Citrus Sinensis ID: 000201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.945 | 0.660 | 0.391 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.946 | 0.662 | 0.381 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.953 | 0.666 | 0.341 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.827 | 0.577 | 0.354 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.142 | 0.254 | 0.340 | 3e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.146 | 0.258 | 0.316 | 2e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.147 | 0.263 | 0.304 | 3e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.165 | 0.294 | 0.282 | 2e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.127 | 0.227 | 0.313 | 1e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.127 | 0.227 | 0.296 | 3e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
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Score = 1218 bits (3152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/1865 (39%), Positives = 1085/1865 (58%), Gaps = 101/1865 (5%)
Query: 73 TAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPL 132
+ ++E + L+ EA +R ++Q + L L L + NP +P LV PL
Sbjct: 828 SKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDIILAKNPSGLTQYIPVLVDSFLPL 887
Query: 133 LQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA---LRLI----VTEEVHVDSDLIPS 185
L+SP+ + L+ C MP AL + LRL+ V ++ +L +
Sbjct: 888 LKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVTLRLLKPECVLDKSWCQEELSVA 946
Query: 186 VGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILL-----SPKRTGLH 240
V A + + R+ G + PL +F+ VFP ++ +L S +
Sbjct: 947 VKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLVFPFLKMVLTEMPHHSEEEEEWM 1003
Query: 241 DDVLQMLYKHMD----PLLP-----------LPRLRMISVLYHVLGV-VPSYQAAIGSAL 284
+LQ+L P P LPR+ M+ +L V+G P Q L
Sbjct: 1004 AQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAMLRLLTWVIGTGSPRLQVLASDTL 1063
Query: 285 NELCLG---------LQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPE 331
LC + EV L + + VR L + +PA T
Sbjct: 1064 TTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRETVLRGLMELHMVLPAPDTDE-KN 1122
Query: 332 NIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEA 390
+ + LW+ D E+ + + AE +W G D D S L + + VR A AEA
Sbjct: 1123 GLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYHEAAVRQAGAEA 1182
Query: 391 LATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-----------GWLGRQGIALALH 439
L+ A+ Y + L +Y + +DA W R G+ALAL+
Sbjct: 1183 LSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGLALALN 1242
Query: 440 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 499
+ L + + + F + AL D + DVR ML+A + ++ HG++NV+ L P+FE +
Sbjct: 1243 KLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKENVNSLLPVFEEF 1302
Query: 500 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 559
L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+S
Sbjct: 1303 L-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVAS 1361
Query: 560 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619
CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A
Sbjct: 1362 CLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAA 1421
Query: 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 679
L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D VREAA+
Sbjct: 1422 LTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADD 1481
Query: 680 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 739
A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVP
Sbjct: 1482 CAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVP 1541
Query: 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 799
KLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL
Sbjct: 1542 KLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLD 1601
Query: 800 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 859
T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P
Sbjct: 1602 TKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTP 1660
Query: 860 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 919
+K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL
Sbjct: 1661 GLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGL 1720
Query: 920 SEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977
+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P
Sbjct: 1721 AEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIP 1780
Query: 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLG
Sbjct: 1781 CILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLG 1840
Query: 1038 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1097
DLLF ++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L V
Sbjct: 1841 DLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAGLYMGRSDTQLVV 1900
Query: 1098 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1157
RQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+ +++R +A R LG+LVRKLGE++
Sbjct: 1901 RQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKI 1960
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217
LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + E
Sbjct: 1961 LPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEE 2020
Query: 1218 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHI 1277
VRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ++++++ VLP++
Sbjct: 2021 VREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAIKSRVVLPYL 2080
Query: 1278 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD--DMDVQSLAKEAA 1335
+PKL P+ N L L+ VAG L HLG ILPA++ A+ + D Q
Sbjct: 2081 VPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQ 2137
Query: 1336 ETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 1395
+ V D+ G ++ LL+ + +R+++A ++ + SK +++S L
Sbjct: 2138 AVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKADYTSHLRSLVSGL 2197
Query: 1396 IVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 1455
I L +DS + +W+AL+ + + Q + I+ + I ++ + + +
Sbjct: 2198 IRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNESKGEH------V 2251
Query: 1456 PGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 1514
PGFCLP K + +LP+ +G+++GS E +E+AA LG +I +TS +L+ V+ ITGPLI
Sbjct: 2252 PGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLI 2311
Query: 1515 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574
RI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS R VR AA AL
Sbjct: 2312 RILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADAL 2371
Query: 1575 GKLSALSTRVDPLVGDLLSSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVL 1633
GKL ++ +VDPL +LL+ ++ + D G+R+ +L AL+ V++ AG V + ++ + S+L
Sbjct: 2372 GKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVIQGAGAKVDAVIRKNIVSLL 2431
Query: 1634 KDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE-LLNLASSPSWAARHGSVLVFAT 1692
++ HD+D+ R+S+A LG + + + +L+ +LQ+ LL S W RHG L +
Sbjct: 2432 LSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQCLLADVSGIDWMVRHGRSLALSV 2491
Query: 1693 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752
+ P + + + + SS ++ P+ + + +G L+ H I++G +
Sbjct: 2492 AVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGVRGMGFLMRHHIETGGGQLPAKL 2551
Query: 1753 DILASVVSALHDDSSEVRRRALSALKSVAKAN--------PSAIMVHVALFGPALAECLK 1804
L V L + SS++R L A K + AN P AI + AL + K
Sbjct: 2552 SSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPPLDPQAIKPILK----ALLDNTK 2602
Query: 1805 DGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKF--------ITGLDARRLSKFPEHSDDS 1856
D +T VR +++ V+ ++ +G E Q K + ++ R L K +D +
Sbjct: 2603 DKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKILDVASLEVLNEVNRRSLKKLASQADST 2662
Query: 1857 EDSEN 1861
E ++
Sbjct: 2663 EQVDD 2667
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Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1826 (38%), Positives = 1056/1826 (57%), Gaps = 59/1826 (3%)
Query: 30 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEAS 88
E+Q+ + ++ K ++A + +K I + KK G+ K+E R+ L +A
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 89 IREKVQGVQRNLSLMLSALGEMAIA--NPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 146
IR+ VQ V L L + MA + NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 147 VKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGL 206
KL C + LD + A I P++ E + L ++I+ +
Sbjct: 952 EKLICCVP---SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHI 1001
Query: 207 TVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVL 266
S L +F + +PII+ L + + + ++++ KH PR MIS L
Sbjct: 1002 RESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSL 1061
Query: 267 YHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVST 326
V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++ +
Sbjct: 1062 IIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYS 1121
Query: 327 RSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNV 383
S + SLW A D + A AE IW D+ K LS S +NV
Sbjct: 1122 PSFVWEDKYIGSLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNV 1178
Query: 384 RLAAAEALATALDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439
+ A A+ E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 440 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 498
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 499 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 558
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 559 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 617
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 677
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737
A+A+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 798 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 918 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1038 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1093 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1152
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1153 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1212
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1213 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVR 1269
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 1270 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQ 1328
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 1329 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 1388
KEAA ++ IDE+G ++L+ L++ +IR + LIG FY + +V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNT--MVTEY 2194
Query: 1389 P-NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 1447
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 1448 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI 1507
IPGFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+
Sbjct: 2254 VST----IPGFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVM 2309
Query: 1508 PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVR 1567
ITGPLI +IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR
Sbjct: 2310 QITGPLILVIGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVR 2369
Query: 1568 SSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 1627
++AA ALG L LS+ VD LV L++ + +D+ +E+ L AL+ + + K V A
Sbjct: 2370 TNAASALGLLMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLD 2428
Query: 1628 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA--ARHG 1685
+ + + D +Y D +R A +G S+C L +L Q + SPS + +R+G
Sbjct: 2429 KAIATIVDFLYQPSDDLRSMVAQTIGASSKCF--TSLTELNQFIKTNLISPSQSVLSRYG 2486
Query: 1686 SVLVFATFLRHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS 1743
L + + + S SP +I+ +++ +DEK P+RE+S +L+ +
Sbjct: 2487 KSLALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----A 2542
Query: 1744 GPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAEC 1802
P T D++ S+ + D SS V AL+ +K K+N ++ + P +
Sbjct: 2543 SPL--TYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRL 2600
Query: 1803 LKDGSTPVRLAAERCAVHAFQLTRGS 1828
+ + P++LAAER VH+ Q+ + S
Sbjct: 2601 KERTNLPLKLAAERTLVHSLQIFKES 2626
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 648/1899 (34%), Positives = 1051/1899 (55%), Gaps = 120/1899 (6%)
Query: 6 QGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKST 65
+GV ++ K++K+ + YE + V + SAK+ +
Sbjct: 794 EGVLWDNVLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA----------------- 836
Query: 66 KKADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQ 121
K K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 837 -KLSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVED 891
Query: 122 LPSLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 892 AIDVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNS 951
Query: 181 DLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLH 240
++ E K+ I+ L + + F +FP++ + + +
Sbjct: 952 S--ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEE 1000
Query: 241 DDV-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQ 292
D+ LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1001 DEAELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLH 1060
Query: 293 PNEVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEK 348
L+ + + H +R A L A++ E +++ ++D +
Sbjct: 1061 STYTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNE 1113
Query: 349 SVAEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLS 407
+ A A I + G D T + L + + ++ ++L LDE+ + Q
Sbjct: 1114 TNASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPK 1173
Query: 408 TLFSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLP 451
L Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1174 ELMRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLL 1230
Query: 452 VIMTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 504
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1231 PFLEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDS 1290
Query: 505 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 564
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL
Sbjct: 1291 LPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPL 1350
Query: 565 MQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 624
++ ++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +
Sbjct: 1351 VKKSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELI 1410
Query: 625 ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 684
++R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +
Sbjct: 1411 SNRQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQI 1470
Query: 685 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744
MSQLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EV
Sbjct: 1471 MSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEV 1530
Query: 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 804
LTD+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+
Sbjct: 1531 LTDSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVH 1590
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
+D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++V
Sbjct: 1591 YLDPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREV 1649
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
L+DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA
Sbjct: 1650 LIDPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILA 1709
Query: 925 ALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 984
LG E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLA
Sbjct: 1710 GLGLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLA 1769
Query: 985 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044
D++E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+A
Sbjct: 1770 DDSELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLA 1829
Query: 1045 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV 1104
G + KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +
Sbjct: 1830 GINRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQI 1888
Query: 1105 WKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1164
WK IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+
Sbjct: 1889 WKAIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPV 1948
Query: 1165 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1224
L +GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A
Sbjct: 1949 LKQGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAE 2008
Query: 1225 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 1284
AF +L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+
Sbjct: 2009 AFDSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKK 2068
Query: 1285 PLSAFNAHALGALAEVAGPGLNFHLGTILPAL----LSAMGDDDMDVQSLAKEAAETVTL 1340
P+SAFNA AL +LA+VAG LN L +IL AL L++ GDD + + A + V L
Sbjct: 2069 PVSAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNG----AIDKVNL 2124
Query: 1341 -VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 1399
V D+EG++ L++ R +A + F++N KL + + I L
Sbjct: 2125 SVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLF 2184
Query: 1400 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 1459
D V AA A + +V+++ K+ S + + ++ R + +P F
Sbjct: 2185 EDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSIAYHSL--------RDVGSQGVNLPAFE 2236
Query: 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 1519
+ + + +LPIFL GL+ G+ + REQ+ALG+ +++ T L+ FV ITGPLIRIIG+
Sbjct: 2237 VAQGVNSILPIFLYGLMHGTMDQREQSALGIADIVLKTEPSKLRPFVTQITGPLIRIIGE 2296
Query: 1520 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLS 1578
RFP +VK AIL TL+II+ K L+PFLPQLQ TF KCL D S+ +RS AA ALG L
Sbjct: 2297 RFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRTFAKCLGDPSSEVIRSRAATALGTLI 2356
Query: 1579 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 1638
L TR+ P++ +L+S + DAG+R+A+L AL V+ +G++++ A + +L ++
Sbjct: 2357 TLQTRLAPIITELVSGARTPDAGVRKAMLNALFAVVSKSGQNMNEASAEAIEQLLDEISA 2416
Query: 1639 HDDDHVRVSAASILGIMSQCMEDGQLADLLQ-ELLNLASSPSWAARHGSVLVFATFLRHN 1697
+H+ V A + G + + D Q LL+ ++L+L + SVL+ ++
Sbjct: 2417 ESSEHM-VICAKLYGALFSHLPDAQAKQLLESKVLSLEIQSEF-----SVLILNAAVKFG 2470
Query: 1698 PSAI---SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 1754
I +S + SI+ +SL+ E + E ALG+ LL I N +V+
Sbjct: 2471 SQKIIELKLSDIVCSIIS--TASLQKE-VTIAENGILALGKALLADIPQSFGNAKNLVEA 2527
Query: 1755 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 1814
L + A S + RR AL ++ V+K N S I H+++ PA+ C++ PV+LAA
Sbjct: 2528 LKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPVKLAA 2587
Query: 1815 ERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHS 1853
E + FQL + K+I L+ R F ++S
Sbjct: 2588 EAAFLALFQLVEDDSVL---NKYIETLEGPRARSFVDYS 2623
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1624 (35%), Positives = 917/1624 (56%), Gaps = 80/1624 (4%)
Query: 252 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 307
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 308 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 367
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 368 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 413
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 414 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 466
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 467 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 526
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 527 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 582
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 642
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 643 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 702
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 703 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 762
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 763 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 823 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 882
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 883 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 942
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 943 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1003 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1062
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1063 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1122
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1123 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1181
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1182 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 1241
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 1242 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 1301
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+ AF A ALG+LAEVA
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVA 2050
Query: 1302 GPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGVESLVSELLKGV 1358
G L L I+ AL+ A+ +D + + A + V L V D+EG+ L+ +++ +
Sbjct: 2051 GSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLL 2110
Query: 1359 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 1418
+ R + + F+ + L PN +S I+ L D D V + ALS ++
Sbjct: 2111 KSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170
Query: 1419 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 1478
V K P+ K+++ A + R+ + + F LP+ +LPIFL GL+ G
Sbjct: 2171 KKVDK---PTLEKLVKPAKQSLALTGRQGQD-----VAAFKLPRGPNCVLPIFLHGLMYG 2222
Query: 1479 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 1538
S + RE++AL + +++ T +LK FV ITGPLIR++G+RF +K+AIL L+++
Sbjct: 2223 SNDEREESALAIADVVSKTPAANLKPFVSVITGPLIRVVGERFSSDIKAAILFALNVLFI 2282
Query: 1539 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLS-SLQ 1596
K + L+PF+PQLQ TF+K L D+T T+R AA ALG L RVDPLV +L++ + Q
Sbjct: 2283 KIPMFLRPFIPQLQRTFVKSLSDATNETLRLRAAKALGALIEHQPRVDPLVIELVTGAKQ 2342
Query: 1597 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656
+D G++ A+L AL V+ AG ++ K + +++++ + +D + V+ A ++G +S
Sbjct: 2343 ATDEGVKTAMLKALLEVIMKAGSKLNENSKTNIVNLVEEEMLGSNDKLAVAYAKLIGSLS 2402
Query: 1657 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 1716
+ + + + +LQ+ + L + ++L +FL+ P+ I + L + + +
Sbjct: 2403 EILSNDEAHKILQDKV-LNADLDGETGKFAILTLNSFLKDAPTHIFNTGLIDEFVSYILN 2461
Query: 1717 SLKDEKFPLREASTKALGRLLLHQ---------------IQSGPANTTVVVDILASVVSA 1761
+++ E T A G+LLL + + G N ++++ L+ V
Sbjct: 2462 AIRSPDVYFGENGTIAAGKLLLLEGEKRSPFVKKDAAEPFKIGDENINLLINELSKAVLQ 2521
Query: 1762 LHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVH 1820
+S++VRR AL ++++A+ I + + GP++ CL+D P++LAAE+ +
Sbjct: 2522 PASNSTDVRRLALVVIRTLARFKFDECIKQYFDVVGPSVFSCLRDPVIPIKLAAEKAYLA 2581
Query: 1821 AFQL 1824
F+L
Sbjct: 2582 LFKL 2585
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 616 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 673
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 674 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 732
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 792
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 793 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 853 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 885
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 610 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 669
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 670 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 726
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 727 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 847 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 883
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 619 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 677
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 736
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 796
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 797 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 856
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 857 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 897
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 634
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 635 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 690 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 748
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 749 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 808
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 867
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 868 PIPEVRSVAARAIGSLIR--GMGEEN 891
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 652 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 710
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 830
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 885
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 886 GMGEEN 891
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 652 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 710
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 830
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 885
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 886 GMGEEN 891
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.992 | 0.702 | 0.873 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.984 | 0.703 | 0.871 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.966 | 0.732 | 0.855 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.964 | 0.732 | 0.841 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.984 | 0.702 | 0.826 | 0.0 | |
| 356571204 | 2870 | PREDICTED: translational activator GCN1- | 0.984 | 0.640 | 0.825 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.991 | 0.708 | 0.830 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.991 | 0.708 | 0.829 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.983 | 0.703 | 0.793 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.991 | 0.672 | 0.771 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3278 bits (8498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1625/1861 (87%), Positives = 1747/1861 (93%), Gaps = 9/1861 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSN--------HSAKRESANRE 52
MLSSEQGVY+AE VA KN +Q+KGRFRMY++QD D V SN HS ++E+A+RE
Sbjct: 762 MLSSEQGVYVAESVATKNMRQAKGRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASRE 821
Query: 53 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAI 112
V+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMAI
Sbjct: 822 VTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAI 881
Query: 113 ANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIV 172
ANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLIV
Sbjct: 882 ANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLIV 941
Query: 173 TEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 231
TEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERIL
Sbjct: 942 TEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERIL 1001
Query: 232 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 291
LS K+TGLHDDVLQ+LY HMDP+LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGL
Sbjct: 1002 LSSKKTGLHDDVLQILYLHMDPILPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGL 1061
Query: 292 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 351
Q +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVA
Sbjct: 1062 QSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVA 1121
Query: 352 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 411
E AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFS
Sbjct: 1122 ELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFS 1181
Query: 412 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 471
LYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVRG
Sbjct: 1182 LYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRG 1241
Query: 472 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 531
RM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKD
Sbjct: 1242 RMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKD 1301
Query: 532 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 591
DPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGE
Sbjct: 1302 DPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGE 1361
Query: 592 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651
RRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRLF
Sbjct: 1362 RRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRLF 1421
Query: 652 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711
EPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT
Sbjct: 1422 EPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1481
Query: 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 771
KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPE
Sbjct: 1482 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPE 1541
Query: 772 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 831
I++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKK
Sbjct: 1542 ISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKK 1601
Query: 832 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891
KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEEN
Sbjct: 1602 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEEN 1661
Query: 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD 951
FPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRD
Sbjct: 1662 FPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRD 1721
Query: 952 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1011
GYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSLP
Sbjct: 1722 GYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSLP 1781
Query: 1012 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1071
LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII
Sbjct: 1782 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1841
Query: 1072 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1131
E LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SL
Sbjct: 1842 EGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSL 1901
Query: 1132 ASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1191
ASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASA
Sbjct: 1902 ASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASA 1961
Query: 1192 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 1251
GKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LED
Sbjct: 1962 GKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLED 2021
Query: 1252 DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGT 1311
DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG
Sbjct: 2022 DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGI 2081
Query: 1312 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAY 1371
+LPALLSAM DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++
Sbjct: 2082 VLPALLSAMSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSF 2141
Query: 1372 LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 1431
LIGYF+KNSKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK
Sbjct: 2142 LIGYFFKNSKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIK 2201
Query: 1432 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLG 1491
++RDA+STSRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLG
Sbjct: 2202 IVRDAVSTSRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLG 2261
Query: 1492 ELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL 1551
ELIEVTSEQ+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL
Sbjct: 2262 ELIEVTSEQALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL 2321
Query: 1552 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 1611
QTTFIKCLQD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALK
Sbjct: 2322 QTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALK 2381
Query: 1612 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 1671
GVL+HAGKSVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL
Sbjct: 2382 GVLQHAGKSVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQEL 2441
Query: 1672 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTK 1731
+L SS SW+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE STK
Sbjct: 2442 SSLDSSLSWSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTK 2501
Query: 1732 ALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791
ALGRLLLH++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H
Sbjct: 2502 ALGRLLLHRVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTH 2561
Query: 1792 VALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPE 1851
+ +FGPALAECLKDG+TPVRLAAERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFPE
Sbjct: 2562 ITIFGPALAECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPE 2621
Query: 1852 H 1852
H
Sbjct: 2622 H 2622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3259 bits (8451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1614/1853 (87%), Positives = 1735/1853 (93%), Gaps = 16/1853 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLSSEQGVY+AE VA KN +Q+K +NHS ++E+A+REV+G GKKD
Sbjct: 762 MLSSEQGVYVAESVATKNMRQAKE---------------TNHSGRKETASREVTGVGKKD 806
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
IGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS
Sbjct: 807 IGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHS 866
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV
Sbjct: 867 ELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLL 926
Query: 181 DLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGL 239
+LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGL
Sbjct: 927 ELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGL 986
Query: 240 HDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASA 299
HDDVLQ+LY HMDP+LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA A
Sbjct: 987 HDDVLQILYLHMDPILPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPA 1046
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWD 359
L+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWD
Sbjct: 1047 LYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWD 1106
Query: 360 RYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGL 419
R GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G
Sbjct: 1107 RCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGF 1166
Query: 420 GGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIM 479
G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+
Sbjct: 1167 GEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGIL 1226
Query: 480 IIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 539
IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV
Sbjct: 1227 IIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1286
Query: 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGL
Sbjct: 1287 EKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGL 1346
Query: 600 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQML 659
AGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQML
Sbjct: 1347 AGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQML 1406
Query: 660 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
PLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL
Sbjct: 1407 PLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1466
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTL
Sbjct: 1467 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTL 1526
Query: 780 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839
LMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN
Sbjct: 1527 LMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1586
Query: 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899
MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWL
Sbjct: 1587 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWL 1646
Query: 900 LDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
LD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKY
Sbjct: 1647 LDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKY 1706
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
LPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVED
Sbjct: 1707 LPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVED 1766
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKR
Sbjct: 1767 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKR 1826
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
NEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERR
Sbjct: 1827 NEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERR 1886
Query: 1140 QVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199
QVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSF
Sbjct: 1887 QVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSF 1946
Query: 1200 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 1259
MDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTAL
Sbjct: 1947 MDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTAL 2006
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
DGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSA
Sbjct: 2007 DGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSA 2066
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
M DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KN
Sbjct: 2067 MSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKN 2126
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
SKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+ST
Sbjct: 2127 SKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVST 2186
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
SRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSE
Sbjct: 2187 SRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSE 2246
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
Q+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL
Sbjct: 2247 QALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2306
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
QD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGK
Sbjct: 2307 QDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGK 2366
Query: 1620 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679
SVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL +L SS S
Sbjct: 2367 SVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLS 2426
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
W+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE STKALGRLLLH
Sbjct: 2427 WSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLH 2486
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPAL
Sbjct: 2487 RVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPAL 2546
Query: 1800 AECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 1852
AECLKDG+TPVRLAAERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2547 AECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPEH 2599
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3184 bits (8255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1586/1853 (85%), Positives = 1703/1853 (91%), Gaps = 50/1853 (2%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+REV+G GKKD
Sbjct: 644 MLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASREVTGVGKKD 693
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
IGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS
Sbjct: 694 IGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHS 753
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV
Sbjct: 754 ELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLL 813
Query: 181 DLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGL 239
+LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 814 ELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP-------------- 859
Query: 240 HDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASA 299
VLYH LGVVP+YQA+IG ALNELCLGLQ +EVA A
Sbjct: 860 -------------------------VLYHALGVVPTYQASIGPALNELCLGLQSDEVAPA 894
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWD 359
L+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWD
Sbjct: 895 LYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWD 954
Query: 360 RYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGL 419
R GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G
Sbjct: 955 RCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGF 1014
Query: 420 GGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIM 479
G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+
Sbjct: 1015 GEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGIL 1074
Query: 480 IIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 539
IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV
Sbjct: 1075 IIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1134
Query: 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGL
Sbjct: 1135 EKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGL 1194
Query: 600 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQML 659
AGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQML
Sbjct: 1195 AGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQML 1254
Query: 660 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
PLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL
Sbjct: 1255 PLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1314
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTL
Sbjct: 1315 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTL 1374
Query: 780 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839
LMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN
Sbjct: 1375 LMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1434
Query: 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899
MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWL
Sbjct: 1435 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWL 1494
Query: 900 LDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
LD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKY
Sbjct: 1495 LDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKY 1554
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
LPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVED
Sbjct: 1555 LPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVED 1614
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKR
Sbjct: 1615 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKR 1674
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
NEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERR
Sbjct: 1675 NEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERR 1734
Query: 1140 QVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199
QVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSF
Sbjct: 1735 QVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSF 1794
Query: 1200 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 1259
MDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTAL
Sbjct: 1795 MDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTAL 1854
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
DGLKQILSVRTTAVLPHILPKLVHLPL+AFNAHALGALAEVAGPGLNFHLG +LPALLSA
Sbjct: 1855 DGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHALGALAEVAGPGLNFHLGIVLPALLSA 1914
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
M DDD DVQ LAK+AAETV LVIDEEGVE L+SELLKGVGDNQASIRRSS++LIGYF+KN
Sbjct: 1915 MSDDDTDVQKLAKKAAETVVLVIDEEGVEGLISELLKGVGDNQASIRRSSSFLIGYFFKN 1974
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
SKLYLVDEAPNMI+TLIVLLSDSDS TVA AWEALSRV SVPKEV PSYIK++RDA+ST
Sbjct: 1975 SKLYLVDEAPNMITTLIVLLSDSDSATVAVAWEALSRVTNSVPKEVLPSYIKIVRDAVST 2034
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
SRDKERRKKKGGP+LIPGFCLPKALQPLLP+FLQGLISGSAELREQAA GLGELIEVTSE
Sbjct: 2035 SRDKERRKKKGGPVLIPGFCLPKALQPLLPVFLQGLISGSAELREQAAQGLGELIEVTSE 2094
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
Q+LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL
Sbjct: 2095 QALKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2154
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
QD+TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD G+REAILTALKGVL+HAGK
Sbjct: 2155 QDNTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDGGVREAILTALKGVLQHAGK 2214
Query: 1620 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679
SVS AV+ RVY +LKD V+HDDD VR SAASILGI+SQ MEDGQL+DLLQEL +L SS S
Sbjct: 2215 SVSVAVRTRVYVLLKDFVHHDDDQVRNSAASILGILSQYMEDGQLSDLLQELSSLDSSLS 2274
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
W+ARHGS+L ++ LRH+PS+I SP+F S++ LK +LKDEKFP+RE STKALGRLLLH
Sbjct: 2275 WSARHGSILTISSMLRHSPSSICTSPVFPSVVYCLKDNLKDEKFPVRETSTKALGRLLLH 2334
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
++QS P+NT +D+L+ +VSAL DDSSEVRRRALSALK+VAKANPSA+M H+ +FGPAL
Sbjct: 2335 RVQSDPSNTAAHLDVLSPMVSALQDDSSEVRRRALSALKAVAKANPSALMTHITIFGPAL 2394
Query: 1800 AECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 1852
AECLKDG+TPVRLAAERCA+HAFQLT+G+E +Q AQKFITGLDARRLSKFPEH
Sbjct: 2395 AECLKDGNTPVRLAAERCALHAFQLTKGTENVQAAQKFITGLDARRLSKFPEH 2447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3105 bits (8049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1557/1851 (84%), Positives = 1680/1851 (90%), Gaps = 51/1851 (2%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE RE +G G+KD
Sbjct: 643 MLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGREATGVGRKD 691
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA++NPVFAHS
Sbjct: 692 AGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMAVSNPVFAHS 751
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
QLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI T EV V
Sbjct: 752 QLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLIATAEVSVLP 811
Query: 181 DLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGL 239
+LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 812 NLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP-------------- 857
Query: 240 HDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASA 299
LYHVLGVVP+YQA++G+ALNELCLGL+ +EVASA
Sbjct: 858 -------------------------ALYHVLGVVPAYQASVGAALNELCLGLKADEVASA 892
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWD 359
L+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +AEAAEDIWD
Sbjct: 893 LYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLIAEAAEDIWD 952
Query: 360 RYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGL 419
RYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLFSLYIRD
Sbjct: 953 RYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLFSLYIRDATF 1012
Query: 420 GGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIM 479
G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGIM
Sbjct: 1013 GEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGIM 1072
Query: 480 IIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 539
IIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV
Sbjct: 1073 IIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1132
Query: 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYGERRGAAFGL
Sbjct: 1133 EKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYGERRGAAFGL 1192
Query: 600 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQML 659
AG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+LFEPYVIQML
Sbjct: 1193 AGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKLFEPYVIQML 1252
Query: 660 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
PLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL
Sbjct: 1253 PLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1312
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
GAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI+SLVPTL
Sbjct: 1313 GAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEISSLVPTL 1372
Query: 780 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839
LM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETKKKA+QIVGN
Sbjct: 1373 LMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETKKKASQIVGN 1432
Query: 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899
MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL
Sbjct: 1433 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWL 1492
Query: 900 LDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVRDGYLTLFK+
Sbjct: 1493 FDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVRDGYLTLFKF 1552
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED
Sbjct: 1553 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1612
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
GIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAIIEVLGR+KR
Sbjct: 1613 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAIIEVLGREKR 1672
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
NEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISSLASSSSERR
Sbjct: 1673 NEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISSLASSSSERR 1732
Query: 1140 QVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199
QVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMASAGKSQLL+F
Sbjct: 1733 QVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMASAGKSQLLNF 1792
Query: 1200 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 1259
MDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTAL
Sbjct: 1793 MDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDETSDTAL 1852
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
DGLKQILSVRT AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN HL T+LPALLSA
Sbjct: 1853 DGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNVHLSTVLPALLSA 1912
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
MG +D DVQ+LAKEAAETV LVIDEEGVE L++ELLKGVGD+ AS+RRSS+YLIGYF+KN
Sbjct: 1913 MGGEDKDVQTLAKEAAETVVLVIDEEGVEYLIAELLKGVGDSMASVRRSSSYLIGYFFKN 1972
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
SKLYL DEAPNMISTLIVLLSD DS TVA AWEALSRVV+SVPKEV PSY+K++RDA+ST
Sbjct: 1973 SKLYLADEAPNMISTLIVLLSDMDSATVAIAWEALSRVVSSVPKEVLPSYLKLVRDAVST 2032
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
SRDKERRKKKGGP+LIPGFCLPKALQPL+PIFLQGLISGSA+LREQAALGLGELIEVTSE
Sbjct: 2033 SRDKERRKKKGGPVLIPGFCLPKALQPLVPIFLQGLISGSADLREQAALGLGELIEVTSE 2092
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
Q+LK+FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCL
Sbjct: 2093 QALKDFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCL 2152
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
QD+TRTVR+SAALALGKLSALSTRVDPLV DLLSSLQ SDAG+REAIL ALKGVLK+AGK
Sbjct: 2153 QDNTRTVRTSAALALGKLSALSTRVDPLVSDLLSSLQASDAGVREAILMALKGVLKYAGK 2212
Query: 1620 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679
SVS+AVKIRV+S L DL++HDDD VR+S+ASILGI SQ ME QL DLLQ+L N ASSPS
Sbjct: 2213 SVSNAVKIRVFSQLNDLIHHDDDQVRISSASILGITSQYMEAAQLIDLLQQLSNSASSPS 2272
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
W +RHGSVL ++ LRHNPS + S F SI+D LK LKDEKFPLR+ S +ALGRLLLH
Sbjct: 2273 WVSRHGSVLTISSLLRHNPSLVITSAEFPSIIDCLKDGLKDEKFPLRDTSIEALGRLLLH 2332
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
QI S + T+ VDIL+S VSAL DDSSEVRRRALSALK+VAKA+P I HV++ GPAL
Sbjct: 2333 QIYSDQSKTSSYVDILSSTVSALRDDSSEVRRRALSALKAVAKASPPFITTHVSIIGPAL 2392
Query: 1800 AECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFP 1850
AECL+D STPVRLAAERCAVH FQLT+G+E IQ +QKFITGLDARRLSK+P
Sbjct: 2393 AECLRDSSTPVRLAAERCAVHTFQLTKGTENIQASQKFITGLDARRLSKYP 2443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3086 bits (8002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1531/1852 (82%), Positives = 1704/1852 (92%), Gaps = 14/1852 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLS+EQGVY+AE V AKNTKQ DH SNHS +R+ +RE +GAGKKD
Sbjct: 765 MLSTEQGVYVAESVTAKNTKQ--------------DHTRSNHSVRRDQPSREAAGAGKKD 810
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
GK+ KKADKGKTAKEEARELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS
Sbjct: 811 TGKAAKKADKGKTAKEEARELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHS 870
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
+LPS+VKFV+PL++SPIV D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+
Sbjct: 871 RLPSMVKFVEPLMRSPIVSDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLL 930
Query: 181 DLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLH 240
DL+PSV E N+ LFERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T H
Sbjct: 931 DLVPSVTEEEFNERPHGLFERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFH 990
Query: 241 DDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASAL 300
DDVL++ Y H+DP LPLPR+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL
Sbjct: 991 DDVLRIFYLHLDPHLPLPRIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASAL 1050
Query: 301 HGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDR 360
+GVY KDVHVRMACLNAVKCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD
Sbjct: 1051 YGVYAKDVHVRMACLNAVKCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDH 1110
Query: 361 YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLG 420
YG+DFGTD+SGL+KALSH NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G
Sbjct: 1111 YGFDFGTDFSGLYKALSHINYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVG 1170
Query: 421 GDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMI 480
DNVDAGWLGRQGIALALH+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+I
Sbjct: 1171 DDNVDAGWLGRQGIALALHAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILI 1230
Query: 481 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 540
IDK+G+DNVSLLFPIFENYLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD
Sbjct: 1231 IDKNGKDNVSLLFPIFENYLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1290
Query: 541 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 600
KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLA
Sbjct: 1291 KLLDVLNTPSEAVQRAVSACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLA 1350
Query: 601 GVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660
G+VKGFGIS LKKY I TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLP
Sbjct: 1351 GLVKGFGISCLKKYRIVITLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLP 1410
Query: 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 720
LLLV+FSDQV AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG
Sbjct: 1411 LLLVSFSDQVNAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1470
Query: 721 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLL 780
AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL
Sbjct: 1471 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLL 1530
Query: 781 MGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 840
GL+DPN+HTKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNM
Sbjct: 1531 KGLSDPNEHTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNM 1590
Query: 841 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900
CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL
Sbjct: 1591 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLF 1650
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 960
D LKSDNSNVERSGAAQGLSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYL
Sbjct: 1651 DTLKSDNSNVERSGAAQGLSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYL 1710
Query: 961 PRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1020
PRSLGVQFQNYL QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG
Sbjct: 1711 PRSLGVQFQNYLPQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1770
Query: 1021 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
IFND+WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRN
Sbjct: 1771 IFNDSWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRN 1830
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1140
EVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQ
Sbjct: 1831 EVLAALYMVRADVSLSVRQAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQ 1890
Query: 1141 VAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1200
VAGR+LGELVRKLGERVLP IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM
Sbjct: 1891 VAGRSLGELVRKLGERVLPLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFM 1950
Query: 1201 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260
+ELIPTIRTALCDS+ EVRESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALD
Sbjct: 1951 NELIPTIRTALCDSVSEVRESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALD 2010
Query: 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 1320
GLKQILSVRT+AVLPHILPKLVH PLSAFNAHALGALAEVAGPGL+FHL T+LP LLSAM
Sbjct: 2011 GLKQILSVRTSAVLPHILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLCTVLPPLLSAM 2070
Query: 1321 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS 1380
GDDD +VQ+LAKEA+ETV LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNS
Sbjct: 2071 GDDDKEVQTLAKEASETVVLVIDEEGIEPLMSELVKGVNDSQAAVRRSSSYLIGYFFKNS 2130
Query: 1381 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 1440
KLYLVDEAPNMISTLI+LLSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STS
Sbjct: 2131 KLYLVDEAPNMISTLIILLSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTS 2190
Query: 1441 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 1500
RDKERRKKKGGPILIPGFCLPKALQP+LPIFLQGLISGSAELREQAALGLGELIEVTSEQ
Sbjct: 2191 RDKERRKKKGGPILIPGFCLPKALQPILPIFLQGLISGSAELREQAALGLGELIEVTSEQ 2250
Query: 1501 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560
SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTL+ +I+KGGI+LKPFLPQLQTTF+KCLQ
Sbjct: 2251 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLTTMIKKGGISLKPFLPQLQTTFVKCLQ 2310
Query: 1561 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620
DSTRTVRSSAALALGKLS LSTRVDPLV DLLSSLQ SD G+ EAILTALKGVLKHAGK+
Sbjct: 2311 DSTRTVRSSAALALGKLSGLSTRVDPLVSDLLSSLQGSDGGVSEAILTALKGVLKHAGKN 2370
Query: 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680
VSSAV+ R YSVLK+L++ DD+ VR A+SILGI++Q +ED QL +L+QEL +LA+SPSW
Sbjct: 2371 VSSAVRTRFYSVLKELIHDDDEIVRTYASSILGILTQYLEDVQLTELIQELSSLANSPSW 2430
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
RHGS+L ++ +NP+ I S LF +I+D L+ +LKDEKFPLRE STKALGRLLL++
Sbjct: 2431 PPRHGSILTISSLFHYNPATICSSSLFSTIVDCLRDTLKDEKFPLRETSTKALGRLLLYR 2490
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
Q P++T + D+L+ +VS+ HD+SSEVRRRALSA+K+VAKANPSAIM H + GPALA
Sbjct: 2491 SQVDPSDTLLYKDVLSLLVSSTHDESSEVRRRALSAIKAVAKANPSAIMSHSTIVGPALA 2550
Query: 1801 ECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 1852
EC+KDG+TPVRLAAERCA+HAFQLT+GSE +Q AQK+ITGLDARRLSKFPE+
