|.+|..++..+....
T Consensus 280 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~ 359 (876)
T d1qgra_ 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Confidence 888877765211 1122455566666666553 233468999999998877654
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN-TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~-~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~ 304 (1874)
.+ ..+..+++.+...+.++ +|..+++++.+++.+... ..+.+.++..+++..++..+.+.++.||.+++.+
T Consensus 360 ~~-------~~~~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~ 431 (876)
T d1qgra_ 360 ED-------DIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431 (876)
T ss_dssp GG-------GGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hh-------hhhhhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 31 23556677777777776 599999999999998874 3466788889999999999999999999999999
Q ss_pred hHhHhhhChhhHH-HHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHHhhch--------------hhhhhhhHHHHHHHH
Q 000196 305 LPRIAHFLRDRFV-TNYLKICMNHILTVLRIPA-ERDSGFIALGEMAGALD--------------GELFHYLPTITSHLR 368 (1874)
Q Consensus 305 i~~la~~~~~~f~-~~yl~~~~~~Ll~~L~~~~-~R~~a~~alg~la~~v~--------------~~~~p~l~~i~~~l~ 368 (1874)
++.++.+.+..+. ..|++.+++.+...+.... .+..+..++..+..... ..+.+|++.++..+.
T Consensus 432 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~ 511 (876)
T d1qgra_ 432 VGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511 (876)
T ss_dssp HHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHH
T ss_pred HHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999987665432 2467888999888886532 35667777777665432 225678888888888
Q ss_pred HhhcCCCCCC---CchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 000196 369 EAIAPRRGKP---SLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISF 445 (1874)
Q Consensus 369 ~~L~~~~~~~---~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~ 445 (1874)
..+....... ...++.++..+.........|++..+++.++. .+..
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~l~~ 560 (876)
T d1qgra_ 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME-------------------------------RLQQ 560 (876)
T ss_dssp HHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHH-------------------------------HHHH
T ss_pred HHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-------------------------------HHHH
Confidence 8875433221 24567777777777777777777766554331 1110
Q ss_pred HhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHH-
Q 000196 446 VLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAAL- 524 (1874)
Q Consensus 446 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~- 524 (1874)
++...... ... +. ....+.....
T Consensus 561 ~l~~~~~~--------------------~~~-~~-----------------------------------~~~~~~~~~~l 584 (876)
T d1qgra_ 561 VLQMESHI--------------------QST-SD-----------------------------------RIQFNDLQSLL 584 (876)
T ss_dssp HHTTTTSC--------------------CST-TH-----------------------------------HHHHHHHHHHH
T ss_pred HHHHhhhh--------------------cch-hh-----------------------------------hHHHHHHHHHH
Confidence 11000000 000 00 0000000000
Q ss_pred --HhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHH
Q 000196 525 --CCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLS 602 (1874)
Q Consensus 525 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~ 602 (1874)
++..++.... .+...... +.++.
T Consensus 585 ~~~l~~~~~~~~--------------------~~~~~~~~-----------------------------------~~i~~ 609 (876)
T d1qgra_ 585 CATLQNVLRKVQ--------------------HQDALQIS-----------------------------------DVVMA 609 (876)
T ss_dssp HHHHHHHHTTSC--------------------HHHHHTTH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHcc--------------------hhhhhhhH-----------------------------------HHHHH
Confidence 0001110000 00000000 11222
Q ss_pred HHHHHhC--CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccc
Q 000196 603 AIFAALN--DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1874)
Q Consensus 603 ~L~~~l~--D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1874)
.+...+. +++..+++.++.+++.++...+..+.|++..++..++..+... .++..|..|+.+++.+++..+..+.||
T Consensus 610 ~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~ 688 (876)
T d1qgra_ 610 SLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNIIPF 688 (876)
T ss_dssp HHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 2333222 3456788889999999999888888899998888888888776 567789999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcch----------hhHHHH
Q 000196 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV----------TKREVA 750 (1874)
Q Consensus 681 ~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~----------~~r~~A 750 (1874)
.+.+++.++..+.++. .+..++..++.++|.++...|+.+.+|++.++|.+.+.++...+. ..|+.+
T Consensus 689 ~~~i~~~l~~~l~~~~---~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 765 (876)
T d1qgra_ 689 CDEVMQLLLENLGNEN---VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC 765 (876)
T ss_dssp HHHHHHHHHHHHTCTT---SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcc---CCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHH
Confidence 9999999999998752 356788999999999999999999999999999999988632111 246677
Q ss_pred HHHHHHHHhhcccc---ccc-c----ccchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc
Q 000196 751 VSTLGQVVQSTGYV---ITP-Y----NEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 751 ~~~Lg~l~~~~~~~---i~p-~----~~~p~ll~~Ll~~l~-~~~~~~vr~~al~~lg~lg 802 (1874)
+.+++.++...... ..+ . ..++.++..+..+.. ...+..+++.++.++|.+.
T Consensus 766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 826 (876)
T d1qgra_ 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 77777766543211 110 0 112344444333333 2347789999988888764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1e-09 Score=136.49 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=139.0
Q ss_pred HHHHHHhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCc-------
Q 000196 564 KLLIAAVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP------- 631 (1874)
Q Consensus 564 ~Ll~~~~~d~~~~vR~~~l~~l~~-----~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p------- 631 (1874)
..+.....++++++|..++++|.. ...|.+++. +.+...+....++++.+++..|+..+..+++..+
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~ 297 (458)
T d1ibrb_ 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 297 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445788999999998887742 112233432 1234455667788899999999999988764211
Q ss_pred ---------Ccc-----chHHHHHHHHHHHHH-hh-----CCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Q 000196 632 ---------AYV-----LPALRRHLIQLLTYL-EQ-----SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR 691 (1874)
Q Consensus 632 ---------~~v-----~p~l~~~l~~~l~~l-~~-----~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~ 691 (1874)
... ...+.. +...+... .+ ++.+...|..|..+++.++...++.+ ++.+++.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~l~~~i~~~ 373 (458)
T d1ibrb_ 298 EAAEQGRPPEHTSKFYAKGALQY-LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VPHVLPFIKEH 373 (458)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHH-HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---HHHHHHHHHHH
T ss_pred hHHHhhhHHHHHHHHHHHHHHHH-HhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---hhHHHHHHHHH
Confidence 111 112222 22222222 11 11233467788999999998887543 55666777777
Q ss_pred hhccCCCCCChhHHHHHHHHHHHHHHhc-ccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccccccccc
Q 000196 692 LLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNE 770 (1874)
Q Consensus 692 l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~ 770 (1874)
++++ ++.++.+++.++|.++... +..+.+|+++++|.++..++|+ +..+|.+|+++||++++..+....+...
T Consensus 374 l~s~-----~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~~~~~~~~~ 447 (458)
T d1ibrb_ 374 IKNP-----DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVY 447 (458)
T ss_dssp TTCS-----SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred hcCC-----CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccchhhH
Confidence 7764 7889999999999998754 4668999999999999999987 6789999999999999988765433344
Q ss_pred chHHHHHHH
Q 000196 771 YPQLLGLLL 779 (1874)
Q Consensus 771 ~p~ll~~Ll 779 (1874)
+|.+++.|+
T Consensus 448 l~~ll~~ll 456 (458)
T d1ibrb_ 448 LAPLLQCLI 456 (458)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 566666654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1.2e-07 Score=129.56 Aligned_cols=689 Identities=11% Similarity=0.113 Sum_probs=361.7
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhh-cCc-----cchh-chH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAEN-AST-----VFNV-HVA 193 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~~-~p~-----~~~~-~l~ 193 (1874)
+.+++.++.|-+-|..+-.. ++|...++. .+.++ .+...|.+|+..++..... ... .+.+ .-.
T Consensus 14 s~~~~~~k~Ae~~L~~~~~~-----p~f~~~L~~----i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~ 84 (959)
T d1wa5c_ 14 SVIASTAKTSERNLRQLETQ-----DGFGLTLLH----VIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (959)
T ss_dssp TTSGGGHHHHHHHHHHHHTS-----TTHHHHHHH----HHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcC-----CCHHHHHHH----HHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence 34677899999999887654 344444333 33333 3456788877788765543 322 1222 233
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch-
Q 000196 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG- 272 (1874)
Q Consensus 194 ~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~- 272 (1874)
.|-..++.+|.+++..||...+.+++.++.. +. -.+| +.+++.+.+.+.+++ ...+++++.++..+.+...
T Consensus 85 ~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~----d~--p~~W-p~ll~~l~~~l~s~~-~~~~~~~L~~l~~i~k~~~~ 156 (959)
T d1wa5c_ 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADS----DF--PDRW-PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRP 156 (959)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----HS--TTTC-TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH----hC--cccc-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHh
Confidence 3557788888889999999998888876542 11 1123 567888888887764 6789999999999986321
Q ss_pred ----h-----------hhHHHHHHHHHHHHHHhhcc--hhHHHH-------HHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000196 273 ----E-----------FMMSRYREVAEIVLRYLEHR--DRLVRL-------SITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1874)
Q Consensus 273 ----~-----------~~~~~~~~i~~~ll~~~~~~--~~~vr~-------~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1874)
+ .+.+.+.+++..+....... +...-. .++..+..+.......+....+...+..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (959)
T d1wa5c_ 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF 236 (959)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred hhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 1 11222222333322222211 111111 11222222222222334444566777777
Q ss_pred HHhhcCCC-----------------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--Cc---hhHHHH
Q 000196 329 LTVLRIPA-----------------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SL---EALACV 386 (1874)
Q Consensus 329 l~~L~~~~-----------------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~---~a~~~l 386 (1874)
...+.... .|...+..+..+....++.+.||++.+++.+.+.+....... .. .++.++
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l 316 (959)
T d1wa5c_ 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (959)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 77665421 122456666777777777788999998888777664322121 12 334444
Q ss_pred HHHHHHhC--CCc--hHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000196 387 GNIARAMG--PVM--EPHVRGLLDIMFSA--GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAAT 460 (1874)
Q Consensus 387 ~~l~~~~g--~~~--~p~l~~ll~~ll~~--~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~ 460 (1874)
..+++... ..+ .+++..++..++.. .++++-.+.+.+ -| ...+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~----dp--~~~~~~~---------------------- 368 (959)
T d1wa5c_ 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED----DP--IEYIRRD---------------------- 368 (959)
T ss_dssp HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT----CH--HHHHHHH----------------------
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhc----ch--HHHHHHH----------------------
Confidence 44333211 111 23444333322110 000000000000 00 0000000
Q ss_pred CCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC---CcchhhHHHHHhhhcc--CCChHHHHHHHHHhHHhhhcc
Q 000196 461 PIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG---HDLLEFARDSVVLYLD--DEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~---~~l~~~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
.++.+.......|...+..+ .+.+ ..+.+++...+..+.. +.++..|.+|...++.+....