Sbjct: 2551 ECMKDGNTPVRLAAERCALHAFQLTKGSENVQAAQKYITGLDARRLSKFPEY 2602
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571204|ref|XP_003553769.1| PREDICTED: translational activator GCN1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3068 bits (7955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1529/1852 (82%), Positives = 1699/1852 (91%), Gaps = 14/1852 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
ML +EQGVY+AE V AKNTKQ D+ SNHS KR+ +RE +GAGKKD
Sbjct: 1019 MLFTEQGVYVAESVTAKNTKQ--------------DNTRSNHSVKRDQPSREAAGAGKKD 1064
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
GK+ KKADKGKTAKEEARELLL EEAS+R++V+ +Q+NLSLML LG+MA AN VFAHS
Sbjct: 1065 TGKAAKKADKGKTAKEEARELLLKEEASVRDRVREIQKNLSLMLRTLGDMATANSVFAHS 1124
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
+LPS+VKFV+PL++SPIV D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+
Sbjct: 1125 RLPSMVKFVEPLMRSPIVSDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLL 1184
Query: 181 DLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLH 240
DL+PSV E N+ LFERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T H
Sbjct: 1185 DLVPSVAEEEANERPHGLFERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFH 1244
Query: 241 DDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASAL 300
DDVL++ Y H+DP LPLPR+RM+SVLYHVLGVVP+YQA IG ALNEL LGLQP EVASAL
Sbjct: 1245 DDVLRIFYLHLDPHLPLPRIRMLSVLYHVLGVVPAYQALIGPALNELSLGLQPAEVASAL 1304
Query: 301 HGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDR 360
+GVY KDVHVRMACLNAVKCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD
Sbjct: 1305 NGVYAKDVHVRMACLNAVKCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDH 1364
Query: 361 YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLG 420
YG+DFGTD+SGL+KAL+H NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYIRD+G+G
Sbjct: 1365 YGFDFGTDFSGLYKALAHINYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYIRDMGVG 1424
Query: 421 GDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMI 480
NVDAGWLGRQGIALALHSAAD+L TKDLPV+MTFLISRALAD NADVRGRM+NAGI+I
Sbjct: 1425 DVNVDAGWLGRQGIALALHSAADILGTKDLPVVMTFLISRALADPNADVRGRMINAGILI 1484
Query: 481 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 540
IDK+G+DNVSLLFPIFENYLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD
Sbjct: 1485 IDKNGKDNVSLLFPIFENYLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1544
Query: 541 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 600
KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A LVSRL+DQ+MKS+KYGERRGAAFGLA
Sbjct: 1545 KLLDVLNTPSEAVQRAVSACLSPLMQSKQDDAAALVSRLMDQMMKSEKYGERRGAAFGLA 1604
Query: 601 GVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660
G+VKGFGIS LKKY I TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLP
Sbjct: 1605 GLVKGFGISCLKKYRIVITLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLP 1664
Query: 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 720
LLLV+FSDQV AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG
Sbjct: 1665 LLLVSFSDQVNAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1724
Query: 721 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLL 780
AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL
Sbjct: 1725 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLL 1784
Query: 781 MGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 840
GL+DPN+HTKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNM
Sbjct: 1785 KGLSDPNEHTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNM 1844
Query: 841 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900
CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL
Sbjct: 1845 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLF 1904
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 960
D LKSDNSNVERSGAAQGLSEVLAALG +FEH+LPDIIRNCSHQ+ASVRDGYLTLFKYL
Sbjct: 1905 DTLKSDNSNVERSGAAQGLSEVLAALGIEFFEHVLPDIIRNCSHQKASVRDGYLTLFKYL 1964
Query: 961 PRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1020
PRSLGVQFQNYL QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG
Sbjct: 1965 PRSLGVQFQNYLPQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 2024
Query: 1021 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
IFND+WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRN
Sbjct: 2025 IFNDSWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRN 2084
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1140
EVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQ
Sbjct: 2085 EVLAALYMVRADVSLSVRQAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQ 2144
Query: 1141 VAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1200
VAGR+LGELVRKLGERVLP IIPILS+GL DP++SRRQGVC+GLSEVMASA KSQLL+FM
Sbjct: 2145 VAGRSLGELVRKLGERVLPLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAAKSQLLTFM 2204
Query: 1201 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260
+ELIPTIRTALCDS+ EVRESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALD
Sbjct: 2205 NELIPTIRTALCDSVSEVRESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALD 2264
Query: 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 1320
GLKQILSVRT+AVLPHILPKLVH PLSAFNAHALGALA VAGPGL+FHL T+LP LLSAM
Sbjct: 2265 GLKQILSVRTSAVLPHILPKLVHPPLSAFNAHALGALAVVAGPGLDFHLCTVLPPLLSAM 2324
Query: 1321 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS 1380
GDDD +VQ+LAKEAAETV LVIDEEG+E L+SEL+KGV D+QA++RRSS+YLIGYF+KNS
Sbjct: 2325 GDDDKEVQTLAKEAAETVVLVIDEEGIEPLISELVKGVNDSQAAVRRSSSYLIGYFFKNS 2384
Query: 1381 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 1440
KLYLVDEAPNMISTLI+LLSDSDS+TV AWEALSRV+ SVPKEV PSYIK++RDA+STS
Sbjct: 2385 KLYLVDEAPNMISTLIILLSDSDSSTVTVAWEALSRVIISVPKEVLPSYIKLVRDAVSTS 2444
Query: 1441 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 1500
RDKERRKKKGGP+LIPGFCLPKALQP+LPIFLQGLISGSAELREQAALGLGELIEVTSEQ
Sbjct: 2445 RDKERRKKKGGPVLIPGFCLPKALQPILPIFLQGLISGSAELREQAALGLGELIEVTSEQ 2504
Query: 1501 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560
SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTL+ +I+KGGI+LKPFLPQLQTTF+KCLQ
Sbjct: 2505 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLTTMIKKGGISLKPFLPQLQTTFVKCLQ 2564
Query: 1561 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620
DSTRTVRSSAALALGKLS LSTRVDPLV DLLSSLQ SD G+R+AILTALKGVLKHAGK+
Sbjct: 2565 DSTRTVRSSAALALGKLSGLSTRVDPLVSDLLSSLQGSDGGVRDAILTALKGVLKHAGKN 2624
Query: 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680
+SSAV+ R YS+LKDL++ DDD VR A+SILGI++Q +ED QL +L+QEL +LA+S SW
Sbjct: 2625 LSSAVRTRFYSILKDLIHDDDDRVRTYASSILGILTQYLEDVQLTELIQELSSLANSSSW 2684
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
RHGS+L ++ L +NP+ I S LF +I+D L+ +LKDEKFPLRE STKALGRLLL++
Sbjct: 2685 PPRHGSILTISSLLHYNPATICSSSLFPTIVDCLRDTLKDEKFPLRETSTKALGRLLLYR 2744
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
Q P++T + D+L+ +VS+ HDDSSEVRRRALSA+K+VAKANPSAIM + GPALA
Sbjct: 2745 SQVDPSDTLLYKDVLSLLVSSTHDDSSEVRRRALSAIKAVAKANPSAIMSLGTIVGPALA 2804
Query: 1801 ECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 1852
EC+KDG+TPVRLAAERCA+HAFQLT+GSE +Q AQK+ITGLDARRLSKFPE+
Sbjct: 2805 ECMKDGNTPVRLAAERCALHAFQLTKGSENVQAAQKYITGLDARRLSKFPEY 2856
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3068 bits (7954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1551/1867 (83%), Positives = 1700/1867 (91%), Gaps = 17/1867 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLSSEQGVY+AE +++ +K+SK SN+S +RE +RE SG GKKD
Sbjct: 761 MLSSEQGVYVAESISSSISKESKKN------------SSSNNSIRREPTSRESSGLGKKD 808
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
GK KK DKGKTAKEEARELLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHS
Sbjct: 809 AGKFAKKPDKGKTAKEEARELLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHS 868
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
QL S+VKFVDPLL+SPIV DVAYE LVKLSRC A PLCN ALDIATALR+I T+ H+
Sbjct: 869 QLSSMVKFVDPLLRSPIVNDVAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLL 928
Query: 181 DLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGL 239
++IPSVGEA N SL + ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGL
Sbjct: 929 NMIPSVGEAEANGSSSLGILERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGL 988
Query: 240 HDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASA 299
HDDVL++LY HMDPLLPLPRLRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASA
Sbjct: 989 HDDVLRVLYLHMDPLLPLPRLRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASA 1048
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWD 359
L+GV+ KDVHVR+ACL AVKCIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWD
Sbjct: 1049 LNGVFAKDVHVRIACLKAVKCIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWD 1108
Query: 360 RYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGL 419
RYGYDFGTDYSGLFKALSH+NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D
Sbjct: 1109 RYGYDFGTDYSGLFKALSHANYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASS 1168
Query: 420 GGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIM 479
GG VDAGW GRQGIALAL+SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIM
Sbjct: 1169 GGGTVDAGWFGRQGIALALYSAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIM 1228
Query: 480 IIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 539
IIDKHGR++VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVV
Sbjct: 1229 IIDKHGRESVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVV 1288
Query: 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
DKLLDVLNTPSEAVQRAVS+CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGL
Sbjct: 1289 DKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGL 1348
Query: 600 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQML 659
AGVVKGFGI+SLKKYGIA+ LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI ML
Sbjct: 1349 AGVVKGFGITSLKKYGIASVLRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILML 1408
Query: 660 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
PLLLV+FSDQVVAVREAAECAARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLL
Sbjct: 1409 PLLLVSFSDQVVAVREAAECAARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1468
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTL
Sbjct: 1469 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTL 1528
Query: 780 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839
LMGLTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GN
Sbjct: 1529 LMGLTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGN 1588
Query: 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899
MCSLVTEPKDMIPY GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL
Sbjct: 1589 MCSLVTEPKDMIPYTGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWL 1648
Query: 900 LDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
D LKS+NSNVERSGAAQGLSEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKY
Sbjct: 1649 FDTLKSENSNVERSGAAQGLSEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKY 1708
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVED
Sbjct: 1709 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVED 1768
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
GIFND+WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR
Sbjct: 1769 GIFNDSWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKR 1828
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
+E+L+ALYMVR+DVS+SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERR
Sbjct: 1829 DEILSALYMVRTDVSISVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERR 1888
Query: 1140 QVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199
QVAGRALGELVRKLGERVLP IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSF
Sbjct: 1889 QVAGRALGELVRKLGERVLPLIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSF 1948
Query: 1200 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 1259
MDELIPTIRTALCDS+ EVRESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TAL
Sbjct: 1949 MDELIPTIRTALCDSMPEVRESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETAL 2008
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
DGLKQILSVRTTAVLPHILPKLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSA
Sbjct: 2009 DGLKQILSVRTTAVLPHILPKLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSA 2068
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
MG DD +VQ LAKEAAETV LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KN
Sbjct: 2069 MGGDDEEVQKLAKEAAETVVLVIDEDGAEFLISELLKGVSDNQAAIRRSSSYLIGYFFKN 2128
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
SKLYLVDEAPN+ISTLIVLLSDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+ST
Sbjct: 2129 SKLYLVDEAPNLISTLIVLLSDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVST 2188
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
SRDKERRK+KGG ILIPG CLPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSE
Sbjct: 2189 SRDKERRKRKGGAILIPGLCLPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSE 2248
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
Q LKEFVI ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCL
Sbjct: 2249 QVLKEFVIQITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCL 2308
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
QD+TRTVRSSAALALGKLSALSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK
Sbjct: 2309 QDNTRTVRSSAALALGKLSALSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGK 2368
Query: 1620 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679
+VSS V+ RVY++LKDL+ +DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS S
Sbjct: 2369 TVSSGVRTRVYTLLKDLIRQEDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-S 2427
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
W ARHGS+L ++ LRH PSA+ +F SIL LK++LKDEKFP+RE STKALGRLLLH
Sbjct: 2428 WHARHGSMLTISSILRHKPSAVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLH 2487
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
QIQ A +DIL S+VSAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPAL
Sbjct: 2488 QIQRSSATN---LDILTSLVSALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPAL 2544
Query: 1800 AECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSEDS 1859
AECL+DGSTPVRLAAERCA+H FQLT+GSE +Q AQKFITGL+ARRLSK PE SDDSEDS
Sbjct: 2545 AECLRDGSTPVRLAAERCALHCFQLTKGSENVQAAQKFITGLEARRLSKLPEQSDDSEDS 2604
Query: 1860 ENDTASG 1866
E ++ASG
Sbjct: 2605 EAESASG 2611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3064 bits (7943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1549/1867 (82%), Positives = 1698/1867 (90%), Gaps = 17/1867 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLSSEQGVY+AE +++ +K+SK SN+S +RE +RE SG GKKD
Sbjct: 761 MLSSEQGVYVAESISSSISKESKKN------------SSSNNSIRREPTSRESSGLGKKD 808
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
GK KK DKGKTAKEEARELLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHS
Sbjct: 809 AGKFAKKPDKGKTAKEEARELLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHS 868
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
QL S+VKFVDPLL+SPIV DVAYE LVKLSRC A PLCN ALDIATALR+I T+ H+
Sbjct: 869 QLSSMVKFVDPLLRSPIVNDVAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLL 928
Query: 181 DLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGL 239
++IPSVGEA N SL + ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGL
Sbjct: 929 NMIPSVGEAEANGSSSLGILERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGL 988
Query: 240 HDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASA 299
HDDVL++LY HMDPLLPLPRLRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASA
Sbjct: 989 HDDVLRVLYLHMDPLLPLPRLRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASA 1048
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWD 359
L+GV+ KDVHVR+ACL AVKCIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWD
Sbjct: 1049 LNGVFAKDVHVRIACLKAVKCIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWD 1108
Query: 360 RYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGL 419
RYGYDFGTDYSGLFKALSH+NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D
Sbjct: 1109 RYGYDFGTDYSGLFKALSHANYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASS 1168
Query: 420 GGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIM 479
GG VDAGW GRQGIALAL+SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIM
Sbjct: 1169 GGGTVDAGWFGRQGIALALYSAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIM 1228
Query: 480 IIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 539
IIDKHGR++VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVV
Sbjct: 1229 IIDKHGRESVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVV 1288
Query: 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
DKLLDVLNTPSEAVQRAVS+CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGL
Sbjct: 1289 DKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGL 1348
Query: 600 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQML 659
AGVVKGFGI+SLKKYGIA+ LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI ML
Sbjct: 1349 AGVVKGFGITSLKKYGIASVLRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILML 1408
Query: 660 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
PLLLV+FSDQVVAVREAAECAARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLL
Sbjct: 1409 PLLLVSFSDQVVAVREAAECAARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1468
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTL
Sbjct: 1469 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTL 1528
Query: 780 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839
LMGLTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GN
Sbjct: 1529 LMGLTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGN 1588
Query: 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899
MCSLVTEPKDMIPY GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL
Sbjct: 1589 MCSLVTEPKDMIPYTGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWL 1648
Query: 900 LDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
D LKS+NSNVERSGAAQGLSEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKY
Sbjct: 1649 FDTLKSENSNVERSGAAQGLSEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKY 1708
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVED
Sbjct: 1709 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVED 1768
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
GIFND+WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR
Sbjct: 1769 GIFNDSWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKR 1828
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
+E+L+ALYMVR+DVS+SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERR
Sbjct: 1829 DEILSALYMVRTDVSISVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERR 1888
Query: 1140 QVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199
QVAGRALGELVRKLGERVLP IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSF
Sbjct: 1889 QVAGRALGELVRKLGERVLPLIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSF 1948
Query: 1200 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 1259
MDELIPTIRTALCDS+ EVRESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TAL
Sbjct: 1949 MDELIPTIRTALCDSMPEVRESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETAL 2008
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
DGLKQILSVRTTAVLPHILPKLVH PLSAFNAHALGALAEVAGP L HLGT+LPALLSA
Sbjct: 2009 DGLKQILSVRTTAVLPHILPKLVHTPLSAFNAHALGALAEVAGPSLYIHLGTVLPALLSA 2068
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
MG DD +VQ LAKEAAETV LVIDE+G E L+SELLKGV DNQA+IRRSS+YLIGYF+KN
Sbjct: 2069 MGGDDEEVQKLAKEAAETVVLVIDEDGAEFLISELLKGVSDNQATIRRSSSYLIGYFFKN 2128
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
SKLYLVDEAPN+ISTLIVLLSDSDS TV AWEALSRVV+S+PKE PSYIK++RDA+ST
Sbjct: 2129 SKLYLVDEAPNLISTLIVLLSDSDSATVVVAWEALSRVVSSIPKETLPSYIKLVRDAVST 2188
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
SRDKERRK+KGG ILIPG CLPKALQPLLPIFLQGLISGSAE REQAALGLGELIE+TSE
Sbjct: 2189 SRDKERRKRKGGAILIPGLCLPKALQPLLPIFLQGLISGSAETREQAALGLGELIEMTSE 2248
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
Q LKEFVI ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG+ALKPFLPQLQTTFIKCL
Sbjct: 2249 QVLKEFVIQITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGMALKPFLPQLQTTFIKCL 2308
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
QD+TRTVRSSAALALGKLSALSTR+DPLVGDLLSSLQ SD GIREAILTALKGV+KHAGK
Sbjct: 2309 QDNTRTVRSSAALALGKLSALSTRIDPLVGDLLSSLQASDGGIREAILTALKGVMKHAGK 2368
Query: 1620 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679
+VSS V+ RVY++LKDL+ +DD VR+SAASILGI+SQ +ED +L LL+EL+N+ASS S
Sbjct: 2369 TVSSGVRTRVYTLLKDLIRQEDDQVRISAASILGIISQYLEDDELTGLLEELINMASS-S 2427
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
W ARHGS+L ++ LRH PSA+ +F SIL LK++LKDEKFP+RE STKALGRLLL+
Sbjct: 2428 WHARHGSMLTISSILRHKPSAVCQFAMFSSILGCLKTALKDEKFPIRETSTKALGRLLLY 2487
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
QIQ A +DIL S+VSAL DDSSEVRR+ALSA+K+VAK NPS + H +L GPAL
Sbjct: 2488 QIQRSSATN---LDILTSLVSALQDDSSEVRRKALSAIKAVAKENPSFTVTHASLIGPAL 2544
Query: 1800 AECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSEDS 1859
AECL+DGSTPVRLAAERCA+H FQLT+GSE +Q AQKFITGL+ARRLSK PE SDDSEDS
Sbjct: 2545 AECLRDGSTPVRLAAERCALHCFQLTKGSENVQAAQKFITGLEARRLSKLPEQSDDSEDS 2604
Query: 1860 ENDTASG 1866
E ++ASG
Sbjct: 2605 EAESASG 2611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2999 bits (7775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1470/1852 (79%), Positives = 1673/1852 (90%), Gaps = 17/1852 (0%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
ML SEQGVY+A+ + AK TKQ SNHS K+ A+RE + +G++D
Sbjct: 763 MLLSEQGVYVAQTIGAKYTKQEPS---------------SNHSLKKGLASRETANSGRRD 807
Query: 61 IGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHS 120
K TKKADKGKTAKEEAREL+L EEAS RE V +Q++LSL+L ALGEM +ANPVF HS
Sbjct: 808 TAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSLSLVLHALGEMGLANPVFCHS 867
Query: 121 QLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDS 180
QLP L F+DPLL+SPIV A+E LVKL+RCT PLCNWAL+I+TALRLI +EV
Sbjct: 868 QLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNWALEISTALRLIAIDEVDTSF 927
Query: 181 DLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLH 240
D PSV +A K E L FERIVNGL++SCKSGPLPVD+FTF+FPI+ERILLS KRT LH
Sbjct: 928 DFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTFTFIFPILERILLSSKRTKLH 985
Query: 241 DDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASAL 300
DDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++G ALNELCLGLQ ++VA+AL
Sbjct: 986 DDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASVGPALNELCLGLQADDVANAL 1045
Query: 301 HGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDR 360
+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++WIA+HDPEKSVAE+A+D+W R
Sbjct: 1046 YGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIWIALHDPEKSVAESADDLWAR 1105
Query: 361 YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLG 420
YG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P SIQ SLSTLFSLYIRD G
Sbjct: 1106 YGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPSSIQLSLSTLFSLYIRDATSG 1165
Query: 421 GDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMI 480
D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISRALAD N DVRG+M+NAGIMI
Sbjct: 1166 EDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISRALADPNTDVRGKMINAGIMI 1225
Query: 481 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 540
IDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIFTGALAKHLA+DDPKVH VV+
Sbjct: 1226 IDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIFTGALAKHLARDDPKVHNVVE 1285
Query: 541 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 600
KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLLD+LMKSDKYGERRGAAFGLA
Sbjct: 1286 KLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLLDKLMKSDKYGERRGAAFGLA 1345
Query: 601 GVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660
GVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAFECLCEKLG+LFEPYVI+MLP
Sbjct: 1346 GVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAFECLCEKLGKLFEPYVIKMLP 1405
Query: 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 720
LLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSLLKGLEDKAWRTKQSSVQLLG
Sbjct: 1406 LLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1465
Query: 721 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLL 780
AMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI+SLVPTLL
Sbjct: 1466 AMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLALQQVGSVIKNPEISSLVPTLL 1525
Query: 781 MGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 840
+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHRGLRERS+ETKKKA+QIVGNM
Sbjct: 1526 LALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHRGLRERSSETKKKASQIVGNM 1585
Query: 841 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900
CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGE+NFPDLV WL
Sbjct: 1586 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAVGSLIRGMGEDNFPDLVPWLF 1645
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 960
+ LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR+CSHQ+ASVRDGYLTLFK+L
Sbjct: 1646 ETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIRHCSHQKASVRDGYLTLFKFL 1705
Query: 961 PRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDG 1020
PRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHVLVEH+ATTSLPLLLPAVEDG
Sbjct: 1706 PRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHVLVEHHATTSLPLLLPAVEDG 1765
Query: 1021 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA GRAII++LG DKRN
Sbjct: 1766 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAQGRAIIDILGMDKRN 1825
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1140
EVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIMP+LM+TLISSLAS SSERRQ
Sbjct: 1826 EVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIMPILMSTLISSLASPSSERRQ 1885
Query: 1141 VAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1200
VAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGVCIGL+EVMASAG+SQLLSFM
Sbjct: 1886 VAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGVCIGLNEVMASAGRSQLLSFM 1945
Query: 1201 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260
D+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DEI+PTLL ALEDD+ S TALD
Sbjct: 1946 DQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDEIIPTLLEALEDDEMSTTALD 2005
Query: 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 1320
GLKQI+SVRT AVLPHILPKLVHLPLSA NAHALGALAEVAG G N HLGTILPALLSAM
Sbjct: 2006 GLKQIISVRTAAVLPHILPKLVHLPLSALNAHALGALAEVAGAGFNTHLGTILPALLSAM 2065
Query: 1321 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS 1380
G ++ +VQ LA+EAAE V LVIDEEGVE+L+SELLKGV D+QASIRRSSAYLIGYF+K+S
Sbjct: 2066 GGENKEVQELAQEAAERVVLVIDEEGVETLLSELLKGVSDSQASIRRSSAYLIGYFFKSS 2125
Query: 1381 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 1440
KLYL+DEAPNMISTLIV+LSDSDSTTVA +WEAL+RV+ SVPKEV PSYIK++RDA+ST+
Sbjct: 2126 KLYLIDEAPNMISTLIVMLSDSDSTTVAVSWEALARVIGSVPKEVLPSYIKLVRDAVSTA 2185
Query: 1441 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 1500
RDKERRK+KGG ++IPG CLPK+L+PLLP+FLQGLISGSAELREQAA+GLGELIEVTSEQ
Sbjct: 2186 RDKERRKRKGGYVVIPGLCLPKSLKPLLPVFLQGLISGSAELREQAAIGLGELIEVTSEQ 2245
Query: 1501 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560
+LKEFVIPITGPLIRIIGDRFPWQVKSAIL+TL I+I++GG+ALKPFLPQLQTTF+KCLQ
Sbjct: 2246 ALKEFVIPITGPLIRIIGDRFPWQVKSAILATLIILIQRGGMALKPFLPQLQTTFVKCLQ 2305
Query: 1561 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620
DSTRT+RSSAA+ALGKLSALSTR+DPLVGDL++S Q +D+G+REAIL+A++GV+KHAGKS
Sbjct: 2306 DSTRTIRSSAAVALGKLSALSTRIDPLVGDLMTSFQAADSGVREAILSAMRGVIKHAGKS 2365
Query: 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680
+ AV++R++ +LKDL++H+DD VR+SA S+LG++SQ +E QL+ LLQE+ +L++S +W
Sbjct: 2366 IGPAVRVRIFDLLKDLMHHEDDQVRISATSMLGVLSQYLEAAQLSVLLQEVNDLSASQNW 2425
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
ARHGSVL ++ L+HNPS I S LF S+L+ LKSSLKDEKFPLRE+STKALGRLLL Q
Sbjct: 2426 GARHGSVLCISSLLKHNPSTIMTSSLFSSMLNSLKSSLKDEKFPLRESSTKALGRLLLKQ 2485
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
+ + P+NT VV+D+L+S+VSALHDDSSEVRRRALS+LK+ AK NPSA M ++++ GP LA
Sbjct: 2486 LATDPSNTKVVIDVLSSIVSALHDDSSEVRRRALSSLKAFAKDNPSATMANISVIGPPLA 2545
Query: 1801 ECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEH 1852
ECLKDG+TPVRLAAERCA+H FQLT+G+E +Q AQK+ITGLDARRLSKFPE
Sbjct: 2546 ECLKDGNTPVRLAAERCALHVFQLTKGAENVQAAQKYITGLDARRLSKFPEQ 2597
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2993 bits (7759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1520/1971 (77%), Positives = 1697/1971 (86%), Gaps = 120/1971 (6%)
Query: 1 MLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD 60
MLS+EQG+Y+AE VA KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD
Sbjct: 766 MLSTEQGIYVAESVAFKNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKD 825
Query: 61 IGKSTKKA-------DKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIA 113
GK+TKKA DKGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIA
Sbjct: 826 SGKTTKKAGKFSTSIDKGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIA 885
Query: 114 NPVFAHSQLPSLV------------------KFVDPLLQSPIVGDVAYEALVKLSRCTAM 155
N +FAHS+LPS+V KFV+PLL+SPIV D A+E LV LSRCTA
Sbjct: 886 NSIFAHSRLPSMVLECFLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTAS 945
Query: 156 PLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGP 214
PLC+WALDI+TALRL+VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG
Sbjct: 946 PLCDWALDISTALRLVVTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGA 1005
Query: 215 LPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISV-------LY 267
LPVDSFTFVFPI+ERILL K+T HDDVL+++Y HMD LPLPR+RM+SV LY
Sbjct: 1006 LPVDSFTFVFPIMERILLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLY 1065
Query: 268 HVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTR 327
H L VVP+Y+A+IG ALNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+R
Sbjct: 1066 HALSVVPAYKASIGPALNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSR 1125
Query: 328 SLPENIEVSTSLWIAVHDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGL 372
SLP+N EV+TS+WIA+HDPEK SVAE AEDIWD YG+DFGTD+SG+
Sbjct: 1126 SLPQNTEVATSIWIALHDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGI 1185
Query: 373 FKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 432
FKALSH NYNVRLAAAEALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQ
Sbjct: 1186 FKALSHVNYNVRLAAAEALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQ 1245
Query: 433 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLL 492
G+ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLL
Sbjct: 1246 GVALALHSAADVLRTKDLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLL 1305
Query: 493 FPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 552
FPIFENYLNK A DEE+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+
Sbjct: 1306 FPIFENYLNKTAPDEEQYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSES 1365
Query: 553 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK 612
VQRAVS+CLSPLMQS QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LK
Sbjct: 1366 VQRAVSACLSPLMQSKQDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLK 1425
Query: 613 KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV---------IQMLPLLL 663
KY I L+E LA+RNSAK REGALL FECLCE LG+LFEPYV IQMLPLLL
Sbjct: 1426 KYKIVIILQECLAERNSAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLL 1485
Query: 664 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 723
V+FSDQV AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA
Sbjct: 1486 VSFSDQVAAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1545
Query: 724 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 783
YCAPQQLSQCLPKIVPKLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL
Sbjct: 1546 YCAPQQLSQCLPKIVPKLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGL 1605
Query: 784 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843
+DPN+HTKYSLDILLQTTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSL
Sbjct: 1606 SDPNEHTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSL 1665
Query: 844 VTEPKDMIPYIGLLL-----------PEVK------------------------------ 862
VTEPKDMIPYIGLLL PEV+
Sbjct: 1666 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETL 1725
Query: 863 -----------------KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 905
+VLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKS
Sbjct: 1726 KSDNSNVERSGAAQGLSEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKS 1785
Query: 906 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965
DNSNVERSGAAQGLSEVLAALG +FEH+ PDIIRNCSHQ+ASVRDGYLTLFKYLPRSLG
Sbjct: 1786 DNSNVERSGAAQGLSEVLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLG 1845
Query: 966 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG 1020
VQFQ YL QVLPAILDGLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDG
Sbjct: 1846 VQFQKYLPQVLPAILDGLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDG 1905
Query: 1021 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
I ND+WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRN
Sbjct: 1906 IINDSWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRN 1965
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1140
E+LAALYMVR+DVSLSVRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQ
Sbjct: 1966 EILAALYMVRADVSLSVRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQ 2025
Query: 1141 VAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1200
VAGR+LGELV KLGERVLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM
Sbjct: 2026 VAGRSLGELVGKLGERVLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFM 2085
Query: 1201 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260
+LIPTIRTALCDS VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALD
Sbjct: 2086 TDLIPTIRTALCDSEPAVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALD 2145
Query: 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 1320
GLKQILSVRT+AVLPHILPKLVH PLSAFNAHALGALAEVAGPGL+FHLGT+LP LLSAM
Sbjct: 2146 GLKQILSVRTSAVLPHILPKLVHPPLSAFNAHALGALAEVAGPGLDFHLGTVLPPLLSAM 2205
Query: 1321 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS 1380
D D +VQ+ AK+AAETV LVIDEEGVE L+SELLKGV D+QA+IRRSS+YLIGYF+KNS
Sbjct: 2206 SDVDQEVQTSAKKAAETVVLVIDEEGVEPLISELLKGVSDSQAAIRRSSSYLIGYFFKNS 2265
Query: 1381 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 1440
KLYLVDEAPNMISTLIVLLSD DS+TV AWEALSRV+ SVPKEV PSYIK++RDA+S+S
Sbjct: 2266 KLYLVDEAPNMISTLIVLLSDPDSSTVTVAWEALSRVIMSVPKEVLPSYIKLVRDAVSSS 2325
Query: 1441 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 1500
RDKERRKKKGGP+LIPGFCLPK+LQP+LPIFLQGLISGSAELREQAALGLGELIEV EQ
Sbjct: 2326 RDKERRKKKGGPVLIPGFCLPKSLQPILPIFLQGLISGSAELREQAALGLGELIEVAGEQ 2385
Query: 1501 SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560
SLKE VIPITGPLIRIIGDRFPWQVKSAILSTL+I+IRKGGI+LKPFLPQLQTTF+KCLQ
Sbjct: 2386 SLKEVVIPITGPLIRIIGDRFPWQVKSAILSTLTIMIRKGGISLKPFLPQLQTTFVKCLQ 2445
Query: 1561 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620
D+TRT+RS AA+ALG LS L+TRVDPLV DLLSSLQ SD G+REAIL+ALKGVLKHAGK+
Sbjct: 2446 DNTRTIRSGAAVALGMLSGLNTRVDPLVSDLLSSLQGSDGGVREAILSALKGVLKHAGKN 2505
Query: 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680
VSSAV R+YSVLKDL++HDDD VRV AASILG+++Q +E Q +L+QE+ +LA+SP+W
Sbjct: 2506 VSSAVSSRIYSVLKDLIHHDDDRVRVYAASILGVLTQYLEAVQFTELIQEVTSLANSPNW 2565
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
RHGS+L ++ L NP+ I S LF +++D L+ +LKDEKFPLRE+STKALGRLLL++
Sbjct: 2566 PPRHGSILTISSLLYRNPAPIFSSSLFQTVVDCLRDALKDEKFPLRESSTKALGRLLLYR 2625
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
Q P++T + D+L+ +V++ D+SSEVRRRALSA+K+VAKANPSAIM H + GPALA
Sbjct: 2626 AQEDPSDTVLYKDVLSLLVTSTRDESSEVRRRALSAIKAVAKANPSAIMSHGTVIGPALA 2685
Query: 1801 ECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPE 1851
ECLKD +TPVRLAAERCA+HAFQLT+GSE +Q QK+ITGLDARRLSKFPE
Sbjct: 2686 ECLKDANTPVRLAAERCAIHAFQLTKGSENVQAVQKYITGLDARRLSKFPE 2736
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1866 | ||||||
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.821 | 0.573 | 0.409 | 1.50000000019e-314 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.803 | 0.560 | 0.410 | 6.7000000002e-314 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.803 | 0.561 | 0.408 | 4.69999999998e-313 | |
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.797 | 0.556 | 0.405 | 2.2e-306 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.803 | 0.570 | 0.401 | 3.1e-296 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.948 | 0.663 | 0.363 | 1e-290 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.660 | 0.963 | 0.424 | 1.4e-263 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.751 | 0.525 | 0.373 | 4.1e-252 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.910 | 0.634 | 0.339 | 1.7e-247 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.717 | 0.501 | 0.384 | 9.2e-246 |
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2957 (1046.0 bits), Expect = 1.5e-314, Sum P(2) = 1.5e-314
Identities = 646/1579 (40%), Positives = 942/1579 (59%)
Query: 288 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 343
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 344 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 401
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 402 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 450
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 451 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 510
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 511 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 570
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 571 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 630
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 631 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 690
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 691 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 750
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 751 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 810
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 811 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 930
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 931 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1049 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1109 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1168
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1169 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1228
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1229 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 1288
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PKL P+
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPKLTTPPV-- 2090
Query: 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXX 1346
N L L+ VAG L HLG ILPA++ A+ + + L + V L + D
Sbjct: 2091 -NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTG 2149
Query: 1347 XXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 1406
+ + +R+++A ++ + SK +++S LI L +DS
Sbjct: 2150 HRIIIEDLLEATRSPEVGMRQAAAIILNMYCSRSKADYTSHLRSLVSGLIRLFNDSSPVV 2209
Query: 1407 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQ 1465
+ +W+AL+ + + Q + I+ I ++ R + +PGFCLPK +
Sbjct: 2210 LGESWDALNAITKKLDAGNQLALIEEFHKEIRYIGNECRGEH------VPGFCLPKKGVT 2263
Query: 1466 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 1525
+LP+ +G+++GS E +E+AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W V
Sbjct: 2264 SILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWSV 2323
Query: 1526 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVD 1585
K+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS R VR +VD
Sbjct: 2324 KAALLETLSLLLGKVGIALKPFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVD 2383
Query: 1586 PLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 1644
PL +LL+ ++V D GIR+ +L AL+ V++ AG V +A++ + S+L ++ HD+D+
Sbjct: 2384 PLFTELLNGIRVVEDPGIRDTMLQALRFVIQGAGAKVDAAIRKNIVSLLLGMLGHDEDNT 2443
Query: 1645 RVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISM 1703
R+S+A LG + + W RHG L + + PS +
Sbjct: 2444 RISSAGCLGELCAFLTEEELNTVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCT 2503
Query: 1704 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 1763
+ D + S+ ++ P+ + + +G L+ + I++G + L ++ L
Sbjct: 2504 GKYSNEVQDMVLSNAVADRIPIAVSGIRGMGFLMKYHIETGGGQLPPRLSTL--LIKCLQ 2561
Query: 1764 DDSSEVRRRALSALKSVAKAN--PSAIMVHVAL--FGPALAECLKDGSTPVRLAAERCAV 1819
+ SS++R L A K + AN P + A+ AL + KD +T VR +E+ V
Sbjct: 2562 NPSSDIR---LVAEKMIWWANKEPRPALEPQAIKPILKALLDNTKDKNTVVRAYSEQAIV 2618
Query: 1820 HAFQLTRGSEYIQGAQKFI 1838
+ +L +G E +Q K +
Sbjct: 2619 NLLKLRQGEELLQSLSKIL 2637
|
|
| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2936 (1038.6 bits), Expect = 6.7e-314, Sum P(2) = 6.7e-314
Identities = 634/1545 (41%), Positives = 926/1545 (59%)
Query: 321 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 379
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 380 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 427
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 428 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 487
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 488 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 547
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 548 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 607
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 668 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 784
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 785 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 845 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 904
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 905 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 962
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 963 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1022
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1023 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1082
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1083 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1142
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1143 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1202
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1203 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 1262
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 1263 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 1322
KQ++++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2071 KQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2127
Query: 1323 D-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNS 1380
+ L + V L + D + + +R+++A ++ + S
Sbjct: 2128 KLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRS 2187
Query: 1381 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 1440
K +++S LI L +DS + +W+AL+ + + Q + I+ + I
Sbjct: 2188 KADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRFI 2247
Query: 1441 RDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
++ R + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS
Sbjct: 2248 GNESRGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSA 2301
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
+L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K L
Sbjct: 2302 DALRPSVVNITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKAL 2361
Query: 1560 QDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAG 1618
QDS R VR +VDPL +LL+ ++V D G+R+ +L AL+ V++ AG
Sbjct: 2362 QDSNRGVRLKAADALGKLISIHIKVDPLFMELLNGIRVMEDPGVRDTMLQALRFVIQGAG 2421
Query: 1619 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP 1678
V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 2422 AKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSTVLQQYLLADVSG 2481
Query: 1679 -SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 1737
W RHG L + + P + + + D + S+ + P+ + + +G L+
Sbjct: 2482 IDWMVRHGRSLALSVAVSVAPGRLCVGKYGSDVQDMILSNALTFQIPIAVSGVRGMGFLM 2541
Query: 1738 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFG 1796
H I++G + L + L + SS++R L A K + AN + +
Sbjct: 2542 KHHIETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWANKDPLPALDPQAIK 2596
Query: 1797 P---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838
P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2597 PILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 2641
|
|
| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2939 (1039.6 bits), Expect = 4.7e-313, Sum P(2) = 4.7e-313
Identities = 630/1542 (40%), Positives = 926/1542 (60%)
Query: 321 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 379
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 380 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 427
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 428 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 487
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 488 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 547
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 548 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 607
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 668 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 787
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 847
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 907
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 908 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 965
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 966 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1025
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1026 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1085
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1086 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1145
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1146 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1206 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 1265
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 1266 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-D 1324
+++++ VLP+++PKL P+ N L L+ VAG L HLG ILPA++ A+ +
Sbjct: 2069 MAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLG 2125
Query: 1325 MDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLY 1383
+ L + V L + D + + +R+++A ++ + SK
Sbjct: 2126 TPDEQLEMANCQAVILSVEDDTGHRIIIEYLLEATRSPEVGMRQAAAIILNIYCSRSKAD 2185
Query: 1384 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 1443
+++S LI L +DS + +W+AL+ + + Q + I+ + I ++
Sbjct: 2186 YTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQLALIEELHKEIRLIGNE 2245
Query: 1444 ERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 1502
+ + +PGFCLPK + +LP+ +G+++GS E +E+AA LG +I +TS +L
Sbjct: 2246 SKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEEAAKALGLVIRLTSADAL 2299
Query: 1503 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS 1562
+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALKPFLPQLQTTF K LQDS
Sbjct: 2300 RPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALKPFLPQLQTTFTKALQDS 2359
Query: 1563 TRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQ-VSDAGIREAILTALKGVLKHAGKSV 1621
R VR +VDPL +LL+ ++ + D G+R+ +L AL+ V++ AG V
Sbjct: 2360 NRGVRLKAADALGKLISIHIKVDPLFTELLNGIRAMEDPGVRDTMLQALRFVIQGAGAKV 2419
Query: 1622 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SW 1680
+ ++ + S+L ++ HD+D+ R+S+A LG + + W
Sbjct: 2420 DAVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEELSAVLQQCLLADVSGIDW 2479
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
RHG L + + P + + + + SS ++ P+ + + +G L+ H
Sbjct: 2480 MVRHGRSLALSVAVNVAPGRLCAGRYSSDVQEMILSSATADRIPIAVSGVRGMGFLMRHH 2539
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGP-- 1797
I++G + L V L + SS++R L A K + AN + + P
Sbjct: 2540 IETGGGQLPAKLSSL--FVKCLQNPSSDIR---LVAEKMIWWANKDPLPPLDPQAIKPIL 2594
Query: 1798 -ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838
AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 2595 KALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLSKIL 2636
|
|
| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2880 (1018.9 bits), Expect = 2.2e-306, Sum P(2) = 2.2e-306
Identities = 622/1533 (40%), Positives = 925/1533 (60%)
Query: 339 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 397
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 398 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 446
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 447 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 506
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 507 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 566
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 567 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 627 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 686
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 687 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 804
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 925 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 982
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 983 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1042
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1043 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1102
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1103 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1162
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1222
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1223 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 1282
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PKL
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPKLT 2087
Query: 1283 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLV 1341
P+ N L L+ VAG L HL ILPA++SA+ + + L ++V L
Sbjct: 2088 TPPV---NTRVLAFLSSVAGDALTRHLSVILPAMMSALKEKLGTSEEQLEMANCQSVILS 2144
Query: 1342 I-DXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 1400
+ D + +R+++A ++ + +K N++S LI L +
Sbjct: 2145 VEDDVGQRIITEDLLEATRSPDVGMRQAAAIILNIYCSKTKADYTGHLKNLVSGLIRLFN 2204
Query: 1401 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 1460
D++ + +W+AL+ + + Q + I+ + I ++ + + +PGFC+
Sbjct: 2205 DTNPVVLNESWDALNSITKKLDAGNQLALIEDLHKDIRVVGNEAKGEH------VPGFCI 2258
Query: 1461 PK-ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 1519
PK + +L + +G+++G+ E +E+AA LG +I++TS ++LK V+ ITGPLIRI+GD
Sbjct: 2259 PKKGVTSILLVLREGVLTGNPEQKEEAAKALGLVIKLTSAEALKPSVVSITGPLIRILGD 2318
Query: 1520 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXX 1579
RF W VK A+L TLS+++ K IALKPFLPQLQTTF K LQDS R VR
Sbjct: 2319 RFSWNVKVALLETLSLLLAKVEIALKPFLPQLQTTFTKALQDSNRAVRLKAADALGKLIV 2378
Query: 1580 XXTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 1638
+VDPL +LL+ ++ SD + IR+ +L AL+ V + AG V + ++ + +VL ++
Sbjct: 2379 IHVKVDPLFTELLNGIRSSDDSAIRDTMLQALRFVTRGAGAKVDATIRKNISTVLLGMLG 2438
Query: 1639 HDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHN 1697
HD+D R+++A L + + W RHG L + +
Sbjct: 2439 HDEDATRMASAGCLAELCAFLSEEELNTVLHQHLLADISGIDWMVRHGRSLALSVAVNVA 2498
Query: 1698 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 1757
P + + S+L+ + S+ ++ P+ + + +G L+ + ++ G N + L
Sbjct: 2499 PYRLCSPKYYNSVLEMILSNATADRIPIAVSGIRGMGFLMKYHMEEG-GNLPPKLSNL-- 2555
Query: 1758 VVSALHDDSSEVRRRALSALKSVAKANPSAI-MVHVALFGP---ALAECLKDGSTPVRLA 1813
+ L + SS+++ L A K + AN + + + P AL + KD +T VR
Sbjct: 2556 FIKCLQNSSSDIK---LVAEKMIWWANKNHLPALDPQTIKPILKALLDNTKDKNTSVRAY 2612
Query: 1814 AERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 1846
+++ V+ ++ G + ++ K LDA L
Sbjct: 2613 SDQAIVNLLKMRVGEQVLESVSKI---LDAASL 2642
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2827 (1000.2 bits), Expect = 3.1e-296, Sum P(2) = 3.1e-296
Identities = 617/1538 (40%), Positives = 911/1538 (59%)
Query: 310 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 365
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 366 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 421
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 422 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 473
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 474 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 533
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 534 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 593
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 594 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 654 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 713
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 714 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 774 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 833
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 894 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 951
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 952 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1011
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1012 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1071
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1072 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1131
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1132 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1191
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1192 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 1251
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 1252 DQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL 1309
++ LDGL+Q++S+++ VLP+++P+L P+ N AL L VAG L +L
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQLTSPPV---NTKALSILVSVAGEALIKYL 2069
Query: 1310 GTILPALLSAMGDD-DMDVQSLAKEAAETVTL-VIDXXXXXXXXXXXXKGVGDNQASIRR 1367
IL +LL A+ D + E +TV L V D + R+
Sbjct: 2070 PKILSSLLEALSDAYGYPNEPQENEYCQTVILSVTDETGIRTIMDTLLISANSSDLCTRK 2129
Query: 1368 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 1427
S+A L+ F +S + P ++ L+ LL +SD + +WEAL+ V+ + Q
Sbjct: 2130 SAASLLSAFCIHSPGNYYEYIPQLLRCLLKLLVESDKDILQKSWEALNAVIKGMNAAQQI 2189
Query: 1428 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAA 1487
++ +R A+ + + + +PGFCLPK + PLLP+F + +++G E +E AA
Sbjct: 2190 CHVSDVRQAVRFAASELEGTE------LPGFCLPKGITPLLPVFREAILNGLPEEKENAA 2243
Query: 1488 LGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 1547
GLGE+I +T+ +SL+ V+ ITGPLIRI+GDRF VK+A+L TLSI++ K G+ LK F
Sbjct: 2244 QGLGEVIFLTNAKSLQPSVVHITGPLIRILGDRFNAAVKAAVLETLSILLHKVGVMLKQF 2303
Query: 1548 LPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSD-AGIREAI 1606
LPQLQTTF+K L D R VR +R +PL ++ + ++ SD + +RE +
Sbjct: 2304 LPQLQTTFLKALHDQNRNVRMKAGKALSELVAIHSRAEPLFNEIHNGIKNSDDSSVRETM 2363
Query: 1607 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXX 1666
L AL+ ++ +G +S +K ++Y L ++ H +D R + LG + + +
Sbjct: 2364 LHALRSIVSRSGDKMSEPIKKQIYVTLLSMIGHHEDATRSAVGGCLGAILKYIASGHVYD 2423
Query: 1667 XXXXXXXXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLR 1726
+HG +V L+ P+ + + L I + ++ EK P+
Sbjct: 2424 LFNNIILTNNTDDLIVKHGHTIVLFVALKECPTEVLVLDLPEKITSYVLINILSEKVPIA 2483
Query: 1727 EASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 1786
+ +A LL + + + +V L+ ++ +D ++ ++ + L AN S
Sbjct: 2484 SNAVRAATYLLDYYLVNQNEPPIKIVMALSRAMNHSSNDVKQLVAQSCTYLSKNLAANQS 2543
Query: 1787 AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 1824
+I V L P L K+ + V+ +E + +L
Sbjct: 2544 SIDVLKYLV-PMLVNGTKEKNGYVKSNSELALISILRL 2580
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2792 (987.9 bits), Expect = 1.0e-290, P = 1.0e-290
Identities = 663/1824 (36%), Positives = 1008/1824 (55%)
Query: 30 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 88
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 89 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 146
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 147 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 205
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 206 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 265
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 266 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 325
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 326 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 383
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 384 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 440 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 498
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 499 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 558
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 559 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 617
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 677
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 678 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 798 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 918 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1038 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1093 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1152
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1153 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1212
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1213 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 1269
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 1270 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD-MDVQ 1328
++ VLP ++PKL+ P+S N AL +LA AG GL HL TI+P+L+ + + + +
Sbjct: 2077 SSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNA 2136
Query: 1329 SLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 1388
KEAA ++ ID + +IR + LIG FY + + V E
Sbjct: 2137 KEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFYNGNTM--VTEY 2194
Query: 1389 PN-MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 1447
P ++ +L+ L +D D+ AA AL + S+ K+ +Y+ V + I ++ +
Sbjct: 2195 PEELLLSLLSLFNDPDALVQQAANNALGFITKSLKKD-NLTYLPVFQKGIQLLVNETYEE 2253