T Consensus 369 ------------~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~ 436 (959)
T d1wa5c_ 369 ------------LEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436 (959)
T ss_dssp ------------HHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred ------------hhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhh
Confidence 00000011122233333322 1111 1123444444444433 345677777776666654321
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc---cHhhHHHHHHHhCC
Q 000196 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA---QADCLSAIFAALND 610 (1874)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~---~~~~l~~L~~~l~D 610 (1874)
... ....... .......+.+...+...+.. ..++.+.+|..++..++ .|...+. .+.+++.++.+++|
T Consensus 437 ~~~----~~~~~~~-~~~~~~~~~l~~~v~~~l~~-~~~~~~~lr~~~~~~i~---~~~~~~~~~~~~~~~~~l~~~L~~ 507 (959)
T d1wa5c_ 437 NIT----NAGVSST-NNLLNVVDFFTKEIAPDLTS-NNIPHIILRVDAIKYIY---TFRNQLTKAQLIELMPILATFLQT 507 (959)
T ss_dssp CCB----TTBCCCB-CTTCCHHHHHHHHTHHHHHC-SSCSCHHHHHHHHHHHH---HTGGGSCHHHHHHHHHHHHHHTTC
T ss_pred hhh----hhhhhcc-cchhhHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHH---HHHhhccHHHHHHHHHHHHHHhCC
Confidence 100 0000000 00001222232322222221 24456778888877764 2222221 14578888999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCc-----------CccchHHHHHHHHHHHHHhhCCCChH---hHHHHHHHHHHHHHhCccc
Q 000196 611 EDFDVREYAISVAGRLSEKNP-----------AYVLPALRRHLIQLLTYLEQSSADNK---CREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p-----------~~v~p~l~~~l~~~l~~l~~~~~~~~---~r~~a~~~L~~l~~~~~~~ 676 (1874)
++..||..|..++.++..... ..+.|++..++..++..+........ ..+....++..+++..++.
T Consensus 508 ~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~ 587 (959)
T d1wa5c_ 508 DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587 (959)
T ss_dssp SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT
T ss_pred CchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886432 34678888877777776654311111 1245778889999999999
Q ss_pred cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH
Q 000196 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg 755 (1874)
+.||.+.+++.+.+.+........++.....++.+++.+....| +.+..+...++|.+...++.. .......++..++
T Consensus 588 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~ 666 (959)
T d1wa5c_ 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIA 666 (959)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 99999999999988765432112356667778889999887665 456778889999999988754 3445667788888
Q ss_pred HHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCC
Q 000196 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1874)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1874)
.+....+.. .+ .+.++++.+++....... ..-..+..++......+|-.
T Consensus 667 ~~~~~~~~~-~~--~~~~l~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------------------------- 715 (959)
T d1wa5c_ 667 FVVEQSATI-PE--SIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKTDSSI--------------------------- 715 (959)
T ss_dssp HHHHHCSSC-CT--TTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHGGG---------------------------
T ss_pred HHHHhCCCc-cH--HHHHHHHHHhhHHHHHHh-hhHHHHHHHHHHHHHhCHHh---------------------------
Confidence 777776532 22 334566655543322211 12223333332211000000
Q ss_pred ccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHhcCC-c
Q 000196 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1874)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~l~~ilp~ll~~l~~~~-~ 913 (1874)
+ .+. ..++..+...+.++... ..++..+..++..++.. ..||++.++..++..+.+.+ +
T Consensus 716 ---~--------~~~-----~~~l~~~~~~l~~~~~~---~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~ 776 (959)
T d1wa5c_ 716 ---F--------PDL-----VPVLGIFQRLIASKAYE---VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (959)
T ss_dssp ---C--------SCS-----HHHHHHHHHHHTCTTTH---HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred ---h--------cch-----HHHHHHHHHHHCCCcch---HHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccH
Confidence 0 000 12334444455554332 24566777788877654 35788888888888887653 3
Q ss_pred chhHHHHHHHHHHH
Q 000196 914 YLKDYITWKLGTLV 927 (1874)
Q Consensus 914 ~~~~~~~~~l~~lv 927 (1874)
.....++..++.++
T Consensus 777 ~~~~~~~~~~~~~~ 790 (959)
T d1wa5c_ 777 RYVKKLTVFFGLIS 790 (959)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.7e-09 Score=130.27 Aligned_cols=425 Identities=13% Similarity=0.063 Sum_probs=241.0
Q ss_pred HHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc----------
Q 000196 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER---------- 675 (1874)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~---------- 675 (1874)
..+-+++.++|..|-+.|.++...+|..+ +..++..+.+...+...|..|+-.|...+....+
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~~~~~~-------~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~ 79 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVENLPTF-------LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 79 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCchHH-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhh
Confidence 34445666777777777776666553222 2222222222212345565565555554432211
Q ss_pred --ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC-cchhhHHHHHH
Q 000196 676 --LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVS 752 (1874)
Q Consensus 676 --~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~-~~~~~r~~A~~ 752 (1874)
.-......+...++..+.++. + ++..++.+++.++..... ....+++++.+++.+.+. .+...+..++.
T Consensus 80 ~~l~~~~~~~i~~~ll~~~~~~~-----~-~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~ 151 (458)
T d1ibrb_ 80 LAIDANARREVKNYVLQTLGTET-----Y-RPSSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLE 151 (458)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCC-----S-SSCSHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCc-----H-HHHHHHHHHHHHHHHhCC--cccCcchhHHHHHHHHhhcchHHHHHHHHH
Confidence 001122345555666665531 1 222334455555543221 123467788888888653 34456888999
Q ss_pred HHHHHHhhcccc-ccccccchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCC
Q 000196 753 TLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSG 830 (1874)
Q Consensus 753 ~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~l~~~-~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1874)
+++.++...+.. ..+ ..+.+++.+...+.++ .+..+|..++++++.+.-.-+..
T Consensus 152 ~l~~~~~~~~~~~~~~--~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~---------------------- 207 (458)
T d1ibrb_ 152 AIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN---------------------- 207 (458)
T ss_dssp HHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH----------------------
T ss_pred HHHHHHhhccchhhhh--hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh----------------------
Confidence 999998776543 222 2367889999888654 46889999999988764210000
Q ss_pred CCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHH-h
Q 000196 831 QHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV-R 909 (1874)
Q Consensus 831 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l-~ 909 (1874)
...+.+...+.+.+...+.+++. +.+..+++++..+++..+..+.||+..++..++... .
T Consensus 208 ------------------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 268 (458)
T d1ibrb_ 208 ------------------FDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 268 (458)
T ss_dssp ------------------HTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred ------------------hhhHHHHHHhHhhHHHHhcCCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 00111234556677777777653 566788999999999988888899888877766544 4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhH
Q 000196 910 TCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVIL 989 (1874)
Q Consensus 910 ~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~ll 989 (1874)
+.++.++..++..+..+..... .......+.......+. .. .......+++.++
T Consensus 269 ~~~~~~~~~a~~~l~~i~~~~~--------~~~~~~~~~~~~~~~~~-----~~-------------~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 269 SDIDEVALQGIEFWSNVCDEEM--------DLAIEASEAAEQGRPPE-----HT-------------SKFYAKGALQYLV 322 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH--------HHHHHHCCTTCSSSCSS-----CC-------------CCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH--------HHHHhhhhHHHhhhHHH-----HH-------------HHHHHHHHHHHHh
Confidence 4444555555444444332211 11000011111000000 00 0001123345556
Q ss_pred HHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccc
Q 000196 990 PCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQV 1062 (1874)
Q Consensus 990 p~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~---~~~ 1062 (1874)
|.+.+.+.+.+. ..+......+..++..+...+ ++.+..++|.+.+.+..+ .+.+|.+|+.+||.++.. ..+
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~ 401 (458)
T d1ibrb_ 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQL 401 (458)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHH
Confidence 666665542211 111122222333333333323 244566777777777643 688999999999999864 236
Q ss_pred cchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc--cccchhhHHHHHH
Q 000196 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED--FTIFIPSIHKLLL 1115 (1874)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~--f~~~ip~i~~~l~ 1115 (1874)
.+|++.+++.+...++++++.+|.+|+.+|+.++..++.. ...|+|.+.+.|.
T Consensus 402 ~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll 456 (458)
T d1ibrb_ 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 456 (458)
T ss_dssp CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence 7899999999999999999999999999999999887643 2355666666654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=4.2e-06 Score=113.98 Aligned_cols=394 Identities=11% Similarity=0.114 Sum_probs=233.1
Q ss_pred hHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc---------chhhcHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF---------GMRQYIS 728 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~---------~~~~~~~ 728 (1874)
.|..|..++..++...++.+.+.+.+.+..++...... .+.+...+.+++.++|.++..++. ...+..+
T Consensus 377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 454 (959)
T d1wa5c_ 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSD--PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (959)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccC--CccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHH
Confidence 46667778888888877655444444444333333322 123566677888888888754321 1122333
Q ss_pred hHHHHHHHHHhcC--cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 729 ELMPLIVEALLDG--AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 729 ~llp~l~~~l~d~--~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
-+.+.+...+... .....|..|++.+|+.+.... ...++++++.+++.|.++ +..+|..|..++..+-....
T Consensus 455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~-----~~~~~~~~~~l~~~L~~~-~~~V~~~a~~al~~~~~~~~ 528 (959)
T d1wa5c_ 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-----KAQLIELMPILATFLQTD-EYVVYTYAAITIEKILTIRE 528 (959)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-----HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHhhc
Confidence 3444444444432 234578888999998765432 124578999999999754 78899999998877632211
Q ss_pred cchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhh----HHHHHHHH
Q 000196 807 HAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASY----HQKVVGSL 882 (1874)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~----~~~v~~al 882 (1874)
... .. ... .. ......|+ ..++..|+..+.+...... ...+..++
T Consensus 529 ~~~-------------------~~----~~~-~~------~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l 577 (959)
T d1wa5c_ 529 SNT-------------------SP----AFI-FH------KEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (959)
T ss_dssp CSS-------------------SC----CBS-SC------GGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred ccc-------------------cc----hhh-cc------HHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 000 00 000 00 00112233 4556667777654432221 23488999
Q ss_pred HHHHHHhCCCCCCCccchhHHHHHHHhcC-----CcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCCc
Q 000196 883 MFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----DDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLPA 956 (1874)
Q Consensus 883 ~~i~~~~~~~~~~~l~~ilp~ll~~l~~~-----~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~~ 956 (1874)
..++...+..+.||.+.+++.+...+... ++.....++..++.++...++ ....+.+.+++.+...++....
T Consensus 578 ~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~-- 655 (959)
T d1wa5c_ 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ-- 655 (959)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccch--
Confidence 99999999999999999999998877532 123556677778888776543 4567888888888888875431
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHh
Q 000196 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRL 1036 (1874)
Q Consensus 957 ~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~ 1036 (1874)
.....++.++..+....+ ...+-+..+++.++..... +..........+++.+...++..-.....++..+..+
T Consensus 656 ----~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 729 (959)
T d1wa5c_ 656 ----EFIPYVFQIIAFVVEQSA-TIPESIKPLAQPLLAPNVW-ELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRL 729 (959)
T ss_dssp ----TTHHHHHHHHHHHHHHCS-SCCTTTGGGHHHHTSGGGG-CCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHhhHHHH-HHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHH
Confidence 112246666666655443 2334444555655543322 1122234455677777666655444445556666666
Q ss_pred hcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhcc
Q 000196 1037 FKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHALGE 1101 (1874)
Q Consensus 1037 ~~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~~g~ 1101 (1874)
+... ..+..++..++.++... .+.++++.++..++..+.... +......+-.++.++...+.