Query: 1448 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI 1507
IPGFCLPK L +LP+ + GL+ G+++ REQA L +I TS +LK FV+
Sbjct: 2254 VS----TIPGFCLPKGLASVLPVLISGLMYGTSDQREQATNTLRTVINHTSADALKPFVM 2309
Query: 1508 PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVR 1567
ITGPLI +IGD+FPWQVKSAIL TLS++I K ++K FL QLQ TFIKCL DS + VR
Sbjct: 2310 QITGPLILVIGDKFPWQVKSAILQTLSLLISKSPASMKIFLHQLQPTFIKCLSDSHKNVR 2369
Query: 1568 XXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 1627
+ VD LV L++ + +D+ +E+ L AL+ + + K V A
Sbjct: 2370 TNAASALGLLMTLSSSVDQLVNSLITGISTADSISQESKLRALQSIFEKKPK-VEQATLD 2428
Query: 1628 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXXXXXXPSWAARHGSV 1687
+ + + D +Y D +R A +G S+C S +R+G
Sbjct: 2429 KAIATIVDFLYQPSDDLRSMVAQTIGASSKCFTSLTELNQFIKTNLISPSQSVLSRYGKS 2488
Query: 1688 LVFATFLRHNPSAI--SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 1745
L + + + S SP +I+ +++ +DEK P+RE+S +L+ + P
Sbjct: 2489 LALGEIFKASGKNLIDSQSPNMPTIIKIIQTDCRDEKGPIRESSAYLAEAILV----ASP 2544
Query: 1746 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLK 1804
T D++ S+ + D SS V AL+ +K K+N ++ + P + +
Sbjct: 2545 L--TYAKDLVPSICHLIGDQSSSVSISALNVIKRFCKSNQQLSRQYLRDIVVPTMNRLKE 2602
Query: 1805 DGSTPVRLAAERCAVHAFQLTRGS 1828
+ P++LAAER VH+ Q+ + S
Sbjct: 2603 RTNLPLKLAAERTLVHSLQIFKES 2626
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2536 (897.8 bits), Expect = 1.4e-263, P = 1.4e-263
Identities = 535/1259 (42%), Positives = 775/1259 (61%)
Query: 591 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 650
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 651 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 710
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 830
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 948
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1068
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1069 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1128
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1129 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1188
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1189 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 1248
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 1249 LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFH 1308
L+D++ S+ ALDGLKQ++++++ VLP+++PKL P+ N L L+ VAG L H
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRH 717
Query: 1309 LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVI-DXXXXXXXXXXXXKGVGDNQASIR 1366
LG ILPA++ A+ + + L + V L + D + + +R
Sbjct: 718 LGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMR 777
Query: 1367 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 1426
+++A ++ + SK +++S LI L +DS + +W+AL+ + + Q
Sbjct: 778 QAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAITKKLDAGNQ 837
Query: 1427 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK-ALQPLLPIFLQGLISGSAELREQ 1485
+ I+ + I ++ + + +PGFCLPK + +LP+ +G+++GS E +E+
Sbjct: 838 LALIEELHKEIRLIGNESKGEH------VPGFCLPKKGVTSILPVLREGVLTGSPEQKEE 891
Query: 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 1545
AA LG +I +TS +L+ V+ ITGPLIRI+GDRF W VK+A+L TLS+++ K GIALK
Sbjct: 892 AAKALGLVIRLTSADALRPSVVSITGPLIRILGDRFSWNVKAALLETLSLLLAKVGIALK 951
Query: 1546 PFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQV-SDAGIRE 1604
PFLPQLQTTF K LQDS R VR +VDPL +LL+ ++V D G+R+
Sbjct: 952 PFLPQLQTTFTKALQDSNRGVRLKAADALGKLISIHIKVDPLFTELLNGIRVMEDPGVRD 1011
Query: 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXX 1664
+L AL+ V++ AG V ++ + S+L ++ HD+D+ R+S+A LG + +
Sbjct: 1012 TMLQALRFVIQGAGAKVDVVIRKNIVSLLLSMLGHDEDNTRISSAGCLGELCAFLTEEEL 1071
Query: 1665 XXXXXXXXXXXXXP-SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF 1723
W RHG L + + PS + + D + S+ +
Sbjct: 1072 SAVLQQCLLADVSGIDWMVRHGRSLALSVAVNVAPSRLCTGKYSSEVQDMILSNAFALQI 1131
Query: 1724 PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKA 1783
P+ + + +G L+ + +++G + L + L + SS++R L A K + A
Sbjct: 1132 PIAVSGVRGMGFLMKYHVETGGGQLPAKLSSL--FIKCLQNPSSDIR---LVAEKMIWWA 1186
Query: 1784 NPSAI-MVHVALFGP---ALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838
N + + P AL + KD +T VR +++ V+ ++ +G E Q K +
Sbjct: 1187 NKDPLPALDPQAIKPILKALLDNTKDKNTVVRAYSDQAIVNLLKMRQGEEVFQSLCKIL 1245
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 2383 (843.9 bits), Expect = 4.1e-252, Sum P(2) = 4.1e-252
Identities = 537/1439 (37%), Positives = 853/1439 (59%)
Query: 425 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 477
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 478 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 537
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 597
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 598 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 658 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 717
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 718 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 778 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 837
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 838 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 897
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 898 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 957
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 958 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1017
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1018 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1078 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1137
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1138 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1197
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1198 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 1257
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 1258 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 1317
AL L++I+S R++ + P ++P L+ P+SAFNA AL +LA+VAG LN L +IL AL+
Sbjct: 2042 ALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALM 2101
Query: 1318 -SAMGDDDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRR--SSAYLIG 1374
S++ D+ +L A + V L + +++ +R ++ +++
Sbjct: 2102 ESSLASTGDDLVAL-NGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHML- 2159
Query: 1375 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 1434
F++N KL + + I L D V AA A + +V+++ K+ S + +
Sbjct: 2160 VFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDSLVSI-- 2217
Query: 1435 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 1494
A + RD +G + +P F + + + +LPIFL GL+ G+ + REQ+ALG+ +++
Sbjct: 2218 -AYHSLRDVG---SQG--VNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGIADIV 2271
Query: 1495 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554
T L+ FV ITGPLIRIIG+RFP +VK AIL TL+II+ K L+PFLPQLQ T
Sbjct: 2272 LKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQRT 2331
Query: 1555 FIKCLQD-STRTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 1613
F KCL D S+ +R TR+ P++ +L+S + DAG+R+A+L AL V
Sbjct: 2332 FAKCLGDPSSEVIRSRAATALGTLITLQTRLAPIITELVSGARTPDAGVRKAMLNALFAV 2391
Query: 1614 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXXX 1673
+ +G++++ A + +L ++ +H+ V A + G + +
Sbjct: 2392 VSKSGQNMNEASAEAIEQLLDEISAESSEHM-VICAKLYGALFSHLPDAQAKQLLESKVL 2450
Query: 1674 XXXXPSWAARHGSVLVFATFLRHNPSAI---SMSPLFLSILDRLKSSLKDEKFPLREAST 1730
S SVL+ ++ I +S + SI+ +SL+ E + E
Sbjct: 2451 SLEIQS----EFSVLILNAAVKFGSQKIIELKLSDIVCSIIST--ASLQKE-VTIAENGI 2503
Query: 1731 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 1790
ALG+ LL I N +V+ L + A S + RR AL ++ V+K N S I
Sbjct: 2504 LALGKALLADIPQSFGNAKNLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKP 2563
Query: 1791 HVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKF 1849
H+++ PA+ C++ PV+LAAE + FQL + K+I L+ R F
Sbjct: 2564 HISILAPAIFGCVRAIVIPVKLAAEAAFLALFQLVEDDSVLN---KYIETLEGPRARSF 2619
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 1.7e-247, P = 1.7e-247
Identities = 602/1774 (33%), Positives = 944/1774 (53%)
Query: 88 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 144
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 145 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 204
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 205 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 257
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 258 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 311
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 312 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 370
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 371 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 420
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 421 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 478
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 479 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 538
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 539 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 598
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 599 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 658
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 659 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 718
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 719 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 778
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 779 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 838
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 839 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 898
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 899 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 958
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 959 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1018
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1019 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1078
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1079 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1138
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1139 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1197
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1198 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 1257
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 1258 ALDGLKQILS--VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 1315
AL L +L+ R+ +LP+++P L+ P+SAFNA AL +L+ VAG +N L I+ +
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIPTLIAPPISAFNAKALASLSRVAGAAMNRRLPNIVNS 2097
Query: 1316 LLSAMGD-DDMDVQSLAKEAAETVTLVIDXXXXXXXXXXXXKGVGDNQASIRRSSA-YLI 1373
L+ + + D ++ + TV ID + ++ +R++ +
Sbjct: 2098 LMDNLVNCKDDSLREDLDASFHTVISSIDEYDGLNTVMNVLLQLTKHEDHRKRAATGKQL 2157
Query: 1374 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 1433
F+ + + ++I +L++ DSD V +AW ALS + KE + +
Sbjct: 2158 ARFFAATDVDYSRYNQDIIRSLLISFDDSDMEVVKSAWSALSEFTKKLRKEEMEALV--- 2214
Query: 1434 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 1493
+ST + + G + GF LPK + +LPIFLQGL++G+ + + Q+AL + ++
Sbjct: 2215 ---VSTRQTLLQVGVAGNNL--KGFELPKGVSAILPIFLQGLMNGTPDQKIQSALAISDI 2269
Query: 1494 IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 1553
+ TSE SLK FV+ ITGPLIR++ +R +VKSAIL TL+ ++ K ALKPFLPQLQ
Sbjct: 2270 VARTSEASLKPFVVQITGPLIRVVSERST-EVKSAILLTLNNLLEKMPTALKPFLPQLQR 2328
Query: 1554 TFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPLVGDLLSSLQVSDAGIREAILTALKG 1612
TF K L D+T +R RVDPL+ +L++ + +D G+R A+L AL
Sbjct: 2329 TFAKSLADTTSEQLRSRAAKALGTLIKYTPRVDPLIAELVTGSKTTDPGVRTAMLKALFE 2388
Query: 1613 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMXXXXXXXXXXXXX 1672
V+ AG ++ + V ++ DD + V+ A +LG + + +
Sbjct: 2389 VISKAGANMGEPSRAAVLGLIDMETDEKDDAMTVTNAKLLGALVKNVSGDAAHNLIKSRV 2448
Query: 1673 XXXXXPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 1732
P+ + SVL L P+AI P + + L + + + + S A
Sbjct: 2449 LTPT-PTTS----SVLGLNAVLLDAPAAIMEGPFAEELPELLVQGISSKIAMIADNSILA 2503
Query: 1733 LGRLLLHQIQSGP-ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791
G+ LL++ QS P +T V + LA+ V + ++ RR +L +++V++ N H
Sbjct: 2504 AGKYLLNE-QSKPFEHTKAVFEALANTVGP--GNPTDSRRLSLVVVRTVSRVNMDLARPH 2560
Query: 1792 VA-LFGPALAECLKDGSTPVRLAAERCAVHAFQL 1824
+ L GP A ++D PV+LAAE V F +
Sbjct: 2561 LPQLAGPVFAS-VRDPVIPVKLAAEAAFVSLFNV 2593
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 2289 (810.8 bits), Expect = 9.2e-246, Sum P(2) = 9.2e-246
Identities = 533/1388 (38%), Positives = 819/1388 (59%)
Query: 291 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 350
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 351 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 408
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 409 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 456
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 457 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 515
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 516 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 575
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 635
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 636 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 695
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 756 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 875
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 876 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 935
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 995
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 996 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1055
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1056 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1115
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1174
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1175 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1234
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILPKLVHLPLSAFNAH 1292
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P L+ P+S FNA
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIPTLLTSPISTFNAK 2070
Query: 1293 ALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDXXXXXXX 1350
AL +LAEVAG + L TIL L+ + DD + L +A T+ + +D
Sbjct: 2071 ALASLAEVAGSAMARRLPTILNTLMDNIITCKDDEQRKEL-DDAFSTILVSVDEFDGLNV 2129
Query: 1351 XXXXXKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 1409
+ + RR+ +A + F+ ++++ ++I L++ D D V A
Sbjct: 2130 MMSVMLALIKHDDERRRTRAADHLRRFFSDAEIDFSRYHQDLIRVLLISFDDPDKDVVKA 2189
Query: 1410 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLL 1468
AW ALS + + + KE ++V+ ++ T ++ K G P +PGF LPK + +L
Sbjct: 2190 AWGALSGLTSRLRKEE----MEVL--SVPT---RQILKGVGVPGADLPGFSLPKGITAIL 2240
Query: 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 1528
PIFLQGL++GS E R QAAL +G+LI+ T+ SLK FV ITGPLIR++ +R +K A
Sbjct: 2241 PIFLQGLLNGSVEQRTQAALAIGDLIDRTAADSLKLFVTQITGPLIRVVSERSV-DLKCA 2299
Query: 1529 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRXXXXXXXXXXXXXXTRVDPL 1587
I TL+ +++K +A+KPFLPQLQ TF + L D T T+R RVDPL
Sbjct: 2300 IFFTLNKLLQKIPLAVKPFLPQLQRTFARGLADQTSETLRNRAAKGLGILITLTPRVDPL 2359
Query: 1588 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 1647
+ +L++ + +D G+R A++ AL+ V+ AG ++S A K + +++ D D V ++
Sbjct: 2360 IAELITGTKTADVGVRNAMMKALQEVVGKAGANMSEASKNSLLALIDDDASDQTDAVAIT 2419
Query: 1648 AASILGIM 1655
A +LG +
Sbjct: 2420 NAKLLGAL 2427
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1866 | |||
| COG5181 | 975 | COG5181, HSH155, U2 snRNP spliceosome subunit [RNA | 1e-08 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 2e-05 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 9e-05 | |
| COG1413 | 335 | COG1413, COG1413, FOG: HEAT repeat [Energy product | 1e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 |
| >gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-08
Identities = 128/767 (16%), Positives = 263/767 (34%), Gaps = 124/767 (16%)
Query: 1116 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1172
+++P+LM S ER V + L+ L + +P I+ ++ L D
Sbjct: 205 FNKVLPMLM-----SRELEDQERHLVVK-LIDRLLYGLDDLKVPYVHKILVVVGPLLIDE 258
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
RR C+G E++ + L F + ++R + VR G A + +
Sbjct: 259 DLKRR---CMG-REIILNLVYRCGLGFS---VSSMRPDITSKDEYVRNVTGRAVGVVADA 311
Query: 1233 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLV---H 1283
G++ + + L + + + T + +QI + + L H + KL+
Sbjct: 312 LGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRS 371
Query: 1284 LPLSAFNAHALGALAEVAGP---------------GLNFHLGTILPALLSAMGD--DDMD 1326
+ A+AL LAE+ GP G + H G L + L AMG M
Sbjct: 372 RFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMS 431
Query: 1327 VQSLAKEAAETVTLVI------DEEG-------------VESLVSELL-----------K 1356
+ + E + +V DEE V + L
Sbjct: 432 PEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF 491
Query: 1357 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
A RRS ++ L + P + ++ SD +SR
Sbjct: 492 WR-RRSAGDRRSYKQVV---LTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSR 547
Query: 1417 VVASVPK-EVQPSYIKVIRDAI------STSRDKERRKKKGGPILIPGFCLPKALQPLLP 1469
+ + + + + + D+I + ++ F L ++
Sbjct: 548 IFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVS 607
Query: 1470 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 1529
L+ L S ++R +AA +G L +V + + + L +G+ +P + S +
Sbjct: 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSIL 667
Query: 1530 LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDP-- 1586
+ SI +++P + + + L++ + V ++ +G + S +
Sbjct: 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE 727
Query: 1587 ---LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
+ +L+ SL+ + IR + + G V +L + + +
Sbjct: 728 WMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-------DVLDILLNNLKVQERQ 780
Query: 1644 VRVSAASILGIMSQ-CMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR--HNPS- 1699
RV + + I+++ C +L L++ +P ++G + S
Sbjct: 781 QRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836
Query: 1700 --AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV---VDI 1754
S++PL L+ +L D R+ + ++ + T + +
Sbjct: 837 DYVYSITPL-------LEDALTD-----RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHL 884
Query: 1755 LASVVSALHDDSSEVRRRALSALKSVAKA-NPSAIMVHV--ALFGPA 1798
L + + + S V + ++S A A+M +V LF P+
Sbjct: 885 LNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPS 931
|
Length = 975 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1523 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 1577
W+V+ A L + G L+P +P+L + L+D VR +AA ALG++
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-05
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 1307 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-ASI 1365
HL I+ L + DDD+ + A + + ++DE V+ +V ELLK V +
Sbjct: 301 QHLDLIIFCLKT---DDDISI---RLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEF 354
Query: 1366 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
+ IG + +A I L+ LLS + S V E + ++ P
Sbjct: 355 KIKLVKAIGRLAEKF----PTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYP 407
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
| >gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 62/279 (22%), Positives = 102/279 (36%), Gaps = 50/279 (17%)
Query: 1513 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 1572
L++++ D V+ + L G + + +P L + L D VR +AA
Sbjct: 48 LLKLLEDE-DLLVRLSAAVAL------GELGSEEAVPLL----RELLSDEDPRVRDAAAD 96
Query: 1573 ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV-LKHAGKSVSSAVKIRVYS 1631
ALG+L V PLV L + + G+R A AL + + A + A++
Sbjct: 97 ALGEL-GDPEAVPPLVELLENDE---NEGVRAAAARALGKLGDERALDPLLEALQDEDSG 152
Query: 1632 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS--PSWAARHGSVLV 1689
+ VR +AA LG + D + LL ELL + AA S L
Sbjct: 153 SAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIELLEDEDADVRRAAA---SALG 205
Query: 1690 FATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT 1749
D L +L DE +R+A+ ALG + +
Sbjct: 206 QLGSENVE------------AADLLVKALSDESLEVRKAALLALGEIGDEE--------- 244
Query: 1750 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 1788
+ ++ AL D+ + A +AL ++ A +
Sbjct: 245 ----AVDALAKALEDEDVILALLAAAALGALDLAEAALP 279
|
Length = 335 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 1710 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSS 1767
L L S L ++ + AL L N VV+ L ++V L +
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAG----NNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 1768 EVRRRALSALKSVAKANPS-AIMVHVALFGPALAECLKDGSTPVRLAAERC 1817
EV + AL AL+++A ++V A P L L + ++ A
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGA 114
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.97 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.94 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.93 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.92 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.9 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.9 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.89 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.87 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.87 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.84 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.57 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.56 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.52 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.48 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.42 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.41 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.39 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.38 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.35 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.33 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.29 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.22 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.19 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 99.16 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.05 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.04 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.03 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.02 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.92 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.91 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.89 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.84 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.82 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.77 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.76 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.76 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.75 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.75 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.74 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.71 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.67 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 98.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.62 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.62 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.6 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.58 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.56 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.56 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.54 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.54 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 98.51 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.47 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.46 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.46 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.42 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.41 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.4 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.39 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.39 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.38 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.37 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.37 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.36 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.33 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.32 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.31 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.29 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.26 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.18 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 98.17 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 98.13 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 98.02 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 98.01 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.99 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.98 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.98 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.97 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.93 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.93 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.92 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.89 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.82 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.74 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 97.73 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.73 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.71 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.68 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.68 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 97.67 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.67 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.53 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.53 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.46 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 97.45 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.45 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.38 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.38 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.37 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.34 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.29 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 97.29 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.27 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 97.27 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.23 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.2 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.2 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 97.18 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.13 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 97.08 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 97.06 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 97.04 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 97.01 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.0 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.99 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.95 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 96.93 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.89 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.79 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 96.55 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 96.5 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.49 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.48 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.46 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.43 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 96.41 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.41 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.34 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.32 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 96.23 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.19 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.17 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 96.15 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.14 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 96.06 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 96.02 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.96 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.92 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.88 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 95.84 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 95.78 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 95.72 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.68 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.6 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 95.53 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.52 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.47 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.45 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.42 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.4 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 95.37 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 95.14 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 95.09 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.6 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.44 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 94.41 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.29 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 94.16 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.14 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 94.07 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 94.07 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.06 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.06 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 93.74 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 93.72 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 93.62 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 93.59 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 93.47 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 93.33 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 93.28 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 92.98 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 92.52 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 92.44 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 91.94 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 91.88 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 91.82 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.73 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 91.7 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 91.53 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 91.43 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 91.31 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 91.29 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 91.19 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 91.11 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.82 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 90.71 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 90.66 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 90.04 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 89.84 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 89.81 | |
| KOG1823 | 1364 | consensus DRIM (Down-regulated in metastasis)-like | 89.74 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 89.7 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 89.66 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 89.58 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 89.42 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 89.16 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 89.05 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 89.0 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 88.89 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 88.72 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 88.47 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 87.96 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 87.88 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 86.96 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 86.66 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 86.65 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 86.61 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 86.33 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 84.94 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 84.93 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 84.75 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 84.6 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 84.51 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 84.39 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 84.39 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 84.32 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 83.73 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 82.81 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 82.44 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 80.91 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 80.08 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=517.33 Aligned_cols=561 Identities=50% Similarity=0.755 Sum_probs=526.6
Q ss_pred HHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHH
Q 000201 438 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 517 (1866)
Q Consensus 438 l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~a 517 (1866)
++..+..+...+....+.|+++.+ +|+.+.||..|++++..+++.||.+....++|.||+.|++.. ++.+|++.
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch-----hHHHhhhh
Confidence 444445555444445588888767 999999999999999999999999999999999999998733 47899999
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHH
Q 000201 518 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 597 (1866)
Q Consensus 518 v~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~ 597 (1866)
+...|.++.|+...|++...++.++++.+.+|++.+|.+++.|+++++..........+..++..+++..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887766666666666777777888899999999
Q ss_pred HHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHH
Q 000201 598 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 677 (1866)
Q Consensus 598 ~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a 677 (1866)
++++++++.|...+++..++..+.+++.++++..+|+++++++...+..+|..|+||+..++|.++.+++|....||+++
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHH
Q 000201 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 757 (1866)
Q Consensus 678 ~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~ 757 (1866)
.++.+.++..+++++++.++|.++..+.+..||++.++++.+|.|++++|++++.+++.++|.+.+.+.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000201 758 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 837 (1866)
Q Consensus 758 ~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l 837 (1866)
.||..++..+.|++|+.++|.|++++.||..++.+|++.|..++|++++++|+++.++|++.+++.+++...++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHH
Q 000201 838 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917 (1866)
Q Consensus 838 ~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~ 917 (1866)
+|++..+.+++++.||++.++|++...+.|+.|++|..+.++|+.+.+.+|..+|++..|++.+.+.++.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHH
Q 000201 918 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 995 (1866)
Q Consensus 918 ~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~ 995 (1866)
.+++++...|.++..++++.+....... ++.+|++.+++|..++..+|..|++|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887665 67799999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 000201 996 GAGHVLVEH 1004 (1866)
Q Consensus 996 ~al~~i~~~ 1004 (1866)
++...+..+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887766543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=467.74 Aligned_cols=1046 Identities=17% Similarity=0.194 Sum_probs=747.4
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
.+++.|.+++-..|++|+.-|..-.......+ ....+.++..++++|.|.+++|++.|++|++.+++.++...++.++.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 57788888888889988877665444433322 23456889999999999999999999999999999998888899999
Q ss_pred HHHHhhCCCChhHHH----HHHHHHh-cc-cc-ccCCcchhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhhcCCCc
Q 000201 778 TLLMGLTDPNDHTKY----SLDILLQ-TT-FV-NTVDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr~----al~~L~~-~~-~~-~~~~~~~l~~l~p~L~~~l~--d~~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
.|+..+-...+..|. ++.+.+. .. ++ ..........+.|.+..++. +....++..++++++.+...+++
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~-- 166 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT-- 166 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--
Confidence 998886655555552 4444433 11 11 12333445566666666553 34556899999999988887665
Q ss_pred chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 849 ~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
-+.++...++..+...+..+...||+.++.+||.++...+.+.+.+++..|...|.+.......+..+++|+.++++.|.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 45567788888888889999999999999999999999998889999999999998877666677889999999999998
Q ss_pred h---HHHHHHHHHHHHh---ccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CCCh-------------
Q 000201 929 V---YFEHILPDIIRNC---SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENE------------- 988 (1866)
Q Consensus 929 ~---~l~~ll~~l~~~l---~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~------------- 988 (1866)
. +++.++|.+.+.+ +..+.++|+.++++++.+...++.++.||.+.++..++++++ |+|.
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 6 6788999999988 567899999999999999999999999999999999999886 2211
Q ss_pred --------------------HHHHHHHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcC
Q 000201 989 --------------------SVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1045 (1866)
Q Consensus 989 --------------------~VR~~a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~ 1045 (1866)
.||.+|++++..++..-.+- ....+-|.+...+++....|+...+...-.++.+.+.
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 14444444444333211100 0111223333333333333444444444333333222
Q ss_pred CcccccccCCCCCCCc---chHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH
Q 000201 1046 TSGKALLEGGSDDEGA---STEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1122 (1866)
Q Consensus 1046 ~~~~~~~~~~~ed~~~---~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~ 1122 (1866)
... ...|.|.. +.......+.+ ....++..+-..+.+.+...|+.++..|..++...|..+.++++.
T Consensus 407 ~~~-----~~~d~d~~e~~g~~s~~~~L~~-----~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~s 476 (1233)
T KOG1824|consen 407 VIE-----VLADNDAMEQGGTPSDLSMLSD-----QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPS 476 (1233)
T ss_pred Ccc-----cccCchhhhccCCccchHHHHh-----hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccc
Confidence 111 00011110 00000011111 112344444444556666789999999999999999999999999
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhch---
Q 000201 1123 LMNTLISSLASS--SSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--- 1193 (1866)
Q Consensus 1123 l~~~L~~~l~~~--~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~--- 1193 (1866)
+++.+...+.+. ....+..+..++.......+++ ..+.+.|.+.....++.+.+-.+++..+.+++....+
T Consensus 477 lvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~ 556 (1233)
T KOG1824|consen 477 LVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQP 556 (1233)
T ss_pred cchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCC
Confidence 999999999865 4567888888887777666664 4567778888888899999988888888887766543
Q ss_pred ---hhHHhhHhhHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHH
Q 000201 1194 ---SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQI 1265 (1866)
Q Consensus 1194 ---~~l~~~l~~ll~~l~~~L--~d~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~i 1265 (1866)
....+|..+++....+.+ .|.|.+||+.|..++|.+...+|.. ....++|.+++.|.++.++-.+..++..+
T Consensus 557 ~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 557 PSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLI 636 (1233)
T ss_pred CccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 234678888888877765 4789999999999999998888753 23445777777777766554444444333
Q ss_pred hhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch-
Q 000201 1266 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE- 1344 (1866)
Q Consensus 1266 l~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~- 1344 (1866)
... ...-.+.+.+..+++.+..++.......|.....++..++.+++.
T Consensus 637 a~S-------------------------------~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~ 685 (1233)
T KOG1824|consen 637 AMS-------------------------------PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS 685 (1233)
T ss_pred Hhc-------------------------------cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 211 112235677888999999999888888999999999999887654
Q ss_pred ---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHH----H
Q 000201 1345 ---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR----V 1417 (1866)
Q Consensus 1345 ---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~----l 1417 (1866)
..+..++.++...+...+..+-+.|+.++..++...+.........+++.++.++..+- +...|..++-. +
T Consensus 686 ~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 686 IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQAL 763 (1233)
T ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHH
Confidence 34777888888888888889999999999999888777777778889999999887653 33333333322 2
Q ss_pred HhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccC-CHHHHHHHHHHHHHHHhh
Q 000201 1418 VASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEV 1496 (1866)
Q Consensus 1418 ~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~-~~~~r~~a~~~L~~l~~~ 1496 (1866)
+..... .++ +...+ ..+. .+ +.+ ....+ ........+.|.+.++..
T Consensus 764 V~t~~~-~l~-y~~l~-s~lt------------~P--V~~----------------~~~~~l~kqa~~siA~cvA~Lt~~ 810 (1233)
T KOG1824|consen 764 VITKEP-DLD-YISLL-SLLT------------AP--VYE----------------QVTDGLHKQAYYSIAKCVAALTCA 810 (1233)
T ss_pred HhcCCC-Ccc-HHHHH-HHHc------------CC--ccc----------------ccccchhHHHHHHHHHHHHHHHHh
Confidence 222111 111 11111 1111 00 000 00001 111223456666777766
Q ss_pred cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000201 1497 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576 (1866)
Q Consensus 1497 ~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~ 1576 (1866)
++ +.-++.+..+.. .....+.+..+|..++.++|++.+..+.... +.+..+++++++.++++|+.+|+.|||.
T Consensus 811 ~~-~~s~s~a~kl~~---~~~s~~s~~~ikvfa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGs 883 (1233)
T KOG1824|consen 811 CP-QKSKSLATKLIQ---DLQSPKSSDSIKVFALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGS 883 (1233)
T ss_pred cc-ccchhHHHHHHH---HHhCCCCchhHHHHHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhh
Confidence 63 333333333322 2233445778999999999999887765433 4555689999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1577 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1577 L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
+.. +++..|+|.++..+.+ ++.-++..++++++++.........++.+.||..|..++.+.+|++|+..++|+|.|+
T Consensus 884 l~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 884 LAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred hhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 976 7889999999999875 4677999999999999988776667999999999999999999999999999999999
Q ss_pred hhcChhHH-------------------------------------HHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCC
Q 000201 1657 QCMEDGQL-------------------------------------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 1699 (1866)
Q Consensus 1657 ~~~~~~~~-------------------------------------~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~ 1699 (1866)
...|+.-+ .+.+..++..+.+++..+|+.+..+++++.++-|.
T Consensus 961 l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 961 LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred hCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 87664221 12222344455677777787777788888887765
Q ss_pred cccCCcchHHHHHHHHh------------------hhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhh
Q 000201 1700 AISMSPLFLSILDRLKS------------------SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA 1761 (1866)
Q Consensus 1700 ~~~~~~~~~~~~~~l~~------------------~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~ 1761 (1866)
-+ .+..+++.|.+.+ +..|++..+|++|.+|+..++..|.+. ..+.+|+..+..|
T Consensus 1041 lI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~G 1113 (1233)
T KOG1824|consen 1041 LI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDG 1113 (1233)
T ss_pred HH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhh
Confidence 43 2234444444432 356778899999999999999998765 3678999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc------------CcchhhhhHHHHHHHhhcccccch
Q 000201 1762 LHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD------------GSTPVRLAAERCAVHAFQLTRGSE 1829 (1866)
Q Consensus 1762 l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~------------~~~~vk~aae~a~~~l~~~~~~~~ 1829 (1866)
+.|. .|+|.++..++.++|..+|+.+..+++.++.+|.+.+.- +....|++|.||+.+++++++.+
T Consensus 1114 L~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~- 1191 (1233)
T KOG1824|consen 1114 LEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVE- 1191 (1233)
T ss_pred cchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccc-
Confidence 9986 999999999999999999999999999999999988642 34566889999999999998776
Q ss_pred hHHHHHHHhhhh
Q 000201 1830 YIQGAQKFITGL 1841 (1866)
Q Consensus 1830 ~~~~~~~~~~~~ 1841 (1866)
+.+.|.+|...+
T Consensus 1192 ~np~~~df~sqi 1203 (1233)
T KOG1824|consen 1192 KNPQFSDFESQI 1203 (1233)
T ss_pred cChHHHHHHHHh
Confidence 447788887543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=437.82 Aligned_cols=862 Identities=18% Similarity=0.224 Sum_probs=619.3
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 444 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~--- 444 (1866)
.+.+|++.|.+||+.+|+.|.+++......-| .+..|...- . ... ..++|+.+++.++++...
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i~-~---~~~-----~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHIL-A---TSA-----DPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHHH-h---cCC-----ChHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999976654433 233332211 1 111 348999999999998764
Q ss_pred -cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHH
Q 000201 445 -LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 523 (1866)
Q Consensus 445 -~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~ 523 (1866)
++.+...++..-++.....++.+.||.+..+++.++-+.-+.+.|+.|++.+-....+++ ...|+.|+..+..
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s 144 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSS 144 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHh
Confidence 333445567777766677899999999999999888887777799999998888866543 5689999999999
Q ss_pred HhhhhccCC-cchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh------hhhHHHHHHHHHHHHc---CCChhHHH
Q 000201 524 LAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ------DEAPTLVSRLLDQLMK---SDKYGERR 593 (1866)
Q Consensus 524 i~~~l~~~~-~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~------~~~~~~l~~ll~~L~~---~~~~~~R~ 593 (1866)
+...++... |++..+.+.+.+++.+++..|+..++..+..++.... ..+...++.++..+.. .++.+.-.
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 998887754 5788999999999999988899999988877765552 2355666666655543 33444456
Q ss_pred HHHHHHHHHHhhhCcchhhh--cchHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhC---cCchhcHHhHHHHHHHHcC
Q 000201 594 GAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD-RNSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 594 ~A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~-~~~~~~r~~al~al~~L~~~l~---~~~~p~v~~llp~ll~~~~ 667 (1866)
.+..+|..++... +..+++ ..++.+..+.+.+ +.+...|+.|+..+..+++..+ +...+|...++|.++..+.
T Consensus 225 ~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 225 SALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 6666677766654 233322 2566666666543 4567889999999999999843 5567788899999999886
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 668 DQV----------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 668 D~~----------------~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
|.. ......|.+++++++..+++..+ +.+++.+...+.+.+|+.|++++.+|+.+++++++.+
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 421 23566789999999999998876 8899999999999999999999999999999999999
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcch
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 810 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~ 810 (1866)
...+++|++.+++.++|+||+||.+||.|++++...+. |+++. .+
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~ 428 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KH 428 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HH
Confidence 99999999999999999999999999999999998774 22211 01
Q ss_pred hhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhH-HHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 811 LALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~-~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
.+.+.|.+...+.+. ++++..+|+.++.++.+.. ....+.||++.+|. .+..+++.+.+.||+.++.+||+++...+
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 222334444444442 5588888888888888754 33678999999999 77777788899999999999999999998
Q ss_pred CC---ChhhHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHhChhHHHHHHHHH----HHH---hccCChhHHhHHHH
Q 000201 889 EE---NFPDLVSWLLDALKSDN---SNVERSGAAQGLSEVLAALGTVYFEHILPDI----IRN---CSHQRASVRDGYLT 955 (1866)
Q Consensus 889 ~~---~~~~l~~~L~~~L~~~~---~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l----~~~---l~~~~~~vR~~al~ 955 (1866)
+. ||+.+||.|...+.+.. ....|..++.+++.++.++|.+.|.++...+ ... ..+.+...|...+.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 76 88999999999887644 2346678889999999999998665444444 433 33457888999999
Q ss_pred HHHHhhhhhchhhHhHHHHHHHHHHhhccC-CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 956 LFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 956 ~l~~L~~~~g~~f~~~l~~il~~ll~~l~d-~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
+|+.+|..+|++|.||++.++|++++...- ++..+- ... ..++.-.+++|....
T Consensus 588 ~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~--------------d~~-------d~e~~~~~~~~e~~~---- 642 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALS--------------DEE-------DEEEEQDLDGWEVVE---- 642 (1075)
T ss_pred HHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCc--------------Cch-------hhhhccccccchhhc----
Confidence 999999999999999999999999987542 211100 000 000111122232110
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
..+++. .| .......-+..|+..|+.++.....
T Consensus 643 --------------------~~~~e~-------------~~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 643 --------------------LGDKEN-------------IG--------------IRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred --------------------cCCcee-------------ee--------------eeehhHHHHHHHHHHHHHHHHhhhh
Confidence 000000 01 1111223467899999999998888
Q ss_pred hHHHhHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhcc------c----cccchHHHHhcccC-CCCccchhhHHH
Q 000201 1115 TLKEIMPVLMNTLI-SSLASSSSERRQVAGRALGELVRKLGE------R----VLPSIIPILSRGLK-DPSASRRQGVCI 1182 (1866)
Q Consensus 1115 ~l~~~l~~l~~~L~-~~l~~~~~~~R~~A~~~L~~lv~~~~~------~----~l~~llp~L~~~L~-d~~~~vr~~a~~ 1182 (1866)
.|.+|+...++..+ ...-..+..+|.+|+.++..+++..-. . .+..+.|.+...+. ++++.+......
T Consensus 676 ~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~ 755 (1075)
T KOG2171|consen 676 AFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILE 755 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 88899888888333 333466789999999999988875422 1 34556666666665 457778888888
Q ss_pred HHHHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhH---HHHHHHhccCCCchhHH
Q 000201 1183 GLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI---VPTLLHALEDDQTSDTA 1258 (1866)
Q Consensus 1183 ~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~i---lp~Ll~~L~~~~~~~~a 1258 (1866)
++++.+..+|+..+ .++...+...+...+.+...+.+.. ......++. -...+. +.....
T Consensus 756 ~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r-----------~~~~~eed~d~~eee~~~-----e~d~~l 819 (1075)
T KOG2171|consen 756 SFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDR-----------QEEDDEEDDDIEEEEDLD-----EQDAYL 819 (1075)
T ss_pred HHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhhhhhhhHHHHHHh-----hhhHHH
Confidence 99988888875443 2333333333332221111111110 000000000 000000 000011
Q ss_pred HHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHh
Q 000201 1259 LDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 1338 (1866)
Q Consensus 1259 l~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l 1338 (1866)
++. ....++++++..+..|.+++..+.|.++..+.+.....|..+..+++.+
T Consensus 820 l~~----------------------------i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ 871 (1075)
T KOG2171|consen 820 LDA----------------------------ISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDL 871 (1075)
T ss_pred HHH----------------------------HHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 111 1234567777788899999999999999999877755599999999999
Q ss_pred hhccch---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCC
Q 000201 1339 TLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 1402 (1866)
Q Consensus 1339 ~~~~~~---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 1402 (1866)
+..+++ .+.+.+++.++..+.|.+|++|++|.+.+|.++++.+.++.+.....++.|...+..+
T Consensus 872 ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~ 938 (1075)
T KOG2171|consen 872 IEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPP 938 (1075)
T ss_pred HHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcCh
Confidence 998765 5588999999999999999999999999999999999888777777777776666543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=417.59 Aligned_cols=888 Identities=17% Similarity=0.181 Sum_probs=638.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-CCCHhHHHHHHHHHHHHHhhcCC----CC
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE----EN 891 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~-d~~~~vR~~a~~aL~~l~~~~g~----~~ 891 (1866)
.|++.+...+.++|+.|.+.+.++.. .. .+++.|...+. ..++.+|..|+-.+..+....-+ +.
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~--~~---------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAK--TE---------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhc--cc---------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 34555666777899999999998765 22 26677777765 56899999998888888776433 23
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
-..+...++..+..+....+|...++.++++++....+.|+++++.+++..+++++..|+.++..|..++..+|..+.||
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 44577778888888888889999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
+..+.+.+.+++.|+...||..+++|+..++.....+ -..+.....+++.++..+...
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~-----------------~~~~~~~~~llP~~l~vl~~~----- 214 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENN-----------------KSEVDKFRDLLPSLLNVLQEV----- 214 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccc-----------------hHHHHHHHHHhHHHHHHhHhh-----
Confidence 9999999999999998889999999999988765311 001111112233333222111
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchh--hhHHHHHHHH----H--hcCCCcHHHHHHHHHHHHHHhhcChhh---HHHhH
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRD--KRNEVLAALY----M--VRSDVSLSVRQAALHVWKTIVANTPKT---LKEIM 1120 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~--~~~~vl~~L~----~--~~~D~~~~vR~~A~~~l~~l~~~~p~~---l~~~l 1120 (1866)
..++|++........+.+.++.+ .+...+..++ . ...+.+..+|+.|++++..++++.|.. ..++.
T Consensus 215 ---i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 215 ---IQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred ---hhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 01122222233334444444321 2222232222 2 246678899999999999999987643 34466
Q ss_pred HHHHHHHHHhhcCCC----------------HHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHH
Q 000201 1121 PVLMNTLISSLASSS----------------SERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIG 1183 (1866)
Q Consensus 1121 ~~l~~~L~~~l~~~~----------------~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~ 1183 (1866)
+.+++.++..+.+-. ......|.+++..+..++|++ ++|.+++.+...+.+++|..|++++.+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 777777766654211 124678999999999999876 789999999999999999999999999
Q ss_pred HHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhH----hhHHHHHHHhccCCCchhHHH
Q 000201 1184 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDTAL 1259 (1866)
Q Consensus 1184 L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~----~~ilp~Ll~~L~~~~~~~~al 1259 (1866)
++.+.++++ +.+...++++++.+...++|++++||.+|+.|+|++...+.+... +.+.|.|+..+.+....