T Consensus 730 l~~~---~~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (959)
T d1wa5c_ 730 IASK---AYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGS 795 (959)
T ss_dssp HTCT---TTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HCCC---cchHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCH
Confidence 5432 22356777777776543 256789999998888887543 45666666677777655443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=1e-06 Score=108.01 Aligned_cols=192 Identities=9% Similarity=0.098 Sum_probs=122.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
.++.++..+.+++.+++..++.+++.++..++......+..-..+.+..+..+ .+...++.++++|+.++.........
T Consensus 231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 309 (434)
T d1q1sc_ 231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQ 309 (434)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHH
Confidence 35566667777888889899999988887664322111111112223334444 57788999999999998765543332
Q ss_pred chH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
... .+++.++..+.+. ++.++..++.+++.++.........++- .+++.+++.+... +.+.+..++.+|..
T Consensus 310 i~~~~~i~~li~~l~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ 383 (434)
T d1q1sc_ 310 VVNHGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISN 383 (434)
T ss_dssp HHHTTCHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHhcc-----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 222 3567777777764 7889999999999998876544333332 3588888888754 67788899999998
Q ss_pred HHhhccccc--ccccc---chHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 757 VVQSTGYVI--TPYNE---YPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 757 l~~~~~~~i--~p~~~---~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
++......- .++.. -...++.+ ..|.+.++++++..|.+.+-
T Consensus 384 ll~~~~~~~~~~~~~~~~~~~~~~~~i-~~L~~~~n~~i~~~a~~il~ 430 (434)
T d1q1sc_ 384 IFQAAEKLGETEKLSIMIEECGGLDKI-EALQRHENESVYKASLNLIE 430 (434)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTSHHHH-HHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHcCCHHHH-HHHHcCCCHHHHHHHHHHHH
Confidence 886543210 11111 01223333 33556668899998887764
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.2e-06 Score=110.41 Aligned_cols=266 Identities=15% Similarity=0.075 Sum_probs=166.9
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+...+.+++..+|..|+..++.+...... .... -.++++.|+.......+.+++..+..+
T Consensus 22 L~~lL~~~~~~v~~~A~~~l~~l~~~~~~------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~ 83 (529)
T d1jdha_ 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccHH------------------HHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34667788899999999999988642210 0011 134556666554556678888877777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 585 l~~-~~~--f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
|.. +.. ....+.....++.|...+++++.+++..|+.+|+.++..++..-.-....-.++.|..+..+ ++...+..
T Consensus 84 L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~ 162 (529)
T d1jdha_ 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHHHH
Confidence 641 111 00111223458889999999999999999999999998776431111111122333344445 57888999
Q ss_pred HHHHHHHHHHhCccccccc-hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHh
Q 000196 662 SAKLLGCLIRNCERLIRPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~ 739 (1874)
++.++..++......-... -...++.++..++.. ....+...+..++..++.. .+.-...+ ...++.+...+.
T Consensus 163 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~----~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T d1jdha_ 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh----hhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhc
Confidence 9999999986543221111 112355666666553 2456777777777766542 11111122 245777887777
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+. +...+..|+.++..+....... ......++.|+++++++ +..++..++.+++.+.
T Consensus 238 ~~-~~~~~~~a~~~l~~ls~~~~~~----~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 238 DP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLT 294 (529)
T ss_dssp SS-CHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred cc-chhhhhhhhhHHHhccccccch----hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhc
Confidence 65 5677888999998876544332 22357889999998765 6789999998888775
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=5.8e-07 Score=110.15 Aligned_cols=363 Identities=14% Similarity=0.091 Sum_probs=212.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhH
Q 000196 18 AGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDE 95 (1874)
Q Consensus 18 ~~~~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~ 95 (1874)
.++.+.-.+..+++.|+|.+.+.+ .|+.+|++++... .+-..+.+.+ ..+.+.+.+++++ ++...|..++.++..
T Consensus 7 ~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~-~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~ 83 (434)
T d1q1sc_ 7 NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE-KQPPIDNIIR--AGLIPKFVSFLGKTDCSPIQFESAWALTN 83 (434)
T ss_dssp TTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSS-SCCCHHHHHH--TTCHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-CCchHHHHHH--CCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 345555568889999999975544 4888888775211 1111122211 1245566677754 456667778888888
Q ss_pred hhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcch----
Q 000196 96 LIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEY---- 168 (1874)
Q Consensus 96 li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~---- 168 (1874)
+..... +....+ ....+.+..++. .++.++++.|+++|+.++.........+.+ ..++.++..+.......
T Consensus 84 la~~~~-~~~~~i~~~~~i~~l~~~L~-~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~ 161 (434)
T d1q1sc_ 84 IASGTS-EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 161 (434)
T ss_dssp HHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HhcCCh-hhhhHhhhccchhhhhhccc-cCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH
Confidence 864431 111111 123455666665 568999999999999998753211111111 23444555554322211
Q ss_pred hHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHh
Q 000196 169 RRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQD 246 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~ 246 (1874)
....+...+..++.+.+. ........+++.++..+.++++.+|..|+.+++.+... ........ ...+++.+..
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~Lv~ 237 (434)
T d1q1sc_ 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----PNERIEMVVKKGVVPQLVK 237 (434)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS----CHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh----hhhhHHHHhhcccchhccc
Confidence 112334455666665443 33456778899999999999999999999988876421 11111111 1235555666
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHH
Q 000196 247 GLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KIC 324 (1874)
Q Consensus 247 ~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~ 324 (1874)
.+..+ +.+.+..++.+++.+.....+....-+ ..+++.+...+++.++.||..++.++..++....+. ..... ..+
T Consensus 238 ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~ 315 (434)
T d1q1sc_ 238 LLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ-IQQVVNHGL 315 (434)
T ss_dssp HHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTC
T ss_pred ccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchh-HHHHhhhhh
Confidence 56555 467888888898887754433222211 124456677788999999999999999998765532 22222 346
Q ss_pred HHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHH
Q 000196 325 MNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIAR 391 (1874)
Q Consensus 325 ~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~ 391 (1874)
++.+...+..+. .|..|..+++.++.....+...++ ..+++.+.+.+...+.+....++.++..|..
T Consensus 316 i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~ 386 (434)
T d1q1sc_ 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 386 (434)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 777777776554 477899999998866544322222 2345556666643332222345555555443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.6e-06 Score=104.98 Aligned_cols=431 Identities=14% Similarity=0.073 Sum_probs=244.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
.++.|...++|++..+|..|..+++.++...+.. .... ...+..++..+..+ ++.+.++.|+.+|..++.... ..
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~-~~~~~~~~~v~~l~~~L~~~-~~~~~~~~a~~~L~~l~~~~~-~~ 94 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHRE-GL 94 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHH-HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHH-HHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCch-hH
Confidence 4788888999999999999999999998765321 0101 12233344445555 677889999999988864321 11
Q ss_pred ccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhh-cHHhHHHHHHHHHhcCcchhhHHHHHHHHH
Q 000196 678 RPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1874)
Q Consensus 678 ~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg 755 (1874)
...++ ..++.++..++++ ++.++..++.+|+.++......-.. .-...+|.++..|.+. +.+.+..|..+|+
T Consensus 95 ~~i~~~g~i~~Li~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 168 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCC-----CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHH
Confidence 11111 3567788888764 7889999999999988754432111 1345688899988765 5788999999999
Q ss_pred HHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCC
Q 000196 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1874)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1874)
.++......-... .....++.+..+++......++..+..+++.+.. ++...+.
T Consensus 169 ~l~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~------------------------ 222 (529)
T d1jdha_ 169 ILAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPA------------------------ 222 (529)
T ss_dssp HHHTTCHHHHHHH-HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHH------------------------
T ss_pred HHhhhhhHHHHHH-HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccch------------------------
Confidence 9875532210000 0123566777777666677888888888877642 2211000
Q ss_pred ccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcch
Q 000196 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYL 915 (1874)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~ 915 (1874)
....-.++.|.+.+.+++.. ....++.++..+.... ........+++.++..++..++.+
T Consensus 223 -----------------~~~~g~~~~L~~ll~~~~~~-~~~~a~~~l~~ls~~~--~~~~~~~~~i~~Lv~ll~~~~~~~ 282 (529)
T d1jdha_ 223 -----------------IVEAGGMQALGLHLTDPSQR-LVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINV 282 (529)
T ss_dssp -----------------HHHTTHHHHHHTTTTSSCHH-HHHHHHHHHHHHHTTC--TTCSCCHHHHHHHHHHTTCSCHHH
T ss_pred -----------------hhhhhhhhhHHHHhcccchh-hhhhhhhHHHhccccc--cchhhhhhcchhhhhhcccccHHH
Confidence 00112456677777766542 2234444554443221 112345678999999998888888
Q ss_pred hHHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhh--hhhc--cch
Q 000196 916 KDYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND--EFRT--HLP 986 (1874)
Q Consensus 916 ~~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~--~f~~--yl~ 986 (1874)
++.+...|+.+...- +..+. ..++.++..+... ... +..+..++.++..++..... .... -..
T Consensus 283 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~---~~~-----~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~ 354 (529)
T d1jdha_ 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDR-----EDITEPAICALRHLTSRHQEAEMAQNAVRLH 354 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH---TTC-----HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhh---hcc-----hhHHHHHHHHhhcccchhhcchhhhhhHHhc
Confidence 888877777765321 11121 1233333333211 110 00111233333333211110 0111 123
Q ss_pred hhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh--hh--hhhHHHHHHhhcCC---------------------C
Q 000196 987 VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE--HM--HLLLPALIRLFKVD---------------------A 1041 (1874)
Q Consensus 987 ~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~--~~--~~ilp~l~~~~~~~---------------------~ 1041 (1874)
..++.+++.+..++ +......++.++..++.+-.. .+ .-.+|.+++++... .
T Consensus 355 ~~l~~L~~ll~~~~---~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (529)
T d1jdha_ 355 YGLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp TCHHHHHHTTSTTC---CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred ccchhHHHHHhccc---hHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccc
Confidence 34677777886432 222333344445444322111 11 12466666655311 2
Q ss_pred cHHHHHHHHHHHHhhcccccccch--hHhHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000196 1042 PVDIRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1874)
Q Consensus 1042 ~~~vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1874)
..+++..+..+++.++....-... -...+++|+..|.+++++++..+..+|+.|+
T Consensus 432 ~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 488 (529)
T d1jdha_ 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 346677777777777654211111 1235678889999888999999999998875
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=4.1e-07 Score=114.13 Aligned_cols=347 Identities=12% Similarity=0.096 Sum_probs=217.3
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1874)
..+.+++...+..|...+++++..... .....++ ..+++.|+.....+.++.++..++.+|..