T Consensus 372 ls~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~---- 446 (1075)
T KOG2171|consen 372 LSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV---- 446 (1075)
T ss_pred HHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch----
Confidence 999888775 456679999999999999999999999999999999888776432 22233444433332210
Q ss_pred HHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHH-HHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHh
Q 000201 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGAL-AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 1338 (1866)
Q Consensus 1260 ~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~L-a~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l 1338 (1866)
.+..+.+.|+..+ ..+.++.+.||++.++...+..+
T Consensus 447 -------------------------rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L------------------ 483 (1075)
T KOG2171|consen 447 -------------------------RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL------------------ 483 (1075)
T ss_pred -------------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH------------------
Confidence 1112233333333 34556777788877776433322
Q ss_pred hhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCC----ChhHHHHHHHHH
Q 000201 1339 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS----DSTTVAAAWEAL 1414 (1866)
Q Consensus 1339 ~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~----~~~v~~~A~~aL 1414 (1866)
..++.+.+|..++.+++..+...+..|.+|++.+++.|...+... ...+|....+|+
T Consensus 484 -------------------~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 484 -------------------LQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred -------------------hcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 344556777888888888888888999999999999999988633 346788888999
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 1494 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~ 1494 (1866)
+.+....+++..-.+...+.+.+-... .+....+..++...+..++.+|
T Consensus 545 sli~~AVGke~F~~~a~eliqll~~~~-------------------------------~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 545 SLIARAVGKEKFLPLAEELIQLLLELQ-------------------------------GSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhhc-------------------------------ccchhhccccHHHHHHHHHHHH
Confidence 988888776544333333322221110 0123345567888888999999
Q ss_pred hhcChhhhhhhhhhhhHHHHHHhcCC-----------------CC------------------HHHHHHHHHHHHHHHHh
Q 000201 1495 EVTSEQSLKEFVIPITGPLIRIIGDR-----------------FP------------------WQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1495 ~~~~~~~l~~~v~~i~~~Li~~l~~~-----------------~~------------------~~vr~~al~~L~~L~~~ 1539 (1866)
+.. ++.|.||.+.++||+++..+-. .+ -.-|..++..|+.+...
T Consensus 594 ~il-g~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~ 672 (1075)
T KOG2171|consen 594 RIL-GDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKE 672 (1075)
T ss_pred HHh-chhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHh
Confidence 998 7899999999999999865311 00 13377899999999999
Q ss_pred cCCCCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc------------cCChhhHHHHHHHHhcc-CChhHHHH
Q 000201 1540 GGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSAL------------STRVDPLVGDLLSSLQV-SDAGIREA 1605 (1866)
Q Consensus 1540 ~~~~~~~~lp~L~~~l~~~l~d-~~~~vR~~Aa~aLg~L~~~------------~~~~~~~l~~L~~~l~~-~~~~vr~~ 1605 (1866)
.+..+.||+.+....++..+.- .+..||.+|+.+++.++.. .+.+..+.+.++..+.+ ++.++...
T Consensus 673 lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~ 752 (1075)
T KOG2171|consen 673 LKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSE 752 (1075)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Confidence 9999999999998866555544 4999999999999998431 12245566777777754 56899999
Q ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhh
Q 000201 1606 ILTALKGVLKHAGK-SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 1684 (1866)
Q Consensus 1606 ~l~aL~~vi~~~~~-~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~ 1684 (1866)
+++++.+++..+|. .+.+.....+...+...+.......+.. -.. ... +....--+..+. ..+...-.
T Consensus 753 vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r----~~~---~~e-ed~d~~eee~~~---e~d~~ll~ 821 (1075)
T KOG2171|consen 753 ILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDR----QEE---DDE-EDDDIEEEEDLD---EQDAYLLD 821 (1075)
T ss_pred HHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhh----hhh---hhh-hhhhhHHHHHHh---hhhHHHHH
Confidence 99999999999995 4777777777766555333221111100 000 000 000000111111 11111222
Q ss_pred hHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCC
Q 000201 1685 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 1764 (1866)
Q Consensus 1685 ~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~ 1764 (1866)
...-.+.++++.....+. ++++.+.+.+...+.++++--|+.|+++++.++.++++.. .++...+++.++..+.|
T Consensus 822 ~i~~i~~~l~k~~k~~f~--p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~---~~~~~~~~p~~~~~~~d 896 (1075)
T KOG2171|consen 822 AISDILAALAKALKGSFL--PFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEAS---AKYKERFLPLVLEALQD 896 (1075)
T ss_pred HHHHHHHHHHHHcccccc--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHcCC
Confidence 344467777777776653 5889999999999998887669999999999999998654 37888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccC---cchhhhhHHHHHHHhhcccccchhHHHHHHHhhhh
Q 000201 1765 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDG---STPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGL 1841 (1866)
Q Consensus 1765 ~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~---~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~ 1841 (1866)
.+++||++|.++++.+|++.++.+++.+...+|.|...+... +...+.|.|+|+.++.|+...... ... ...+
T Consensus 897 ~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~---~i~-vdqv 972 (1075)
T KOG2171|consen 897 SDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPN---RIP-VDQV 972 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCc---cCc-HHHH
Confidence 999999999999999999999999999999999999988764 355788999999999888764311 111 5567
Q ss_pred hhhhhccCCCCCCCCcCc
Q 000201 1842 DARRLSKFPEHSDDSEDS 1859 (1866)
Q Consensus 1842 ~~~~~~~~~~~~~~~~~~ 1859 (1866)
.+.||+|||..+|.+|+.
T Consensus 973 l~~~l~~LPl~~D~eEa~ 990 (1075)
T KOG2171|consen 973 LPAWLSWLPLKEDKEEAV 990 (1075)
T ss_pred HHHHHHhCCCccchhhhh
Confidence 889999999999999875
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=408.61 Aligned_cols=648 Identities=16% Similarity=0.220 Sum_probs=498.4
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchh-----------------eeeecCCchhHHH-HHH
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-----------------WIAVHDPEKSVAE-AAE 355 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~ 355 (1866)
|++.++|.+++|||.++|+.|+.+|.++. .+|++.++..+.++ -++..++.|..++ ...
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 46678899999999999999999999876 56676555555444 3455566665555 678
Q ss_pred HHhhhcCCccCCCh-hhhhhhcCCCCHHHHHHHHHHHHHHH------HhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 000201 356 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATAL------DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 428 (1866)
Q Consensus 356 ~~w~~~~~~~~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 428 (1866)
++|.....+.++++ ..++.+|+++.+..+..|+++++++. ..||+++..+..++.+ .+ +.
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~--------~~-----~~ 144 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE--------EQ-----AS 144 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc--------cc-----ch
Confidence 99998888888888 66789999999999999999999985 4588887776666632 11 33
Q ss_pred chhhHHHHHHHHhhhhcCCCCh----HHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHH----hhccc-chhhhHH-HHH
Q 000201 429 LGRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIID----KHGRD-NVSLLFP-IFE 497 (1866)
Q Consensus 429 ~~R~~~~~~l~~~~~~~~~~~~----~~~~~fli~~~l-~d~~~~vr~~~~~a~~~~i~----~~g~~-~~~~ll~-~le 497 (1866)
.+|+++..|+||+|..++++.+ +.+++.++.++. ++++..||.++++|....+. ++..+ ..+.+|+ +||
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 7999999999999999988753 358888888876 68999999999999765443 33332 3468888 688
Q ss_pred HhhcCCCCChhhhhhHHHHHHHHHHHHh-hhhccCCcchH-HHHHHHHHhcCCCcHH-------HHHHHHhhhhhhh---
Q 000201 498 NYLNKKASDEEKYDLVREGVVIFTGALA-KHLAKDDPKVH-AVVDKLLDVLNTPSEA-------VQRAVSSCLSPLM--- 565 (1866)
Q Consensus 498 ~~L~~~~~~~~~~~~vr~~av~~l~~i~-~~l~~~~~~~~-~l~~~l~~~l~~~~~~-------v~~~~~~~l~~lv--- 565 (1866)
.+ .+.+ ..+|.+|++||.+|. -||+...+++. .+|...+.++++++++ ||+.+|+.=..+.
T Consensus 225 at----q~~d---~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 225 AT----QSPD---EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred cc----cCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 3333 579999999999998 56666778886 5999999999988775 5676665422211
Q ss_pred ------------Hhhh-hhhHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC
Q 000201 566 ------------QSMQ-DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626 (1866)
Q Consensus 566 ------------~~~~-~~~~~~l~~ll~~L~~------~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~ 626 (1866)
+.+. ...+..++.+++.|.+ +++|..-++|+.||..+++..|.+.+. .++||+.+.+++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~ 375 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQN 375 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCC
Confidence 1111 3456788888988886 356999999999999999999888874 899999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHHhC-cCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC
Q 000201 627 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE 705 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~-~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~ 705 (1866)
. ||+.|++|.++||.+.++.. ..+.|++.+.+|.++..+.|+...||++++|+++++++.++....
T Consensus 376 p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~------------ 442 (859)
T KOG1241|consen 376 P-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII------------ 442 (859)
T ss_pred c-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc------------
Confidence 5 69999999999999999976 568999999999999999999999999999999999986652111
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc------------chhHH
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------NPEIA 773 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~------------~~~i~ 773 (1866)
...++..+++.+.+.|+| +|+|..++||++..+++... +|.+.
T Consensus 443 ------------------------n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~ 497 (859)
T KOG1241|consen 443 ------------------------NQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE 497 (859)
T ss_pred ------------------------cHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH
Confidence 123445777788888888 68999999999988885432 13566
Q ss_pred hHHHHHHHhhCCCC---hhHH-HHHHHHHh-ccccccCCcchhhhHHHHHHHhhcC------CCH-------HHHHHHHH
Q 000201 774 SLVPTLLMGLTDPN---DHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRE------RSA-------ETKKKAAQ 835 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~---~~vr-~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d------~~~-------~vr~~a~~ 835 (1866)
.++..|++....++ .+.| .++++|.. ..++.....+....+.+.+...+.. -+. +++...|.
T Consensus 498 ~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 498 AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 77777777765433 2466 46666665 3444444444555555555443321 122 34444555
Q ss_pred HHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHH
Q 000201 836 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 911 (1866)
Q Consensus 836 ~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~ 911 (1866)
.++.+...++. ++.++.+.+|..+...++. .+..+.+.|+.+++.+++.+|+. |.+.+.|+|...|++..++.+
T Consensus 578 ~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGS--DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccc--cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 55665555544 7788999999999999998 55678899999999999999986 788999999999988777755
Q ss_pred HHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc--
Q 000201 912 RSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-- 984 (1866)
Q Consensus 912 R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-- 984 (1866)
-..+.-..|.++++++.+ +.+++|..+++.++++ +..+|...+++||.++..+|.+|.+|+..+++.+.+.-+
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 444444569999999988 6689999999999987 789999999999999999999999999999998887642
Q ss_pred -CC--------ChHHHHHHHHHHHHHHHhhc
Q 000201 985 -DE--------NESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 985 -d~--------~~~VR~~a~~al~~i~~~~~ 1006 (1866)
|+ ..++|+++++++..++..+.
T Consensus 736 ~d~~~~~~~dYvd~LRe~~leay~gi~qglk 766 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEAYTGIIQGLK 766 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 12588888888888887665
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=337.32 Aligned_cols=964 Identities=19% Similarity=0.225 Sum_probs=653.2
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh-
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK- 612 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~- 612 (1866)
...++..+++.|.+.+.+||..+.+|+.+++...+ +.....++.+..+++.+++ +.|.-++.+|..++..+.|..-.
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~ke-q~rdissi~Lktvi~nl~P~~~~~ 123 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKE-QLRDISSIGLKTVIANLPPSSSSF 123 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchh-hhccHHHHHHHHHHhcCCCccccc
Confidence 45788889999999999999999999999998777 4577888888888876654 78999999999988877652211
Q ss_pred -----hcchHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000201 613 -----KYGIAATLREGLADRNSA-KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686 (1866)
Q Consensus 613 -----~~~ii~~L~~~i~~~~~~-~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~ 686 (1866)
...+.+.+.+++....+. ..+-.++..++.....+|..+.++-..++..++.-++.+...||+.|..+++.++.
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~ 203 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS 203 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH
Confidence 224666777766543332 35666777777777788888888878888888888899999999999999999999
Q ss_pred hhcHhhHHhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc---cCCChHHHHHHHHHHHH
Q 000201 687 QLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 687 ~l~~~~v~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L---~D~~~~VR~aA~~aL~~ 762 (1866)
..+.+.+..++..++.+|..+ +...-+..+++|++++..++..+..|++.++|.+...+ +..+.+.|+.+.++++.
T Consensus 204 ~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 204 SCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred hcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 999999999999999999765 45556678999999999999999999999999999999 66778999999999999
Q ss_pred HHhhccc---hhHHhHHHHHHHhh-CCCChh--H-H-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHH
Q 000201 763 VGSVIKN---PEIASLVPTLLMGL-TDPNDH--T-K-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 834 (1866)
Q Consensus 763 l~~~i~~---~~i~~lv~~L~~~l-~d~~~~--v-r-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~ 834 (1866)
|....+. |.+.+++..+++.+ .|||-. . . +--..+-....-...+. -.-=+|-+|.||++|+
T Consensus 284 fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de----------YsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 284 FLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE----------YSDDEDMSWKVRRAAA 353 (1233)
T ss_pred HHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc----------cccccchhHHHHHHHH
Confidence 9876542 44566666666665 477631 1 0 00001100000000000 0001245899999999
Q ss_pred HHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--hcccCCCHHHH
Q 000201 835 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSNVER 912 (1866)
Q Consensus 835 ~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~--~L~~~~~~~~R 912 (1866)
+++..++. +..+.+..++..+-|.+...+++....|+...+.++-.+....+. ..+++-+ ..........+
T Consensus 354 Kcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~s~~ 426 (1233)
T KOG1824|consen 354 KCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTPSDL 426 (1233)
T ss_pred HHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCccch
Confidence 99999987 454566677888999999999999999999999888888775542 2222210 00000000011
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC--hHH
Q 000201 913 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESV 990 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~--~~V 990 (1866)
....+... .++..+-..+++..-..|.+++..+..+....+....+|++.++|.+...+.|.+ .+.
T Consensus 427 ~~L~~~~~------------~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ 494 (1233)
T KOG1824|consen 427 SMLSDQVP------------LIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL 494 (1233)
T ss_pred HHHHhhhH------------HHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence 11111111 1222222233344455788999999999999999999999999999999998864 356
Q ss_pred HHHHHHHHHHHHHhhcccc----hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHH
Q 000201 991 RDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1066 (1866)
Q Consensus 991 R~~a~~al~~i~~~~~~~~----i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~ 1066 (1866)
+..++..+...+...+.+. +..+.|.+.....|+.+++-.+++-..+.++..+.+......++. .
T Consensus 495 ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~--------~--- 563 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA--------S--- 563 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC--------C---
Confidence 6666666666655555543 445667777888999999999999888888876654322111110 0
Q ss_pred HHHHHHHhchhhhHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000201 1067 GRAIIEVLGRDKRNEVLAALYM--VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1144 (1866)
Q Consensus 1067 ~~~l~~~lg~~~~~~vl~~L~~--~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~ 1144 (1866)
.+...++..... ..+|.+.+||+.|+.+++.++.+++..+...+|..++.++++++ ++-.|..|.+
T Consensus 564 ----------~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Avk 631 (1233)
T KOG1824|consen 564 ----------PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVK 631 (1233)
T ss_pred ----------hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHH
Confidence 011111111111 24788999999999999999999998888999999999999995 5678999999
Q ss_pred HHHHHHHHhc----cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHH
Q 000201 1145 ALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRE 1220 (1866)
Q Consensus 1145 ~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~ 1220 (1866)
++..++...- .+++..++|.+...++......|.+...++-.++...+...-...++.++..+-..+.+.+-.+-+
T Consensus 632 Alt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~ 711 (1233)
T KOG1824|consen 632 ALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQ 711 (1233)
T ss_pred HHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9998875421 135667777777777666667788888888888777654333344566666677777888888888
Q ss_pred HHHHHHHHHHHHhch---hhHhhHHHHHHHhccCCCchhHHHHHHHHHh----hcccccc-chhhhhhhhcCCccc----
Q 000201 1221 SAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQIL----SVRTTAV-LPHILPKLVHLPLSA---- 1288 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il----~~~~~~i-lp~Lip~L~~~~~~~---- 1288 (1866)
.|...+..+...... .....+++.++..++++--.+.++..+...+ ..+.+.+ +-.++..+..+-...
T Consensus 712 ~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~ 791 (1233)
T KOG1824|consen 712 LAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDG 791 (1233)
T ss_pred HHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccc
Confidence 888877777654332 2345678888888888776666555443322 1111111 111111111111000
Q ss_pred hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc---HHHHHHHHHhccCCCchhH
Q 000201 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASI 1365 (1866)
Q Consensus 1289 ~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~ll~~L~~~l~~~~~~v 1365 (1866)
..-+|.. +...|...+...+++.. ...++..+.. ...+..+
T Consensus 792 l~kqa~~----------------------------------siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~i 835 (1233)
T KOG1824|consen 792 LHKQAYY----------------------------------SIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSI 835 (1233)
T ss_pred hhHHHHH----------------------------------HHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhH
Confidence 0011111 12234444444444222 2333333333 2344678
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhh
Q 000201 1366 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
|..|.-.+|.+......... +.+-..++..++.++++|+.+|.-||+.+.... ++.+++.+.+.+.+
T Consensus 836 kvfa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn----l~~yLpfil~qi~s------ 902 (1233)
T KOG1824|consen 836 KVFALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGN----LPKYLPFILEQIES------ 902 (1233)
T ss_pred HHHHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----hHhHHHHHHHHHhc------
Confidence 88888888888765443333 344446778899999999999999999987543 33344444333321
Q ss_pred hhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHH
Q 000201 1446 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 1525 (1866)
Q Consensus 1446 ~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~v 1525 (1866)
.+.-++--.+.+.+++...+.+.++
T Consensus 903 ---------------------------------qpk~QyLLLhSlkevi~~~svd~~~---------------------- 927 (1233)
T KOG1824|consen 903 ---------------------------------QPKRQYLLLHSLKEVIVSASVDGLK---------------------- 927 (1233)
T ss_pred ---------------------------------chHhHHHHHHHHHHHHHHhccchhh----------------------
Confidence 1222233344455555444333334
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHH
Q 000201 1526 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 1605 (1866)
Q Consensus 1526 r~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~ 1605 (1866)
|+.+.+|..+.+......+..|...+.|||.++.+.| +.++|.|-..+.++.+..|.+
T Consensus 928 --------------------~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~ 985 (1233)
T KOG1824|consen 928 --------------------PYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSS 985 (1233)
T ss_pred --------------------hhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhh
Confidence 4445555555555555566789999999999987654 678999988888888999999
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCC
Q 000201 1606 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679 (1866)
Q Consensus 1606 ~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~ 1679 (1866)
++.|++..+..-...+. ++..+.+.-....+.++|..||+.+...+...+++-| .-+..+++++++++.+++
T Consensus 986 vvsavKfsisd~p~~id-~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-slIrDllpeLLp~Ly~eT 1057 (1233)
T KOG1824|consen 986 VVSAVKFSISDQPQPID-PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-SLIRDLLPELLPLLYSET 1057 (1233)
T ss_pred hhheeeeeecCCCCccC-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-hHHHHHHHHHHHHHHHhh
Confidence 99999988887777777 5655555555556899999999999999999998887 477778888777654443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=329.92 Aligned_cols=704 Identities=17% Similarity=0.225 Sum_probs=513.5
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCC
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT 447 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~ 447 (1866)
++..+++--.|||..+|+.+...+-.+-. +||+. +++-.+.. +++ + +....|+.++..|++....-..
T Consensus 14 ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfn-nYL~~IL~----~~~-~-----~d~~~Rs~aGLlLKNnvr~~~~ 81 (885)
T KOG2023|consen 14 QLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDFN-NYLIYILI----RAK-S-----EDVPTRSLAGLLLKNNVRGHYN 81 (885)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc-ccchh-ceeeEEEe----ccc-c-----cchhHHHHhhhhHhcccccccc
Confidence 34667788889999999999988877653 78854 22222210 111 1 1346799999999987543222
Q ss_pred CChHHHHHHHH---hhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHH
Q 000201 448 KDLPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 524 (1866)
Q Consensus 448 ~~~~~~~~fli---~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i 524 (1866)
.-......|+- -++++|.++-+|......++.++..+|-.+|+.++|.+-.+|++++ ....++|+..|.+|
T Consensus 82 ~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d------~n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 82 SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPD------YNTCEGAFGALQKI 155 (885)
T ss_pred CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCc------ccccchhHHHHHHH
Confidence 22224455542 2578999999999888888888999999999999999999988754 35678999999999
Q ss_pred hhh----hcc--CCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH---cCCChhHHHHH
Q 000201 525 AKH----LAK--DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGA 595 (1866)
Q Consensus 525 ~~~----l~~--~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~---~~~~~~~R~~A 595 (1866)
+.. ++. ....++.+++++++..+++++..|+.+..|+..++......+...++.+++.++ +++++.+|+..
T Consensus 156 cEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~v 235 (885)
T KOG2023|consen 156 CEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNV 235 (885)
T ss_pred HhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 843 332 123588999999999999999999999999988876655555555555555554 57788999999
Q ss_pred HHHHHHHHhhhCcchhhh--cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh--CcCchhcHHhHHHHHHHHcCC---
Q 000201 596 AFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFSD--- 668 (1866)
Q Consensus 596 ~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l--~~~~~p~v~~llp~ll~~~~D--- 668 (1866)
+.++.-+.... ++++.+ ..|+.++.+..++.++ .+.-.|+..+-.+++.. ...+.||+.+++|+++..+.-
T Consensus 236 C~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE-~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 236 CRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDE-NVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcch-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999988865 444322 2688888888888665 45556777788888863 356889999999999876630
Q ss_pred --------C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 669 --------Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 669 --------~---------------------------------------------~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
. +.+.|+..+.+++.++..++.+-.+.
T Consensus 314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~ 393 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPI 393 (885)
T ss_pred cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHH
Confidence 0 14799999999999999888888899
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
++|.+.+.|.++.|.+|.+++.+||++++++-+.+-++||.++|.++.+|+|..|-||...||+|+++++++.+..-.+
T Consensus 394 l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~- 472 (885)
T KOG2023|consen 394 LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE- 472 (885)
T ss_pred HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875421100
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 776 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
.+.-++.-+++.+-|.+.+|+.+||.++..+-+..+ .++.||+.
T Consensus 473 ----------------------------------~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~--~eLVp~l~ 516 (885)
T KOG2023|consen 473 ----------------------------------YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG--EELVPYLE 516 (885)
T ss_pred ----------------------------------hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 111222333444456667888888888888887443 47889999
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK--SDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-----~~~~l~~~L~~~L~--~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
.|+..+...++.-..+--.....|+|++++.+|.. |+.-++|.|++... ++++ ..--...++++.++.++|.
T Consensus 517 ~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-KdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 517 YILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-KDLFPLLECLSSIASALGV 595 (885)
T ss_pred HHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-chHHHHHHHHHHHHHHHhc
Confidence 99888888776422222235677899999988753 67778888877543 2222 2455778999999998886
Q ss_pred hHH---HH-------HHHHHHHHh---cc------CChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCC
Q 000201 929 VYF---EH-------ILPDIIRNC---SH------QRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADEN 987 (1866)
Q Consensus 929 ~~l---~~-------ll~~l~~~l---~~------~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~ 987 (1866)
..+ ++ ++....+.. +. ++...-..++.++..++..+|...++.+ +.+...++.++.|+.
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 521 22 222112211 11 1223334678999999999999888876 448899999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccc---hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchH
Q 000201 988 ESVRDAALGAGHVLVEHYATTS---LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1064 (1866)
Q Consensus 988 ~~VR~~a~~al~~i~~~~~~~~---i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e 1064 (1866)
++||..+..-++.+.+.+.+.. +..++|.+...+.-++-.+-..++..+|++.-+.... ..
T Consensus 676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~----------------~~ 739 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK----------------MK 739 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh----------------hh
Confidence 9999999999998888765442 3446666655555455567778888888886543210 00
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHH
Q 000201 1065 AHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQV 1141 (1866)
Q Consensus 1065 ~~~~~l~~~lg~~~~~~vl~~L~~~--~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~ 1141 (1866)
.+...++..|+.. +......+-+...-++|.+.-..|..+.++++.+++.-+..+.. .+.+.+..
T Consensus 740 ------------~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~s 807 (885)
T KOG2023|consen 740 ------------QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKES 807 (885)
T ss_pred ------------hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHH
Confidence 1223455555543 33444566677777889999889999999999999888776663 45577889
Q ss_pred HHHHHHHHHHHhcccc
Q 000201 1142 AGRALGELVRKLGERV 1157 (1866)
Q Consensus 1142 A~~~L~~lv~~~~~~~ 1157 (1866)
|.+.+..++..-+..+
T Consensus 808 AFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 808 AFRGLCNMINVNPSGV 823 (885)
T ss_pred HHHHHHHheeeCchhh
Confidence 9999998887655443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=310.00 Aligned_cols=685 Identities=15% Similarity=0.137 Sum_probs=463.9
Q ss_pred hhhHHHHHhh-hcCCChhHHHHHHhhhccCccccCCCCCcccccc-----------------chheeeecCCchhHHH-H
Q 000201 293 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-----------------TSLWIAVHDPEKSVAE-A 353 (1866)
Q Consensus 293 ~~~~~~~l~~-~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-~ 353 (1866)
..|+.+|.++ ++|||+++|..++.+|.+.. +.++..++.++ ..+.++...+++..++ -
T Consensus 3 ~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~---~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 3 KSEFRCLGKNHVLSPDPNARLRAEAQLLELQ---SGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred hHHHHHHHhcccCCCCCCccccHHHHHHHhc---cccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 4567788877 59999999999999998875 33433333322 2334465666666555 6
Q ss_pred HHHHhhhcCCccCCCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 354 AEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD------EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 354 ~~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
+.++|.....+.+++. ...+.+|.++.+..-..|++.++++.. .||+++.....+. .+. +
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv--------g~e-----q 146 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV--------GDE-----Q 146 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc--------ccc-----C
Confidence 8899998777777777 556799999999999999999999852 3666655444444 121 2
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChH----HHHHHHHhhhc-CCCcHHHHHHHHHHHHH-HHHhhc----ccchhhhHH-H
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLP----VIMTFLISRAL-ADTNADVRGRMLNAGIM-IIDKHG----RDNVSLLFP-I 495 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~----~~~~fli~~~l-~d~~~~vr~~~~~a~~~-~i~~~g----~~~~~~ll~-~ 495 (1866)
|..+++....+++|+|+.-.|+.+. .++..++.+++ +++...||.+++.|... .+...| ....+++|+ +
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv 226 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV 226 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence 5567888899999999987775543 35556666776 58899999999999665 332222 234578888 5
Q ss_pred HHHhhcCCCCChhhhhhHHHHHHHHHHHHh-hhhccCCcchH-HHHHHHHHhcCCCcHHH-------HHHHHhhhhhh--
Q 000201 496 FENYLNKKASDEEKYDLVREGVVIFTGALA-KHLAKDDPKVH-AVVDKLLDVLNTPSEAV-------QRAVSSCLSPL-- 564 (1866)
Q Consensus 496 le~~L~~~~~~~~~~~~vr~~av~~l~~i~-~~l~~~~~~~~-~l~~~l~~~l~~~~~~v-------~~~~~~~l~~l-- 564 (1866)
||.+ ...+ .+++.+|+.|+.+|. -+++-..++++ .++..+...+++++++| |+.+++.=...
T Consensus 227 ceat----q~~d---~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 227 CEAT----QGND---EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred ehhc----cCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 8887 3333 579999999999998 45555567776 57788888899998765 44444431100
Q ss_pred -------h--Hhhh---hhhHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC
Q 000201 565 -------M--QSMQ---DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626 (1866)
Q Consensus 565 -------v--~~~~---~~~~~~l~~ll~~L~~------~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~ 626 (1866)
+ ..++ ....+.++.++..|.+ +++|...++|+.||-.+++..|...+. .++.|+.+.+++
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~ 377 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRS 377 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccC
Confidence 0 1111 1245678888888875 457999999999999999988877764 489999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHHhC-cCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC
Q 000201 627 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE 705 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~-~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~ 705 (1866)
+ +|+.|++|+++||.+.++.. ..+.+++.+.+|.+...+.|+..-|.++++||+++|+..+....
T Consensus 378 ~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i------------- 443 (858)
T COG5215 378 E-SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMII------------- 443 (858)
T ss_pred c-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhc-------------
Confidence 4 69999999999999999876 45788899999999999999999999999999999987553210
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc----------hhHHhH
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------PEIASL 775 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~----------~~i~~l 775 (1866)
....|++..+...+..+.| +|.+..+++|+...++.++.. +.+..+
T Consensus 444 -----------------------~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai 499 (858)
T COG5215 444 -----------------------SPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAI 499 (858)
T ss_pred -----------------------CccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHH
Confidence 0112445555555556666 577777777777777665542 122334
Q ss_pred HHHHHHhhC--CCChhHH-HHHHHHHh-ccccccCCcchhhhHHHHHHHhhcC--------CCH-------HHHHHHHHH
Q 000201 776 VPTLLMGLT--DPNDHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRE--------RSA-------ETKKKAAQI 836 (1866)
Q Consensus 776 v~~L~~~l~--d~~~~vr-~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d--------~~~-------~vr~~a~~~ 836 (1866)
+..|++... +...+.| ..+.+|.. ..+......+.++.+...+.+.+.. -.. ++...-+..
T Consensus 500 ~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~v 579 (858)
T COG5215 500 LNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGV 579 (858)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 444443321 1112334 23333332 1233222223333333333333221 011 333333334
Q ss_pred HHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH-hHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHH
Q 000201 837 VGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 837 l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~-~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+..++. +.+.++.+..+++|..+.+.++...+ .+-.....+++.+...+++. |.+.++|+|...+. ..+..+-
T Consensus 580 l~aiir--~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~ 656 (858)
T COG5215 580 LEAIIR--TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVL 656 (858)
T ss_pred HHHHHH--hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHH
Confidence 444443 23456778888999999999987744 45567889999999988865 77889999999884 3444344
Q ss_pred HHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CC
Q 000201 913 SGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DE 986 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~ 986 (1866)
..+...++.+++.+|.+ +.+.++..+.+.++++ +.++|...+++|+.++..+|..|.+|++.++-.+.+.-. ++
T Consensus 657 ~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p 736 (858)
T COG5215 657 NSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 45555569999999988 5688999999999886 788999999999999999999999999999877766532 11
Q ss_pred -C-----hH----HHHHHHHHHHHHHHhhcccchhchHHhHhcc-------cCCCch--HHHHHHHHHHHHHHHHhc
Q 000201 987 -N-----ES----VRDAALGAGHVLVEHYATTSLPLLLPAVEDG-------IFNDNW--RIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 987 -~-----~~----VR~~a~~al~~i~~~~~~~~i~~llp~l~~~-------l~d~~w--~vR~~s~~ll~~ll~~~~ 1044 (1866)
+ .+ ++.....++-.|..... ..++.++|.+... ..|++- ..-++++.++|++..-.+
T Consensus 737 ~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~-nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfp 812 (858)
T COG5215 737 HSDEVYVDDYRKNAVQLVNCAYVGIGDSSK-NRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFP 812 (858)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCC
Confidence 1 12 33444445555554432 2244556654322 234332 234677888888875554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-28 Score=285.16 Aligned_cols=774 Identities=18% Similarity=0.200 Sum_probs=508.0
Q ss_pred hccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc-cc--ccCCcchhhhHHHHHHH
Q 000201 744 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-FV--NTVDAPSLALLVPIVHR 820 (1866)
Q Consensus 744 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~-~~--~~~~~~~l~~l~p~L~~ 820 (1866)
-...+++.+|+++.+.+.++-. -|.+...+-.++......+..+|.+...+.... -. ..........+-..+++
T Consensus 21 ~s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~ 97 (885)
T KOG2023|consen 21 NSQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLH 97 (885)
T ss_pred hccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHh
Confidence 3456789999999999988754 233322222222222333344565555554411 11 12223456667777888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC--------CCh
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENF 892 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~--------~~~ 892 (1866)
++.+.++-+|....-++..+++. .-....+.++|.|.+++..++....+.|+.||..+++...+ .-+
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl 172 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL 172 (885)
T ss_pred hccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch
Confidence 99999988887655555544442 12345689999999999999999999999999999885432 235
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhH
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 969 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 969 (1866)
.-++|.+++..+.. ++..|..+..++..++-.-... .++.++..++...++++++||...+.+|..+-..-+..+.
T Consensus 173 ~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 56899999888765 5669999888886655433322 5688899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh-c----ccchhchHHhHhcccCCCchHHHHHHHHHHH-------
Q 000201 970 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-A----TTSLPLLLPAVEDGIFNDNWRIRQSSVELLG------- 1037 (1866)
Q Consensus 970 ~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~-~----~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~------- 1037 (1866)
||+..+++.++....|.+++|...|.+.+-.+.+.- . ...++.++|-+.+++...+..+- +++
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~-----LL~~~eeD~~ 326 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII-----LLKNNEEDES 326 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH-----HhcCcccccc
Confidence 999999999999999999999888877777666532 1 12345677777776643222111 010
Q ss_pred ----------HHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000201 1038 ----------DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1107 (1866)
Q Consensus 1038 ----------~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~ 1107 (1866)
.+...-.-..+....+++++||+++.+ -....|..|+.++..+.-
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd-------------------------D~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD-------------------------DAFSDWNLRKCSAAALDV 381 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccc-------------------------cccccccHhhccHHHHHH
Confidence 000000000000000000111111100 123468899998888888
Q ss_pred HhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc---cccchHHHHhcccCCCCccchhhHHHHH
Q 000201 1108 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGL 1184 (1866)
Q Consensus 1108 l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vr~~a~~~L 1184 (1866)
++...+. +++|.++|.+...|.+.++.+|.++..++|.+++++-.. .+|.++|.+...|.|+.+-+|.-.|++|
T Consensus 382 Lanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 382 LANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 8877765 678999999999999999999999999999999887554 5788999999999999999999999999
Q ss_pred HHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHH
Q 000201 1185 SEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQ 1264 (1866)
Q Consensus 1185 ~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~ 1264 (1866)
+..........-..|+..++..+.+.+-|.+..|+++|+.||..+-+..|. +++|
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp--------------------- 513 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVP--------------------- 513 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHH---------------------
Confidence 987554433333467777788888888899999999999999877665543 2333
Q ss_pred HhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc-
Q 000201 1265 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID- 1343 (1866)
Q Consensus 1265 il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~- 1343 (1866)
|+..|+..++..+..-...--.....+++++..+++
T Consensus 514 -------------------------------------------~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 514 -------------------------------------------YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 222222222222211000000001123333333332
Q ss_pred ----hhcHHHHHHHHHhc---cCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 000201 1344 ----EEGVESLVSELLKG---VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416 (1866)
Q Consensus 1344 ----~~~~~~ll~~L~~~---l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~ 1416 (1866)
+.+++-+||.|++. ++|+|... ---++++..+....+..|.+|.+.+....+.++. .++..
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~-----------~t~q~ 618 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQ-----------KTLQL 618 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHH-----------HHHHH
Confidence 24577777777653 56665443 4556777777777777788887777666655542 11222
Q ss_pred HHhcCCc--------chhh---hhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHH
Q 000201 1417 VVASVPK--------EVQP---SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQ 1485 (1866)
Q Consensus 1417 l~~~~~~--------~~l~---~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~ 1485 (1866)
+.+.... +.+- .++.-+.+.+.+. +..+. .-+.++.++.+++.+..+++|+.
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~--------------ie~Lv---a~snl~~lll~C~~D~~peVRQS 681 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH--------------IEPLV---AQSNLLDLLLQCLQDEVPEVRQS 681 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc--------------hHHHh---hhccHHHHHHHHhccCChHHHHH
Confidence 2222221 1110 1111111111100 00000 01226788889999999999999
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--C
Q 000201 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--T 1563 (1866)
Q Consensus 1486 a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~ 1563 (1866)
+...+|++++.+ .+.+.|+...+++.+...+.. ..-.+-..|..++|++..++|...++|+..++..++..++.+ .
T Consensus 682 ~FALLGDltk~c-~~~v~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~ 759 (885)
T KOG2023|consen 682 AFALLGDLTKAC-FEHVIPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTP 759 (885)
T ss_pred HHHHHHHHHHHH-HHhccchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCch
Confidence 999999999998 778999988887766654433 234677889999999999999999999998888888887776 5
Q ss_pred HHHHHHHHHHHHHHHhc-----cCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Q 000201 1564 RTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 1637 (1866)
Q Consensus 1564 ~~vR~~Aa~aLg~L~~~-----~~~~~~~l~~L~~~l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l 1637 (1866)
.++-...+..+|++..+ .|+++.++......+++ .|.+-+.+++..+..++...+..+. ....-+...+.+ .
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv-~~~~f~c~aiAs-w 837 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV-SSFIFICDAIAS-W 837 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh-hhhHHHHHHHhc-c
Confidence 68889999999999543 46777788887777765 3567799999999999876555443 122222222222 2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcC
Q 000201 1638 YHDDDHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1638 ~~~~~~vr~~aa~~l~~L~~~~~ 1660 (1866)
.+.++..|....+.|.......+
T Consensus 838 ~np~~~l~~~f~kiL~g~k~qvg 860 (885)
T KOG2023|consen 838 SNPEDDLRDEFYKILQGFKNQVG 860 (885)
T ss_pred cChHHHHHHHHHHHHHHHHHHhh
Confidence 34456667666666655544444
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-23 Score=275.52 Aligned_cols=1342 Identities=15% Similarity=0.144 Sum_probs=762.1
Q ss_pred hhhhhhcCCC--CHHHHHHHHHHHHHHHHhCCCc---h---HHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHh
Q 000201 370 SGLFKALSHS--NYNVRLAAAEALATALDEYPDS---I---QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 441 (1866)
Q Consensus 370 ~~ll~~l~~~--~~~vr~~aa~~l~~~~~~~~~~---~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~ 441 (1866)
..+++.|.+. +...|+.+...|..+.+..++. + .+.+..|.... .. . ...+|..++.+|..+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL----~s-g-----~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLL----RS-G-----TLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHH----cC-C-----CHHHHHHHHHHHHHH
Confidence 5566666654 6677888888887776544331 1 11233333322 11 1 245777777778877
Q ss_pred hhhc-------CCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhccc-c------hhhhHHHHHHhhcCCCCCh
Q 000201 442 ADVL-------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-N------VSLLFPIFENYLNKKASDE 507 (1866)
Q Consensus 442 ~~~~-------~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~-~------~~~ll~~le~~L~~~~~~~ 507 (1866)
+.+- ...-++.++ ..|.+.+.+.|..+..+...+-..+..+ + ....+|.|-.++.+...
T Consensus 86 S~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk-- 158 (2102)
T PLN03200 86 CKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-- 158 (2102)
T ss_pred hcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch--
Confidence 6531 111222222 2345667888888887766654332111 1 13345555555554332
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccCCcc-hH-HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhh-----hHHHHHHHH
Q 000201 508 EKYDLVREGVVIFTGALAKHLAKDDPK-VH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLL 580 (1866)
Q Consensus 508 ~~~~~vr~~av~~l~~i~~~l~~~~~~-~~-~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ll 580 (1866)
.+..+++.++..|..++.+-+..... ++ ..++.++..|+++++..|..++.++..++....+. ....++.++
T Consensus 159 -~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 159 -QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLL 237 (2102)
T ss_pred -hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 12346777788888888654322111 12 37888999999999999988888776555432211 123356666
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHhhhC--cchhhhcchHHHHHHHHhCCC--------cHHHHHHHHHHHHHHHHHhCcC
Q 000201 581 DQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRN--------SAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 581 ~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~l~~~~ii~~L~~~i~~~~--------~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.-|.++++..+|..|+++|..++.+-. ...+...+.+|.|.+.+.... +...++-|+.+++.|+.+...
T Consensus 238 ~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~- 316 (2102)
T PLN03200 238 KLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSA- 316 (2102)
T ss_pred HHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchh-
Confidence 655445566899999999999997421 122334567888887775322 123366788888888865322
Q ss_pred chhcHH---------------------------------------hHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcH
Q 000201 651 FEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSA 690 (1866)
Q Consensus 651 ~~p~v~---------------------------------------~llp~ll~~~~D~~~~-VR~~a~~al~~i~~~l~~ 690 (1866)
+-+++. .+.+.|.+++.++++. +.+.+.+++..++.+..-
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l 396 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYL 396 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Confidence 111110 1123333444433333 234444444333222211
Q ss_pred h-hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 691 Q-GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 691 ~-~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
. .+ ....+.|+..+...+-.++..++..|.+++.+..+..... -...+|.|+++|...++.+|..|+++++.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0 01 2234556666677778899999999999997755432211 125789999999999999999999999999863
Q ss_pred ccch--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh--hhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 IKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i~~~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l--~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
-.+. .+ ...+|.|.+.+..++..++ +|...+.+...........+ ...+|.|...+++.+++.|..++.++.+
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3221 11 4689999999998888777 57777766332110001112 3568889999999999999999999999
Q ss_pred HhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-------hhhHHHHHHHhcccCCCHHHH
Q 000201 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-------~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+... ++.. .++.+..++...++.++..+.++++.+......+. ....++.|.+.+.+++ ...+
T Consensus 557 Li~~-~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ik 626 (2102)
T PLN03200 557 LVRT-ADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQ 626 (2102)
T ss_pred HHhc-cchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHH
Confidence 9873 2321 33556667888888999999999999877444321 1357788888887664 4588
Q ss_pred HHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh-HhHHH-HHHHHHHhhccCC
Q 000201 913 SGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDGLADE 986 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f-~~~l~-~il~~ll~~l~d~ 986 (1866)
..++..|+.++..-... ...+.+|.++..+.+.+..++..+.++++++.......- ..++. .++|++.+.+.+.
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 89999999888643221 235678999999999999999999999999997443321 22333 4899999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhccc--ch-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcch
Q 000201 987 NESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1063 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~--~i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~ 1063 (1866)
+.+++..++.++..+...-... .. ...+|.+.+.+.+.+.+.|..+...+..+....+ .+
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~----- 769 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VD----- 769 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hh-----
Confidence 9999999999999887643211 11 2357888888888889999999999988865422 00
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHhhc--------ChhhHHHhHHHHHHHHHHhhcC
Q 000201 1064 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVAN--------TPKTLKEIMPVLMNTLISSLAS 1133 (1866)
Q Consensus 1064 e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~--A~~~l~~l~~~--------~p~~l~~~l~~l~~~L~~~l~~ 1133 (1866)
+.....+...| .+..|...++..+...-.. |++++..++.. .|+..---.|.-+..+++++.+
T Consensus 770 -~~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~ 842 (2102)
T PLN03200 770 -DVLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE 842 (2102)
T ss_pred -HHHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc
Confidence 00111112222 3444444454444444444 88888877752 1333333345556778888899
Q ss_pred CCHHHHHHHHHHHHHHHHHhc----cc--cccchHHHHh-cccCCCCccchhhHHHHHHHHHHhhchhhH-----HhhHh
Q 000201 1134 SSSERRQVAGRALGELVRKLG----ER--VLPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----LSFMD 1201 (1866)
Q Consensus 1134 ~~~~~R~~A~~~L~~lv~~~~----~~--~l~~llp~L~-~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-----~~~l~ 1201 (1866)
.++.+...|...|.++|+.-+ +. ..+..+..+. +.+++++.++|.+....|-.-.+.+....+ ..|..
T Consensus 843 ~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (2102)
T PLN03200 843 GHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLK 922 (2102)
T ss_pred CChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHH
Confidence 999999999999999997432 11 1233333332 345677889998876655443333322111 23555
Q ss_pred hHHHHHHHhhcCCc------HHHHHHHHHHHHH-HHHHh------ch-hhHhh-HHHHHHHhccCCCch-------hHHH
Q 000201 1202 ELIPTIRTALCDSI------LEVRESAGLAFST-LFKSA------GM-QAIDE-IVPTLLHALEDDQTS-------DTAL 1259 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~------~~vr~~A~~al~~-l~~~~------g~-~~~~~-ilp~Ll~~L~~~~~~-------~~al 1259 (1866)
.++..+...+...+ .+++.... .... .+... ++ ....+ +-=.|+..+-+.+.. .+++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~ 1001 (2102)
T PLN03200 923 LLIQALVDMLKQNSKKESLSIEIQTPRG-FLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGI 1001 (2102)
T ss_pred HHHHHHHHHHhccCcccccceeecCCcc-chhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccH
Confidence 66666655543211 11111000 0000 00000 00 00111 111333333222111 2344
Q ss_pred HHHHHHhhccccccchhhhhhhhcCCccchhHH-----HHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-----ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1260 ~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~-----al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
+++.+-++.+... |. - ........ -++.+.+-..-...+-.-.++|.|...+++++..-|..+..+
T Consensus 1002 ~~~~~~~~~~~~~--~q----~---~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1072 (2102)
T PLN03200 1002 EVLTEKLASYTSN--RQ----A---EFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQA 1072 (2102)
T ss_pred HHHHHHHHhhccC--cc----c---cccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHH
Confidence 4444322211000 11 0 00000011 111111111111223344556666666666655556666666
Q ss_pred HhHhhhccc-----------------------hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHH
Q 000201 1335 AETVTLVID-----------------------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 1391 (1866)
Q Consensus 1335 l~~l~~~~~-----------------------~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~i 1391 (1866)
+..++..-+ +..+..+.....+. .-+|.--...+..+|+.............
T Consensus 1073 ~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~-----~l~~~~~~~~le~lf~~~~ir~~~~a~~~ 1147 (2102)
T PLN03200 1073 LASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEF-----SLVRNPDQVALERLFRVEDIRVGATARKA 1147 (2102)
T ss_pred HHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHh-----hccccHHHHHHHHHhhhhhhcchHHHHHH
Confidence 664443110 01111121111111 11222233456667766555566667788
Q ss_pred HHHHHHHhCCCC--hhHHHHHHHHHHHHHhcCCcc--hhh--hhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCC---
Q 000201 1392 ISTLIVLLSDSD--STTVAAAWEALSRVVASVPKE--VQP--SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK--- 1462 (1866)
Q Consensus 1392 l~~L~~ll~d~~--~~v~~~A~~aL~~l~~~~~~~--~l~--~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~--- 1462 (1866)
++.|..+++... +.+|..|...|..+.+..... .+. ..++.+...+.................+ +..+.
T Consensus 1148 Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~I--L~~~~e~~ 1225 (2102)
T PLN03200 1148 IPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRI--LFSSPELR 1225 (2102)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHH--HhCCHHHH
Confidence 888999888544 467888888888888654421 100 1122222222211000000000000000 00000
Q ss_pred ---CccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC-------hhhhhhhhh-----------hhhHHHHHHhcCCC
Q 000201 1463 ---ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS-------EQSLKEFVI-----------PITGPLIRIIGDRF 1521 (1866)
Q Consensus 1463 ---~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~-------~~~l~~~v~-----------~i~~~Li~~l~~~~ 1521 (1866)
.-...+..++..+..|+.+.|..++..|..+...-. .+.+.|.+. ..+..|++++.++.
T Consensus 1226 ~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~i 1305 (2102)
T PLN03200 1226 RHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNP 1305 (2102)
T ss_pred HHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCC
Confidence 011245677778888999999999999988876531 012223322 45566677777654
Q ss_pred CH-----HHHHHHHHH----------------HHHHHHhc-CC-C--CCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000201 1522 PW-----QVKSAILST----------------LSIIIRKG-GI-A--LKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576 (1866)
Q Consensus 1522 ~~-----~vr~~al~~----------------L~~L~~~~-~~-~--~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~ 1576 (1866)
+. +++.+++.. +..++... +. . .++---..++.++..+.|+...+...|..+|-.
T Consensus 1306 s~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~ 1385 (2102)
T PLN03200 1306 SKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDR 1385 (2102)
T ss_pred ChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHH
Confidence 33 234466666 33333210 00 1 111112345667777777666668888888888
Q ss_pred HHhcc---------CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHH
Q 000201 1577 LSALS---------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 1647 (1866)
Q Consensus 1577 L~~~~---------~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~ 1647 (1866)
|.... +-..|++. .+-..+....+.++.+|..+....+....+....-++..+...+....+.+...
T Consensus 1386 Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkek 1461 (2102)
T PLN03200 1386 LLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSA 1461 (2102)
T ss_pred HhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHH
Confidence 85432 22333443 222234566788888887776332222332223333444444444456778888
Q ss_pred HHHHHHHHHhhcCh----hH---HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccC-CcchHHHHHHHHhhhc
Q 000201 1648 AASILGIMSQCMED----GQ---LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLK 1719 (1866)
Q Consensus 1648 aa~~l~~L~~~~~~----~~---~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~~~~~l~~~~~ 1719 (1866)
+++++.-+..+-.- +. ..+++-.++ +... +..+.|++..+|..++++. +..-. .--....+..++..+.
T Consensus 1462 AaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~al~~l~~i~e~~-~~~~~~~~~~~~~i~~Li~lL~ 1538 (2102)
T PLN03200 1462 IAELLRILTNNSSIAKGQSAAKVVEPLFLLLT-RPDL-GTWGQHSALQALVNILEKP-QCLASLTLTPSQAIEPLIPLLE 1538 (2102)
T ss_pred HHHHHHHhccchhhccccchhhhhHHHHHHHh-ccCc-ceecHHHHHHHHHHHHhCc-chhhhhhcCccchHHHHHHHHc
Confidence 88886665432110 11 223333222 2222 2224566777777777663 22211 1123457889999999
Q ss_pred CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhh
Q 000201 1720 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791 (1866)
Q Consensus 1720 ~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~ 1791 (1866)
|.++.+++.|+++++.++....-++ +..-...+.++++.+.+..+..|+.|+.++......-|..+..+
T Consensus 1539 s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ 1607 (2102)
T PLN03200 1539 SPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADA 1607 (2102)
T ss_pred CCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHc
Confidence 9999999999999998887653211 12334578899999999999999999999998888877777665
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-25 Score=264.08 Aligned_cols=732 Identities=17% Similarity=0.272 Sum_probs=510.8
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh--hHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC
Q 000201 747 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 824 (1866)
Q Consensus 747 D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d 824 (1866)
.+++.+|..|-.-|.++.. ..+..++..|...+.|++. ..|.+.... |...+..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~--------------------LKN~L~a 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQ--------------------LKNSLTA 67 (859)
T ss_pred CCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHH--------------------Hhhhhcc
Confidence 4578899999988888764 3455666666666655543 234222211 1233344
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHhc
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDAL 903 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-~g~~~~~~l~~~L~~~L 903 (1866)
++++.+....+-.-.+-. + .-+++-..++..|..+.|..+..|..+++.++.. ++...++++++.|...+
T Consensus 68 kd~~~k~~~~qRWl~l~~------e---~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 KDPERKQQYQQRWLQLPA------E---IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred CCHHHHHHHHHHHHcCCH------H---HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 444554443222111111 1 1234556677888889999999999999999984 55568999999999988
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHH--HHH
Q 000201 904 KSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYL--QQV 975 (1866)
Q Consensus 904 ~~~~~~~~R~~a~~~L~~l~~~~g~~~l----~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~i 975 (1866)
.++....++..+++++|-++....++.+ ..++..++...+. ++..+|-++..++-.--...+..|..-. +.+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 8776666889999999999999988744 4566777776654 4789999888887765555554443222 235
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc---h-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 976 LPAILDGLADENESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 976 l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~---i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
+......-..++.+|+.+|+.++..|+..|.+.. + +.+.+-....+++++..|...+++....+...
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE--------- 289 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE--------- 289 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---------
Confidence 5666666677889999999999999998776542 1 11444444556677777777777766654310
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l 1131 (1866)
+.+ +.-..|+. .+ .+..+.- ..++ ...++.++|.+++.+.+.=
T Consensus 290 --------EiD-------~~~e~~e~-~d----------~~~~p~~--------~~fa---~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 290 --------EID-------LAIEYGEA-VD----------QGLPPSS--------KYFA---RQALQDVVPVLLELLTKQD 332 (859)
T ss_pred --------HHH-------HHHHHHHH-hh----------cCCCchh--------hHHH---HHHHhHhhHHHHHHHHhCC
Confidence 000 00000100 00 0000000 0001 1223345666666665432
Q ss_pred c---CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1132 A---SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1132 ~---~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
. +.+|..-.+|..||.-+.+..++.++|.++|++.+.++.++|.-|..+..+++.++..-.+..+.+...+.+|.+.
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 2 3467889999999999999999999999999999999999999999999999999987777788999999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccc
Q 000201 1209 TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 1288 (1866)
Q Consensus 1209 ~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~ 1288 (1866)
..++|+.--||+.++.+|+.+++........+
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~------------------------------------------------ 444 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQ------------------------------------------------ 444 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhchhhcccH------------------------------------------------
Confidence 99999999999999999988876432110000
Q ss_pred hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHH
Q 000201 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 1368 (1866)
Q Consensus 1289 ~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~ 1368 (1866)
-++ ..+++.++.++.|+ |++-.+
T Consensus 445 ------------------~~l--------------------------------------~~~l~~l~~gL~De-Prva~N 467 (859)
T KOG1241|consen 445 ------------------ELL--------------------------------------QSKLSALLEGLNDE-PRVASN 467 (859)
T ss_pred ------------------hhh--------------------------------------hHHHHHHHHHhhhC-chHHHH
Confidence 011 22233334444443 555566
Q ss_pred HHHHHHHHHhh---------ccchhhhhHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHhcCCcchhhhhHHHH---
Q 000201 1369 SAYLIGYFYKN---------SKLYLVDEAPNMISTLIVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVI--- 1433 (1866)
Q Consensus 1369 a~~~l~~l~~~---------~~~~~~~~~~~il~~L~~ll~d---~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l--- 1433 (1866)
+|+++-.+.+. .+....++++.++..|+..-+- .+.+.|.+|++||..+++..++++.+.+....
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 66666655431 1223447889999999987663 45689999999999999999998776544432
Q ss_pred ----HHHHh----hhhhhhhhhhcCCc--------cccCCcCCCCCccccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhh
Q 000201 1434 ----RDAIS----TSRDKERRKKKGGP--------ILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEV 1496 (1866)
Q Consensus 1434 ----~~~l~----~~~~~~~~~~~~~~--------~~l~g~~~~~~l~~ilp~l~~~L~~-~~~~~r~~a~~~L~~l~~~ 1496 (1866)
.+.++ +..++......++. ....|...+.....++..|++.+.+ .+..+.+.|..+++.++..
T Consensus 548 l~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 548 LEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 23333 11111111111111 0011223345556688888888877 4556778899999999999
Q ss_pred cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 000201 1497 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALAL 1574 (1866)
Q Consensus 1497 ~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aL 1574 (1866)
. +..|..|++.+.|-|.+.++...+.+|..++....|.+.+.++..+.||...+...++++|+++ +++|+-....++
T Consensus 628 L-g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~F 706 (859)
T KOG1241|consen 628 L-GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVF 706 (859)
T ss_pred H-hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHH
Confidence 9 7789999999999999999766678899999999999999999999999999999999999998 899999999999
Q ss_pred HHH-HhccCChhhHHHHHHHHhcc-----CC----------hhHHHHHHHHHHHHHHhcCc----cccHHHHHHHHHHHH
Q 000201 1575 GKL-SALSTRVDPLVGDLLSSLQV-----SD----------AGIREAILTALKGVLKHAGK----SVSSAVKIRVYSVLK 1634 (1866)
Q Consensus 1575 g~L-~~~~~~~~~~l~~L~~~l~~-----~~----------~~vr~~~l~aL~~vi~~~~~----~l~~~~~~~i~~~L~ 1634 (1866)
|.+ ..++.++++|+..++..++. ++ .++|+++++|...++...+. ....++...|+.++.
T Consensus 707 gDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 707 GDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 999 57888999999888777643 11 58899999999999987763 245689999999998
Q ss_pred HhhcCC--CHHHHHHHHHHHHHHHhhcChhH
Q 000201 1635 DLVYHD--DDHVRVSAASILGIMSQCMEDGQ 1663 (1866)
Q Consensus 1635 ~~l~~~--~~~vr~~aa~~l~~L~~~~~~~~ 1663 (1866)
..-.++ ++.+-..++++||.|+..+|.+.
T Consensus 787 ~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~ 817 (859)
T KOG1241|consen 787 RIAAEPDVSEALHAAALGLIGDLATMFGKGV 817 (859)
T ss_pred HHhcCcccchHHHHHHHHHHHHHHHHcccch
Confidence 865544 47788899999999999998644
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-25 Score=279.24 Aligned_cols=619 Identities=17% Similarity=0.225 Sum_probs=446.4
Q ss_pred cchHHHHhcccCCCCccchhhHHHHHHHHHHhhch-hhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000201 1159 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 1237 (1866)
Q Consensus 1159 ~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~ 1237 (1866)
..+...+...+.++++..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+.+|-+++-.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34556677778899999999999999999988873 23445678888999999999999999999999998887766666
Q ss_pred HhhHHHHHHHhccCCC---------------------chhHHHHHHHHHhhccccccchhhhhhhhcCCc-------cch
Q 000201 1238 IDEIVPTLLHALEDDQ---------------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-------SAF 1289 (1866)
Q Consensus 1238 ~~~ilp~Ll~~L~~~~---------------------~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~-------~~~ 1289 (1866)
-..++..|++.|..+. .+++-+..++++++..++.--|.++.++.+-.. +-.
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccc
Confidence 7778888888773321 124578899999999999999999998764221 112
Q ss_pred hHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhc---cchhcHHHHHHHHHhccCCCchhHH
Q 000201 1290 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASIR 1366 (1866)
Q Consensus 1290 ~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~---~~~~~~~~ll~~L~~~l~~~~~~vR 1366 (1866)
.+..++.|++-+|..+.||+++++|.|+.+-.|++..++.++...|+.++.- +-+.++++++..|+..+.+..|++|
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 3566789999999999999999999999999999999999999999999863 3457899999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-chhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhh
Q 000201 1367 RSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1367 ~~a~~~l~~l~~~~~-~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
.++|.++..+.+..+ .++.+.++.++..+++.++|..+.||++|-.+...+.+-.-+ +.+ .+
T Consensus 1057 easclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr---------~~d---~~----- 1119 (1702)
T KOG0915|consen 1057 EASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVR---------ICD---VT----- 1119 (1702)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hcc---cC-----
Confidence 999999999987654 567889999999999999999999999987766655442211 000 00
Q ss_pred hhhcCCccccCCcCCCCCccccHHHHH-HhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHH
Q 000201 1446 RKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 1524 (1866)
Q Consensus 1446 ~~~~~~~~~l~g~~~~~~l~~ilp~l~-~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~ 1524 (1866)
.|-...+.++.++|.++ +|+++..+++|..++.++.++++.. +..++||.+.+++.|++..+.-.+.-
T Consensus 1120 ----------~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss-g~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1120 ----------NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS-GKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred ----------CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc-hhhhcchhhHHHHHHHHHccccchHH
Confidence 01111134567889888 7888888999999999999999988 67999999999999999988754444
Q ss_pred HHHHHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCC-h
Q 000201 1525 VKSAILSTLSIIIRKGGI---ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD-A 1600 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~~---~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~-~ 1600 (1866)
....++.+.+.=...+.. .... -.+++.++-+|++.-+. ..+..++|.+.+.++.+- -
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~ak-sspmmeTi~~ci~~iD~-----------------~vLeelip~l~el~R~sVgl 1250 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAK-SSPMMETINKCINYIDI-----------------SVLEELIPRLTELVRGSVGL 1250 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhc-CCcHHHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHhccCCC
Confidence 444444442211111100 0000 01123333333322221 234567788888877542 4
Q ss_pred hHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCc
Q 000201 1601 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680 (1866)
Q Consensus 1601 ~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~ 1680 (1866)
+.|..+...+..++...|..+. ||..+++..+...+.+.++.+|...+.+.|.|++.-.++....+++.++.+...+..
T Consensus 1251 ~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~e 1329 (1702)
T KOG0915|consen 1251 GTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDE 1329 (1702)
T ss_pred CcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCC
Confidence 5577777888888889999998 899999999999999999999999999999999999888888888887775544433
Q ss_pred chhhhHHHHHHHHHhhCCCccc--------------------CCc-------------------chHHHHHHH-HhhhcC
Q 000201 1681 AARHGSVLVFATFLRHNPSAIS--------------------MSP-------------------LFLSILDRL-KSSLKD 1720 (1866)
Q Consensus 1681 ~~r~~~~~~L~~~l~~~p~~~~--------------------~~~-------------------~~~~~~~~l-~~~~~~ 1720 (1866)
..+..++-++..+.+++++.+. ..+ +..+++..+ ....++
T Consensus 1330 s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn 1409 (1702)
T KOG0915|consen 1330 SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNN 1409 (1702)
T ss_pred CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccc
Confidence 3232222222214443332210 001 122333333 344555
Q ss_pred CChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHH
Q 000201 1721 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800 (1866)
Q Consensus 1721 ~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~ 1800 (1866)
+.+-+|..++.++..........-| ..++..+......++++..++.++--+.++......+...+...++.+.-+++
T Consensus 1410 ~~w~lr~q~Akai~~~a~~~sss~~--~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~ 1487 (1702)
T KOG0915|consen 1410 ESWKLRKQAAKAIRVIAEGLSSSAP--IPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVM 1487 (1702)
T ss_pred hHHHHHHHHHHHHHHHcccccccCC--hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHH
Confidence 5688898888888877665544322 25777888889999999999999999999998877776666666667766777
Q ss_pred hhhccCcchhhhhHHHHHHHhhcccc
Q 000201 1801 ECLKDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1801 ~~~~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
.++.+.+...|--+..+....+....
T Consensus 1488 ~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1488 EEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 77665554444434444444444443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-20 Score=248.16 Aligned_cols=1351 Identities=16% Similarity=0.135 Sum_probs=698.7
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCC-Cc-------hHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 439 (1866)
.++.|+..|.+.+...|..|+.+|..+..... |. ..+.+..|+...... ... ..-++..+..+|.
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--sk~-----d~~L~~~Av~AL~ 172 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--NKQ-----DKVVEGLLTGALR 172 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--chh-----hHHHHHHHHHHHH
Confidence 34667888888899999999999988863221 11 123344454433210 000 0124455677888
Q ss_pred HhhhhcCCCChHH-----HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhc--ccc--hhhhHHHHHHhhcCCCCChhhh
Q 000201 440 SAADVLRTKDLPV-----IMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDN--VSLLFPIFENYLNKKASDEEKY 510 (1866)
Q Consensus 440 ~~~~~~~~~~~~~-----~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g--~~~--~~~ll~~le~~L~~~~~~~~~~ 510 (1866)
+++.+-+.- ... ..+.++ ..+.+.++.++..+..+........+ ... -...+|.|-++|.+.. +
T Consensus 173 nLs~~~en~-~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~-----~ 245 (2102)
T PLN03200 173 NLCGSTDGF-WSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN-----E 245 (2102)
T ss_pred HHhcCccch-HHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC-----C
Confidence 887643321 111 222232 34467788888887765443332211 110 1244566667765422 1
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcch--HHHHHHHHHhcCCCcHH---------HHHHHHhhhhhhhHhhhhhhHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRL 579 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~~~~~--~~l~~~l~~~l~~~~~~---------v~~~~~~~l~~lv~~~~~~~~~~l~~l 579 (1866)
..+|+.|+-+|+.|+.+=......+ ...++.+++.+..++.+ +++.+.-++..+.... ...++.+
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L 321 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYL 321 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHH
Confidence 4689999999999996411100001 13466677777666533 3555555565554332 2333333
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHhhhCc--c---hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh--CcCch
Q 000201 580 LDQLMKSDKYGERRGAAFGLAGVVKGFGI--S---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFE 652 (1866)
Q Consensus 580 l~~L~~~~~~~~R~~A~~~L~~l~~~~g~--~---~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l--~~~~~ 652 (1866)
-+.+....+...--.+..+++.++..... + .+....+.+.|.+.+.++++....+.+..++..+.... .+.+.
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~ 401 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLN 401 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Confidence 33332222333333445556555443221 1 12223456788888887665443444444443322110 01010
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
-....+.|..++...+..++..+.+++..++..-... .+ ...+|.|++.|.+++...|..++..|+.++.+..+
T Consensus 402 --~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 402 --HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred --hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 1245677888888888999999999999988642221 11 44789999999999999999999999999987654
Q ss_pred hHH-hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-h-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccc
Q 000201 729 QLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF 802 (1866)
Q Consensus 729 ~~~-~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~ 802 (1866)
+.. -.-...+|.|.++|..+++++|+.|+|+|.+++..-.+ . .+ ...+|.|++.+.+.+...+ .++.+|.....
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 321 11247899999999999999999999999999873211 1 23 3578889999988876665 46666655322
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh---hHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP---YIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~---~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
.. + ...++.+...+...++.++..+.+.++++...... .+... -....++.|.+++.+++..+++.|+.+
T Consensus 560 ~~--d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 560 TA--D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASV 632 (2102)
T ss_pred cc--c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1 12346666778888889999999999999774433 22111 023578999999999999999999999
Q ss_pred HHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-H-HHHHHHHHHHhccCChhHH
Q 000201 880 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-F-EHILPDIIRNCSHQRASVR 950 (1866)
Q Consensus 880 L~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l-~~ll~~l~~~l~~~~~~vR 950 (1866)
|..++..-.+. ...+.+|.++..+.+.+ ..++..++++|+.+......+ + . ...+|.+.+.+.+.+..++
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 99998743321 23356778888887654 448899999999988743322 1 1 3468889999999999999
Q ss_pred hHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc-h------hchHHhHhcccCC
Q 000201 951 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFN 1023 (1866)
Q Consensus 951 ~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~-i------~~llp~l~~~l~d 1023 (1866)
+.++.++..++......-+-.-...++++...+.+.++++|+.|..++..+....+... + .-.+..+.+.+..
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 99999999998766432111224578999999999999999999999998887665332 1 1133444444444
Q ss_pred CchHHHH--HHHHHHHHHHHHhcCC-cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHH
Q 000201 1024 DNWRIRQ--SSVELLGDLLFKVAGT-SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1100 (1866)
Q Consensus 1024 ~~w~vR~--~s~~ll~~ll~~~~~~-~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~ 1100 (1866)
.+-+.-. .+++.+..+.+.-.+. ..+.. ...+.+.-+ -+..|..++.+.++.+...
T Consensus 792 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~---------------~~~~~e~p~------~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 792 TDLDSSATSEALEALALLARTKGGANFSHPP---------------WAVLAEVPS------SLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred CCcchhhHHHHHHHHHHHHhhcccCCCCCCc---------------hhhHHhccC------chHHHHHHHHcCChHHHHH
Confidence 4444322 3556666554421110 00000 011122111 2344445667788889999
Q ss_pred HHHHHHHHhhcChhhHHHhH---HHHHHHHHHh-hcCCCHHHH---------------HHHHHHHH------HHHHHh--
Q 000201 1101 ALHVWKTIVANTPKTLKEIM---PVLMNTLISS-LASSSSERR---------------QVAGRALG------ELVRKL-- 1153 (1866)
Q Consensus 1101 A~~~l~~l~~~~p~~l~~~l---~~l~~~L~~~-l~~~~~~~R---------------~~A~~~L~------~lv~~~-- 1153 (1866)
|++++..++...|..+.+++ +..+..+..+ +++++.++| +....+|. .++..+
T Consensus 851 ai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (2102)
T PLN03200 851 AIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVD 930 (2102)
T ss_pred HHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999887765444433 2222222222 223333332 22222221 111111
Q ss_pred --cc---------ccc---------------------------cchHHHHhcccCCCCccch-----hhHHHHHHHHHHh
Q 000201 1154 --GE---------RVL---------------------------PSIIPILSRGLKDPSASRR-----QGVCIGLSEVMAS 1190 (1866)
Q Consensus 1154 --~~---------~~l---------------------------~~llp~L~~~L~d~~~~vr-----~~a~~~L~~li~~ 1190 (1866)
.. .+. +.+-=+|...+.+.++.-| .+++.+|.+-+..
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~ 1010 (2102)
T PLN03200 931 MLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLAS 1010 (2102)
T ss_pred HHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHh
Confidence 00 000 0011111111111111111 1223333331111
Q ss_pred hc--hh-hHHhhH------------------------hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhH-----
Q 000201 1191 AG--KS-QLLSFM------------------------DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----- 1238 (1866)
Q Consensus 1191 ~~--~~-~l~~~l------------------------~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~----- 1238 (1866)
+. +. ..++-- -..+|.+-..+...+.--|.-|++++.++....+....
T Consensus 1011 ~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~ 1090 (2102)
T PLN03200 1011 YTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVAN 1090 (2102)
T ss_pred hccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhc
Confidence 11 00 000000 11112222222222222233444444433221110000
Q ss_pred hhHHHHHHHhccCC------------------CchhHHHHHHHHHhhc----cccccchhhhhhhhcCCcc-chhHHHHH
Q 000201 1239 DEIVPTLLHALEDD------------------QTSDTALDGLKQILSV----RTTAVLPHILPKLVHLPLS-AFNAHALG 1295 (1866)
Q Consensus 1239 ~~ilp~Ll~~L~~~------------------~~~~~al~~l~~il~~----~~~~ilp~Lip~L~~~~~~-~~~~~al~ 1295 (1866)
...+..++..+... +.+..+++.|-++=.. .....+|.++..|...+-+ ..+..|+.
T Consensus 1091 ~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~ 1170 (2102)
T PLN03200 1091 SGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALG 1170 (2102)
T ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHH
Confidence 00111111111110 0112233333111111 1234566666666533321 12445555
Q ss_pred HHHHHhC-CCchhh---HhhHHHHHHHhcCCC-CHHHHHHHHHHHhHhhhccchhc-----HHHHHHHHHhccCCCchhH
Q 000201 1296 ALAEVAG-PGLNFH---LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASI 1365 (1866)
Q Consensus 1296 ~La~~~g-~~l~~~---l~~il~~L~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~-----~~~ll~~L~~~l~~~~~~v 1365 (1866)
.|-..+. ..-++. -...++.|...+... .......+.+.+..+. .+++. -...++.|...++.++...
T Consensus 1171 kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~--~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~a 1248 (2102)
T PLN03200 1171 LLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILF--SSPELRRHESAFGAVNQLVAVLRLGSRSA 1248 (2102)
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHh--CCHHHHHHhhhhhHHHHHHHHHhcCCHHH
Confidence 4444331 111110 012233333322211 1112333334444332 22211 2345677777788888999
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcch-hh-----hhHHHHHHHHhh
Q 000201 1366 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV-QP-----SYIKVIRDAIST 1439 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~-l~-----~l~~~l~~~l~~ 1439 (1866)
|.+++.++..++......-.....+.++.|..++..........++++|-.+++...... .- ..+..+.+.+..
T Consensus 1249 R~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~ 1328 (2102)
T PLN03200 1249 RYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSS 1328 (2102)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhccc
Confidence 999999999987653211111223455556666665555666666666666665432110 00 111111111111
Q ss_pred hhhhhhhhhcCCc-cccCCc--CCCCCc-cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHH
Q 000201 1440 SRDKERRKKKGGP-ILIPGF--CLPKAL-QPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLI 1514 (1866)
Q Consensus 1440 ~~~~~~~~~~~~~-~~l~g~--~~~~~l-~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~-~~l~~~v~~i~~~Li 1514 (1866)
..........-.. ..+.+- .-.+.. ...++.|++.+.++....++.++..|..++....+ +.+..| ...-|++
T Consensus 1329 ~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h--~a~vplV 1406 (2102)
T PLN03200 1329 DSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAH--GAVVPLV 1406 (2102)
T ss_pred ccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHc--CChhhHH
Confidence 1000000000000 000000 000000 12567777777776666678888888888764321 112122 1222333
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---hc--cCChhhHH
Q 000201 1515 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLS---AL--STRVDPLV 1588 (1866)
Q Consensus 1515 ~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l-p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~---~~--~~~~~~~l 1588 (1866)
..+.. .+......++.+|..++..-+.....++ --.+..++-.|+......+..|+..|.-+- .+ ++...+.+
T Consensus 1407 ~~ilr-vS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~ 1485 (2102)
T PLN03200 1407 GLVVG-TNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVV 1485 (2102)
T ss_pred HHHHc-CCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhh
Confidence 33322 3566677788888777622111111111 112333444555667888888888876552 12 23344455
Q ss_pred HHHHHHhccCC--hhHHHHHHHHHHHHHHhcCccccH-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH--
Q 000201 1589 GDLLSSLQVSD--AGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ-- 1663 (1866)
Q Consensus 1589 ~~L~~~l~~~~--~~vr~~~l~aL~~vi~~~~~~l~~-~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~-- 1663 (1866)
..++-.+-.++ ...+.+++++|-.++.+....-.. -....++..|...+.+++..+++.++++++.+.....-..
T Consensus 1486 ~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~ 1565 (2102)
T PLN03200 1486 EPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDI 1565 (2102)
T ss_pred HHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhh
Confidence 55554444333 455888999999998875432110 1134566777778899999999999999998764321110
Q ss_pred H-HHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCCh----hHHHHHHHHhHHHHh
Q 000201 1664 L-ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF----PLREASTKALGRLLL 1738 (1866)
Q Consensus 1664 ~-~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~----~~r~~a~~alg~ll~ 1738 (1866)
. ...+..++..........++.++.+|..+-..=|..+....-..++...+. +.+| ..-..|...+..++.
T Consensus 1566 ~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~----~~d~~~~~~l~~~a~~vl~n~~~ 1641 (2102)
T PLN03200 1566 TTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVIL----QADPQPPHALWESAASVLSNILR 1641 (2102)
T ss_pred hcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHH----ccCCCCchhhHHHHHHHHHHHhc
Confidence 0 111222333334444455666666663332222222222222222222222 2232 344555555555544
Q ss_pred hhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000201 1739 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 1782 (1866)
Q Consensus 1739 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~ 1782 (1866)
......+ .=-+..+++.+++.+-.++..++.++-.++.
T Consensus 1642 ~~~~~~~------~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~ 1679 (2102)
T PLN03200 1642 FSSEYYF------EVPVAVLVKLLRSTSESTVVVALNALLVLER 1679 (2102)
T ss_pred cCceeEE------EeeHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3322111 1134445555556666666666666665554
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-20 Score=233.87 Aligned_cols=793 Identities=17% Similarity=0.214 Sum_probs=503.9
Q ss_pred HHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHH
Q 000201 637 LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 637 l~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a 715 (1866)
+.++-......++.+..+..+.+-.+...+.+.+...|..+................ ..+...+...+..+....+++.
T Consensus 556 l~~~~~~~s~~pE~~~~~~~~~~~~~~sll~~~~~~mr~~~a~~y~~~~~~~~~~e~~~~l~~~i~~~~~~~~le~~hg~ 635 (1702)
T KOG0915|consen 556 LECLYTVVSYAPEMVALKFSDKIEWLRSLLSNTSESMRESVAQLYGMASCALSDAESCSELSNLISNILQPKKLEAQHGG 635 (1702)
T ss_pred HHHHHHHHhhhhHHhhHhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhccccccchhhhe
Confidence 333333444455566666677777788889999999999998888877766655544 4455544555555666777777
Q ss_pred HHHHHHHHhhCh----hhHHhhhcchhHHHhhhccCCC--hHHHHHHHHHHHHHHhhcc------------------chh
Q 000201 716 VQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTH--PKVQSAGQTALQQVGSVIK------------------NPE 771 (1866)
Q Consensus 716 ~~~L~~l~~~~~----~~~~~~l~~iv~~l~~~L~D~~--~~VR~aA~~aL~~l~~~i~------------------~~~ 771 (1866)
+..+|-...++- ......=...+|.+.+..++-. +-+..++..++..+.+.-. .+.
T Consensus 636 l~~~g~~~~~~la~~~t~~~~i~~~a~~~~v~~v~~le~a~~l~s~~~~~~~~id~~~~i~~~~~~~~~~~~~~~~~~~~ 715 (1702)
T KOG0915|consen 636 LLAVGFTSARCLARIKTVSKAITQIALPYLVNVVNSLEEAPLLASAAVEALSHIDKTGAIPNLVADSSLGTQVREDSQER 715 (1702)
T ss_pred eeeeecccccchhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHhhhccccccchhHhhhcccccccCCCccc
Confidence 766664443321 0000000123344444444221 2466666666665554211 010
Q ss_pred H------H--hHHHHHHHhhCCCCh--hHH-HHHHH------------------------------------HHhc----
Q 000201 772 I------A--SLVPTLLMGLTDPND--HTK-YSLDI------------------------------------LLQT---- 800 (1866)
Q Consensus 772 i------~--~lv~~L~~~l~d~~~--~vr-~al~~------------------------------------L~~~---- 800 (1866)
. . ..+..++..+.++.. ..+ .++.. +..+
T Consensus 716 ~sk~~s~~kv~~~glll~~i~s~~~~~~~~e~~l~yl~~g~g~~~~~~l~~~~l~~s~~~k~~~l~~~i~e~~~~~~~~~ 795 (1702)
T KOG0915|consen 716 LSKLLSGDKVQKFGLLLQHICSSKASSKILEIALGYLFSGSGDKAEEILFAAGLALSFLWKQVPLTFDIGEAINYTALGT 795 (1702)
T ss_pred cccccccchhhhHHHHHhhhcChhhhhhHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhccc
Confidence 0 0 123333333333211 000 01000 0000
Q ss_pred --cccc--------cCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 801 --TFVN--------TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 801 --~~~~--------~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.+.. .........+...+.+++.+.++..|.+.|-++-.+...++..+......+.|...+..+|.|.+.
T Consensus 796 ds~~le~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dE 875 (1702)
T KOG0915|consen 796 DSNFLEEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDE 875 (1702)
T ss_pred chhhcccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHH
Confidence 0000 011123345666777888899999999999999999998887777788888999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHH---------------------HHHHHHHHHHHHHHHhChh
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV---------------------ERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~---------------------~R~~a~~~L~~l~~~~g~~ 929 (1866)
-++..|.+.+|-+.+--+...-..++..|++++...+... -...+.+.|-.++..+|.
T Consensus 876 f~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q- 954 (1702)
T KOG0915|consen 876 FSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ- 954 (1702)
T ss_pred HHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-
Confidence 9999999999988875444455678888887775422100 001112223333333332
Q ss_pred HHHHHHHHHHHHhccC-ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 930 YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+.++-.+++..++. .|.-|.|+...|+.++...|...+||+.+++|.++++-.||+..|+.+...-+..++..-
T Consensus 955 --PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--- 1029 (1702)
T KOG0915|consen 955 --PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS--- 1029 (1702)
T ss_pred --hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh---
Confidence 45667777777765 799999999999999999999999999999999999999999999876554444433210
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
+..+ ++++++++..|..
T Consensus 1030 -----------------------------------------------------------k~~v----d~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 1030 -----------------------------------------------------------KKVV----DEYLNEILDELLV 1046 (1702)
T ss_pred -----------------------------------------------------------HHHH----HHHHHHHHHHHHH
Confidence 0001 1355566666666
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHH---HHHHHHHHHhcc--------c
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAG---RALGELVRKLGE--------R 1156 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~---~~L~~lv~~~~~--------~ 1156 (1866)
.+.+..|.||++++-++..+....| ..+.+.+|.++..+++.+.|-.+.+|.+|- .+|+.++....+ .
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 6777778888888888888877655 346778899999999988888889998864 455666555433 2
Q ss_pred cccchHHHHhc-ccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHH-HHHHHHHHHHHhc
Q 000201 1157 VLPSIIPILSR-GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES-AGLAFSTLFKSAG 1234 (1866)
Q Consensus 1157 ~l~~llp~L~~-~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~-A~~al~~l~~~~g 1234 (1866)
++..++|.+.. ++-+..+++|..++..+..+....+ ..+.||.++++|.+......-++.|-.. ++++.+.-.+
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e--- 1202 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETE--- 1202 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHH---
Confidence 57788898754 5557788899999999988876654 5789999999999999887766655332 2222111111
Q ss_pred hhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcC-------CccchhHHHHHHHHHHhCCCchh
Q 000201 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-------PLSAFNAHALGALAEVAGPGLNF 1307 (1866)
Q Consensus 1235 ~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~-------~~~~~~~~al~~La~~~g~~l~~ 1307 (1866)
++|. +-... ..+...++++..++......++..++|.+..- +.+...+..+..|+...|..+.|
T Consensus 1203 --alDt----~R~s~---aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1203 --ALDT----LRASA---AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred --HHHH----HHHhh---hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 1110 00000 00011222333333333334444455544321 12234466777888889999999
Q ss_pred hHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhh
Q 000201 1308 HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 1387 (1866)
Q Consensus 1308 ~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~ 1387 (1866)
|...++..++..++|.++.+|.....+++.++..-.++....++..+...+-.+....+..+|..+..+..+....+..|
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~ 1353 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNY 1353 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999876777777888877777655555555777777777888888889999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcC--CCCCcc
Q 000201 1388 APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQ 1465 (1866)
Q Consensus 1388 ~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--~~~~l~ 1465 (1866)
...+++..+-...+.+.+....--+.| .+. ++|-. .+-+..
T Consensus 1354 asaILPLiFLa~~ee~Ka~q~Lw~dvW-------------------~e~------------------vsggagtvrl~~~ 1396 (1702)
T KOG0915|consen 1354 ASAILPLIFLAMHEEEKANQELWNDVW-------------------AEL------------------VSGGAGTVRLYLL 1396 (1702)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHh------------------CCCCcchhhhhHH
Confidence 999999887766544221111000000 000 11100 011222
Q ss_pred ccHHH-HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 000201 1466 PLLPI-FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544 (1866)
Q Consensus 1466 ~ilp~-l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~ 1544 (1866)
.++-. +.....+..+..|.+++.++..++.......-.|++..+...+...+..+ .|+-+...+.++...+.++...+
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~~~~v 1475 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAGLADV 1475 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHhHHHH
Confidence 33333 33444455689999999999999987754444577888888888888877 67788888888876666554433
Q ss_pred CCchH
Q 000201 1545 KPFLP 1549 (1866)
Q Consensus 1545 ~~~lp 1549 (1866)
..-.|
T Consensus 1476 ~~~~~ 1480 (1702)
T KOG0915|consen 1476 KRNMS 1480 (1702)
T ss_pred HHhch
Confidence 33334
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=220.90 Aligned_cols=665 Identities=18% Similarity=0.241 Sum_probs=445.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhccc-chhhhHHHHH-HhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC-CcchHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFE-NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 539 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~-~~~~ll~~le-~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~ 539 (1866)
.+..+..|...+..++.--..+|.. -.+.++|++- ..|+ |.-|+..+..+.+|.-.++.. .|++..|+
T Consensus 373 KNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe---------DqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 373 KNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE---------DQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred cCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc---------chhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 4566677777776666544555554 3456666432 2221 456777888887777555543 35555444
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
..+-..+-+++...+..--+.+..+++..+ +...+..+=..+ .+.+.-+|...+.+++.++..+|... ++||
T Consensus 444 vViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgip~-----llpf 515 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGIPA-----LLPF 515 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCcHH-----HHHH
Confidence 433344445554444444444555555433 111111111111 23456799999999999999988554 5899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 696 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~l 696 (1866)
|.....++++|..|+.++.+...++...|...-||+..++.++-.++.|.+..||..++.++..+++..+++++ ..+
T Consensus 516 Lkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 516 LKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999998775 678
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-ch-hH-
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP-EI- 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~-~i- 772 (1866)
+..|.++.....-..=.+-+.++|.++.........++ .+++-.+..-.+.++.+.++...+.+.+++...+ +| ++
T Consensus 596 lkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r 675 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR 675 (1172)
T ss_pred HHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh
Confidence 88888877544333223333444444333222222222 2455556666777777888888888877775443 22 22
Q ss_pred HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 773 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
.+++|.+...... -|.|++ -++ -+...+.-..+|..++.
T Consensus 676 ~dilp~ff~~fw~----rrmA~d----------------------------rr~---ykqlv~ttv~ia~KvG~------ 714 (1172)
T KOG0213|consen 676 FDILPEFFFSFWG----RRMALD----------------------------RRN---YKQLVDTTVEIAAKVGS------ 714 (1172)
T ss_pred hhhhHHHHhhhhh----hhhhcc----------------------------ccc---hhhHHHHHHHHHHHhCc------
Confidence 3445544433211 000100 000 11122233344444444
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhC
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 927 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-----~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g 927 (1866)
..++..+..-+.|..+.-|...+.++..+...+|... -+.++..++..++.++.. -.-.+.+++.++.++|
T Consensus 715 --~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 715 --DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DSVMLLGFGTVVNALG 790 (1172)
T ss_pred --hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hhhhhhhHHHHHHHHh
Confidence 2355555666778888889988988888888877542 234666666666654432 1245678899999998
Q ss_pred hh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch----hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 000201 928 TV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV----QFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 928 ~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~----~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
.. ++..+...++..++++.+.+|..+..+++.++..+.. ..-.|+.. .+..++..++++|--..+.|+..