T Consensus 83 ~~~~s~~~~~~~~a~~~~r~~ls~~~~----------------~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~n 146 (503)
T d1wa5b_ 83 QQLNSDDMQEQLSATVKFRQILSREHR----------------PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 146 (503)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHTCCSSS----------------CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCC----------------chHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 446777888888888888888743211 0011222 34567777765567788899887777641
Q ss_pred CCCcch----hhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH-----HHHHHHHhhCCCChHh
Q 000196 588 NRGFDD----FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL-----IQLLTYLEQSSADNKC 658 (1874)
Q Consensus 588 ~~~f~~----~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l-----~~~l~~l~~~~~~~~~ 658 (1874)
-...++ .+.....++.+...+++++.+++..|+.+|+.++..++. .+..+ ...+..+..+ .+...
T Consensus 147 i~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~-----~r~~l~~~~~~~~L~~ll~~-~~~~~ 220 (503)
T d1wa5b_ 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-----YRDYVLQCNAMEPILGLFNS-NKPSL 220 (503)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTCHHHHHHGGGS-CCHHH
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHH-----HHHHHHhhcccccchhhccc-CCHHH
Confidence 011111 122234678888889899999999999999999987753 23222 2223333344 46677
Q ss_pred HHHHHHHHHHHHHhCcccc-ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHH
Q 000196 659 REESAKLLGCLIRNCERLI-RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVE 736 (1874)
Q Consensus 659 r~~a~~~L~~l~~~~~~~~-~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~ 736 (1874)
+..++++|..++....... ...+..+++.++..+... ++.+...++.+++.++....+.....+ ..++|.++.
T Consensus 221 ~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-----d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 295 (503)
T d1wa5b_ 221 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 295 (503)
T ss_dssp HHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhh
Confidence 8889999999986543221 123445677777777654 678888889999988865444333333 256788888
Q ss_pred HHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccC
Q 000196 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 737 ~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~ 816 (1874)
.+... +...+..|+.+++.++...+.... ......+++.+..++++. ++.+|.+++.+++.+.+-+|......
T Consensus 296 ll~~~-~~~v~~~al~~l~nl~~~~~~~~~-~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i---- 368 (503)
T d1wa5b_ 296 LLSHE-STLVQTPALRAVGNIVTGNDLQTQ-VVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV---- 368 (503)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH----
T ss_pred cccCC-chhhhhhHHHHHHHHHHHHHHHHH-hhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHH----
Confidence 87755 577899999999999876544321 111235788888888755 78999999999998865443321100
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC--CC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG--CV 894 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~--~~ 894 (1874)
....+++.++..|..++. .....++.++.++....... ..
T Consensus 369 -------------------------------------~~~~~l~~li~~l~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~ 410 (503)
T d1wa5b_ 369 -------------------------------------IDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDII 410 (503)
T ss_dssp -------------------------------------HHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHH
T ss_pred -------------------------------------HHccccchhHHhcccCCh-hHHHHHHHHHHHHHhcccccHHHH
Confidence 001133456666665554 34557778888877654322 12
Q ss_pred CCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHH
Q 000196 895 PYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLV 927 (1874)
Q Consensus 895 ~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv 927 (1874)
.++ ..+++.++..+...++.....++..+..+.
T Consensus 411 ~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll 445 (503)
T d1wa5b_ 411 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 445 (503)
T ss_dssp HHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 232 346777888887666555555555444443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=7.7e-06 Score=102.11 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=203.0
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~ 148 (1874)
.+.+.+.+++++...+..|+.++..++.......-..+.+ ..+.|..++....+.++...|+++|+.|+.........
T Consensus 78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~ 157 (503)
T d1wa5b_ 78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 157 (503)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445556788999999999999998876532211112221 24566666654456789999999999998642111222
Q ss_pred HHHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 149 EVEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 149 ~v~~-~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~-~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
+++. .++.++..|.+ .+...+..|+.+|+.|+...+..-.. .-..+++.++..+.++++.++..+..++..+...
T Consensus 158 ~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~-- 234 (503)
T d1wa5b_ 158 VVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-- 234 (503)
T ss_dssp HHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC--
T ss_pred HHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC--
Confidence 2222 34555555654 34467888999999998765542111 1124567778888999999999999988877542
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
............+++.+...+... +.+.+..++.++..+.....+.....+. .+++.++..+.+.+..++..++.++
T Consensus 235 -~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l 312 (503)
T d1wa5b_ 235 -KKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 312 (503)
T ss_dssp -SSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHH
Confidence 111112223455677777777665 4688888888998888755544333332 3667788888999999999999999
Q ss_pred HhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-HHHHHHHHHhhcCCCCCCCch
Q 000196 306 PRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLE 381 (1874)
Q Consensus 306 ~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~L~~~~~~~~~~ 381 (1874)
+.++...... ....+ ..+++.+...+..++ .|..++.++++++..-.......+ ..+++.+.+.+.....+....
T Consensus 313 ~nl~~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~ 391 (503)
T d1wa5b_ 313 GNIVTGNDLQ-TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 391 (503)
T ss_dssp HHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHH-HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHH
Confidence 9998755432 22122 357788888887655 367899999998754433222222 234555555554443334457
Q ss_pred hHHHHHHHHHHh
Q 000196 382 ALACVGNIARAM 393 (1874)
Q Consensus 382 a~~~l~~l~~~~ 393 (1874)
+..+++.++...
T Consensus 392 a~~~l~nl~~~~ 403 (503)
T d1wa5b_ 392 ACWAISNASSGG 403 (503)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 788888887653
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=1.5e-05 Score=90.12 Aligned_cols=241 Identities=14% Similarity=0.080 Sum_probs=152.9
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH
Q 000196 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1874)
+......|+..|+.+. . +-.-..+..++.++++.||..|+.+++.+..... .
T Consensus 32 ~~~vR~~A~~~L~~~~---~---~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~----------------------~ 83 (276)
T d1oyza_ 32 NSLKRISSARVLQLRG---G---QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK----------------------C 83 (276)
T ss_dssp SHHHHHHHHHHHHHHC---C---HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT----------------------T
T ss_pred CHHHHHHHHHHHHhhC---C---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc----------------------c
Confidence 3446678888888773 1 2233455677888999999999988877632110 0
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL 635 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1874)
-..++..++.....|+++.||..++.+|+. +... ...+..++.+...++|+++.||..++..++.+... ...
T Consensus 84 ~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~---~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~---~~~ 157 (276)
T d1oyza_ 84 EDNVFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---ATI 157 (276)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCH
T ss_pred ccchHHHHHHHHhcCCChhHHHHHHHHHHH---HccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH---HHH
Confidence 223344455566789999999999998852 1111 11235677888889999999999999988865432 223
Q ss_pred hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
+.+.. +... .+...+..+...++.+.... ......++..+.+. +..++..+..+++.+
T Consensus 158 ~~l~~--------l~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~al~~~ 215 (276)
T d1oyza_ 158 PLLIN--------LLKD-PNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-----NEEVRIEAIIGLSYR 215 (276)
T ss_dssp HHHHH--------HHTC-SSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-----CHHHHHHHHHHHHHT
T ss_pred HHHHH--------hccc-ccchhhhhHHHHHHhhhccc--------cccchhhhhhhhhh-----hhhhhhhhccccchh
Confidence 32222 2223 34555555555544432222 23344455555543 677777777666543
Q ss_pred HHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 716 a~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
. . ...+|.+++.+.|+ .+|..|+.+||.+. . +..++.|...+.++.+..+|..|+
T Consensus 216 ~----~------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig----~--------~~~~~~L~~~l~~~~d~~vr~~A~ 270 (276)
T d1oyza_ 216 K----D------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAI 270 (276)
T ss_dssp T----C------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred h----h------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC----C--------HHHHHHHHHHHccCCCHHHHHHHH
Confidence 2 1 34577888888754 48999999999862 1 356788888887776789999998
Q ss_pred HHHH
Q 000196 796 KVLG 799 (1874)
Q Consensus 796 ~~lg 799 (1874)
..|.
T Consensus 271 ~~L~ 274 (276)
T d1oyza_ 271 DKLK 274 (276)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=7.2e-05 Score=84.36 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=128.0
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.|+++.||..++..|.. + ..++.++.+..+++|+++.||..|+.+|+.+....+. .+.. +..++..
T Consensus 27 ~L~d~~~~vR~~A~~~L~~---~----~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~--~~~~---~~~l~~~ 94 (276)
T d1oyza_ 27 LLDDHNSLKRISSARVLQL---R----GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC--EDNV---FNILNNM 94 (276)
T ss_dssp HTTCSSHHHHHHHHHHHHH---H----CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--HHHH---HHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHh---h----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--ccch---HHHHHHH
Confidence 5789999999999999852 1 2356789999999999999999999999998754432 1222 2222333
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1874)
+..+ .++..|..++..|+.+....+ .+.+.+++.+...+.+. ++.++..++.+++.... +
T Consensus 95 ~l~d-~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~-----~~~vr~~a~~~l~~~~~----------~ 154 (276)
T d1oyza_ 95 ALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND----------K 154 (276)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC-------------
T ss_pred HhcC-CChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCc-----chHHHHHHHHHHhhcch----------H
Confidence 3445 678899999999999886543 23345666677767664 67787777666654321 2
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 729 ~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..++.+...+.+. +..+|..+..+++.+... .+...+.+...+.. .+..+|..++..+|.+|
T Consensus 155 ~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 155 ATIPLLINLLKDP-NGDVRNWAAFAININKYD----------NSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRK 216 (276)
T ss_dssp CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccc-cchhhhhHHHHHHhhhcc----------ccccchhhhhhhhh-hhhhhhhhhccccchhh
Confidence 3345666666655 566777777777654322 23455666666654 47889999888887765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.0053 Score=71.63 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=94.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++......
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----------FPDAYCNLANALKEKGS---VAEAEDCYNTALRLC 301 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS----------CHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHhhhccC
Confidence 44778888899999999999999999888877653 35677778888888885 678888887765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. .+.++..+|.-.... ...++.++.|++|++.+|+...+|+.+|....+
T Consensus 302 ~~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 351 (388)
T d1w3ba_ 302 PT----------------------HADSLNNLANIKREQ------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-- 351 (388)
T ss_dssp TT----------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT--
T ss_pred Cc----------------------cchhhhHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 11 122233333332222 346788899999999999999999888876543
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.+ + ...|++.|-++|.+.
T Consensus 352 -----~g------~-~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 352 -----QG------K-LQEALMHYKEAIRIS 369 (388)
T ss_dssp -----TT------C-CHHHHHHHHHHHTTC
T ss_pred -----cC------C-HHHHHHHHHHHHHhC
Confidence 11 1 136888888888874
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.1e-05 Score=85.94 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=123.8
Q ss_pred HHHHH-HHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 601 LSAIF-AALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 601 l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
++.++ .++++++.+||..|+.+|+.++.++|..-..... ..+..++..+..+ .++..+..++.+|+.++...+....
T Consensus 60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~v~~~a~~aL~~l~~~~~~~~~ 138 (264)
T d1xqra1 60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLL 138 (264)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcC-CCHHHHHHHHHHHHHHhccchhhHH
Confidence 44444 5788899999999999999999998753222222 2233344444455 6778899999999999987765433
Q ss_pred cc-hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 679 PY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 679 py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
.+ -...++.+++.+.+. +..+...++.+++.++...++....+.. ..+|.++..+.+. +.+.|+.|+.+|+.
T Consensus 139 ~~~~~~gi~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~~aL~~ 212 (264)
T d1xqra1 139 QFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCS 212 (264)
T ss_dssp HHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHhcC-----chHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 32 224677888888764 7788888899999988766655544444 3789999999876 57899999999999
Q ss_pred HHhhccccc----cccccchHHHHHHHHHhcCC
Q 000196 757 VVQSTGYVI----TPYNEYPQLLGLLLKMLNGE 785 (1874)
Q Consensus 757 l~~~~~~~i----~p~~~~p~ll~~Ll~~l~~~ 785 (1874)
++...+..+ .+-...+.++..+.+.+...
T Consensus 213 L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~ 245 (264)
T d1xqra1 213 LVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245 (264)
T ss_dssp HHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHhhhhHHHHHHHHHHhccch
Confidence 987654332 11122345666666666544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.013 Score=68.16 Aligned_cols=166 Identities=11% Similarity=0.117 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+....|+++.|...+.+....++. .+......+...+..|+ ..+|+..+++.+....
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p 268 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN----------HAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP 268 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh----------HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCC
Confidence 3566666666666667776666666665544321 23444455555666663 4566666665443100
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+ .......++.++...|+ .++.+..|+.+....|.....|..+|....+
T Consensus 269 ---~------------~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 317 (388)
T d1w3ba_ 269 ---H------------FPDAYCNLANALKEKGS-------------VAEAEDCYNTALRLCPTHADSLNNLANIKRE--- 317 (388)
T ss_dssp ---S------------CHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---
T ss_pred ---C------------CHHHHHHHHHHHHHcCC-------------HHHHHHHHHhhhccCCccchhhhHHHHHHHH---
Confidence 0 00001112333333322 3455666666666666666666666554321
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
. .-...|++.|-+++... + ........+=.+++..|..++-...+++.+.
T Consensus 318 ----~-------~~~~~A~~~~~~al~~~-----p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 318 ----Q-------GNIEEAVRLYRKALEVF-----P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp ----T-------TCHHHHHHHHHHHTTSC-----T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ----C-------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 11235667777766653 1 2233444555566666666665555555543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0005 Score=76.67 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=123.6
Q ss_pred cchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHH
Q 000196 166 VEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEA 243 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~ 243 (1874)
++..|.+|+..|..+++.... .-.-.+..+.+.+...+.++++.||..|+.+++.+...- +..+.... ...++.
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~----~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV----AAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCchHH
Confidence 356788999999999976332 111234444444556788999999999999999876421 11222221 245566
Q ss_pred HHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH-HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH
Q 000196 244 TQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS-RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK 322 (1874)
Q Consensus 244 ~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~-~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~ 322 (1874)
+..-+.+..+.+++..++.++..+.......... .-...+..++..+.+.++.++..++.+|..++...++....-.-.
T Consensus 106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (264)
T d1xqra1 106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185 (264)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 6665543334678899999999998754322111 122346677788889999999999999999988766543221113
Q ss_pred HHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000196 323 ICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 323 ~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~ 354 (1874)
..++.|...|+.+. .|..|+.+|+.++...+.
T Consensus 186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~ 219 (264)
T d1xqra1 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 219 (264)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence 56888888887654 478999999999866544
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0032 Score=75.43 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHH--HHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR--HLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~--~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
+|.|+..|++++++||..|..+|+.++..++.. ...+.+ .+..++. +..+ ++++.|+.|+.+|+.++...++.-.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~-~~~i~~~g~i~~Lv~-lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-KQQVYQLGGICKLVD-LLRS-PNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-HHHHHHTTHHHHHHH-HTTS-SCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCcHHHHHH-HHCC-CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 677888889999999999999999999877642 111111 1222333 3344 5788999999999999854432211
Q ss_pred cchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHH---------------hcCc
Q 000196 679 PYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL---------------LDGA 742 (1874)
Q Consensus 679 py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l---------------~d~~ 742 (1874)
...+ ..++.++..+... .++.++..++.++..++...... ......-++.++..+ .+..
T Consensus 81 ~i~~~g~v~~li~~l~~~----~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHCCChHHHHHHHhcc----CcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence 1111 2355666666543 36778888888998888754332 222223333333322 1223
Q ss_pred chhhHHHHHHHHHHHHhhc
Q 000196 743 AVTKREVAVSTLGQVVQST 761 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~ 761 (1874)
+...+..|..++..++...
T Consensus 156 ~~~v~~~a~~~l~~~~~~~ 174 (457)
T d1xm9a1 156 DPEVFFNATGCLRNLSSAD 174 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHHHHhcCc
Confidence 4556777888887766543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0069 Score=72.38 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=99.9
Q ss_pred hccHhhHHHHHHHh-CCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH-----HHHHHHHhhCCCChHhHHHHHHHHHH
Q 000196 595 LAQADCLSAIFAAL-NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL-----IQLLTYLEQSSADNKCREESAKLLGC 668 (1874)
Q Consensus 595 L~~~~~l~~L~~~l-~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l-----~~~l~~l~~~~~~~~~r~~a~~~L~~ 668 (1874)
+.....++.+...+ ...+.+++..+...+..++...........+..+ ++.+..+..+ ++.+.+..++.+++.
T Consensus 279 ~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~l~~ 357 (457)
T d1xm9a1 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSN 357 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcC-ccHHHHHHHHHHHHH
Confidence 33445566555444 3456788888999999888766433222222221 2233334345 678889999999999
Q ss_pred HHHhCccccccchHHHHHHHHHHhhccCC-CCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHhcCcchhh
Q 000196 669 LIRNCERLIRPYIAPIHKALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTK 746 (1874)
Q Consensus 669 l~~~~~~~~~py~~~il~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~d~~~~~~ 746 (1874)
++.... .........++.++..+..... ...+..++..++.++..++...++.-...+. ..++.+++.+.+.++..+
T Consensus 358 La~~~~-~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~ 436 (457)
T d1xm9a1 358 MSRHPL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp HHTSGG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHH
T ss_pred HhhChh-HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHH
Confidence 986432 1112223445666666654321 1124567778888888887544332222222 468888988887666778
Q ss_pred HHHHHHHHHHHHhh
Q 000196 747 REVAVSTLGQVVQS 760 (1874)
Q Consensus 747 r~~A~~~Lg~l~~~ 760 (1874)
+++|..+|+.++.+
T Consensus 437 ~~aA~~~L~~L~~~ 450 (457)
T d1xm9a1 437 AEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999987643
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.92 E-value=0.00027 Score=66.94 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=58.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
++.|+++.||..++.+|+. + ..+..++.|..+++|+++.||..|+..||++.. +... +.+..
T Consensus 30 ~l~d~~~~vR~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~-------~~~~----~~L~~ 91 (111)
T d1te4a_ 30 SLSNEDWRIRGAAAWIIGN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVR----AAMEK 91 (111)
T ss_dssp GGGCSCHHHHHHHHHHHGG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHH----HHHHH
T ss_pred HHcCCCHHHHHHHHHHHHh---c----chhhhHHHHHhhhccchhHHHHHHHHHHHHhCc-------cchH----HHHHH
Confidence 5789999999999999962 1 124568888999999999999999999998753 1122 22333
Q ss_pred HhhCCCChHhHHHHHHHH
Q 000196 649 LEQSSADNKCREESAKLL 666 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1874)
+..+ +++..|..|+..|
T Consensus 92 ll~d-~~~~vr~~A~~aL 108 (111)
T d1te4a_ 92 LAET-GTGFARKVAVNYL 108 (111)
T ss_dssp HTTS-CCTHHHHHHHHHG
T ss_pred HHcC-CCHHHHHHHHHHH
Confidence 3345 6788888888765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.041 Score=62.27 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=78.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|++.++..+..
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~- 235 (323)
T d1fcha_ 170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALEL- 235 (323)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred cccccchhhHHHHHHHHHHhhhhcccccccccccc----------cccchhhhhhccccccc---chhHHHHHHHHHHH-
Confidence 35678888999999999999999999998877653 36677788888889995 68999999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1874)
.+ ..++++..+|.....+ ...++.+..|++|++++|+...+++.
T Consensus 236 ~p---------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 236 QP---------------------GYIRSRYNLGISCINL------GAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHTC------
T ss_pred hh---------------------ccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 11 0133455555555443 23578899999999999987765553
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.67 E-value=0.0015 Score=61.49 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=76.7
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHh
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~ 650 (1874)
+|+++.||..++.+|+. +.+ +.++.|..+++|+++.||..|+.+||.+... ...|. | +..+.
T Consensus 2 ~D~~~~VR~~A~~aL~~---~~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~---~~~~~----L---~~~l~ 63 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSR---MGD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE---RAVEP----L---IKLLE 63 (111)
T ss_dssp CSSCCCSSSSCCSSTTS---CSS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH---HHHHH----H---HHHHH
T ss_pred CCcCHHHHHHHHHHHHH---hCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh---hhHHH----H---Hhhhc
Confidence 68899999999999962 222 3567788899999999999999999875431 12222 2 22233
Q ss_pred hCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHH
Q 000196 651 QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1874)
Q Consensus 651 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1874)
+ .++..|..|+++|+.+.. +...+.+...+.++ ++.|+..++.+|.
T Consensus 64 d--~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~-----~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 64 D--DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-----TGFARKVAVNYLE 109 (111)
T ss_dssp H--CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-----CTHHHHHHHHHGG
T ss_pred c--chhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCC-----CHHHHHHHHHHHH
Confidence 3 578999999999988721 34566666777764 7788888777653
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.88 E-value=0.0077 Score=64.10 Aligned_cols=18 Identities=33% Similarity=0.191 Sum_probs=12.4
Q ss_pred HhhhccCCChHHHHHHHH
Q 000196 507 VVLYLDDEDKATRKDAAL 524 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~ 524 (1874)
...|++|++.+||..|+.
T Consensus 47 ~~~~l~~p~~e~Ra~Aa~ 64 (233)
T d1lrva_ 47 AVQYLADPFWERRAIAVR 64 (233)
T ss_dssp GGGGTTCSSHHHHHHHHT
T ss_pred HHHHhcCCcHHHHHHHHh
Confidence 346788888888866553
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.28 E-value=0.014 Score=62.02 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.1
Q ss_pred HhhhccCCChHHHHHHHHH
Q 000196 507 VVLYLDDEDKATRKDAALC 525 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~ 525 (1874)
+.++++|+++.||.+|+..