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv---vLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV---VLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH---HHHHhcCcccHHHHHHHHHHHHH
Confidence 74 7788888888899999999999999999998876643 23344444 47889999999999999999999
Q ss_pred HHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhch
Q 000201 1001 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1076 (1866)
Q Consensus 1001 i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~ 1076 (1866)
|++..+-. .+..++|.+.-.+.+...++...++.++|.+...-+ +..+.
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp---------------------------E~v~a 920 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP---------------------------EYVSA 920 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc---------------------------ccCCH
Confidence 98876433 356688888888889999999999999998753211 01111
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1077 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1077 ~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
..+-++.-.|...+...+..+|++|...++.++...+. .+++. .|+..|...+-..|....-+++-+.+.+++.
T Consensus 921 REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLa----tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 921 REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLA----TLLNNLKVQERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHH----HHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence 22234444444455666788999999999999986553 23344 4444555555555655555555555555542
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
.++|.+..-...++.++..+++.+++-++...+ +.-..|+-.+.|.+..++.|.|+.-|+.|..++..+
T Consensus 995 ---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 995 ---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred ---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 456777777777888999999999998887765 456789999999999999999999999888766554
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-20 Score=217.22 Aligned_cols=731 Identities=14% Similarity=0.176 Sum_probs=495.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-HHhHHHHHHhh-cCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v~~llp~L~~~-L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
+...++ ..++..+..|+.+...+..=+..++..- +..++|.+.+. |+ -+.|+--+.+|..+.+...+-...+..
T Consensus 365 i~~llL-kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe---DqerhllVkvidriLyklDdlvrpYVh 440 (1172)
T KOG0213|consen 365 IMRLLL-KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE---DQERHLLVKVIDRILYKLDDLVRPYVH 440 (1172)
T ss_pred HHHHHH-hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc---chhhhhHHHHHHHHHHhhcccchhcee
Confidence 344444 4677888899998887776666555443 36677766542 22 356888889999999988777777777
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
+|+-.+-.++-|.+...|......+.++++..+ +..++...-.-+.+.+++||........+ ..++--.+.++
T Consensus 441 kILvViepllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafav----vasalgip~ll 513 (1172)
T KOG0213|consen 441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAV----VASALGIPALL 513 (1172)
T ss_pred eeEEEeecceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHH----HHHHhCcHHHH
Confidence 777666778899999999988888888876543 33344444444455567888422221111 01122356788
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---CC
Q 000201 816 PIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---EN 891 (1866)
Q Consensus 816 p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---~~ 891 (1866)
|.|.....++ +|+-|..+..++..++..++. .+.||+..++..+.+.+.|.+..||..++.+++.+++..++ +.
T Consensus 514 pfLkavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 514 PFLKAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 8888888887 999999999999999998876 67899999999999999999999999999999999998765 47
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
|+.++..|.+.+.+.... .-..-+.++|-++.-...+ +..++|-.+..-..+++.+.+...+..+...+..-|-+
T Consensus 592 fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 888888898888765543 2334445556666555444 33567777888889999999999999999999888743
Q ss_pred hHhHHHHHHHHHHhhccC-----CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHH
Q 000201 968 FQNYLQQVLPAILDGLAD-----ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1042 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d-----~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~ 1042 (1866)
=.-.-..++|.++..... +-.+-|. ...+-..+.+.++ .+.++..+...+.|++...|.-..+++..++..
T Consensus 671 ~~y~r~dilp~ff~~fw~rrmA~drr~ykq-lv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~ 746 (1172)
T KOG0213|consen 671 PAYIRFDILPEFFFSFWGRRMALDRRNYKQ-LVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGR 746 (1172)
T ss_pred HHHHhhhhhHHHHhhhhhhhhhccccchhh-HHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHHhc
Confidence 211224567777665321 1111111 1111122232222 233445555667788888888888887777655
Q ss_pred hcCCccccc------------ccCCCCCCCcchHHHHHHHHHHhch---hhhHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000201 1043 VAGTSGKAL------------LEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1107 (1866)
Q Consensus 1043 ~~~~~~~~~------------~~~~~ed~~~~~e~~~~~l~~~lg~---~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~ 1107 (1866)
++...-.-+ +.+...++. ..-.....+...+|. .+...+++.+...++..+..||+.|+++++.
T Consensus 747 lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 747 LGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 543211000 110000000 000112334455553 3566777777788999999999999999998
Q ss_pred HhhcChhhH-HHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHH
Q 000201 1108 IVANTPKTL-KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCI 1182 (1866)
Q Consensus 1108 l~~~~p~~l-~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~ 1182 (1866)
++......- ...+..+-..|...++...+++--..+.++..++...|-. -...++|.+.-.|++....+..+.+.
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~Id 905 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCID 905 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHH
Confidence 875332211 1244555556778888889999888888888888877642 12344555555555566666666666
Q ss_pred HHHHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchh-----
Q 000201 1183 GLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD----- 1256 (1866)
Q Consensus 1183 ~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~----- 1256 (1866)
.++.+.. .+++.+ ...|-.|.=.+...|...+.++|.+|...||.+.+.+|+ .+++..|++.|+..+...
T Consensus 906 Lvg~Iad-rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP---qdVLatLlnnLkvqeRq~RvcTt 981 (1172)
T KOG0213|consen 906 LVGTIAD-RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP---QDVLATLLNNLKVQERQNRVCTT 981 (1172)
T ss_pred HHHHHHh-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH---HHHHHHHHhcchHHHHHhchhhh
Confidence 6666544 344322 223344555566777778889999999999999999999 688999999997654321
Q ss_pred HHHHHHHHHhhccccccchhhhhhhhcCCccc--hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1257 TALDGLKQILSVRTTAVLPHILPKLVHLPLSA--FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1257 ~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~--~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
.++....+.++ .-.++|.|+.....+.... ...++++.+.+..|..-..|.-.+.|.|-+.+.|.|..-|+.+..+
T Consensus 982 vaIaIVaE~c~--pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 982 VAIAIVAETCG--PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred hhhhhhhhhcC--chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 12222222222 2357788877665555433 3467888888888988889999999999999999999999999999
Q ss_pred HhHhhhccc----hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHH
Q 000201 1335 AETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410 (1866)
Q Consensus 1335 l~~l~~~~~----~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A 1410 (1866)
+.++...+. .+.+-.+++.+...+-+.+|.+.++...++..+....+. ..++..+.+-|-.+...||+.-
T Consensus 1060 I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~------~~~~~Y~~QGLFHParkVR~~y 1133 (1172)
T KOG0213|consen 1060 IKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP------QAMLKYCLQGLFHPARKVRKRY 1133 (1172)
T ss_pred HHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch------HHHHHHHHHhccCcHHHHHHHH
Confidence 999988653 345777888888888899999999988888877543221 2344444555557888999999
Q ss_pred HHHHHHHHh
Q 000201 1411 WEALSRVVA 1419 (1866)
Q Consensus 1411 ~~aL~~l~~ 1419 (1866)
|..++.+..
T Consensus 1134 w~vyn~my~ 1142 (1172)
T KOG0213|consen 1134 WTVYNSMYH 1142 (1172)
T ss_pred HHHHHhHhh
Confidence 999888754
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-17 Score=191.71 Aligned_cols=657 Identities=14% Similarity=0.174 Sum_probs=415.9
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH---
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--- 931 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l--- 931 (1866)
++-...+..+.++.|..-..|...++.++.. ++...+++++..+.....++.....++.+...+|.++....++.+
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 3455567778899999999999999999984 444578999998888887776666778888888998888777532
Q ss_pred -HHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhH--hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc
Q 000201 932 -EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQ--NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 932 -~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~--~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~ 1006 (1866)
..++-.+.....+ ++..+|-.++.++..-.......|. .-.+.+++.....-..++.++..+++-++..++..+.
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3344455544433 4788999888888764443333331 1123355556666667888999999999998887654
Q ss_pred cc---chhc-hHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHH
Q 000201 1007 TT---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1082 (1866)
Q Consensus 1007 ~~---~i~~-llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~v 1082 (1866)
+. .+.. +......++.++|.++...+++....+... +.+. ..-...+.
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE-----------------eid~----~~e~~~~p------- 305 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE-----------------EIDG----EMEDKYLP------- 305 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-----------------Hhhh----HHHHhhcc-------
Confidence 32 1111 112223445556666666555555443210 0000 00000010
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhcC---hhhHHHhHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1083 LAALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1083 l~~L~~~~~D~~~~vR~~A~~~l~~l~~~~---p~~l~~~l~~l~~~L~~~l~---~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
.. + +.+. ....++++|.++..+.+.=. +.+|....+|..||.-+.+..|+.
T Consensus 306 ---------e~-p-------------~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 306 ---------EV-P-------------AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK 362 (858)
T ss_pred ---------cC-c-------------hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence 00 0 0011 12245677888887765332 356788999999999999999999
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
++..++..+.+.++.++|..|..+..+++.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+..++...
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999998766667788999999999999999999999999999999998764331
Q ss_pred hHhhH--HHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccc-hhHHHHHHHHH----Hh---CCCch
Q 000201 1237 AIDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA-FNAHALGALAE----VA---GPGLN 1306 (1866)
Q Consensus 1237 ~~~~i--lp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~-~~~~al~~La~----~~---g~~l~ 1306 (1866)
+++- ++... ..++.++. +.|..+ ....++..++. .. .+-+.
T Consensus 443 -i~p~~Hl~~~v---------sa~liGl~-------------------D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~ 493 (858)
T COG5215 443 -ISPCGHLVLEV---------SASLIGLM-------------------DCPFRSINCSWRKENLVDHIAKAVREVESFLA 493 (858)
T ss_pred -cCccccccHHH---------HHHHhhhh-------------------ccchHHhhhHHHHHhHHHhhhhhhccccchhH
Confidence 1110 00000 01111111 111110 01111222221 11 12244
Q ss_pred hhHhhHHHHHHHhc--CCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchh
Q 000201 1307 FHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 1384 (1866)
Q Consensus 1307 ~~l~~il~~L~~~l--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~ 1384 (1866)
+++..|+..|+..- ..++...|.++.++++.++ ...+..+
T Consensus 494 ~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli--------------------------------------~~~~d~V 535 (858)
T COG5215 494 KFYLAILNALVKGTELALNESNLRVSLFSALGTLI--------------------------------------LICPDAV 535 (858)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH--------------------------------------hhcchhH
Confidence 55555555554432 2233344444444444444 3333222
Q ss_pred hhhHHHH-----------HHHHHHHhCCCC----hhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhc
Q 000201 1385 VDEAPNM-----------ISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKK 1449 (1866)
Q Consensus 1385 ~~~~~~i-----------l~~L~~ll~d~~----~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~ 1449 (1866)
.+....+ ++.+-..+.-.| .++..+-+..|..++.+.+.+.
T Consensus 536 ~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i------------------------ 591 (858)
T COG5215 536 SDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI------------------------ 591 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc------------------------
Confidence 2222111 111111111111 1233333333333333332211
Q ss_pred CCccccCCcCCCCCccccHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHH
Q 000201 1450 GGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 1528 (1866)
Q Consensus 1450 ~~~~~l~g~~~~~~l~~ilp~l~~~L~~~-~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~ 1528 (1866)
...-..++..|++.+.+. ..........+|+.+.... ++.+..|++.+.|-|.+.+.. .+..+...
T Consensus 592 -----------e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl-~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~ 658 (858)
T COG5215 592 -----------EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL-EERFEQYASKFIPYLTRALNC-TDRFVLNS 658 (858)
T ss_pred -----------ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhcc-hhHHHHHH
Confidence 011123666777776665 3345566788899988887 788999999999999999965 47789999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-HhccCChhhHHHHHHHHhcc-----CC-
Q 000201 1529 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV-----SD- 1599 (1866)
Q Consensus 1529 al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~L~~~l~~-----~~- 1599 (1866)
+...+|.|...++..+.+|...+...++++++++ +++++-....++|.+ ..++..+.+|+..++-.++. +.
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~ 738 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHS 738 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999998 789999999999999 56788899999887766543 11
Q ss_pred ---------hhHHHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhcChhHHHH
Q 000201 1600 ---------AGIREAILTALKGVLKHAGKS--VSSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLAD 1666 (1866)
Q Consensus 1600 ---------~~vr~~~l~aL~~vi~~~~~~--l~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~l~~L~~~~~~~~~~~ 1666 (1866)
..++.....|+..+....... ...||...|+..+-....|++ +..-+++.+++|.++..+|..++..
T Consensus 739 ~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~ 818 (858)
T COG5215 739 DEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKF 818 (858)
T ss_pred CceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhh
Confidence 234455555555555544422 334788888888776555553 4444678899999999999866544
Q ss_pred H
Q 000201 1667 L 1667 (1866)
Q Consensus 1667 ~ 1667 (1866)
.
T Consensus 819 ~ 819 (858)
T COG5215 819 G 819 (858)
T ss_pred c
Confidence 3
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-21 Score=225.34 Aligned_cols=520 Identities=22% Similarity=0.307 Sum_probs=376.2
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHH
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 820 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~ 820 (1866)
+...-.|.++.||..-..+...+...-+++.+..+.|..-+.++..
T Consensus 22 ~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~---------------------------------- 67 (569)
T KOG1242|consen 22 LVSAGEDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL---------------------------------- 67 (569)
T ss_pred ecccCCCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc----------------------------------
Confidence 3333378888888877777666554444444444555444443321
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
.+..+|....-..+.++..+.. .+ +-...++..+...+..|.+.+|.+...|+..+........-..+.+.+.
T Consensus 68 ----~~~~~~~~~~v~~~~~a~~~~~-~d--~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~ 140 (569)
T KOG1242|consen 68 ----HNDNLRNNVVVLEGTLAFHLQI-VD--PRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLL 140 (569)
T ss_pred ----hhHHHhhhhHHHHHHHHHhccc-cC--cchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHH
Confidence 1223444444444444443321 22 2233577788888889999999999999999988766554445555555
Q ss_pred HhcccCCCHHHHHHHHHHHHHHHHHhChhHHH--HHHHHHHHHhccC-ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFE--HILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~--~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
+.+. ......|.+++.+++.+..+.|.+.+. .++..+.....+. ....|++++.++......+|..|+||+-.++|
T Consensus 141 ~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp 219 (569)
T KOG1242|consen 141 ELLT-STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILP 219 (569)
T ss_pred HHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 5555 344568999999999999988877553 4666777777766 45566688999999999999999999999999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q 000201 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1057 (1866)
Q Consensus 978 ~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~e 1057 (1866)
.++....|..+.||.++..+...++..++..+++.++|.+...+.+..||.+.++++++|.+.+..+.
T Consensus 220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~------------ 287 (569)
T KOG1242|consen 220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK------------ 287 (569)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH------------
Confidence 99999999999999999999999999999999999999999988888999999999999988654321
Q ss_pred CCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHH
Q 000201 1058 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1137 (1866)
Q Consensus 1058 d~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~ 1137 (1866)
.+. ....++++.+...++|+..+||+++..++..+.+.... +-+..+++.++.++++++..
T Consensus 288 -----------qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 288 -----------QLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred -----------HHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccc
Confidence 011 23446777788889999999999999999888763221 12445556666777877643
Q ss_pred HHHHHHHHHH--HHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh-chhhHHhhHhhHHHHHHHhhcCC
Q 000201 1138 RRQVAGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDS 1214 (1866)
Q Consensus 1138 ~R~~A~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~ 1214 (1866)
+.. +...|+ .++..+.++.+.-++|++.+++.+.+...+..++..++.+.... .+..+.+|++.++|.+...+.|.
T Consensus 349 ~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 349 TPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred hHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC
Confidence 332 333332 34555556678889999999999999999999998888877666 57788999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCc---hhHHHHHHHHHhhccccccchhhhhhhhcC----Cc-
Q 000201 1215 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHL----PL- 1286 (1866)
Q Consensus 1215 ~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~---~~~al~~l~~il~~~~~~ilp~Lip~L~~~----~~- 1286 (1866)
.|+||..++++++.+.+..|...+++.+|.+.+.+.++.. ...+.+.+.++++.........++|.+... ..
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~ 507 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLID 507 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccch
Confidence 9999999999999999999999889999999999866543 346677777777654333333333332211 11
Q ss_pred ---cchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1287 ---SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1287 ---~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
.......+..+....|..+.+|+..+++.+.+.+.+.++..+..+.+.
T Consensus 508 ~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 508 ERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred hhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 111122333444456777889999999999988887777766555443
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-19 Score=204.50 Aligned_cols=664 Identities=17% Similarity=0.181 Sum_probs=413.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhccc-chhhhHHH-HHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC-CcchHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPI-FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 539 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~-~~~~ll~~-le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~ 539 (1866)
.+.++..|.+.+...+.---++|.. ..+.++|+ ++..|+ |.-|+..+..+.++.-.++.. .|++..++
T Consensus 178 KNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 178 KNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred ccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 4555666666666555433445544 44677775 344433 445778888887777555542 34554444
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
...-..+-+++...+..--+.+..+++..+=. -.+..+=.. .++++.-+|...+.+.+.++..+|.+ .+.|+
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpD-i~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPD-ITSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCC-cccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 43344445566555555555555555544310 001000011 13456679999999999999988743 56899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 696 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~l 696 (1866)
|..+..+.++|..|..++.+...+++.+|...-+|+..++.++-.++.|....||-.++.++..+++...++++ ..+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999988775 455
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhh-ChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~-~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
+..|.++.....-..=.+-+.+.|.+... .|+.....- .+.
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t--------------------------------------re~ 442 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT--------------------------------------REH 442 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH--------------------------------------HHH
Confidence 66565554322111111111111111100 001111111 222
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHh-ccccccCCc-chhhhHHHHHHHhhcCC-CHHHH---HHHHHHHHHHhhhcCCCcc
Q 000201 776 VPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDA-PSLALLVPIVHRGLRER-SAETK---KKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~al~~L~~-~~~~~~~~~-~~l~~l~p~L~~~l~d~-~~~vr---~~a~~~l~~l~~~l~~~~~ 849 (1866)
...+...+..|++.....+..... ...+..++. .....+.|.+...+-.+ +...| +.....-.-+++..++
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--- 519 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--- 519 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC---
Confidence 333333334443332211111111 111111111 12234555554322100 00000 0001111223333333
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-----~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
+.+...+.+.+.|+...-|..++.+...+...+|..-| +.++..++..++.+... -.-.+.+++.+..
T Consensus 520 -----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t--~~~il~~f~tv~v 592 (975)
T COG5181 520 -----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT--VGLILPCFSTVLV 592 (975)
T ss_pred -----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc--ccEEEecccceee
Confidence 34667778888898888899888888888887775422 33555555555543321 1122334444444
Q ss_pred Hh---ChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch--hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 000201 925 AL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 925 ~~---g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
++ |..++..++..++..++++.|.+|+.+..+.+.++..+.. ++ ..+..+=..+...+..++++|--..+.|+.
T Consensus 593 sl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 593 SLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred ehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 33 3447788889999999999999999999999988876541 11 233334444788999999999988999998
Q ss_pred HHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhc
Q 000201 1000 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1075 (1866)
Q Consensus 1000 ~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg 1075 (1866)
.|.....-. .+..++|.+.-.+.++..++....+.++|.+...-+ +..|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p---------------------------eyi~ 724 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP---------------------------EYIG 724 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc---------------------------ccCC
Confidence 887765444 355688888888888888998888988888753211 1112
Q ss_pred hhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1076 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1076 ~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
...+-++.-.|...+...+.++|+.|...++.++...+. +++ +..++..|...+-..|....-+++-+.+.+|+
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdv----L~~LlnnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDV----LDILLNNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHH----HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 222334444455556677889999999999999876553 233 44455556655566676666666666666665
Q ss_pred ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1156 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1156 ~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
. .++|.+..-...++.++..+++.+++-++...+ .....|+-.+.|.+..++.|.|+.-|+.|...+..+
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 3 456677776778889999999999998887765 455679999999999999999999998877655443
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-17 Score=188.39 Aligned_cols=720 Identities=15% Similarity=0.159 Sum_probs=457.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhh-cCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHh
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 742 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~-L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~ 742 (1866)
..++.....|..+...+..=+.+.++..+ ..++|.+++. |+| +.|+-.+.++..+.++..+-...+..+|+-.+.
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD---qerhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED---QERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh---hhhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 46777888888888877776666666554 7788877654 333 567888888999998877666666666666666
Q ss_pred hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 743 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 743 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
.++-|+++.+|.....-+..++...+=. ..+...-.-+.+.++++|........+ ..++--...++|.+....
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~v----va~algv~~llpfl~a~c 325 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGV----VADALGVEELLPFLEALC 325 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHH----HHHhhCcHHHHHHHHHHh
Confidence 7888999999988877776666544311 111112122334456777422221110 011223567889998888
Q ss_pred cCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---CChhhHHHH
Q 000201 823 RER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSW 898 (1866)
Q Consensus 823 ~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---~~~~~l~~~ 898 (1866)
.++ +|+-|.....+...+|..++. ...+|+..++..+.+++.|.+..||..++.+++.+++..|+ +.|+.++..
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~p 403 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCP 403 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHH
Confidence 887 999999999999999998876 56789999999999999999999999999999999998775 467888888
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch-hhHhHHH
Q 000201 899 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQ 973 (1866)
Q Consensus 899 L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l----~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~-~f~~~l~ 973 (1866)
|.+...+.... .-..-..+.|-++.-..++|. .+.+..+...+++++.+.+...+. +...|...|. .-..|..
T Consensus 404 Lw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~-v~~~C~~v~~~tp~~lr~ 481 (975)
T COG5181 404 LWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV-VERICDKVGTDTPWKLRD 481 (975)
T ss_pred HHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH-HHHHHhccCCCCHHHHHH
Confidence 88777654432 222333444555554555533 567777788888887777765443 3344444332 2122445
Q ss_pred HHHHHHHhhcc------CC--ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcC
Q 000201 974 QVLPAILDGLA------DE--NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1045 (1866)
Q Consensus 974 ~il~~ll~~l~------d~--~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~ 1045 (1866)
++.|.++...- |. +..|- .+-..+.+..+. ..+...+.+...|+....|.-...+...++..++.
T Consensus 482 ~v~pefF~~fw~rr~A~dr~~~k~v~----~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~ 554 (975)
T COG5181 482 QVSPEFFSPFWRRRSAGDRRSYKQVV----LTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGR 554 (975)
T ss_pred hhcHHhhchHHHhhhcccccccceee----hhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccc
Confidence 55555544321 10 00010 111111111111 11222333344455555555444444444433321
Q ss_pred Ccccc------------cccCCCCCCCcchHHHHH--HHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh-
Q 000201 1046 TSGKA------------LLEGGSDDEGASTEAHGR--AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA- 1110 (1866)
Q Consensus 1046 ~~~~~------------~~~~~~ed~~~~~e~~~~--~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~- 1110 (1866)
..-.- .+.+.+..+..-..-.+. .-.+..|..+...+++.+...++...+.||+.|+++.+.++.
T Consensus 555 ~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~v 634 (975)
T COG5181 555 LGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKV 634 (975)
T ss_pred ccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 10000 000000000000000000 002334455667788888888899999999999999988774
Q ss_pred --cChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHHHH
Q 000201 1111 --NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGL 1184 (1866)
Q Consensus 1111 --~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~~L 1184 (1866)
+++.+ ..+..+-..+...++...+++--..+.++..+....+-. -...++|.+...|++....+..+.+..+
T Consensus 635 lk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lv 712 (975)
T COG5181 635 LKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALV 712 (975)
T ss_pred HHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHH
Confidence 44432 345555566778888888888777777777776554422 1233444444445555666666666666
Q ss_pred HHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchh-----HH
Q 000201 1185 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD-----TA 1258 (1866)
Q Consensus 1185 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~-----~a 1258 (1866)
+.+... +++.. ...|-.|.=.+...|...+.++|.+|...||.+.+.+|+ .+++..|++.|+..+... .+
T Consensus 713 g~I~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~Rvctsva 788 (975)
T COG5181 713 GTICMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVCTSVA 788 (975)
T ss_pred HHHHhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhhhhhh
Confidence 665443 33322 223344555566777788899999999999999999999 688889999997654321 22
Q ss_pred HHHHHHHhhccccccchhhhhhhhcCCccc--hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 000201 1259 LDGLKQILSVRTTAVLPHILPKLVHLPLSA--FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 1336 (1866)
Q Consensus 1259 l~~l~~il~~~~~~ilp~Lip~L~~~~~~~--~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~ 1336 (1866)
+....+.++ .-.++|.++.....+.... ...+|+..+.+..|.+-..|.-.+.|.+-+.+.|.++.-|+.+...+.
T Consensus 789 I~iVae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 789 ISIVAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhhHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 222333332 2356777776655554332 346688888888899888999999999999999999999999999999
Q ss_pred Hhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHH
Q 000201 1337 TVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412 (1866)
Q Consensus 1337 ~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~ 1412 (1866)
+++.++.. +..-.+++.|...+-+++|.+.++...++..|....+. ..++..+.+-+-.+...||..-|.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~------g~~m~Yv~qGLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS------GAMMKYVQQGLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHHhccCchHHHHHHHHH
Confidence 99987643 44667788888888899999999999998888654332 223333444455788899999998
Q ss_pred HHHHHHh
Q 000201 1413 ALSRVVA 1419 (1866)
Q Consensus 1413 aL~~l~~ 1419 (1866)
.++.+-.
T Consensus 941 vyn~myv 947 (975)
T COG5181 941 VYNIMYV 947 (975)
T ss_pred HHhhhhh
Confidence 8877643
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=223.46 Aligned_cols=529 Identities=21% Similarity=0.262 Sum_probs=400.5
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHH-HHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhc
Q 000201 451 PVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA 529 (1866)
Q Consensus 451 ~~~~~fli~~~l~d~~~~vr~~~~~a-~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~ 529 (1866)
..+++|+- ... +.+.+|+..+..- +......+|+++...+++.+|... ..++ ..+|+++++.+..++..+.
T Consensus 120 ~~lipf~~-e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~----~~ee--t~vr~k~ve~l~~v~~~~~ 191 (759)
T KOG0211|consen 120 LELIPFLT-EAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLA----TVEE--TGVREKAVESLLKVAVGLP 191 (759)
T ss_pred hhhhhHHH-Hhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhh----HHHH--HHHHHHHHHHHHHHHHhcC
Confidence 45677774 344 8888888877554 555666888899999999999994 3343 6799999999999997766
Q ss_pred cCCcchHHHHHHHHHhcCCCcHHHHHHHHhhh-hhhhH-hhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhh
Q 000201 530 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL-SPLMQ-SMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF 606 (1866)
Q Consensus 530 ~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l-~~lv~-~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~ 606 (1866)
+.. ....+..++..+... +++++....|- ....+ ... +..+..+..++..+.+++.+.+|+.++..++.+++.+
T Consensus 192 ~~~--~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 192 KEK--LREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred hHH--HHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 644 345666666666665 58888777762 22222 222 4467788889999999999999999999999888866
Q ss_pred CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000201 607 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686 (1866)
Q Consensus 607 g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~ 686 (1866)
+.... ...++|.+.....|....||.+|.+++..+..
T Consensus 269 ~~~~~-------------------------------------------~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 269 ESEIV-------------------------------------------KSEVLPTLIQLLRDDQDSVREAAVESLVSLLD 305 (759)
T ss_pred HHHHH-------------------------------------------HhhccHHHhhhhhcchhhHHHHHHHHHHHHHH
Confidence 32111 12455666667778889999999999999988
Q ss_pred hhcHh-hH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 687 QLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 687 ~l~~~-~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
.+... .+ +.+.+.+++..++.+|++|.........+....+.+. .-+..++.....++|...++|.+...-...+.
T Consensus 306 l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 306 LLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred hcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc--CcccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 87765 44 7899999999999999999998888777776655532 23467888899999999999999999988888
Q ss_pred hhccc---hhH--HhHHHHHHHhhCCCChhHHHHHHHHHh-ccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 765 SVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 838 (1866)
Q Consensus 765 ~~i~~---~~i--~~lv~~L~~~l~d~~~~vr~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~ 838 (1866)
...+. +.+ +.++|.+.....|.+.++|.+...... ....-. .......+.|.+...+++..+.||....+.+.
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHH
Confidence 77763 222 567899999999999999965543322 111111 23456778899999999999999999777665
Q ss_pred HHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHH
Q 000201 839 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 918 (1866)
Q Consensus 839 ~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~ 918 (1866)
.+-. +.+...+..+.+..+|.+..+..|..|++|......+..++...|..++.+....+...--.+..+.+|.+++..
T Consensus 463 ~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 463 LLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred HHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4443 345456677888999999999999999999999999999999988665554333333332233445689999999
Q ss_pred HHHHHHHhChh-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHH
Q 000201 919 LSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGA 997 (1866)
Q Consensus 919 L~~l~~~~g~~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~a 997 (1866)
+..++..+|.+ ....++|.++....++++.+|.+.+.++..++..+|.++ +...++|.+.....|+.++||..+++.
T Consensus 542 l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 542 LPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred hHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 99999999955 447788888888888899999999999999999999987 788999999999999999999999999
Q ss_pred HHHHHHhhcccchhc-hHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 998 GHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 998 l~~i~~~~~~~~i~~-llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+..++..+.....+. ++|.++....|++-.+|..+....+.+
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 999998877665544 667666665565444455555555443
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-18 Score=211.91 Aligned_cols=558 Identities=21% Similarity=0.255 Sum_probs=396.8
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 665 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~ 665 (1866)
.++.+.|..+..-+..+....|.... ...++|++.+.. ++. ..+...+..-|+.+...-|. ..|...++|.+...
T Consensus 93 ~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~-dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 93 NTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDE-DEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELL 167 (759)
T ss_pred chhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cch-hHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhh
Confidence 44556777777777777777776655 467999999988 433 34555555545555443331 23445677888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh-HHHHHHHHHHHHhhChh-hHHhhhcchhHHHhh
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTE 743 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~-r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~ 743 (1866)
..+....||+.+.+.+..++..++.......+-.++..+...+|+. |..++.+++..+-..++ .+.. ++.|...+
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~ 244 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQS 244 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHh
Confidence 8899999999999999999999988777444444555555558866 55577787777776663 3333 56667788
Q ss_pred hccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 744 VLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 744 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
+++|..+.||.+++.-++.+++.+.+... ..++|.+... .
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~ 285 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------L 285 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------h
Confidence 99999999999999999999987765322 3344444444 4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLD 901 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~ 901 (1866)
.|....||..|...+.++...+.+.. +....+.+.+.+...|++|.+|.........+...+|++ ..+...+....
T Consensus 286 ~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 362 (759)
T KOG0211|consen 286 RDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSN 362 (759)
T ss_pred hcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHH
Confidence 44445666666666666666554421 344567788888888999999998888888888888875 33445666666
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHH
Q 000201 902 ALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 976 (1866)
Q Consensus 902 ~L~~~~~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il 976 (1866)
.++... ...|...+.-...+...+..+ ..+.++|.+.....+.+.++|.........+...+|. ..-++.+.
T Consensus 363 l~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~ll 439 (759)
T KOG0211|consen 363 LLKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELL 439 (759)
T ss_pred Hhcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccC
Confidence 665433 446666666666666655522 3356678888888899999998877777777767763 34566778
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000201 977 PAILDGLADENESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1052 (1866)
Q Consensus 977 ~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~ 1052 (1866)
|.....++|+.+.||.+..+.+.......... ..+.++|.+.....|.+||+|.+.++.+..++.+
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---------- 509 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---------- 509 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh----------
Confidence 88898999999999998876554433322222 2344788888888888999999999988876532
Q ss_pred cCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHHH
Q 000201 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1053 ~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~-~~D~~~~vR~~A~~~l~~l~~~~p--~~l~~~l~~l~~~L~~ 1129 (1866)
+|.+++++.+..++.. +.|....+|.+|...+..++..++ +... .+++.++.
T Consensus 510 ---------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~----~~i~k~L~ 564 (759)
T KOG0211|consen 510 ---------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL----EEIPKLLA 564 (759)
T ss_pred ---------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH----HhhHHHHH
Confidence 2334444445555543 577788999999999999998776 3333 33444444
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcccc-ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~~~-l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
...++++..|.+.+.++..++..+|..+ ..+++|.+.....|+.+++|.+++..|..++......... ..+.|.+.
T Consensus 565 ~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~ 641 (759)
T KOG0211|consen 565 MDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLE 641 (759)
T ss_pred HhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHH
Confidence 4566689999999999999999998874 5788999999999999999999999999887666543333 45666666
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1209 TALCDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1209 ~~L~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
....|++.+||..|..+++.+....-
T Consensus 642 ~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 642 TLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred HhccCcccchhHHHHHHHHHHHHHHH
Confidence 67779999999999999888755433
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=160.20 Aligned_cols=463 Identities=17% Similarity=0.197 Sum_probs=337.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHH-hcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHh
Q 000201 1127 LISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPIL-SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1201 (1866)
Q Consensus 1127 L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L-~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~ 1201 (1866)
+.+.++++-++.|.+|+.-+-.+++.+-.. ....++..+ .+...+++.+.|.|.+.+++......|.+... |+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~ 83 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLE 83 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHH
Confidence 456677888899999999998888866432 234445433 34455677788889999999887777776665 999
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhh
Q 000201 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 1281 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L 1281 (1866)
.+++.+..++.|++..||..|++.+-.+++
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK-------------------------------------------------- 113 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAK-------------------------------------------------- 113 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999998877654443
Q ss_pred hcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhcc----c-hhcHHHHHHHHHh
Q 000201 1282 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----D-EEGVESLVSELLK 1356 (1866)
Q Consensus 1282 ~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~----~-~~~~~~ll~~L~~ 1356 (1866)
++..++..|++.|...+.+...|.+..+|..+ +.++.++..+ . .-.++.++|.|-+
T Consensus 114 ------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~e 174 (675)
T KOG0212|consen 114 ------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRE 174 (675)
T ss_pred ------------------HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 22233445666677777777777777776544 3344444322 1 2248999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHH
Q 000201 1357 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 1436 (1866)
Q Consensus 1357 ~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~ 1436 (1866)
.+...++..|+..+.++..+-...+.++-.|.+.+++.|+..+.|+..+||..+-.+++.+++....+-
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P----------- 243 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP----------- 243 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 999999999999999999999889999999999999999999999999999988888888765432110
Q ss_pred HhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHH
Q 000201 1437 ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 1516 (1866)
Q Consensus 1437 l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~ 1516 (1866)
+ ++ ......+++...+.++.+..+..|..-|.+++.-. +..+-+|...++..++..
T Consensus 244 -----~--------------s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 244 -----S--------------SM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPC 299 (675)
T ss_pred -----c--------------cc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccC
Confidence 0 00 12234566666778888999999999999998765 778889999998888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCC-C--CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-----CChhhHH
Q 000201 1517 IGDRFPWQVKSAILSTLSIIIRKGGIAL-K--PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPLV 1588 (1866)
Q Consensus 1517 l~~~~~~~vr~~al~~L~~L~~~~~~~~-~--~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~-----~~~~~~l 1588 (1866)
+.+.....++..+...-+.+...++... + --+..++..+.+.+.+..++.|.++..|+-.+-.-. -+.++++
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 8876444566555555444444332211 1 112478888999999999999999999998884432 3468999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHH
Q 000201 1589 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 1668 (1866)
Q Consensus 1589 ~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l 1668 (1866)
+.|+..+.+++.++....+..+..+....... .+++-+.+ |.+.+..+.--.+..+.-++..+|..+.++.+-..+
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---~~~~fl~s-LL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNSP---NLRKFLLS-LLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCcccc---cHHHHHHH-HHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999998888765442 33333333 344444444455666778888899998888777777
Q ss_pred HHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1669 QELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1669 ~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
..++...++.++ -...+.+|+.++-.+|+-
T Consensus 456 a~ILe~e~nl~F--AstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 456 ADILEREENLKF--ASTMVQALNTILLTSTEL 485 (675)
T ss_pred HHHHhccccchH--HHHHHHHHHhhhcccHHH
Confidence 777766444333 234566888887777753
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-09 Score=135.61 Aligned_cols=791 Identities=17% Similarity=0.176 Sum_probs=428.6
Q ss_pred HHHHHHhhhhccC--CcchHHHHHHHHHhcC--CCcHHHHHHHHhhhhhhhHhhhhh------hHHHHHHHHHHHHcCCC
Q 000201 519 IFTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE------APTLVSRLLDQLMKSDK 588 (1866)
Q Consensus 519 ~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~--~~~~~v~~~~~~~l~~lv~~~~~~------~~~~l~~ll~~L~~~~~ 588 (1866)
.+|.-+..+.+.. ..++..+...+...+. +.+..|...+..||..+.....-. ....+..++.-. -++.
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~-~h~~ 151 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA-AHKK 151 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH-hcCc
Confidence 3444444444331 1223444444444443 566789999999998888764411 233333333333 3566
Q ss_pred hhHHHHHHHHHHHHHhhhC--cchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH
Q 000201 589 YGERRGAAFGLAGVVKGFG--ISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g--~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~ 664 (1866)
+.+|+.|..++..++.+.. +.... ...+..+..+.+++...+..-...+..+..|-..+...-.+.+..+...++.
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 7899999999999998542 11111 0123344455555444333333344444333334444446778889999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhh----HHhHHHHHHhhcCCC-ChhhHHHHHHHH----HHHHhhChhhHHhhhc
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQSSVQLL----GAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~----v~~llp~L~~~L~~~-~w~~r~~a~~~L----~~l~~~~~~~~~~~l~ 735 (1866)
.++..+..|+-.+.+++..+++..++.. ...++..+.+.--+. +...-.+-+.++ ..++...++.....+|
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 9999999999999999999998766522 133444444433222 111111111111 1222333444455677
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+++.++.++...++++-.++-+++..+.+.... +.+.++..
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~--------------------------------- 353 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-----VIDALCSK--------------------------------- 353 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHH---------------------------------
Confidence 8888888888888888888888888887653211 11111111
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhH
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l 895 (1866)
.+..++.-+...+-+.+.+++..+++.++. ...|++-..+..+...-.+++..-+...-.++|+.+.++|++.+-.+
T Consensus 354 -~~~~~l~~kf~~~~~~ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~ 430 (1176)
T KOG1248|consen 354 -QLHSLLDYKFHAVWRFILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTI 430 (1176)
T ss_pred -HHHHHHcchHHHHHHHHHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHH
Confidence 122333344455666777788888876665 34566666666666655566666777888999999999999876666
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHHh------ccC--Ch-hHHhHHHHHHHHhhhhh-
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNC------SHQ--RA-SVRDGYLTLFKYLPRSL- 964 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-~~ll~~l~~~l------~~~--~~-~vR~~al~~l~~L~~~~- 964 (1866)
+|.=+ ..+.....|...+-.|.+-+.+-.-.++ +.++|...+.- ... .. .++.-..++|+-|+..|
T Consensus 431 lpLnl---~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~ 507 (1176)
T KOG1248|consen 431 LPLNL---HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCN 507 (1176)
T ss_pred cchhc---cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhC
Confidence 66433 2222222454444444443333333333 44555444321 111 12 44555677888888776
Q ss_pred -chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 965 -GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 965 -g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
|.+.+.-+..+.|.+...+... ++.|...+.++..+++.-.+. .+
T Consensus 508 ~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~-------------~~-------------------- 553 (1176)
T KOG1248|consen 508 YPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPS-------------SD-------------------- 553 (1176)
T ss_pred CCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCc-------------ch--------------------
Confidence 3455555666777777666543 478887777777766532100 00
Q ss_pred cCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHH
Q 000201 1044 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1123 (1866)
Q Consensus 1044 ~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l 1123 (1866)
..+ . .+.++ .+-...++.+|..-......-| ..+...-+.+
T Consensus 554 -------------------a~e-~---~e~~s-~~AknfL~~lfn~ytq~~~~~~---------------~~l~~~~~~L 594 (1176)
T KOG1248|consen 554 -------------------AAE-N---KEVLS-NDAKNFLPRLFNVYTQTVAAGR---------------KILASRSTVL 594 (1176)
T ss_pred -------------------HHH-H---HHHHh-hhhhHHHHHHHHHhcCCCcccc---------------ccHHHHHHHH
Confidence 000 0 00000 0111233333322111100000 0000111111
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhH
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1203 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~l 1203 (1866)
.......+.....++-..-...+++++ .+.+..++..-...+-.++....+..-...+..+
T Consensus 595 ~~i~~~~~~~t~~dv~~~l~~s~~e~a-------------------s~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l 655 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDVVGSLKDSAGELA-------------------SDLDESVASFKTLSLLDLLIALAPVQTESQVSKL 655 (1176)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhHh-------------------ccchhhhhhHHHHHHHHHHHhhhccccchhHHHH
Confidence 111111111111111111111111111 1111111111111111111122222222233333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHH-hch----hhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhh
Q 000201 1204 IPTIRTALCDSILEVRESAGLAFSTLFKS-AGM----QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 1278 (1866)
Q Consensus 1204 l~~l~~~L~d~~~~vr~~A~~al~~l~~~-~g~----~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Li 1278 (1866)
....-...+..+..++..+.+.++.+... -|. ..++++...|.+.+++.
T Consensus 656 ~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-------------------------- 709 (1176)
T KOG1248|consen 656 FTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-------------------------- 709 (1176)
T ss_pred HHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 32222233444677888887777777654 111 11222222222221111
Q ss_pred hhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhh--hcc---c-h---hcHHH
Q 000201 1279 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT--LVI---D-E---EGVES 1349 (1866)
Q Consensus 1279 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~--~~~---~-~---~~~~~ 1349 (1866)
..+....+..++..|.+..+.......+..+|.++-.+++.+...|..+..++-.|. ... + + ..+++
T Consensus 710 ----~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne 785 (1176)
T KOG1248|consen 710 ----SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE 785 (1176)
T ss_pred ----chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence 111122344566666666665566677777887777778888888888888877776 322 1 1 24778
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHh-hccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYK-NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 1428 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~-~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~ 1428 (1866)
++..+..++-.+...++...+.+++.++. .....-.++++.+++.+...+....++++.+|...+..++...|...+..
T Consensus 786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 88888887766656666555666666644 33334456788999999999999999999999999999998887654332
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhh
Q 000201 1429 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 1508 (1866)
Q Consensus 1429 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~ 1508 (1866)
+...++|.++..+.......|..+-..+-.++...+.+.+++|++.
T Consensus 866 ----------------------------------~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 866 ----------------------------------HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred ----------------------------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 3334556666555555677888888889999999988888888775
Q ss_pred hh
Q 000201 1509 IT 1510 (1866)
Q Consensus 1509 i~ 1510 (1866)
-.