T Consensus 71 L~~Ll~D~d~~VR~~AA~~ 89 (233)
T d1lrva_ 71 LTPLIRDSDEVVRRAVAYR 89 (233)
T ss_dssp GGGGTTCSSHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 4577889999999988754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.71 Score=51.32 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=110.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|..++.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|++.++..+....
T Consensus 52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 118 (323)
T d1fcha_ 52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYTP 118 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc----------ccccccccccccccccc---ccccccchhhHHHhcc
Confidence 3566777777777777777777777776665542 24555666666666664 4567776666543211
Q ss_pred CCCccccc-----ccccccccc------------------------CcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000196 1648 SCPVIQSA-----ASTSLTTAT------------------------STNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1874)
Q Consensus 1648 ~~~~~~~~-----~~~~~~~~~------------------------~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~ 1698 (1874)
........ ......... .......+.++..+|...... ...++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~------~~~~~A~ 192 (323)
T d1fcha_ 119 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS------GEYDKAV 192 (323)
T ss_dssp TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred chHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH------HHHhhhh
Confidence 10000000 000000000 000001123344444444332 3578889
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000196 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1874)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1874)
..|+++++.+|++..+|...|....+. .-...|++.|-+++.+. .........+=.+++.
T Consensus 193 ~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 193 DCFTAALSVRPNDYLLWNKLGATLANG--------------NQSEEAVAAYRRALELQ------PGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhhccccc--------------ccchhHHHHHHHHHHHh------hccHHHHHHHHHHHHH
Confidence 999999999999999999998775431 12357899999999874 2334556677778888
Q ss_pred cCCcHHHHHHHHhccc
Q 000196 1779 HGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1779 ~g~~~~v~~~~~~~~~ 1794 (1874)
.|..++..+.+++.+.
T Consensus 253 ~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 253 LGAHREAVEHFLEALN 268 (323)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8988777766666553
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.74 E-value=1.9 Score=47.87 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=88.0
Q ss_pred CChHHHHHHHHHHHHHhhh----CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000196 123 RDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~ 198 (1874)
+++.+...+.-++|.|+.. ...-..++++.....+.+... .+++..+..++.+|+-+. .|. +++.
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLGN~g--~p~--------~i~~ 207 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAG--QPN--------SIKK 207 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT--CGG--------GHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhccC--CHh--------HHHH
Confidence 4677888888899999874 122334455554444444333 234445566666666543 232 2333
Q ss_pred HHHhhc-------CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000196 199 IWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1874)
Q Consensus 199 i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1874)
+...+. +....||.+|..||+.+.. .++. .....+++...+ ...+.++|-+|..++ .++.
T Consensus 208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~----~~p~---~v~~~l~~i~~n---~~e~~EvRiaA~~~l---m~t~ 274 (336)
T d1lsha1 208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESK 274 (336)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTC
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhhh----cCcH---HHHHHHHHHHcC---CCCChHHHHHHHHHH---HhcC
Confidence 333332 3457899999999985422 2221 111222222222 222468888876665 3432
Q ss_pred hhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChh
Q 000196 272 GEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 272 ~~~~~~~~~~i~~~ll~~-~~~~~~~vr~~~~~~i~~la~~~~~ 314 (1874)
+. . .++..+... ..+++..|+..+...|-.++.....
T Consensus 275 P~-----~-~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P 312 (336)
T d1lsha1 275 PS-----V-ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 312 (336)
T ss_dssp CC-----H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CC-----H-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence 21 0 122223332 2568888999888888888875443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.56 Score=43.35 Aligned_cols=110 Identities=10% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
....-++.+-+.|+++.|.....++...+|. .+.+....+..+...|+ ..+|+..++..+.-....
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~- 70 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKPDW- 70 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------chhhhhccccccccccc---ccccchhhhhHHHhccch-
Confidence 3456688899999999999999999888763 46778888899999995 688999998877431100
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
...--.++.++..+|+ .++.+..|++|++++|+...+|..++..
T Consensus 71 --------------~~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 71 --------------GKGYSRKAAALEFLNR-------------FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp --------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred --------------hhHHHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0011224455544444 4788999999999999999999888765
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.39 E-value=0.78 Score=51.25 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=88.0
Q ss_pred HHHHHHhhhcC----CChhhhhhHHHHHhHhhccccC----cchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000196 70 LYDRISGLLES----NDAAENLGALRAIDELIDVALG----ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1874)
Q Consensus 70 l~~~i~~l~~s----~~~~~r~~~i~ai~~li~~~~~----~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~ 141 (1874)
+.+.+.+++++ .++.-+..++++++.|+..... .....+..+.+++..... ..|.+-+-.+-++||.+-..
T Consensus 124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 202 (336)
T d1lsha1 124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 202 (336)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhccCCH
Confidence 34556667665 4667788899999999765211 124456677788887775 45777778889999987432
Q ss_pred CCCcchHHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHH
Q 000196 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAV 215 (1874)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~ 215 (1874)
.. ++.+..++.+ +.....|.+|+.+++.++...|....+.+-+|+- + .+.+++||-+|.
T Consensus 203 ---~~-------i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i~~---n--~~e~~EvRiaA~ 267 (336)
T d1lsha1 203 ---NS-------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFL---N--VAIKSELRIRSC 267 (336)
T ss_dssp ---GG-------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHH---C--TTSCHHHHHHHH
T ss_pred ---hH-------HHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHc---C--CCCChHHHHHHH
Confidence 11 4555555543 2244689999999998888776544433333222 1 344688999999
Q ss_pred HHHHH
Q 000196 216 EALRA 220 (1874)
Q Consensus 216 ~al~~ 220 (1874)
.++=.
T Consensus 268 ~~lm~ 272 (336)
T d1lsha1 268 IVFFE 272 (336)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=1.3 Score=48.97 Aligned_cols=139 Identities=8% Similarity=0.047 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1569 VETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
...|...+.+..+.|+ ++.|...+.++...+|. .+.+..-.+.++-..|+ ..+|+..+++.+..-.
T Consensus 77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~----------~~~a~~~~~~~~~~l~~---~~eAl~~~~kal~~dp 143 (315)
T d2h6fa1 77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQDA 143 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh----------hhhHHHHHhHHHHhhcc---HHHHHHHHhhhhhhhh
Confidence 4455555555556554 78888888888877663 24555555556656675 4679998888765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
.. ..--..++.++..+|+| ++.++.|.+|++++|+...+|+..|....+.-.
T Consensus 144 ~n---------------~~a~~~~~~~~~~~~~~-------------~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 144 KN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cc---------------hHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence 00 00011245555555554 457789999999999999999988865443211
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.........|++.|.++|.+.
T Consensus 196 --------~~~~~~~~~ai~~~~~al~~~ 216 (315)
T d2h6fa1 196 --------YNDRAVLEREVQYTLEMIKLV 216 (315)
T ss_dssp --------SCSHHHHHHHHHHHHHHHHHS
T ss_pred --------cchhhhhHHhHHHHHHHHHhC
Confidence 112345678999999999985
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.97 E-value=4.1 Score=44.53 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHHhcCC--------------hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHH
Q 000196 1568 DVETWLKFASLCRKSGR--------------ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRK 1633 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~--------------~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~ 1633 (1874)
..+.|+++++...++|+ .+.|...+.++....+. ..+.+-+.++.+.-.+|+ ..
T Consensus 49 ~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p---------~~~~l~~~ya~~~~~~~~---~~ 116 (308)
T d2onda1 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---------KNMLLYFAYADYEESRMK---YE 116 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---------TCHHHHHHHHHHHHHTTC---HH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHhccc---HH
Confidence 46789999987765443 35555666665542111 235677888888888885 56
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000196 1634 EAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1874)
Q Consensus 1634 ~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1874)
+|...++..+.... .....++..+++..... ...+.....|..|++..|....
T Consensus 117 ~a~~i~~~~l~~~~---------------------~~~~~~w~~~~~~~~~~------~~~~~ar~i~~~al~~~~~~~~ 169 (308)
T d2onda1 117 KVHSIYNRLLAIED---------------------IDPTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHHHHHHHHHTSSS---------------------SCTHHHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHHHHHHHHHhc---------------------CChHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCcHH
Confidence 77777776553110 01123355556555443 3467888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1714 AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1714 ~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.|..+|..-.... .....|..-|-+++... ..+..-..+.+.+....|+...+...+++++
T Consensus 170 ~~~~~a~~e~~~~-------------~~~~~a~~i~e~~l~~~------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 170 VYVTAALMEYYCS-------------KDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTS-------------CCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-------------cCHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9988886532210 12234556666666553 2235556777777788898888888888888
Q ss_pred cCCChh------hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchh
Q 000196 1794 AHVNIN------TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQA 1837 (1874)
Q Consensus 1794 ~~ip~~------~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa 1837 (1874)
...|.. .|..++- .=.+.+.. ..+.++..|..+.+|..
T Consensus 231 ~~~~~~~~~~~~iw~~~~~-fE~~~G~~-----~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLA-FESNIGDL-----ASILKVEKRRFTAFREE 274 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHH-HHHHHSCH-----HHHHHHHHHHHHHTTTT
T ss_pred HhCCCChHHHHHHHHHHHH-HHHHcCCH-----HHHHHHHHHHHHHCccc
Confidence 765522 3544433 22222322 23455667777777755
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=1.9 Score=46.16 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=123.3
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH------HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL------RRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l------~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
.+.+..|...+..-+++.|..+..++..+....+..=.|.. .+++..++...+ +++..-.+..+|-+.++
T Consensus 68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye----~~eiAl~~G~mLREcik 143 (330)
T d1upka_ 68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 143 (330)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC----CcchhhhhhHHHHHHHh
Confidence 35678888888888899999999999999888766544422 123333333322 33333344445555443
Q ss_pred hCc--ccc--ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----ccchhhcHHhHHHHHHHHHhcCcc
Q 000196 672 NCE--RLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 672 ~~~--~~~--~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~llp~l~~~l~d~~~ 743 (1874)
+-. ..+ .+. +..+...+.. ++-++.+.++.++.++.... .+.+..+++.++..+...|+.. +
T Consensus 144 ~e~lak~iL~s~~----f~~fF~yv~~-----~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-N 213 (330)
T d1upka_ 144 HEPLAKIILWSEQ----FYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-N 213 (330)
T ss_dssp SHHHHHHHHHSGG----GGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-S
T ss_pred hHHHHHHHHccHH----HHHHHHHHcC-----CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-c
Confidence 310 000 011 1122222332 36778888888888877543 3456667788888887666544 5
Q ss_pred hhhHHHHHHHHHHHHhhcc--ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 744 VTKREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
--.|..+++-||.+...-. .++.-|..-|+-|..++++|++. +..++.+|++++-...|
T Consensus 214 YVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 214 YVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence 6678889999999884432 33556766789999999999854 89999999998876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.84 Score=44.72 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~----~~~~~~~~~ 1364 (1874)
.-|....+.+.|.+|+.+++..+.. +++.......|..+|.++|+.+.|.-.++.+-. +. .....+..|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 3466778889999999888776653 244566777888888888888888777765422 11 112233447
Q ss_pred HHhcCHHHHHHHHHHHHhccCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASN 1386 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~ 1386 (1874)
..+|+|++|+.+|++.+.-.++
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 7888888888888887765443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.89 E-value=5.1 Score=43.64 Aligned_cols=118 Identities=12% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1564 PPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1564 ~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
.|.+....|++++++.++.|.++.|...+.++....|. .+.+.+..+...|.... ....|...++..+
T Consensus 129 ~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~----------~~~~~~~~a~~e~~~~~--~~~~a~~i~e~~l 196 (308)
T d2onda1 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----------RHHVYVTAALMEYYCSK--DKSVAFKIFELGL 196 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----------CTHHHHHHHHHHHHTSC--CHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 45555678999999999999999999999998876553 35677788888887543 2577888888877
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc----cchHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT----KWGKAWHSWA 1719 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~----~~~k~w~~wA 1719 (1874)
..... ....+..++++.... ...+.+...|++|++.++ +....|..|+
T Consensus 197 ~~~p~----------------------~~~~w~~y~~~~~~~------g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~ 248 (308)
T d2onda1 197 KKYGD----------------------IPEYVLAYIDYLSHL------NEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHTT----------------------CHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred Hhhhh----------------------hHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 64321 123456667776543 457889999999998765 3456899998
Q ss_pred HH
Q 000196 1720 LF 1721 (1874)
Q Consensus 1720 ~~ 1721 (1874)
.|
T Consensus 249 ~f 250 (308)
T d2onda1 249 AF 250 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.96 Score=42.04 Aligned_cols=112 Identities=8% Similarity=-0.046 Sum_probs=76.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000196 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1874)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~ 1654 (1874)
.++..-..+.+..|...-.+++..+|. .+.+.+-++..+-..++.....+|+..+++.+..