T Consensus 912 e~ 913 (1176)
T KOG1248|consen 912 ED 913 (1176)
T ss_pred HH
Confidence 43
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-10 Score=144.02 Aligned_cols=761 Identities=14% Similarity=0.122 Sum_probs=437.8
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCC
Q 000201 877 ARAIGSLIRGMGEE----NFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQR 946 (1866)
Q Consensus 877 ~~aL~~l~~~~g~~----~~~~l~~~L~~~L~-~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~ 946 (1866)
+.+|..+...++.. .|.++...+...+. +..+..+++.++.+|+.+.+.-+...| ...+-.+....-++.
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~ 151 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKK 151 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCc
Confidence 34444444444432 34555555555444 223445888889999999887665544 234455666667888
Q ss_pred hhHHhHHHHHHHHhhhhhc---hhhHhHHHHHHHHHHhhccCC-ChHHHHHHHHHH---HHHHHhhcccchhchHHhHhc
Q 000201 947 ASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADE-NESVRDAALGAG---HVLVEHYATTSLPLLLPAVED 1019 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g---~~f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al---~~i~~~~~~~~i~~llp~l~~ 1019 (1866)
|.+|..+...+..+-..-+ ..-.|-...+...++..+... .+..-...++.+ +..+..++...++.+-..+..
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 9999988887776554221 111232333333333333211 011122233333 333334445555555555555
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc---CCCcHH
Q 000201 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLS 1096 (1866)
Q Consensus 1020 ~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~---~D~~~~ 1096 (1866)
.+...+--++..+++++..+...-++ ... .+...+++..++... +|.-..
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~--------------~l~-------------a~~~a~lL~al~~l~ps~~D~~~t 284 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPT--------------ALA-------------AELNARLLTALMTLSPSENDDLLT 284 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCC--------------cch-------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 55556666888888888877644221 000 111223444444332 232222
Q ss_pred HHHH--HHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHH-HhcccCCCC
Q 000201 1097 VRQA--ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI-LSRGLKDPS 1173 (1866)
Q Consensus 1097 vR~~--A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~-L~~~L~d~~ 1173 (1866)
+... -......++...+......+|.+++.++..+.+..++.-+.+.+++.++...... +.+.+... +...+.-+.
T Consensus 285 ~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf 363 (1176)
T KOG1248|consen 285 VAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF 363 (1176)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH
Confidence 2111 1112223344445555566788888888888888888888999999887754322 23333332 444444444
Q ss_pred ccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCC
Q 000201 1174 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253 (1866)
Q Consensus 1174 ~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 1253 (1866)
..+-..++..+..+.+.+|+ ...+++-..+..+...-.+++..-+..--.++|.....+|++.+-.++|-=+......
T Consensus 364 ~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~- 441 (1176)
T KOG1248|consen 364 HAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLS- 441 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccc-
Confidence 45555667777777777775 3344554555555443344444444455678888899999988777777433111111
Q ss_pred chhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHh------cCCCC--H
Q 000201 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA------MGDDD--M 1325 (1866)
Q Consensus 1254 ~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~------l~~~~--~ 1325 (1866)
....+++|.|-......+ +.-|...++|...+. +.... .
T Consensus 442 --------------~~RsWLLPvLR~~i~~A~-------------------La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 442 --------------FTRSWLLPVLRDYIIGAS-------------------LAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred --------------cchhHhHHHHHHhhccCc-------------------HHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 112455665544443322 222333333322211 11111 1
Q ss_pred -HHHHHHHHHHhHhhhcc----ch-hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc---------cchhhhhHHH
Q 000201 1326 -DVQSLAKEAAETVTLVI----DE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS---------KLYLVDEAPN 1390 (1866)
Q Consensus 1326 -~vr~~a~~~l~~l~~~~----~~-~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~---------~~~~~~~~~~ 1390 (1866)
.++....+.|+-+-.-+ +. ..+..+.+.+...+... +..|...|..|..+.+.. ...++.+..+
T Consensus 489 ~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Akn 567 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhH
Confidence 11222222222221111 11 22566666666666554 589999999999887653 2346678888
Q ss_pred HHHHHHHHhCCCCh------hHHHHHHHHHH-HHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCc----cccCCcC
Q 000201 1391 MISTLIVLLSDSDS------TTVAAAWEALS-RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP----ILIPGFC 1459 (1866)
Q Consensus 1391 il~~L~~ll~d~~~------~v~~~A~~aL~-~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~----~~l~g~~ 1459 (1866)
.++.++.....+.. ..+...+.... ..+...+.+....+...+....... +.......... ....+.+
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~-~~s~~~~~~~slLdl~~~~a~~ 646 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDL-DESVASFKTLSLLDLLIALAPV 646 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccc-hhhhhhHHHHHHHHHHHhhhcc
Confidence 99999998874332 33333333333 4445555554444433332221111 11000000000 0000101
Q ss_pred -CCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChh-hhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000201 1460 -LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 1537 (1866)
Q Consensus 1460 -~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~-~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~ 1537 (1866)
...+++.++.+.-....+.+..++..+...|..++..-++. ....++..|...|...++. .+...+...+.+|..|+
T Consensus 647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLL 725 (1176)
T ss_pred ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 11223333322222233447788889999999998763222 2344555666666666655 36678999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------cC---ChhhHHHHHHHHhccCChhHHHHH
Q 000201 1538 RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--------ST---RVDPLVGDLLSSLQVSDAGIREAI 1606 (1866)
Q Consensus 1538 ~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~--------~~---~~~~~l~~L~~~l~~~~~~vr~~~ 1606 (1866)
+..+.....+++.+++.++=++.+.|...|..|..||-.+..+ .+ .+.+++..|..++-.....++...
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 9999777788999999888888878999999999998777522 12 456677777777655555566665
Q ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHH----HHHHhccCCCCcch
Q 000201 1607 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL----QELLNLASSPSWAA 1682 (1866)
Q Consensus 1607 l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l----~~ll~~~~~~~~~~ 1682 (1866)
+-|+..++...+..++.++...+++.+...+.+.+..++.+|...+..++..+|...+.+.+ +.++.|..+.....
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999999999999999999987655544 44555666655555
Q ss_pred hhhHHHHHHHHHhhCCCcccC
Q 000201 1683 RHGSVLVFATFLRHNPSAISM 1703 (1866)
Q Consensus 1683 r~~~~~~L~~~l~~~p~~~~~ 1703 (1866)
|...-..|..+++.++...+.
T Consensus 886 r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHH
Confidence 655556777778877765543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-12 Score=149.38 Aligned_cols=424 Identities=17% Similarity=0.224 Sum_probs=304.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcH----hhHHhHHHHHH-hhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 663 LVAFSDQVVAVREAAECAARAMMSQLSA----QGVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 663 l~~~~D~~~~VR~~a~~al~~i~~~l~~----~~v~~llp~L~-~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
...++|+--+-|++|+--+..+.+.+.. ..+..++..+. +...+.+-..|+|++..+.+++-+.+..-..++..+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 3456677777888888777777765543 23466666443 455666767777999999999888766655588899
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccch---hHHhHHHHHHHhhCCCChhHHHHHHHHHh--ccccccCC-cchh
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKYSLDILLQ--TTFVNTVD-APSL 811 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L~~~l~d~~~~vr~al~~L~~--~~~~~~~~-~~~l 811 (1866)
+|.++.+++|++..||.-||.+|-.+++..+.. ++..+...+++...|++..+|.+.+.+-. ...+...+ .-++
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 999999999999999999999999999988764 45889999999999999888865554433 12222222 4578
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
+.++|.+...+...++.+|.....++..+-. ...-++..|++.++++|.+.+.|+..+||..+-.+++.+...+.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~--- 240 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR--- 240 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---
Confidence 8999999999999999999998888777765 23356788999999999999999999999888777777665433
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
++.+. . ..++.++.+...+.++++.++..++..+..+....|.++-+|
T Consensus 241 -------------s~P~s-~------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 241 -------------SSPSS-M------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred -------------cCccc-c------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 11110 0 123344555566677788888888888888888899999999
Q ss_pred HHHHHHHHHhhccCCCh-HHHHHHHHHHHHHHHhhccc----chh--chHHhHhcccCCCchHHHHHHHHHHHHHHHHhc
Q 000201 972 LQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~-~VR~~a~~al~~i~~~~~~~----~i~--~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~ 1044 (1866)
++.++..++.++.+..+ .+++.+...-..+...++.+ .++ .++..+...+.++....|.++++.+..+..+.+
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 99999999999988776 46665554433333333222 122 477777788888888899999999888776654
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHH
Q 000201 1045 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVL 1123 (1866)
Q Consensus 1045 ~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l 1123 (1866)
|.. .. +.+.++..|...++|.+..|-..++.++..++..... .+.+++.
T Consensus 369 ~ql-----------------------~~-----h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~-- 418 (675)
T KOG0212|consen 369 GQL-----------------------LV-----HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLL-- 418 (675)
T ss_pred chh-----------------------hh-----hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHH--
Confidence 321 11 2235667777788999999999999999999863221 2333333
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
.+++.+....--.+.-+...+.++|..+.+
T Consensus 419 --sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 419 --SLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred --HHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 334444444444455566666666665544
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-09 Score=130.62 Aligned_cols=693 Identities=18% Similarity=0.200 Sum_probs=348.9
Q ss_pred CCHhHHHHHHHHHHHHHhh------cCC-----CC--hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HhChhHHHH
Q 000201 868 PIPEVRSVAARAIGSLIRG------MGE-----EN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA-ALGTVYFEH 933 (1866)
Q Consensus 868 ~~~~vR~~a~~aL~~l~~~------~g~-----~~--~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~-~~g~~~l~~ 933 (1866)
..|+.|......+..+... +++ .. +..++......+.... ..|..++..++.+.. .-+.+.+..
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~ 214 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLS 214 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHH
Confidence 3467777777666666542 122 11 2223333322333322 367777777766542 222334445
Q ss_pred HHHHHHHHhccCChh--HHhHHHHHHHHhhhhhc-hhhHhHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHHHhhccc
Q 000201 934 ILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~--vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~ 1008 (1866)
++..+++.-+...++ .+-+.+..+..+..... ++..||....+..+-..-...+. -+|+ .+..+++.++-.
T Consensus 215 Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK----llvKl~QRiGlv 290 (1133)
T KOG1943|consen 215 FLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK----LLVKLVQRIGLV 290 (1133)
T ss_pred HHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH----HHHHHHHHhhhe
Confidence 555544433332222 45666777766666654 45667766665554443222221 2232 223333322211
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
. -.-...+||...+.-.+.+.+=..-.+.+.++-++. +++|+++.- +..+.++..|+.
T Consensus 291 ~---------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~-~d~e~edv~------------eivE~vie~Lls 348 (1133)
T KOG1943|consen 291 S---------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQ-DDDEGEDVP------------EIVEFVIEHLLS 348 (1133)
T ss_pred e---------cCCCCcchhhhcccchhhhccCccccccCccccccc-ccccccccH------------HHHHHHHHHHHH
Confidence 0 011347899765544443332100001111221221 111111111 122356777778
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHh--ccccccchHHHH
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPIL 1165 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L 1165 (1866)
.++|.+..||..|++.++.+....|..+.+ .++..++..++--+ +..=..|+-+|+++...- .+..++.++|.+
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPPELAD---QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcHHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 889999999999999999999999965543 44444444444222 223336777888887541 123456888888
Q ss_pred hcccC--------CCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHH-HHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1166 SRGLK--------DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI-RTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1166 ~~~L~--------d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l-~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+++. .....+|-++|..+..+....++.++.+++..+.+.+ ..++-|++-.+|.+|..||.......|..
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC
Confidence 87664 2245689999999999999999999999999888875 46888999999999887765433222210
Q ss_pred hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHH
Q 000201 1237 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPAL 1316 (1866)
Q Consensus 1237 ~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L 1316 (1866)
|.-++-+. ..+-.+++..+.+
T Consensus 506 --------------------------------------p~Gi~Lis-----~~dy~sV~~rsNc---------------- 526 (1133)
T KOG1943|consen 506 --------------------------------------PHGISLIS-----TIDYFSVTNRSNC---------------- 526 (1133)
T ss_pred --------------------------------------CCchhhhh-----hcchhhhhhhhhH----------------
Confidence 00000000 0011112221111
Q ss_pred HHhcCCCCHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHH
Q 000201 1317 LSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 1393 (1866)
Q Consensus 1317 ~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~-l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~ 1393 (1866)
...+...+. +.+...+++.+... +.+-+..+|..+++++..+....+..+.. ..++
T Consensus 527 ------------------y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~---~~L~ 585 (1133)
T KOG1943|consen 527 ------------------YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD---YVLP 585 (1133)
T ss_pred ------------------HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---cchh
Confidence 111111110 11233344433333 55555666666666666665544433332 2344
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHH-
Q 000201 1394 TLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL- 1472 (1866)
Q Consensus 1394 ~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~- 1472 (1866)
.++......+...|..+..+.+.++....+-. .++..+.+. .+ .++..++|.+.
T Consensus 586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~--~~~~~l~e~-----------------~i------~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLE--PVIKGLDEN-----------------RI------AGLLSIIPPICD 640 (1133)
T ss_pred hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh--hhhhhhHHH-----------------Hh------hhhhhhccHHHH
Confidence 44555555666666666666666655432211 000000000 00 01111222222
Q ss_pred HhhccCC-HHHHHHHHHHHHHHHhhcChhhhhhhhhhhhH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHH
Q 000201 1473 QGLISGS-AELREQAALGLGELIEVTSEQSLKEFVIPITG-PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 1550 (1866)
Q Consensus 1473 ~~L~~~~-~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~-~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~ 1550 (1866)
....-|. .-.|...+..+..+...- ...+..++..=+. .+...+.. +..+|.++..++++++...-..-..+...
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~ 717 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAP 717 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhH
Confidence 1111111 222333333333332221 1112223222111 12222322 33899999999999887532111111124
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHH--hccCChh-hHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcCccc----
Q 000201 1551 LQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVD-PLVGDLLSSLQVS-DAGIREAILTALKGVLKHAGKSV---- 1621 (1866)
Q Consensus 1551 L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~--~~~~~~~-~~l~~L~~~l~~~-~~~vr~~~l~aL~~vi~~~~~~l---- 1621 (1866)
++...+..+.++ ++.+|.-..-++|.+- .++.+.. .+...++...-.. .++-|...+.++..++...+...
T Consensus 718 li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 718 LITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666666666666 7789988888888873 2333332 2323333332211 46678888899998887776332
Q ss_pred cHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhcCh------hHHHHHHHHHHhccCCCCcchhhhHHHHHH
Q 000201 1622 SSAVKIRVYSVLKDLVYHD----DDHVRVSAASILGIMSQCMED------GQLADLLQELLNLASSPSWAARHGSVLVFA 1691 (1866)
Q Consensus 1622 ~~~~~~~i~~~L~~~l~~~----~~~vr~~aa~~l~~L~~~~~~------~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 1691 (1866)
.+.+++.+++.+.+...++ ...||++|...+..+....+. +.+...+..++.+.-+.-...|.-+..++.
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 2344555555554433333 257999999999887665552 223344433443332222223555555667
Q ss_pred HHHhhCCC
Q 000201 1692 TFLRHNPS 1699 (1866)
Q Consensus 1692 ~~l~~~p~ 1699 (1866)
.++.+.|.
T Consensus 878 qi~~~~~~ 885 (1133)
T KOG1943|consen 878 QIVVHSPS 885 (1133)
T ss_pred ceeecCCC
Confidence 76666443
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-08 Score=123.76 Aligned_cols=574 Identities=17% Similarity=0.194 Sum_probs=312.3
Q ss_pred hHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHH----HHHHHHHHHHHHHhC-cCchhcHHhHHHHHHH
Q 000201 590 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRR----EGALLAFECLCEKLG-RLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r----~~al~al~~L~~~l~-~~~~p~v~~llp~ll~ 664 (1866)
..|+.|+-.++.++... +.. . .+..|+...+.-+..+..+ .+.+.++..+..... +..-||+...+..+-.
T Consensus 190 ~~r~~aalllsk~~sR~--D~~-~-~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~ 265 (1133)
T KOG1943|consen 190 ILRRSAALLLSKLFSRT--DVK-D-LLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSV 265 (1133)
T ss_pred hhHHHHHHHHHHHcccc--cHH-H-HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcc
Confidence 67888888888777532 111 1 1455565555444444433 566666666666554 3455666555555443
Q ss_pred HcCCCC--HHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC---------------h
Q 000201 665 AFSDQV--VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA---------------P 727 (1866)
Q Consensus 665 ~~~D~~--~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~---------------~ 727 (1866)
+-.+.+ .-+|+.-.....+|.-.. -.-.+++|+...+.-.+.+++-... .
T Consensus 266 ~~~~~d~~~llrKllvKl~QRiGlv~-------------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~ 332 (1133)
T KOG1943|consen 266 CRESNDGQSLLRKLLVKLVQRIGLVS-------------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEG 332 (1133)
T ss_pred cccccccHhHHHHHHHHHHHHhhhee-------------cCCCCcchhhhcccchhhhccCccccccCcccccccccccc
Confidence 332222 233333333222221100 0114578999888766665533221 1
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh-h-HH-HHHHHHHhccccc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-H-TK-YSLDILLQTTFVN 804 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~-~-vr-~al~~L~~~~~~~ 804 (1866)
+++...+..++..++..++|.+..||..|++.++.+.......-..+++...++.+ .|.+ + .- .++-.+...+--.
T Consensus 333 edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~-~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 333 EDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF-NPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc-CcCCchhHHHHHHHHHHHHHhcC
Confidence 12334455677788889999999999999999999998776333356666666633 2322 1 11 2333333332222
Q ss_pred cCCcchhhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHH-HhcCCCHhHHHH
Q 000201 805 TVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVDPIPEVRSV 875 (1866)
Q Consensus 805 ~~~~~~l~~l~p~L~~~l~--------d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~-~l~d~~~~vR~~ 875 (1866)
-.-...+..++|.+.+++. .....+|..||-+.-.++.. ..+.++.|++..+.+.|.. .+-|+.-.+|.+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 2333467789999998774 23568999999999999885 3567889999988877665 567999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-hccCChhHHhHHH
Q 000201 876 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRASVRDGYL 954 (1866)
Q Consensus 876 a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~-l~~~~~~vR~~al 954 (1866)
|..|+-..+...|. ++.-++.+ ... +.-+...|......+...+..+. .+...++..++.. +.+-+..+|+.+.
T Consensus 491 AsAAlqE~VGR~~n--~p~Gi~Li-s~~-dy~sV~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 491 ASAALQENVGRQGN--FPHGISLI-STI-DYFSVTNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred HHHHHHHHhccCCC--CCCchhhh-hhc-chhhhhhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence 99888877766543 22222211 111 11111233333333333222221 1334444444433 4445666666666
Q ss_pred HHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 955 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 955 ~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
.++..|....++. .....+|+++......+...|..+.-+...++..+..-. |.+. .+ ...|
T Consensus 566 ~aL~~Ls~~~pk~---~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-----~~~~-~l----~e~~----- 627 (1133)
T KOG1943|consen 566 YALHKLSLTEPKY---LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-----PVIK-GL----DENR----- 627 (1133)
T ss_pred HHHHHHHHhhHHh---hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-----hhhh-hh----HHHH-----
Confidence 6666666555542 223566666666555566666666555555444321100 0000 00 0000
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhcC
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV--SLSVRQAALHVWKTIVANT 1112 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~--~~~vR~~A~~~l~~l~~~~ 1112 (1866)
+. ....+++.++...-+. ....|++....+..+..+.
T Consensus 628 ------------------------------------i~-----~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 628 ------------------------------------IA-----GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred ------------------------------------hh-----hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 00 0011222222111110 1356777777777777666
Q ss_pred hhhHHHhHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--cccc-chHHHHhcccCC-CCccchhhHHHHHHHH
Q 000201 1113 PKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLP-SIIPILSRGLKD-PSASRRQGVCIGLSEV 1187 (1866)
Q Consensus 1113 p~~l~~~l~~-l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l~-~llp~L~~~L~d-~~~~vr~~a~~~L~~l 1187 (1866)
++.+.+++-. ....+.+.+.+++ ..|..|..++++++...-. .-.. .++......+.+ .+..+|.+...+++.+
T Consensus 667 ~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~l 745 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVL 745 (1133)
T ss_pred chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccC
Confidence 6555454433 3444445555555 8899999999999875422 1111 233333333343 3667788877776643
Q ss_pred HHhhchhhHHhh-HhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHHhch----hhHhhHHHHHHHhccC
Q 000201 1188 MASAGKSQLLSF-MDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHALED 1251 (1866)
Q Consensus 1188 i~~~~~~~l~~~-l~~ll~~l~~~L-~d~~~~vr~~A~~al~~l~~~~g~----~~~~~ilp~Ll~~L~~ 1251 (1866)
..+.+.-+ .+.+...+.... .|..++-|.....++..+++..+. ....++...|++.+.+
T Consensus 746 ----p~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 746 ----PSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred ----cHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11222222 233344443333 344778888888888888877662 3456677777777754
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-11 Score=155.16 Aligned_cols=491 Identities=16% Similarity=0.173 Sum_probs=320.9
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
+...|+.+..-|..+.. .|.+. ....+.+.+++.+ ++...|..+-.++..+...- ...+.-+...+.+-+.
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~~~---~~~~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~----~~~~~l~~n~l~kdl~ 89 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGYDI---SFLFMEVIKLISS-KDLELKRLGYLYLSLYLHED----PELLILIINSLQKDLN 89 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT------GSTHHHHHCTCSS-SSHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHH-cCCCC---chHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHhhc
Confidence 44556655555444332 23221 1334555556664 45555555555444444322 2245567788888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 747 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D 747 (1866)
++++.+|-.|..++..+. +++-.+.++|.+.+.+.+++|.+|+.|+.++..+....|+.+... +++.+.+++.|
T Consensus 90 ~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d 163 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSD 163 (526)
T ss_dssp SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTH
T ss_pred CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccC
Confidence 999999999999888876 466668899999999999999999999999999999988766442 68888899999
Q ss_pred CChHHHHHHHHHHHHHHhhccc---hhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh--hhHHHHHHHh
Q 000201 748 THPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRG 821 (1866)
Q Consensus 748 ~~~~VR~aA~~aL~~l~~~i~~---~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l--~~l~p~L~~~ 821 (1866)
+++.|+.+|+.++..+ +.-.+ +.+..+++.+.+.+.++++..+ ..++.+..... ...... ..+++.+...
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~---~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP---MEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS---SSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc---CChhhhhHHHHHHHHHHH
Confidence 9999999999999988 21111 2345666677777778887665 45555543211 111122 4678888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 000201 822 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 901 (1866)
Q Consensus 822 l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~ 901 (1866)
+.+.++.+...++..+..+.. . .+....+++.+..++.++++.+|..+..++..++....+..+ .. ...+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~---~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~~~ 310 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSP---S----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLILF 310 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---S----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHHHH
T ss_pred hhccccHHHHHHHHHHHHhhc---c----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hh-hhhhh
Confidence 888888998888887776544 1 125677889999999999999999999999988876522212 11 11223
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHH
Q 000201 902 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 980 (1866)
Q Consensus 902 ~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll 980 (1866)
.+..+.+..+|..++..+..++. .+.+..+++.+...+.+ .+..+|..++..++.++..++..+..|++.++.
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~--- 384 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLAN---ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLK--- 384 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHH---
T ss_pred eecCCCChhHHHHHHHHHhhccc---ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHH---
Confidence 44434556688888877766654 33556677777777743 477788888888888888877665555554433
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1060 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~ 1060 (1866)
.+....+.+...+...+..++...+.
T Consensus 385 -ll~~~~~~~~~~~~~~i~~ll~~~~~----------------------------------------------------- 410 (526)
T PF01602_consen 385 -LLEISGDYVSNEIINVIRDLLSNNPE----------------------------------------------------- 410 (526)
T ss_dssp -HHHCTGGGCHCHHHHHHHHHHHHSTT-----------------------------------------------------
T ss_pred -hhhhccccccchHHHHHHHHhhcChh-----------------------------------------------------
Confidence 33333334433333333333322110
Q ss_pred cchHHHHHHHHHHhchhhhHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHH
Q 000201 1061 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139 (1866)
Q Consensus 1061 ~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~-D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R 1139 (1866)
.+...+..++.... -.+..++..++.++|.++...+. . ...+.++..+...+...+..+|
T Consensus 411 -----------------~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~~~~~~~~~l~~~~~~~~~~vk 471 (526)
T PF01602_consen 411 -----------------LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-ESAPDILRSLIENFIEESPEVK 471 (526)
T ss_dssp -----------------THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-THHHHHHHHHHHHHTTSHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-ccHHHHHHHHHHhhccccHHHH
Confidence 01112222222222 23456788888888887765443 1 1466667777777777778899
Q ss_pred HHHHHHHHHHHHHhccc-cccchHHHHhcccC--CCCccchhhHHHHHH
Q 000201 1140 QVAGRALGELVRKLGER-VLPSIIPILSRGLK--DPSASRRQGVCIGLS 1185 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~--d~~~~vr~~a~~~L~ 1185 (1866)
.....++..+....+.. ..+.+.+.+..... +.++++|..|+..+.
T Consensus 472 ~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 472 LQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999877653 55688888888777 779999998887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-10 Score=150.81 Aligned_cols=438 Identities=16% Similarity=0.163 Sum_probs=314.1
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhc
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 614 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~ 614 (1866)
+--++..+.+.|.++++.++..+..++..+... +..+..++ .+..++.++++.+|+.|+.++..+.+.. ++.+...
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~-~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIP-DVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHH-HHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHH-HHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHH
Confidence 445788888999999999999999998875421 22333343 3445556888899999999999999863 4554433
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 693 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v- 693 (1866)
+++.+.+.+.++ ++.++.+|+.++..+ +..++.+.+.+..+++.+...++++++-++......+..++..- +...
T Consensus 153 -~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~~~~ 228 (526)
T PF01602_consen 153 -LIPKLKQLLSDK-DPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PEDAD 228 (526)
T ss_dssp -HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HHHHH
T ss_pred -HHHHHhhhccCC-cchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hhhhh
Confidence 788888888654 578888888888888 22222222556677777777779999999888888887765432 2333
Q ss_pred -HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH
Q 000201 694 -KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 772 (1866)
Q Consensus 694 -~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i 772 (1866)
..+++.+...+.+.++.+..+++.++..+....+ .+..+++.+..++.++++.+|..++.+|..++... .+.+
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v 302 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh
Confidence 5688888888888899999999988886655322 44578888999999999999999999999998654 2333
Q ss_pred HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 773 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
......+.-...+++..+| .+++.+.... +......+++.+...+.+. +.+.|..++..++.++.....
T Consensus 303 ~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~-----~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---- 373 (526)
T PF01602_consen 303 FNQSLILFFLLYDDDPSIRKKALDLLYKLA-----NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---- 373 (526)
T ss_dssp GTHHHHHHHHHCSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----
T ss_pred hhhhhhhheecCCCChhHHHHHHHHHhhcc-----cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----
Confidence 3222223333346777777 5777665422 2345677899999988554 788999999999999985422
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh-h
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-V 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~-~ 929 (1866)
..+..++.+.+++......+...+...+..+....+ +.....+..+.+.+.+-.....+..+++.+|+.+..... .
T Consensus 374 --~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~-~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~ 450 (526)
T PF01602_consen 374 --DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP-ELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE 450 (526)
T ss_dssp --SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST-TTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT
T ss_pred --hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc
Confidence 234456677777777777888888888888887643 344667888888887766667888888999998877764 3
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc--CCChHHHHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHV 1000 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~--d~~~~VR~~a~~al~~ 1000 (1866)
....++..+.+.....++.+|...+.++..+....+..- ..+.+++.+.+... +.+.+||+.|..-+..
T Consensus 451 ~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 451 SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 455666777777777788899999999998887776421 23467777778777 7799999988765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-08 Score=121.07 Aligned_cols=643 Identities=15% Similarity=0.176 Sum_probs=354.9
Q ss_pred hhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCcccccc-chheeeecCCchhHHHH-H--------HHHhhhcC
Q 000201 293 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-TSLWIAVHDPEKSVAEA-A--------EDIWDRYG 362 (1866)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--------~~~w~~~~ 362 (1866)
.+++.+++.+|+.+|+..|++|+++|.+... ...|. ..+-+..-|..+.+.+. | .+.|....
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 4577889999999999999999999997651 12233 33344555665555333 2 25698762
Q ss_pred -----CccCCC----h-hhhhhhcCCCCHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000201 363 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 431 (1866)
Q Consensus 363 -----~~~~~~----~-~~ll~~l~~~~~~vr~~aa~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 431 (1866)
+.+.++ + ..++.++.+....+|.+--..+..++ ..+|+.|++++...-..- ... ....=
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~L----qs~------~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLL----QSQ------DANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHh----cCc------chhhH
Confidence 223322 2 66778888888889988888887776 446776666666553321 111 11122
Q ss_pred hHHHHHHHHhhhhcC--CCC----hH----HHHHHHHh---hhcCCCcHHHH---HHHHHHHHHHHH------hhcccch
Q 000201 432 QGIALALHSAADVLR--TKD----LP----VIMTFLIS---RALADTNADVR---GRMLNAGIMIID------KHGRDNV 489 (1866)
Q Consensus 432 ~~~~~~l~~~~~~~~--~~~----~~----~~~~fli~---~~l~d~~~~vr---~~~~~a~~~~i~------~~g~~~~ 489 (1866)
-++..+|..++.... .++ +. .+|+-+.+ +.+.+.+.... .-++..-...+. ....+..
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 445666666665322 111 11 22222222 23334433322 222221111111 1123333
Q ss_pred hhhHHHHHHhhcCCCCChh-----------hhhhHHHHHHHHHHHHhhhhccCC---c------------chHHHHHH--
Q 000201 490 SLLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKDD---P------------KVHAVVDK-- 541 (1866)
Q Consensus 490 ~~ll~~le~~L~~~~~~~~-----------~~~~vr~~av~~l~~i~~~l~~~~---~------------~~~~l~~~-- 541 (1866)
..-+.+|-..++.+-+.+. -+-..+.-|...+.++...+.+.. + +.+.+...
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455444332111 011245556777777765544321 0 01112222
Q ss_pred -HHHhcCC---CcHHHHHHHHhhhhhhhH------hhhhh--------------------------hHHHHHHHHHHHHc
Q 000201 542 -LLDVLNT---PSEAVQRAVSSCLSPLMQ------SMQDE--------------------------APTLVSRLLDQLMK 585 (1866)
Q Consensus 542 -l~~~l~~---~~~~v~~~~~~~l~~lv~------~~~~~--------------------------~~~~l~~ll~~L~~ 585 (1866)
.+..++. -++.|-.-+..-+...+. ..... ..++++.-++-.
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~-- 382 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIF-- 382 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchh--
Confidence 2222222 111111111111100000 00001 112222211111
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHhCcCchhc---H
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGRLFEPY---V 655 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~-------~~~~~~~r~~al~al~~L~~~l~~~~~p~---v 655 (1866)
++-+..+.+|...+-.+++..|.+.+. ++++++.+.+. +.++++..+||+.+++.+++.+.+ -.|| +
T Consensus 383 ed~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K-~s~~~~~m 459 (1010)
T KOG1991|consen 383 EDGYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK-KSPYKSQM 459 (1010)
T ss_pred cccCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc-CCchHHHH
Confidence 111234556777888888888877773 67888887664 456789999999999999988763 2333 3
Q ss_pred H-hHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHhh-HHhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhCh---h
Q 000201 656 I-QMLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---Q 728 (1866)
Q Consensus 656 ~-~llp~ll~~~~D~~~~VR~~a~~al~~i~-~~l~~~~-v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~---~ 728 (1866)
. -+++.++..+.++.-..|..|++.+..+. -.++... ....+.....+|. |++-.+|..|+.+|..+..... .
T Consensus 460 E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 460 EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 3 35677788899999999999999999998 4455544 3777787888887 7889999999999999998866 3
Q ss_pred hHHhhhcchhHHHhhhccCCChHHHHHHHHHH-HHHHhhccc--hh-HHhHHHHHHHhhCC---CChhH--H--H---HH
Q 000201 729 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHT--K--Y---SL 794 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~-i~~lv~~L~~~l~d---~~~~v--r--~---al 794 (1866)
.+..++|+++..++.+.++.+.+.-....+.+ ..+++.+.. .+ .+.+...+++.+.+ .++.. + . ++
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 48899999999999999987766655555443 344444432 12 25566666676653 11111 1 1 22
Q ss_pred HHHHhc--cc--cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 795 DILLQT--TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 795 ~~L~~~--~~--~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.++... ++ ...+-...-+.++|++...++..-.+.-..+++++.++.-.. +++.|..-.+++.+.+.+++.
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~---~~Isp~mW~ll~li~e~~~~~-- 694 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS---KEISPIMWGLLELILEVFQDD-- 694 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh---cccCHHHHHHHHHHHHHHhhh--
Confidence 222221 11 111111122344555555565555566666666666554321 345555556666666665542
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--Chh
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RAS 948 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~ 948 (1866)
|-+||++++|++-+.+.-+... .. -...+...+...+...+.+. ...
T Consensus 695 -----------------~~dyf~d~~~~l~N~vt~g~~~-~~-------------s~~~y~~il~~i~~~~l~~e~~~D~ 743 (1010)
T KOG1991|consen 695 -----------------GIDYFTDMMPALHNYVTYGTPS-LL-------------SNPDYLQILLEIIKKVLTSENGEDS 743 (1010)
T ss_pred -----------------hHHHHHHHHHHHhhheeeCchh-hh-------------ccchHHHHHHHHHHHHHcCCCCchH
Confidence 2357888888886665433321 00 01123333333444444442 344
Q ss_pred HHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccC--CChHHHHHH
Q 000201 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAA 994 (1866)
Q Consensus 949 vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d--~~~~VR~~a 994 (1866)
-.++++.++..+...++.....|++..+...+..+.. +....|..+
T Consensus 744 d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~ 791 (1010)
T KOG1991|consen 744 DCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVML 791 (1010)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHH
Confidence 4567889999999888877777777777777776655 333444433
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-08 Score=130.33 Aligned_cols=500 Identities=13% Similarity=0.095 Sum_probs=313.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
.+-..| ++.+...|+.|.+.+..... .|.+. ..+++.+.+++..+ +...|..+...+...++. -.....-
T Consensus 36 ELr~~L-~s~~~~~kk~alKkvIa~mt-~G~Dv---S~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDL-NGTDSYRKKAAVKRIIANMT-MGRDV---SYLFVDVVKLAPST-DLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHHH-CCCCc---hHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 333444 34444566666665444332 23222 23555666666654 455565454444444322 1223455
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.+.+-+.|+++.+|-.|..++..|. .+.-++.+++.+.+.+.|.++.+|+.|+.++..+....|+.+.. ..+
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~ 180 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDF 180 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cch
Confidence 6788888999999999998888776653 24555788899999999999999999999999998887765322 256
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
++.+.+++.|+++.|..+|..+|..+...-.+. .....+..++..+.+-++-.+ ..++.+.. +.+ .+......+
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P-~~~~e~~~i 257 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRP-SDKESAETL 257 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCC-CCcHHHHHH
Confidence 677888899999999999999999997643322 124455556666654444333 45555533 222 123345678
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
+..+...+++.++.|...|+.++-.+.... ++..+......+.+.+..+ ....+++|..+.+.+..++... +..|..
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~ 334 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT 334 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH
Confidence 888888888999999999999888776532 1112222233343444444 4567899999999998888744 233333
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 974 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~ 974 (1866)
-+..++-.. ++..+ +|...++.|..++ ..+..+.++..+.+.+.+.+.+++..++.+++.++..++. ....
T Consensus 335 ~~~~Ff~~~-~Dp~y-IK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~ 405 (746)
T PTZ00429 335 NLDSFYVRY-SDPPF-VKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPD 405 (746)
T ss_pred HHHhhhccc-CCcHH-HHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHH
Confidence 233222222 34434 6777666665554 3445677888888888888999999999999999987765 4556
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhccc---CCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 975 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 975 il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l---~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
++..++..+.+..+-+ ..++..+..+++.++... +++.+.... .=.+...|.+.++++|+....+.
T Consensus 406 cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~------- 474 (746)
T PTZ00429 406 CANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE------- 474 (746)
T ss_pred HHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh-------
Confidence 6666777776544434 356777888887776542 333333221 11234577777888888642211
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l 1131 (1866)
. -.+++..+.....+.+..||.+.+.+...+.-..|...+..+..++.....
T Consensus 475 ---------------------~-----a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~-- 526 (746)
T PTZ00429 475 ---------------------N-----GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTT-- 526 (746)
T ss_pred ---------------------h-----HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh--
Confidence 0 012333333334566788998888887777777775444444444433221
Q ss_pred cCCCHHHHHHHHHHH
Q 000201 1132 ASSSSERRQVAGRAL 1146 (1866)
Q Consensus 1132 ~~~~~~~R~~A~~~L 1146 (1866)
.+.++++|.-|..-.
T Consensus 527 ~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 527 HSDDPDVRDRAFAYW 541 (746)
T ss_pred cCCChhHHHHHHHHH
Confidence 246778888776544
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-08 Score=127.64 Aligned_cols=494 Identities=12% Similarity=0.078 Sum_probs=311.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcc-hHHHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDK 541 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~-~~~l~~~ 541 (1866)
..++..-+..++.-....... |.+....++.++. .+..+ +-.+|.-+...+...+ ..+|. .--.+..
T Consensus 42 ~s~~~~~kk~alKkvIa~mt~-G~DvS~LF~dVvk-~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaINt 109 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMTM-GRDVSYLFVDVVK-LAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVNT 109 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHHC-CCCchHHHHHHHH-HhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHHH
Confidence 344555555555444444433 5554444444554 43331 1456665555444443 33333 3346788
Q ss_pred HHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHH
Q 000201 542 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 621 (1866)
Q Consensus 542 l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~ 621 (1866)
+.+.+.++++.+|..+..++..+.. ....+.+...+.+.+.+.++-+|+.|+.|+..+.... ++.+...++++.|.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~ 185 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHH
Confidence 8999999999999999888765432 2233444444555667888999999999999988743 34433446778888
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HhhHHhHHHH
Q 000201 622 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLPS 699 (1866)
Q Consensus 622 ~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~--~~~v~~llp~ 699 (1866)
+.+.+ .++.+...|+.++..+.+..+..+.. ....+..++..+.+-++--+-...+.+ ....+ ......++..
T Consensus 186 ~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 186 ELLND-NNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTR 260 (746)
T ss_pred HHhcC-CCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHH
Confidence 87765 46778888888888887755433321 233344455555544433333333333 22222 1234678888
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHH
Q 000201 700 LLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 778 (1866)
Q Consensus 700 L~~~L~~~~w~~r~~a~~~L~~l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 778 (1866)
+...|.+.+.-+-.+|+.++-.+.... ++.....+..+.+.++.+ ..+++++|..+...+..+..... ..+...+..
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~ 338 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDS 338 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHh
Confidence 888899999999999999988877543 233333333444555555 45678999999999988876432 233444555
Q ss_pred HHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhh
Q 000201 779 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857 (1866)
Q Consensus 779 L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~l 857 (1866)
+.-..+||.. ++ ..++.|..+. +......++..|.....+.+.+.++.+..++|.++..+. ...+.+
T Consensus 339 Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~c 406 (746)
T PTZ00429 339 FYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPDC 406 (746)
T ss_pred hhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHHH
Confidence 5555677764 55 5777766532 233556788888888889999999999999999997442 245667
Q ss_pred hHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHhChhHHHHHH
Q 000201 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 935 (1866)
Q Consensus 858 l~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L--~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll 935 (1866)
+..|.+++.+...-+ ..++..+..+.......+ +++.|...+ ..-.++..|...++.+|+.+..... ...++
T Consensus 407 V~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L 480 (746)
T PTZ00429 407 ANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDII 480 (746)
T ss_pred HHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHH
Confidence 778888887654433 356777778777655432 455555433 2223344677778888998765432 34555
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc-c-CCChHHHHHHHHHHHHH
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHVL 1001 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l-~-d~~~~VR~~a~~al~~i 1001 (1866)
..++..+...++.||-..+.+...+....+.+..+. +..+++.+ . +.+++||+.|.--++.+
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~----l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQ----LNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHH----HHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 555566666788999988888888777776554443 34444333 3 57789999887544433
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=139.00 Aligned_cols=379 Identities=18% Similarity=0.160 Sum_probs=265.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
.+.++......+...+..+..++..+.+.-.. ..+ ..++|.+++.|. +.+...+..|+++|.+++.+.+++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 44555555555566677777777777654322 111 578999999996 566999999999999999988776433
Q ss_pred hh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc---hhH-HhHHHHHHHhhCCCCh--hHHHHHHHHHhcccc--
Q 000201 733 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI-ASLVPTLLMGLTDPND--HTKYSLDILLQTTFV-- 803 (1866)
Q Consensus 733 ~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i-~~lv~~L~~~l~d~~~--~vr~al~~L~~~~~~-- 803 (1866)
.. ...+|.+..++.+++..|+..|+|||+.++..-.. -.+ ...++.|+..+..+.. .+|.+.-+|...--.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 22 36889999999999999999999999999864321 112 4567788888877664 556655555542111
Q ss_pred ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 804 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 804 ~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
+...-.....++|.|.+++.+.+.++...||.++..+... ..+.+.-.+ -.++|.|..+|..+.+.++..|.+++|.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 1111134677899999999999999999999999999873 222222222 3578999999999999999999999999
Q ss_pred HHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-HHHHHHHHHHHhccCChhHHhHHH
Q 000201 883 LIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVRDGYL 954 (1866)
Q Consensus 883 l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l~~ll~~l~~~l~~~~~~vR~~al 954 (1866)
++...+.. .-...+|.|...+........|..+++.++.+..+-... . -..++|.++..++..+...|..|.
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 77543322 112467777777775555558899999999998843322 1 146889999999999999999999
Q ss_pred HHHHHhhhhhchhhHhHHH--HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc------hhc------hHHhHhcc
Q 000201 955 TLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPL------LLPAVEDG 1020 (1866)
Q Consensus 955 ~~l~~L~~~~g~~f~~~l~--~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~------i~~------llp~l~~~ 1020 (1866)
++++.++.....+-..|+- .+++++...|.-.+..+-..++.++..+.+...... ... -+..++..