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~----------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--------- 65 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--------- 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---------
Confidence 445556677888898888888877663 4788888888886655433456799999886531
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
......+.++..+|.-..++ ...++.+++|+++++++|++.++..--+...
T Consensus 66 -----------~~~~~~~~~~~~Lg~~y~~~------g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 66 -----------GSKEEQRDYVFYLAVGNYRL------KEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----------cCCchHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 01122344455555444443 2457889999999999999998887655443
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=14 Score=39.87 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 000196 171 FAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQD 246 (1874)
Q Consensus 171 ~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~ 246 (1874)
..-+.++......+++ .....++.+++.++.--+...|..|++. ...+..+...+.+.-....+..+..+++.+..
T Consensus 47 keiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~ 126 (321)
T d1w9ca_ 47 RETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLN 126 (321)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445555555666654 2334677888888777777777777653 33333333333322233456677888888877
Q ss_pred hccCC--CChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh---C---hh
Q 000196 247 GLGRN--APVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF---L---RD 314 (1874)
Q Consensus 247 ~l~~~--~~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~---~---~~ 314 (1874)
-+.++ +-++.|..-...|..+...+-+.+ .+.+..+++.+.-..+|.++.|....+.++-.+... . ..
T Consensus 127 MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~ 206 (321)
T d1w9ca_ 127 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQ 206 (321)
T ss_dssp HHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 66553 237888888889999988665432 357788899999999999999999988877665531 1 13
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCC
Q 000196 315 RFVTNYLKICMNHILTVLRIPAE 337 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1874)
.|.+.|+-.++..+...+.+...
T Consensus 207 ~F~~~y~~~il~~if~vltD~~H 229 (321)
T d1w9ca_ 207 SFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHChhH
Confidence 47677777788888887765543
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=10 Score=40.29 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=110.2
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcc--hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---c
Q 000196 113 NYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---T 186 (1874)
Q Consensus 113 ~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~--~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p---~ 186 (1874)
..|...+| .-|.+.++-++.++..+.+. .|+.. .+|+...-+-....+++..+..--..+=.+|++.+.+-+ -
T Consensus 72 ~~Li~~L~-~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~ 150 (330)
T d1upka_ 72 STLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKI 150 (330)
T ss_dssp HHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHhCC-CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHH
Confidence 34445554 34788999999999888775 23322 345444322222222322221222223345566554421 1
Q ss_pred cch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000196 187 VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1874)
Q Consensus 187 ~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~ 265 (1874)
.++ +++-.++ .-+.-|+-.|-..|...++.++.--..-...+-...|..++.....-+.++ ...++.-|+..||
T Consensus 151 iL~s~~f~~fF----~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLg 225 (330)
T d1upka_ 151 ILWSEQFYDFF----RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLG 225 (330)
T ss_dssp HHHSGGGGHHH----HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred HHccHHHHHHH----HHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 121 3344444 344668888855555555554431110011122334556666655445554 4889999999999
Q ss_pred HHHH--cchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 266 ELLR--NTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 266 ~ll~--~~~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
+++. .....|..|.. +-+..++..+++++..||-.+.+++....+.
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN 275 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 275 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence 9986 44466776664 4456778888999999999999999876653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=89.84 E-value=0.78 Score=41.89 Aligned_cols=79 Identities=15% Similarity=-0.039 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000196 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1874)
Q Consensus 1616 ~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~ 1695 (1874)
.+..+..+..+|+ ..+|+..+++.+..-. ..+.++..+|.+..+. ...+
T Consensus 19 ~~~~g~~~~~~g~---~~~A~~~~~~al~~~p----------------------~~~~a~~~lg~~~~~~------~~~~ 67 (112)
T d1hxia_ 19 PMEEGLSMLKLAN---LAEAALAFEAVCQKEP----------------------EREEAWRSLGLTQAEN------EKDG 67 (112)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHST----------------------TCHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHHHHHhh---hHHHHHHHhhhccccc----------------------ccchhhhhhhhhhhhh------hhHH
Confidence 4678888899995 6899999998875311 1256788888887765 3578
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1696 EIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
+.+..|++|++++|+...+|+.+|..+...
T Consensus 68 ~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 68 LAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhhcccccccccccccccchHHHHHHHHHC
Confidence 999999999999999999999999887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.20 E-value=8.3 Score=41.38 Aligned_cols=163 Identities=7% Similarity=-0.067 Sum_probs=88.3
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----------hhhh
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----------DVQL 1359 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----------~~~~ 1359 (1874)
.|..=..++.|.+|+-+.+....-............+...+..+|.++|+++.+....+.+-... ....
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34455566777787777665543111000000112456677889999999998876665332110 0111
Q ss_pred cHHHHHH-hcCHHHHHHHHHHHHhc---cCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHH---HhHH
Q 000196 1360 KESWYEK-LQRWDDALKAYTNKASQ---ASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAAR---LEMA 1430 (1874)
Q Consensus 1360 ~~~~~E~-lg~W~~Al~~y~~~~~~---~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~---~~~~ 1430 (1874)
.+..|+. +|+|++|++.|++.+.. ..++.........+..++..+|+|+.-....+..- ....+..+ ....
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 2223544 79999999999987642 12222223345667888999999987666554311 01111111 1111
Q ss_pred HHHHHHHHHcCChhhHHHHHhhc
Q 000196 1431 PMAANAAWNMGEWDQMAEYVSRL 1453 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1874)
...+.+.-..|+++.........
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 22233445677888877766654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=89.14 E-value=1.8 Score=45.88 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=73.0
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHH
Q 000196 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTG 1748 (1874)
Q Consensus 1669 ~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~ 1748 (1874)
...|++++.+|.-.... ...++.+..|++|++++|++..+|+.+|..+.+. .-...|++.
T Consensus 34 ~~~a~~~~~~G~~y~~~------g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~--------------g~~~~A~~~ 93 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSL------GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA--------------GNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH--------------HHHHHhhhh
Confidence 44677788777766554 3578899999999999999999999999875541 123368888
Q ss_pred HHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1749 YFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1749 f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
|-+++.+.+ ........+-.+++..|...+..+.+++.+..-|
T Consensus 94 ~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 94 FDSVLELDP------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136 (259)
T ss_dssp HHHHHHHCT------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHh------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence 888888752 2233455666677777877766666666654444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.99 Score=41.51 Aligned_cols=88 Identities=14% Similarity=0.027 Sum_probs=46.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.-|..+.+-|.|..|+-+.+..+.. ++........+..+|..+|+.+.+...+..+... . ..-..+..+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc------CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence 3466677778888888777665542 2333455555555665555555555554432210 0 011122235
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
..+|+|++|+.+|++.+..
T Consensus 82 ~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=1.4 Score=43.07 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~Rl 1772 (1874)
..++.+..|++|++++|++..+|+.+|..+... .-...|+..|-++|.+. ....+...++
T Consensus 25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~kal~~~------p~~~~a~~~~ 84 (159)
T d1a17a_ 25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--------------ECYGYALGDATRAIELD------KKYIKGYYRR 84 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred CHHHHHHHhhhccccchhhhhhhhhhHHHHHhc--------------cccchHHHHHHHHHHHc------ccchHHHHHH
Confidence 457889999999999999999999999876652 13347999999999985 3456778889
Q ss_pred HHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1773 LTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
-.+++..|+..+....+++.+..-|
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999888877777765433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=87.55 E-value=4 Score=42.85 Aligned_cols=114 Identities=13% Similarity=-0.032 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+....|...+.+-++.|+++.|.....+++.++|+ .+.+.+..+...-..|+ ..+|+..+++.+..-
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 101 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 101 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------CHHHHhhhchHHHHHHH---HHHhhhhhhHHHHHH
Confidence 34677888888889999999999999888887663 36666777777777784 678988888876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
... ..--..++.+|..+|+ .++.++.|+++++.+|+....+...+..
T Consensus 102 p~~---------------~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 102 PTY---------------NYAHLNRGIALYYGGR-------------DKLAQDDLLAFYQDDPNDPFRSLWLYLA 148 (259)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhh---------------hhhHHHHHHHHHHHhh-------------HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 100 0001123444444444 4567788888998888776655544433
|
| >d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: BC3264-like domain: Hypothetical protein EF3068 species: Enterococcus faecalis [TaxId: 1351]
Probab=87.15 E-value=4.4 Score=41.46 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000196 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1874)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1874)
++.++....++.+.... +++...+.+|.+++.-..|..|+..+....... . ....+++...++..+.=+
T Consensus 32 ~r~laK~~~k~~~~~~~----~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-~------~~~l~~~~~~~~~~~~Wd 100 (213)
T d2b6ca1 32 RQALSKQLLKESHTWPK----EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-S------LEEVVAFKAYVPQKAWWD 100 (213)
T ss_dssp HHHHTHHHHHHHTTSCH----HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-C------HHHHHHGGGGTTTTCSHH
T ss_pred HHHHHHHHHHhcCCCCH----HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-C------HHHHHHHHHHHccCccHH
Confidence 44444444444443322 233444557788877777887777766665432 1 123456666666554557
Q ss_pred HHHHHHHHHH-HHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcC
Q 000196 127 ILVLASKVLG-HLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD 205 (1874)
Q Consensus 127 v~~~aa~~lg-~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D 205 (1874)
+.+..+..++ .+... ..+ ..+.+.+|..++.-|.+|.|.+..+.. .-......++..+-..+.|
T Consensus 101 ~vD~~~~~i~~~~~~~----~~~----~~~~l~~w~~s~~~w~rR~aiv~~l~~-------~~~~~~~~~~~~~~~~~~d 165 (213)
T d2b6ca1 101 SVDAWRKFFGSWVALH----LTE----LPTIFALFYGAENFWNRRVALNLQLML-------KEKTNQDLLKKAIIYDRTT 165 (213)
T ss_dssp HHHHHHHHHHHHHHHS----GGG----HHHHHHHHTTCSSHHHHHHHHHTTTTC-------GGGCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHh----hhh----HHHHHHHHHhCCCHHHHHHHHHHHHHH-------HHcccHHHHHHHHHHhCCC
Confidence 7776666554 44443 111 235567899888889888775544322 2223556677777788899
Q ss_pred CchhHHHHHHHHHHHHH
Q 000196 206 PTLAVRERAVEALRACL 222 (1874)
Q Consensus 206 ~~~~VR~aA~~al~~~~ 222 (1874)
++.-||.|-..+|+.+.
T Consensus 166 ~e~~i~kAigW~Lre~~ 182 (213)
T d2b6ca1 166 EEFFIQKAIGWSLRQYS 182 (213)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.85 E-value=1.1 Score=43.08 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=57.0
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 000196 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGY 1749 (1874)
Q Consensus 1670 l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f 1749 (1874)
.++.+++.+++|..... .....++.+..|++|++++|++..+|+.+|..+.++-+.. ++.....++...|++.|
T Consensus 36 ~~g~~l~~~~~~~~~~e---~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~---~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 36 RWGGVLLELSQFHSISD---AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT---PDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhH---HHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch---hhHHHHHHhHHHhhhhh
Confidence 35666777776643210 0123578999999999999999999999999887754321 11112345678899999
Q ss_pred HHHHhhc
Q 000196 1750 FHSIACA 1756 (1874)
Q Consensus 1750 ~~si~~~ 1756 (1874)
-++|.+.
T Consensus 110 ~kal~l~ 116 (145)
T d1zu2a1 110 QQAVDEQ 116 (145)
T ss_dssp HHHHHHC
T ss_pred hcccccC
Confidence 9999885
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=3.7 Score=35.71 Aligned_cols=87 Identities=7% Similarity=-0.020 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
+.-.++..+..+.+|+ ..+|+..+++-+........ .....+.++.-+|.=..++ .
T Consensus 5 addc~~lG~~~~~~g~---y~~A~~~~~~Al~~~~~~~~---------------~~~~~~~~l~~Lg~~~~~~------g 60 (95)
T d1tjca_ 5 AEDSFELGKVAYTEAD---YYHTELWMEQALRQLDEGEI---------------STIDKVSVLDYLSYAVYQQ------G 60 (95)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCC---------------CSSCHHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHhhhhc---------------cCccHHHHHHHHhhHHHhc------C
Confidence 3445788889999995 78999999987654432111 1122445555555544443 2
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..++.+.+|++|++++|++.+++...+.+..
T Consensus 61 ~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 61 DLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 4678999999999999999999999887644
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.81 E-value=1.3 Score=40.36 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
.++.+..|+++++.+|+...+|+.+|....+. .-...|+..|-++|.+. ....+....+-
T Consensus 32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~------p~~~~a~~~la 91 (112)
T d1hxia_ 32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD------PKDIAVHAALA 91 (112)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHH
T ss_pred hHHHHHHHhhhcccccccchhhhhhhhhhhhh--------------hhHHHhhcccccccccc------cccccchHHHH
Confidence 46788999999999999999999999876541 12348899999999985 23455666777
Q ss_pred HHHHhcCCcHHHHHHHHhc
Q 000196 1774 TLWFNHGATEEVQIALQKG 1792 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~ 1792 (1874)
.+....|+..+-.+.+++.
T Consensus 92 ~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7777777766665555553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=84.44 E-value=2.6 Score=41.38 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhh-------HHHHHHHHhhhHhhcC
Q 000196 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPL-------IARVYLKLGSWKRALP 1686 (1874)
Q Consensus 1614 ~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~a~~~~~~g~w~~~~~ 1686 (1874)
....+.+..++..|+ ..+|+...++.+.-+......... .......+ +|.||+++|+|
T Consensus 16 ~~~~e~G~~~~~~~~---~~~A~~~Y~~al~~~~~~~~~~~~-------~~~~~~~~~~~~~~Nla~~~~~l~~~----- 80 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGK---YVQAVIQYGKIVSWLEMEYGLSEK-------ESKASESFLLAAFLNLAMCYLKLREY----- 80 (168)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCCSCCHH-------HHHHHHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhccchh-------hhhhcchhHHHHHHhHHHHHHHhhhc-----
Confidence 345567777888884 688999988877654322111000 00011122 45555555554
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
++.+..|..+++++|+..++|+..|.....+ .-...|+..|-+++.+.
T Consensus 81 --------~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--------------~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 81 --------TKAVECCDKALGLDSANEKGLYRRGEAQLLM--------------NEFESAKGDFEKVLEVN 128 (168)
T ss_dssp --------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHSC
T ss_pred --------ccchhhhhhhhhcccchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999775541 12358899999999885
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=1.9 Score=40.24 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=68.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000196 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1874)
Q Consensus 1619 ~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~ 1698 (1874)
....++..|+ -.+|+..+++.+.-... ...--..+|.||..+|+| ++.+
T Consensus 10 ~G~~~~~~~~---y~~Ai~~y~~al~~~p~---------------~~~~~~~~a~~~~~~~~~-------------~~A~ 58 (128)
T d1elra_ 10 LGNDAYKKKD---FDTALKHYDKAKELDPT---------------NMTYITNQAAVYFEKGDY-------------NKCR 58 (128)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCH-------------HHHH
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCcc---------------cHHHHHhHHHHHHHcCch-------------HHHH
Confidence 3345667774 68999999887753110 001123356777777666 5678
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
..|.+|++++|++..+|+.+|..+..+-..+.. ......|++.|=+++..
T Consensus 59 ~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-------~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-------EEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhc
Confidence 999999999999999999988877765544322 24567889999888876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=7.8 Score=42.31 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.+--+..+.++.++++.|.....++..++|. +..+-.-.+.++...|.. -.+|+..++..+..-..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~----------~~~a~~~r~~~l~~l~~~--~~eal~~~~~al~~~p~ 110 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQPK 110 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC----------ChHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHHHh
Confidence 567777888899999999999999999988763 356666677777776642 47899988887653110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
. ..--..++.++..+|++ ++.+..|.+|++++|+...+|.+.|.....+=.
T Consensus 111 ~---------------~~a~~~~~~~~~~l~~~-------------~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~- 161 (315)
T d2h6fa1 111 N---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKL- 161 (315)
T ss_dssp C---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-
T ss_pred h---------------hhHHHHHhHHHHhhccH-------------HHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh-
Confidence 0 00011234445444443 457899999999999999999999877665311
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...|++.|-++|.+.
T Consensus 162 -------------~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 162 -------------WDNELQYVDQLLKED 176 (315)
T ss_dssp -------------CTTHHHHHHHHHHHC
T ss_pred -------------hHHHHHHHHHHHHHC
Confidence 114677788888774
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.26 E-value=2.2 Score=43.00 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
.++.+..|.+|++++|++..+|...|..+.++ .-...|+..|-++|.+. .+..+...++=
T Consensus 20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~--------------~~~~~Ai~~~~~al~l~------p~~~~a~~~lg 79 (201)
T d2c2la1 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKM--------------QQPEQALADCRRALELD------GQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHTTSC------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh--------------hhhhhhhHHHHHHHHhC------CCcHHHHHHHH
Confidence 46788999999999999999999999775541 12358999999999885 33456678888
Q ss_pred HHHHhcCCcHHHHHHHHhcc
Q 000196 1774 TLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.+++..|...+....+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 88999999888777776655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.16 E-value=19 Score=38.34 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.|.+-+++.+..|+++.|..+..++.......... ..........+.+....|+ ..+|+..++..+.-...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~----~~~a~~~~~~g~~y~~~~~---~~~A~~~~~~a~~~~~~ 109 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHhCC---cHHHHHHHHHhhHHhhh
Confidence 6789999999999999999999998877642211000 0012344555677777774 67899988876543321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
.......+.++..+|+..... ....++.+..|++|.++.+.. ..+|..+|.+.
T Consensus 110 ----------------~~~~~~~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~ 168 (290)
T d1qqea_ 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (290)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cccchhHHHHHHHHHHhHhhH-----HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence 122345677788888765331 246899999999999876542 24455555443
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.. . .-...|++.|-+++............ -....+..-+.+..|+.......+.+....-|
T Consensus 169 ~~-------~-------g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 169 AL-------D-------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HH-------T-------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HH-------c-------ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 32 1 12357888888887764321111111 12234555566777887777777777765444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.67 E-value=2.6 Score=42.42 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
........+..-+.|+++.|.....++...+|. .+....-.+..+...|+ ..+|+..++..+. +.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----------~~~~~~~lg~~y~~~~~---~~~Ai~~~~~al~-l~- 68 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALE-LD- 68 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-SC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHhhhhh---hhhhhHHHHHHHH-hC-
Confidence 344566778888999999999999998887663 35666667788888885 6889988887542 11
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
+..+++|..+|.....+ ...++.+..|++|.+++|+.
T Consensus 69 --------------------p~~~~a~~~lg~~~~~l------~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 69 --------------------GQSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp --------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------CCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCccc
Confidence 11244566667766655 34678889999999888753
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.13 E-value=43 Score=35.84 Aligned_cols=132 Identities=14% Similarity=0.201 Sum_probs=89.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhhcCccch----hchH
Q 000196 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAENASTVFN----VHVA 193 (1874)
Q Consensus 120 ~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~--~~~~~r~aA~~~l~~la~~~p~~~~----~~l~ 193 (1874)
|...|++|....+-.+.++-.......+..++..+...++-+..+ .-...|..=..+|+.+..+|+..+. ..+.
T Consensus 87 p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~ 166 (321)
T d1w9ca_ 87 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166 (321)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH
T ss_pred hhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHH
Confidence 445688998888877777655422334445555566666666543 3346788888999999999987543 5788
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch---hhHHHHHHHHHHHHHhhccCC
Q 000196 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET---RWRVQWYYRMFEATQDGLGRN 251 (1874)
Q Consensus 194 ~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~---~~~~~~~~~i~~~~~~~l~~~ 251 (1874)
.+++.|.-|+++++..|.+.+.+++..++..+...+. .....++..++..+..-+.|+
T Consensus 167 ~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~ 227 (321)
T d1w9ca_ 167 LVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 8899888899999999999998888887776653221 122334445555555555544
|