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 9999988776666666763 388888888877777776677777777665322111 111 12223333
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 000201 1021 IFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1021 l~d~~w~vR~~s~~ll~~l 1039 (1866)
-.+++..+...+...+...
T Consensus 466 Q~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 466 QSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred hccccHHHHHHHHHHHHHh
Confidence 3445656666666666554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=136.82 Aligned_cols=342 Identities=19% Similarity=0.173 Sum_probs=244.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
.++..+.+ ++.+.+..+.+.+-.+...-. +..+-..+++|.+.+.+...+++..+..|..++..++.+....-.-+
T Consensus 70 ~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34444433 334456666666655554321 22222347889999988777778889999999999998766544444
Q ss_pred HH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---hH-HhHHHHHHhhcCCCCh-hhHHHHHHHHHHHHhhC-h
Q 000201 655 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-P 727 (1866)
Q Consensus 655 v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~v-~~llp~L~~~L~~~~w-~~r~~a~~~L~~l~~~~-~ 727 (1866)
+. ..+|.+..++..++..|++.|.||++.|+..-+.. .+ ..++++|+..+..... ...+.+.++|.+++.+. |
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 43 58999999999999999999999999998755442 22 4577888888776554 77788999999999986 5
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-----HhHHHHHHHhhCCCChhHH-HHHHHHHhcc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-----~~lv~~L~~~l~d~~~~vr-~al~~L~~~~ 801 (1866)
.-....+..++|.|..++.+.+++|..-|||++..+...- ++.+ ..++|.|...+..+...++ .|+.+++...
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 4444566789999999999999999999999999998654 3333 4678999999998887777 6888877622
Q ss_pred ccccC--CcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHH
Q 000201 802 FVNTV--DAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAA 877 (1866)
Q Consensus 802 ~~~~~--~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~ 877 (1866)
...+. ..-.-...+|.|...+. .....+|+.||.+++|++. +.++.+...+ ..++|.|..+++.....+|+.|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 21110 01122346788888777 4555699999999999987 5555554443 36899999999999999999999
Q ss_pred HHHHHHHhhcCCCCh-----hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 878 RAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 878 ~aL~~l~~~~g~~~~-----~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
.+++.+.....++.. ..+++.+.+.|.-.. ...-..+..++..+..
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D-~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD-VKIILVALDGLENILK 436 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC-hHHHHHHHHHHHHHHH
Confidence 999998875444321 236677777774332 2234455566665544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=157.90 Aligned_cols=273 Identities=22% Similarity=0.256 Sum_probs=207.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.|...+.|+++.||..|..+|..+.. +..+|.|...|+|+++.+|..|+..|+.+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45677788899999999999999988742 45778888999999999999999999887653322
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
.+.+...|+|+++.||.+|+.+|+.+.. .+ .+.+.+.+.|++..+| .++..|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2356677889999999999999998752 11 1346678899999998 577777642 11 24
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 896 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~ 896 (1866)
.+...+.|.++.+|..++..|+.+... . ...++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 466789999999999999999988651 1 1125677788999999999999999988643 1 2233
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHH
Q 000201 897 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 976 (1866)
Q Consensus 897 ~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il 976 (1866)
+.+...+.+ .++.+|..++..|+.+. . ++-++.+...+.++++.||..++.+|+.+. + -+...
T Consensus 810 ~~l~~aL~d-~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~------~~~a~ 872 (897)
T PRK13800 810 AAATAALRA-SAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---G------DPAAR 872 (897)
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C------CHHHH
Confidence 456666655 45679999999997643 2 234577788889999999999999998861 1 12356
Q ss_pred HHHHhhccCCChHHHHHHHHHHH
Q 000201 977 PAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 977 ~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
+.+...++|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66778889999999999988875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=134.39 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=189.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
.+.|...+.|++..||..+..+|..+-. ..+++.+...+.+++..+|..++..||.+...... ....+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~ 92 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF 92 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH
Confidence 4556667799999999999999887643 45677777778999999999999999997642211 23566
Q ss_pred HHHhhh-ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHH
Q 000201 739 PKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 739 ~~l~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.|..+ ++|+++.||..|+.+|+.++..-..+ ....++.+...+.|++..|| .+...|.... -...++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHHHH
Confidence 777765 79999999999999999986432211 24566677788889988898 4566664311 135789
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 896 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~ 896 (1866)
.|...++|.++.+|..|+..+|.+.. .. +...+.|...+.|+++.||..|+.+||.+.. +..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~--~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av 225 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY--DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVL 225 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC--CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHH
Confidence 99999999999999999999998832 12 3577888999999999999999999988432 4678
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhc-cCChhHHhHHHHHHH
Q 000201 897 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 958 (1866)
Q Consensus 897 ~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~-~~~~~vR~~al~~l~ 958 (1866)
|.|++.+.++. .|..++.+||++.. +..+|.+.+.+. +++..++..+...+.
T Consensus 226 ~~Li~~L~~~~---~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKGT---VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCCc---hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88888887643 67778888776543 356777777775 678888887766554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-10 Score=130.88 Aligned_cols=252 Identities=18% Similarity=0.159 Sum_probs=183.3
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
-++.|...|.+++.++|..++..|+.+.. +.+++.+..+++|.++.||..|+++|++++..-. .....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR--CQDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--chHHH
Confidence 45667778899999999999999986653 4677788889999999999999999999874211 13456
Q ss_pred HHHHHHh-hCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 776 VPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 776 v~~L~~~-l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
+|.|... ..|++..|| .++..|......+ ......+++.+...+.|.++.||..++.+++.+..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~---~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------- 157 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKN---PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------- 157 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccc---cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----------
Confidence 7777766 678888888 5777776532111 11133456667777888899999998888876532
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 933 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ 933 (1866)
+..++.|...+.|+++.||..|+.+||.+. . .-+...+.|...+.+. +..+|..++.+|+.+ |. ..
T Consensus 158 -~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~---~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~----~~---~~ 223 (280)
T PRK09687 158 -EAAIPLLINLLKDPNGDVRNWAAFALNSNK--Y---DNPDIREAFVAMLQDK-NEEIRIEAIIGLALR----KD---KR 223 (280)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--C---CCHHHHHHHHHHhcCC-ChHHHHHHHHHHHcc----CC---hh
Confidence 236788888999999999999999999881 1 1245677777777544 456899999988774 22 35
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CCChHHHHHHHHHHH
Q 000201 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGH 999 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~~VR~~a~~al~ 999 (1866)
.+|.+++.+.+++ +|..++.++|.+.. +..+|.+...+. +++..|+..+.+++.
T Consensus 224 av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 224 VLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 6777888887765 56667777776654 246677777775 778888888877764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-10 Score=150.53 Aligned_cols=273 Identities=19% Similarity=0.184 Sum_probs=202.6
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
.++.|.+.|+|++..+|..|+..|+.+.. +..++.|...|+|+++.||.+|+.+|..+++....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 56778889999999999999999997642 35678888999999999999999999988654332
Q ss_pred HHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
.+.+...+.++++.+| .++..|..... . -.+.+.+.+.|.++.+|..|+..++.+- .
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~------~~~~l~~~L~D~d~~VR~~Av~aL~~~~----~-------- 743 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA----G------DAALFAAALGDPDHRVRIEAVRALVSVD----D-------- 743 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc----C------CHHHHHHHhcCCCHHHHHHHHHHHhccc----C--------
Confidence 2456667778888888 46666654211 0 0235667899999999999999888652 2
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
.+.+...+.|+++.||..++.+|+.+...- ...++.|...+.+ .++.+|..++..|+.+.. . ...
T Consensus 744 ---~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~----~--~~~ 808 (897)
T PRK13800 744 ---VESVAGAATDENREVRIAVAKGLATLGAGG-----APAGDAVRALTGD-PDPLVRAAALAALAELGC----P--PDD 808 (897)
T ss_pred ---cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----chhHHHHHHHhcC-CCHHHHHHHHHHHHhcCC----c--chh
Confidence 123567789999999999999999875421 1224556555554 446799999998877532 1 123
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1014 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~ll 1014 (1866)
.+.+...+.++++.||..++.+++.+.. +..++.+...+.|++..||..+..++..+- . -....
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~----~~~a~ 872 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP--G----DPAAR 872 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC--C----CHHHH
Confidence 3457778889999999999999987642 235577888999999999999999987741 1 12245
Q ss_pred HhHhcccCCCchHHHHHHHHHHH
Q 000201 1015 PAVEDGIFNDNWRIRQSSVELLG 1037 (1866)
Q Consensus 1015 p~l~~~l~d~~w~vR~~s~~ll~ 1037 (1866)
+.+...+.|++..||..+.+.|.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66777788899999999888765
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-05 Score=93.94 Aligned_cols=466 Identities=15% Similarity=0.126 Sum_probs=247.3
Q ss_pred hhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcCc----hhc-H-----Hh
Q 000201 589 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRLF----EPY-V-----IQ 657 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~~----~p~-v-----~~ 657 (1866)
++.|+.|-+.|..+-+.. +.++.+.+.+ .+..+..+|++|..=|......-.+.. .|+ + ..
T Consensus 18 ~~~R~~AE~~L~q~~K~p--------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ 89 (1010)
T KOG1991|consen 18 AKERKAAEQQLNQLEKQP--------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAV 89 (1010)
T ss_pred hHHHHHHHHHHHHhhcCC--------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHH
Confidence 677777777777665543 2344444444 333334446655555554443211111 011 0 01
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh----------
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---------- 727 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---------- 727 (1866)
+-..++..+-.....+|..-..++..|...=-+..++.++|.+...|.+++-..-.+|+.+|..+++.-.
T Consensus 90 irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l 169 (1010)
T KOG1991|consen 90 IRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL 169 (1010)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH
Confidence 2233444444447788888899998888876667789999999999999998888899999998886521
Q ss_pred -hhHHhhhcchhHHHhhhccCCChHHHH---HHHHHHHHHHhh-----c-cchhHHhHHHHHHHhhCCCChhHHHHHHHH
Q 000201 728 -QQLSQCLPKIVPKLTEVLTDTHPKVQS---AGQTALQQVGSV-----I-KNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797 (1866)
Q Consensus 728 -~~~~~~l~~iv~~l~~~L~D~~~~VR~---aA~~aL~~l~~~-----i-~~~~i~~lv~~L~~~l~d~~~~vr~al~~L 797 (1866)
..+...+|.|.....+++.+.+-..-. ..++....++-. + .+..+...+..++..++.|-+.-
T Consensus 170 ~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E------- 242 (1010)
T KOG1991|consen 170 GEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE------- 242 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh-------
Confidence 124456677777777788776543322 222222222211 0 11122334444444444432100
Q ss_pred HhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch------------hhhHhhhhHHHHHHh
Q 000201 798 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM------------IPYIGLLLPEVKKVL 865 (1866)
Q Consensus 798 ~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l------------~~~~~~ll~~L~~~l 865 (1866)
-.+ .| |.. .-...=|+.++-|..++..+++..+++... ..|.+.++..+.+.+
T Consensus 243 ----~l~-~d--------~e~--R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l 307 (1010)
T KOG1991|consen 243 ----VLS-LD--------PED--RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKIL 307 (1010)
T ss_pred ----ccc-CC--------hhh--cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 000 001123678888888888888877665321 123444555555544
Q ss_pred cC------CCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHh--------c--c--------cCC-CH----------
Q 000201 866 VD------PIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDA--------L--K--------SDN-SN---------- 909 (1866)
Q Consensus 866 ~d------~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~~--------L--~--------~~~-~~---------- 909 (1866)
.. -.++|-..+...+...+. .. .+.-+-|.+--. + . ++. ++
T Consensus 308 ~~~~~~~yls~rvl~~~l~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 308 EQWRQQLYLSDRVLYYLLNFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 31 112332223322222221 11 111111111100 0 0 000 01
Q ss_pred --HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhc------c--CChhHHhHHHHHHHHhhhhhchhhHhHHHH----H
Q 000201 910 --VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS------H--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ----V 975 (1866)
Q Consensus 910 --~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~------~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~----i 975 (1866)
.-+.++...+-.++..-|.+.++.+++.+.+-+. . .++.-++||+.+++.++..+-+. .||-+. +
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~fl 463 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFL 463 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHH
Confidence 1123555667888888889989888887777665 2 26788899999999999766432 122221 2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCC
Q 000201 976 LPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1055 (1866)
Q Consensus 976 l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~ 1055 (1866)
++.++..+.++.--+|..|+ ..++.+-.
T Consensus 464 v~hVfP~f~s~~g~Lrarac--------------------------------------~vl~~~~~-------------- 491 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARAC--------------------------------------WVLSQFSS-------------- 491 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHH--------------------------------------HHHHHHHh--------------
Confidence 22223333344334444333 33333210
Q ss_pred CCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHHHHhh
Q 000201 1056 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPK---TLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1056 ~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~---~l~~~l~~l~~~L~~~l 1131 (1866)
.++.... ...+.+.....++ +|.+..||-.|+-++..++.+.+. .+++++|.+++.++...
T Consensus 492 ---~df~d~~------------~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 492 ---IDFKDPN------------NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred ---ccCCChH------------HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 0000000 0011222223333 488888999999999999998773 48889999999988776
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccccc
Q 000201 1132 ASSSSERRQVAGRALGELVRKLGERVL 1158 (1866)
Q Consensus 1132 ~~~~~~~R~~A~~~L~~lv~~~~~~~l 1158 (1866)
++-+.+. -..++..++...++.+.
T Consensus 557 ne~End~---Lt~vme~iV~~fseEls 580 (1010)
T KOG1991|consen 557 NEVENDD---LTNVMEKIVCKFSEELS 580 (1010)
T ss_pred HhcchhH---HHHHHHHHHHHHHHhhc
Confidence 6543332 33456666666666543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-05 Score=96.57 Aligned_cols=215 Identities=22% Similarity=0.247 Sum_probs=154.3
Q ss_pred HHHHHHHHHHhHhhhcc---chhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccch-------------hhhhHH
Q 000201 1326 DVQSLAKEAAETVTLVI---DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAP 1389 (1866)
Q Consensus 1326 ~vr~~a~~~l~~l~~~~---~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~-------------~~~~~~ 1389 (1866)
..++.+...+..+.+.. +.+...++...+++.+++ +.+-..+.+++..+....+.. -..++.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 34555555544444422 223345566666666666 334445666666554322111 124556
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHH
Q 000201 1390 NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 1469 (1866)
Q Consensus 1390 ~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp 1469 (1866)
++++.+...+......++..-..+|+.++++.|++.+- ..+..++|
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vll----------------------------------p~~~~LlP 912 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLL----------------------------------PQFPMLLP 912 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhc----------------------------------cchhhHHH
Confidence 77788877777555667777788888888877764311 23456789
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCCC-CCC
Q 000201 1470 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--WQVKSAILSTLSIIIRKGGIA-LKP 1546 (1866)
Q Consensus 1470 ~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~--~~vr~~al~~L~~L~~~~~~~-~~~ 1546 (1866)
.+++++.-.+..+|..+..++..+.... +.-...|+..+++.++.+-.+..+ ..||..|+++|+.|.+..|.. +.+
T Consensus 913 LLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 913 LLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred HHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 9999998889999999999999988776 566778889998888887666432 579999999999999988754 789
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000201 1547 FLPQLQTTFIKCLQDSTRTVRSSAALALGKL 1577 (1866)
Q Consensus 1547 ~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L 1577 (1866)
|-|++++.+.++|+|+.+-||..|..+=+..
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999987665
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-06 Score=103.37 Aligned_cols=658 Identities=17% Similarity=0.185 Sum_probs=327.6
Q ss_pred hhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHH------HHHHhhhcCCc--
Q 000201 293 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD-- 364 (1866)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~~-- 364 (1866)
.+.+...|..+++||+++|+.++++|+... .+++++ +.+++.+-.+..|...+.+.. .+..|......
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e--~q~~y~--l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLE--GQQNYP--LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhc--cCCCch--HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 456888999999999999999999999875 234443 556666666666665555442 12579764433
Q ss_pred -cC----CCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000201 365 -FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437 (1866)
Q Consensus 365 -~~----~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 437 (1866)
+. +.+ ..++...-+.-..++..-.+|+.-+.. -+|+.|++++..|.+... ..| ..+-.|+..+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls-----~~D-----~~~~~gVL~t 149 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLS-----SGD-----FNVINGVLVT 149 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcc-----ccc-----hHHHHHHHHH
Confidence 11 223 344555566667899999999988763 357777777777765431 111 1222333333
Q ss_pred HHHhhh----hcCCCC-hHH----------HHHHHHhhh-----cCCCcHHHHHHHHHHHHHHHHhh-----------cc
Q 000201 438 LHSAAD----VLRTKD-LPV----------IMTFLISRA-----LADTNADVRGRMLNAGIMIIDKH-----------GR 486 (1866)
Q Consensus 438 l~~~~~----~~~~~~-~~~----------~~~fli~~~-----l~d~~~~vr~~~~~a~~~~i~~~-----------g~ 486 (1866)
-..+-. .+.++. +.+ -++-|.... ..+.+......+.....-+.+.+ =.
T Consensus 150 ahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE 229 (960)
T KOG1992|consen 150 AHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE 229 (960)
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 333322 222222 111 111111110 12222221111222111111111 13
Q ss_pred cchhhhHHHHHHhhcCCCCChh-------hhhhHHHHHHHHHHHHhhhhccC-CcchHHHHHHHHHhcCCCcH--HHHHH
Q 000201 487 DNVSLLFPIFENYLNKKASDEE-------KYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSE--AVQRA 556 (1866)
Q Consensus 487 ~~~~~ll~~le~~L~~~~~~~~-------~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~~~l~~~l~~~~~--~v~~~ 556 (1866)
+|.+.-|+.|-++|+...+.-+ .-+.+|..+++...--+..++.. +|.++..+..+...|.+-++ ..-..
T Consensus 230 dnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~L 309 (960)
T KOG1992|consen 230 DNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYL 309 (960)
T ss_pred hhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 5666777777777763222111 11334555555544444334332 23344444444444443322 22222
Q ss_pred HHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHh------hhCcchhhhcchHHHHHHHHhCCCcH
Q 000201 557 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK------GFGISSLKKYGIAATLREGLADRNSA 630 (1866)
Q Consensus 557 ~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~------~~g~~~l~~~~ii~~L~~~i~~~~~~ 630 (1866)
++.++.-+..-... .-+..++..+ +....+..-+. .-..+.+-..+-+.+++.-++..+-.
T Consensus 310 vs~Al~FLt~V~~r-------~~y~~~F~~~------~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvd 376 (960)
T KOG1992|consen 310 VSKALQFLTSVSRR-------PHYAELFEGE------NVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVD 376 (960)
T ss_pred HHHHHHHHHHHHhh-------hhhHhhhcch------HHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcc
Confidence 32222111100000 0011111111 11111111111 11122222334677888888777666
Q ss_pred HHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH-HcCCCCHHH--HHHHHHHHHHHHHhh----------------cHh
Q 000201 631 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQVVAV--REAAECAARAMMSQL----------------SAQ 691 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~-~~~D~~~~V--R~~a~~al~~i~~~l----------------~~~ 691 (1866)
.+|.+|+..++.|++.......+.+...+..++. ..++|+.+- .+.+......++... ..+
T Consensus 377 TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~F 456 (960)
T KOG1992|consen 377 TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDF 456 (960)
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHH
Confidence 7888899989999988765556666655555553 555664433 333444444443321 111
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 769 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-- 769 (1866)
....++|.|...=..+.+-.|.+++.-+..+-...+ ..++..++|.+...|......|-..|+.++..+...-.+
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 225566665553333445555555554332222222 235567888899999998899999999999988754433
Q ss_pred ----------hhHHhHHHHHHHhhCCCC----hhHHHHHHHHHhccccccCCcchhhhHHHHHH----HhhcCC-CHHHH
Q 000201 770 ----------PEIASLVPTLLMGLTDPN----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVH----RGLRER-SAETK 830 (1866)
Q Consensus 770 ----------~~i~~lv~~L~~~l~d~~----~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~----~~l~d~-~~~vr 830 (1866)
|.+..++..|.+.+.-|. ++.-.|+..++.+.- ..--|....+++.+. ...+.+ ++.--
T Consensus 534 ~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~--~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn 611 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQ--SAIIPHAPELLRQLTEIVEEVSKNPSNPQFN 611 (960)
T ss_pred ccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCH--HhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence 222334444555555443 333333333322110 000012222223222 222332 34444
Q ss_pred HHHHHHHHHHhhhcC--CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCC
Q 000201 831 KKAAQIVGNMCSLVT--EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 908 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~--~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~ 908 (1866)
....+.++.+..... ++..+..+...++|.+...+.....+.--.+...++.+++..+.. .++-...++..+.++.-
T Consensus 612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~-ip~~~~~l~~~lLsp~l 690 (960)
T KOG1992|consen 612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGT-IPDSYSPLFPPLLSPNL 690 (960)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHhcCHHH
Confidence 555556665554322 223455677788888888887655555556777888888866552 22212222333333333
Q ss_pred HHHHHHHHHHHHHHHHHh---Chh------HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc-hhhHhHHHHHHHH
Q 000201 909 NVERSGAAQGLSEVLAAL---GTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPA 978 (1866)
Q Consensus 909 ~~~R~~a~~~L~~l~~~~---g~~------~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ 978 (1866)
+ .|.+-+-++-.+..++ |.. .+..++..+-+...++... ..++.++..+...++ ....||+.++...
T Consensus 691 W-~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~l 767 (960)
T KOG1992|consen 691 W-KRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGL 767 (960)
T ss_pred H-hhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHH
Confidence 3 4444333333333322 322 2233333333333333221 235666776666665 4568899999999
Q ss_pred HHhhccCC
Q 000201 979 ILDGLADE 986 (1866)
Q Consensus 979 ll~~l~d~ 986 (1866)
+++.+...
T Consensus 768 lf~Rlqns 775 (960)
T KOG1992|consen 768 LFQRLQNS 775 (960)
T ss_pred HHHHHhcc
Confidence 99888754
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-06 Score=111.79 Aligned_cols=395 Identities=16% Similarity=0.162 Sum_probs=246.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-hhcchhH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 739 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~ 739 (1866)
++.++.+.+.+.-+.+.+++..++....+... ..+.+.+..+|.+++..+|..++..|+.++......... .=+.+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 66777777777777888999999998888774 888999999999999999999999999998765442221 1247899
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHH
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 819 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~ 819 (1866)
.+..++.|++..|.+.|..+|..+++.- +.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998632 22222211 0 1123334
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh--hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC-CCCh--hh
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 894 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~--~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g-~~~~--~~ 894 (1866)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+.+.-+|..+...+..++..-. -+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777762 2 23333333 378888888889899999999999999998321 1122 24
Q ss_pred HHHHHHHhcccCCCHH-----HHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhh-
Q 000201 895 LVSWLLDALKSDNSNV-----ERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL- 964 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~-----~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~- 964 (1866)
+++.|.+.+.+..... .-.+.+...+.++.. .+. .++.++..+.+...+.++..+..|+.++|.++...
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6677776665433221 111233334555443 222 33556666677778889999999999999998655
Q ss_pred chhh-----HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 965 GVQF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 965 g~~f-----~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
|..+ .+-+..++..+.........++|..+++++..+.........+.++
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~------------------------- 377 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL------------------------- 377 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-------------------------
Confidence 3222 1223334444444444455566666666666655322111100000
Q ss_pred HHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHh
Q 000201 1040 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI 1119 (1866)
Q Consensus 1040 l~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~ 1119 (1866)
...+...+.++...... .++...+.+-+++|.++..+|..++.. ||..+.+
T Consensus 378 -------------------------~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i 428 (503)
T PF10508_consen 378 -------------------------SITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREI 428 (503)
T ss_pred -------------------------HHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 01112223333222221 222234566688999999999999964 7776664
Q ss_pred H--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1120 M--PVLMNTLISSLASSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1120 l--~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv 1150 (1866)
. |.++..++.+-.+.+.+.+..=..++..++
T Consensus 429 ~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 429 CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 3 556666655544555555444444444444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=0.00015 Score=89.55 Aligned_cols=260 Identities=15% Similarity=0.154 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHH--HHHHHHHHHHhhccchhH------HhHHHHHHHh
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS--AGQTALQQVGSVIKNPEI------ASLVPTLLMG 782 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~--aA~~aL~~l~~~i~~~~i------~~lv~~L~~~ 782 (1866)
.|..-|+.+.-.+..-++.+...+++++...+.+|.+..+..|. .++.|+.-+..+.+.+.. +.++..+.+.
T Consensus 263 lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~ 342 (960)
T KOG1992|consen 263 LKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEK 342 (960)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHh
Confidence 34555565555555567777888888888888888876655543 455566666555544432 3455555555
Q ss_pred hCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCcchhhhHhhhhHHH
Q 000201 783 LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 861 (1866)
Q Consensus 783 l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~v-r~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L 861 (1866)
..=|+-..|..-+.+- -..-+..+.+-++..+.++ |+.|++.+..++..... .+.+.....+..+
T Consensus 343 VvlpN~~lR~eDeElF------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~--~vt~v~~~~v~~~ 408 (960)
T KOG1992|consen 343 VVLPNLILREEDEELF------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG--QVTGVFSSEVQRL 408 (960)
T ss_pred hcccccccchhhHHHh------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 5445443442222221 1123455666676666665 56788999999987632 2333333344443
Q ss_pred HH-HhcC--CCHhHHHHHHHHHHHHHhhcCCC---------------Ch-hhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 862 KK-VLVD--PIPEVRSVAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 862 ~~-~l~d--~~~~vR~~a~~aL~~l~~~~g~~---------------~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
.. ...+ .+|.-+..+...+.+++...+.. +| ..++|.|.+.=.. ..+..+..++.-+-..
T Consensus 409 l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn-~~pilka~aIKy~~~F 487 (960)
T KOG1992|consen 409 LDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN-EFPILKADAIKYIYTF 487 (960)
T ss_pred HHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc-cccchhhcccceeeee
Confidence 33 2333 46888888888888888764321 11 1233433321001 1122333444333334
Q ss_pred HHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch---------hhHhHHHHHHHHHHhhccC
Q 000201 923 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLAD 985 (1866)
Q Consensus 923 ~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~---------~f~~~l~~il~~ll~~l~d 985 (1866)
-+.+|...+-.++|.++..+..+.+-|...+..++..+....++ .+.||+..++..+++.++-
T Consensus 488 R~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 488 RNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred cccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 45677778888999999999999999999999988877655443 5567888887777776653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-08 Score=107.89 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=211.8
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhh---hCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 648 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~---~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~ 648 (1866)
+...++++.+.|++ ++.+....|.+-+-.++.. .++..+...+++|.+.+.+.+.....-.-.|..++..++.+..
T Consensus 69 ~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 34455777777764 4456666777766665552 2234444457888888887544434455568888889988766
Q ss_pred cCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---hH-HhHHHHHHhhcCCCCh--hhHHHHHHHHHH
Q 000201 649 RLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGA 721 (1866)
Q Consensus 649 ~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~v-~~llp~L~~~L~~~~w--~~r~~a~~~L~~ 721 (1866)
..-.-.+ ...+|.+..++.+++..||+.+.||++.|+..-+.. -+ -..+.+++..+.++.. ..-+.+.+.|++
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 4333333 257899999999999999999999999998754331 12 3456667766665544 445668899999
Q ss_pred HHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH-----hHHHHHHHhhCCCChhHH-HHH
Q 000201 722 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-----SLVPTLLMGLTDPNDHTK-YSL 794 (1866)
Q Consensus 722 l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~-----~lv~~L~~~l~d~~~~vr-~al 794 (1866)
++.+. |.--...+...+|.|.+++...+++|-.-||||+..+...- ++.++ .+.+.|.+++.+|+..+. -++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 99884 32233455677888999999889999999999999887643 33333 345578888888877665 466
Q ss_pred HHHHhccccccCCcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh-hhhHHHHHHhcCCCHh
Q 000201 795 DILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPE 871 (1866)
Q Consensus 795 ~~L~~~~~~~~~~~~--~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~-~ll~~L~~~l~d~~~~ 871 (1866)
..+............ .-.-.++.+...|.++...+|+.+|..++|+.. +..+.+...++ .++|.|.+++......
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k 384 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYK 384 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 666552111111100 112345666666777777999999999999876 44344443333 5889999999998999
Q ss_pred HHHHHHHHHHHHHh
Q 000201 872 VRSVAARAIGSLIR 885 (1866)
Q Consensus 872 vR~~a~~aL~~l~~ 885 (1866)
+|+.|+.++.....
T Consensus 385 ~kKEACWAisNats 398 (526)
T COG5064 385 IKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988765
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=109.14 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=203.4
Q ss_pred HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--
Q 000201 694 KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-- 769 (1866)
..++|.+++.|++ ..---+..|.++|.+++.+...+..... ...+|.++++|.+++..||..++|||+.++.....
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 4578888888854 4445677899999999999877643222 26789999999999999999999999999853321
Q ss_pred hhH--HhHHHHHHHhhCCCCh---hHHHHHHHHHhc--cccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 770 PEI--ASLVPTLLMGLTDPND---HTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 770 ~~i--~~lv~~L~~~l~d~~~---~vr~al~~L~~~--~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
.++ -..+..++..+..... -+|.+--+|... .-.+..+.......+|+|.+++...++++-..||.+++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111 1233344444433322 245444444442 112233445667789999999999999999999999999876
Q ss_pred hcCCCcchhhhHh-hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC----hhhHHHHHHHhcccCCCHHHHHHHHH
Q 000201 843 LVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQ 917 (1866)
Q Consensus 843 ~l~~~~~l~~~~~-~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~----~~~l~~~L~~~L~~~~~~~~R~~a~~ 917 (1866)
. ..+.+...++ .+.+.|.++|.+++..++.-|.+.+|.++....... --..++.+...|.+.++ ..|..+|+
T Consensus 273 g--~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCW 349 (526)
T COG5064 273 G--PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACW 349 (526)
T ss_pred C--cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhhe
Confidence 3 2222222332 367789999999999999999999999987544321 11345555555555544 58999999
Q ss_pred HHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc--hhhHhHH--HHHHHHHHhhccCCChH
Q 000201 918 GLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYL--QQVLPAILDGLADENES 989 (1866)
Q Consensus 918 ~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g--~~f~~~l--~~il~~ll~~l~d~~~~ 989 (1866)
.++.+..+-... .+ ..++|.++..+...+...|..+++++.......- ++.-.|+ ..++.++..++.-.+..
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 999876644333 11 3678999999988899999999888876554321 2333444 23555555555544444
Q ss_pred HHHHHHHHHHHHHH
Q 000201 990 VRDAALGAGHVLVE 1003 (1866)
Q Consensus 990 VR~~a~~al~~i~~ 1003 (1866)
+-+.+++++..+.+
T Consensus 430 iiev~LD~~eniLk 443 (526)
T COG5064 430 IIEVALDAIENILK 443 (526)
T ss_pred chhhhHHHHHHHHh
Confidence 55555666555543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-05 Score=93.15 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=169.1
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 734 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l 734 (1866)
...+-+-++.+++...+.||+.|.-.+-.++-.++ +.+...+|.|.+.|+|+++.+..+|+..+..++...|+...
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 34677788889999999999999998888877664 56788999999999999999999999999999998887643
Q ss_pred cchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-----chhH-HhHHHHHHHhhCCCChh-H-HHHHHHHHhcccccc-
Q 000201 735 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----NPEI-ASLVPTLLMGLTDPNDH-T-KYSLDILLQTTFVNT- 805 (1866)
Q Consensus 735 ~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-----~~~i-~~lv~~L~~~l~d~~~~-v-r~al~~L~~~~~~~~- 805 (1866)
++-|.+.+++.++.. .|.|-.+.+.++ +|.+ ..++|.+.+.+...... + =+|+.++++......
T Consensus 218 -~LAP~ffkllttSsN------NWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSN------NWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred -cccHHHHHHHhccCC------CeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 556777777765432 233333333332 3444 67888888887655421 2 267777776433332
Q ss_pred -CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 806 -VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 806 -~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
.+..+....+.-|.-.+.|.+++.|.-++-+++.++. +.++.+..+. ..+..+|.|.++.+|..|...+-.++
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHh
Confidence 4445666777778888899999999999999999887 4544444443 45667889999999988888777766
Q ss_pred hhcCCCChhhHHHHHHHhccc
Q 000201 885 RGMGEENFPDLVSWLLDALKS 905 (1866)
Q Consensus 885 ~~~g~~~~~~l~~~L~~~L~~ 905 (1866)
. ++.+.+++..|+..+..
T Consensus 365 s---kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 365 S---KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred h---hhhHHHHHHHHHHHHHh
Confidence 5 45566777777776543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.0011 Score=83.59 Aligned_cols=212 Identities=19% Similarity=0.205 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------cC----------C-hh
Q 000201 1524 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-------ST----------R-VD 1585 (1866)
Q Consensus 1524 ~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-------~~----------~-~~ 1585 (1866)
+.+..++..+..+.+..-..-.|---.+-..|+.+|+++ ++-..+++++.-++.- .+ | +.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 445556666655544332222233344555566666653 3445566666555321 01 1 34
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---hh
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME---DG 1662 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~---~~ 1662 (1866)
.++|.++..+++.....+...+.+|..++.+.+..+.-+..+.++++|.+.+.-+|-.+|.....++..+....+ ++
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 567888888887778899999999999999998876668899999999999999999999999999988765443 24
Q ss_pred HHHHHHHHHHhccCCCC---cchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1663 QLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1663 ~~~~~l~~ll~~~~~~~---~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
++..+++.++....+.+ ..+|..+..+|+++.+.-|...+. ++.+.++..+...+.|++--+|+-|+.+-+.+-.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 57788888887655555 567888899999999988887654 4788999999999999999999999988765543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-05 Score=95.49 Aligned_cols=462 Identities=16% Similarity=0.137 Sum_probs=270.3
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH-hHHHH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPL 661 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~-~llp~ 661 (1866)
|+++++......|.+-+..++.. |.+ ...++|.+.+++..++. ..+... +-+|...... .|-+. --+..
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~d---vS~~Fp~VVKNVaskn~-EVKkLV---yvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKD---VSLLFPAVVKNVASKNI-EVKKLV---YVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCc---HHHHHHHHHHHhhccCH-HHHHHH---HHHHHHHhhc--CCCceeeeHHH
Confidence 34455445666666665544432 222 23578888888877554 444322 2233332221 11111 12345
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
+-+.++|+++-+|-.|..++..|-- +--.+.++-.+.+...|.+..+|+.|+.+|-.+....+++-. +++..+
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~----qL~e~I 185 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD----QLEEVI 185 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH----HHHHHH
Confidence 6678899999999988887766521 112244555556677899999999999999998887776643 556667
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChh---------HHHHHHHHHhc------------
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH---------TKYSLDILLQT------------ 800 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~---------vr~al~~L~~~------------ 800 (1866)
-.+|.|..|.|-.+|+.|...++..-- .-+..-...+++.+.|-++- +|.|-..+..-
T Consensus 186 ~~LLaD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 186 KKLLADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred HHHhcCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 779999999999999999887763110 01122222233333322210 11111111110
Q ss_pred ------cc----cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 801 ------TF----VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 801 ------~~----~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.. .++...+.+..++.....++.++++.|-..+++++..++... + ...+...|..+|.. +.
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~----~~~i~kaLvrLLrs-~~ 335 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----Q----VTKIAKALVRLLRS-NR 335 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----H----HHHHHHHHHHHHhc-CC
Confidence 00 111223456667777777888899999999998888776521 1 23456666666654 56
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhH
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV 949 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~-~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~v 949 (1866)
.+|.....++..++..... . +.|++....- +.....+..--++.|+.++..- ....+++.+.....+.+..+
T Consensus 336 ~vqyvvL~nIa~~s~~~~~-l---F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es---ni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 336 EVQYVVLQNIATISIKRPT-L---FEPHLKSFFVRSSDPTQVKILKLEILSNLANES---NISEILRELQTYIKSSDRSF 408 (968)
T ss_pred cchhhhHHHHHHHHhcchh-h---hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCchhH
Confidence 8899999999998875432 2 3344433322 2223333334445556555433 34567777788888887778
Q ss_pred HhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCC-chHH
Q 000201 950 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRI 1028 (1866)
Q Consensus 950 R~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~-~w~v 1028 (1866)
-..++.++|..+...+. .-+.++..++..++..++.|-..+.-.++.+++.-+.+... ++-.+...++.. -..-
T Consensus 409 aa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-ILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-HHHHHHHHhhhhhhhhh
Confidence 78888889888887775 44567777888888778888777877788777654433211 222222222111 1224
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000201 1029 RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108 (1866)
Q Consensus 1029 R~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l 1108 (1866)
|...++++|+....++. .-.+++..+.....|+...||-..+.+-..+
T Consensus 484 RA~IiWLige~~e~vpr--------------------------------i~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVPR--------------------------------IAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred hceeeeeehhhhhhcch--------------------------------hchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 55555666655433221 1123444555556677777877777765555
Q ss_pred hhcChhh
Q 000201 1109 VANTPKT 1115 (1866)
Q Consensus 1109 ~~~~p~~ 1115 (1866)
.......
T Consensus 532 yl~~~~~ 538 (968)
T KOG1060|consen 532 YLTNIDQ 538 (968)
T ss_pred eEechhh
Confidence 4433433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=109.27 Aligned_cols=183 Identities=26% Similarity=0.327 Sum_probs=131.8
Q ss_pred HcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH-------HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH
Q 000201 584 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT-------LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 584 ~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~-------L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~ 656 (1866)
..+.+|..|..|...|..++.+...... ...+++. +...+.+.. ...-..|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4677899999999999999987611111 1223333 333333322 234456889999999999999999999
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh---hhHHh-
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---~~~~~- 732 (1866)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+..++.+++|.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999999877 1113347788889999999999999999999998877 33433
Q ss_pred -hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 733 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 733 -~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
.++.+.+.+..++.|++++||.+|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3578999999999999999999999999999877654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-06 Score=106.74 Aligned_cols=347 Identities=22% Similarity=0.244 Sum_probs=228.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc-hH
Q 000201 1471 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF-LP 1549 (1866)
Q Consensus 1471 l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~-lp 1549 (1866)
+...+.+.+.++-..++..|..+.....+..+ .+.+.+.|.+.+.. .++.||..++..++.+.+.-....... -+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 56677777777778888889998887655554 45566667888876 478999999999988775433211111 15
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhH-----HHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHH
Q 000201 1550 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 1624 (1866)
Q Consensus 1550 ~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~-----l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~ 1624 (1866)
.+.+.++.++.+++..|...|+.+|..+....+..+.+ +..|...+..++..+|..++..+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 68889999999999999999999999998766655555 6667777766677889888888877765443322 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh-H-HH--HHHHHHHhccCC--CCcchh----hhHHHHHHH
Q 000201 1625 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG-Q-LA--DLLQELLNLASS--PSWAAR----HGSVLVFAT 1692 (1866)
Q Consensus 1625 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~-~-~~--~~l~~ll~~~~~--~~~~~r----~~~~~~L~~ 1692 (1866)
+.. -+++.+...+.++|--++..+.+++..++. .+.. . +. .+++.+.+.... .+...+ -+.+..+..
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 222 367777777888777889999999999997 3321 1 11 133333332211 111011 112223344
Q ss_pred HHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcC---CCChhhHHHHHHHHHhhcCCCCHHH
Q 000201 1693 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSEV 1769 (1866)
Q Consensus 1693 ~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~v 1769 (1866)
+....|..++ ...+.+...+.....+.++..+..|+.++|.+........ ..........+..+-........++
T Consensus 276 la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 276 LARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred HHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4444555543 2446677788888899999999999999998764322110 0011234556677777777888999
Q ss_pred HHHHHHHHHHHHhhCcchhhhhHhhHHHH-------------HHhhhccCcchhhhhHHHHHHHhhcccc
Q 000201 1770 RRRALSALKSVAKANPSAIMVHVALFGPA-------------LAECLKDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1770 R~~a~~~l~~~a~~~~~~~~~~l~~l~p~-------------l~~~~~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
|..++.++..+-...++.-...+..+... +.+.++.+=..+|.|+.+-+.++..=+-
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 99999999999765544222222233333 3344455557799999998888875443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-05 Score=95.76 Aligned_cols=448 Identities=17% Similarity=0.153 Sum_probs=268.6
Q ss_pred HHHhhcCCCChhhHHHHHHHH-HHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLL-GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L-~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
.|...|++..-+.+..|+.-| +-|+.+.. . ..++|.+++-....+++|++-.---|-++++.-+|-.+ --+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc--H----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 455666777777777777654 44555432 2 35677777778888999999999888888875433211 1257
Q ss_pred HHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHH----HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 778 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI----VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~----L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
++.+.+.|||.-+| .|+..+.++. +..+.|+ +.+...|.++.||+.|+-++-.+... ++ .
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR---------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL--d~----e 176 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR---------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL--DP----E 176 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--Ch----h
Confidence 88999999999999 5888887632 2334444 45667889999999999999998873 21 2
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh------
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL------ 926 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~------ 926 (1866)
+.+++...+..+|.|..+-|--.|+.++..++-.-= +.+..-...+.+.+.+-+++ -+.-.+..|...++.-
T Consensus 177 ~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 177 QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCccc
Confidence 445899999999999999998888888877664100 01112222333444333333 1222233333333211
Q ss_pred --------C--------------h----hHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHH
Q 000201 927 --------G--------------T----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 980 (1866)
Q Consensus 927 --------g--------------~----~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll 980 (1866)
| + .-.+.++......+.+.++.|--++.+++..++... -...|..+++
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLv 328 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALV 328 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHH
Confidence 0 0 012234444444566778888777888877776543 2344666677
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1058 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d--~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed 1058 (1866)
..+.. +..++...+..+..+...- -..+.|.+.+..-- +...++.--++.+..++..
T Consensus 329 rLLrs-~~~vqyvvL~nIa~~s~~~----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~e---------------- 387 (968)
T KOG1060|consen 329 RLLRS-NREVQYVVLQNIATISIKR----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANE---------------- 387 (968)
T ss_pred HHHhc-CCcchhhhHHHHHHHHhcc----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhh----------------
Confidence 76543 3556666666655554321 12355666554311 1122333333444443311
Q ss_pred CCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHH
Q 000201 1059 EGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1138 (1866)
Q Consensus 1059 ~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~ 1138 (1866)
.....++..+-....+.+..+-.+|++.++..+.+.. .+-++++..|+..+.+.++.+
T Consensus 388 ------------------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~V 445 (968)
T KOG1060|consen 388 ------------------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELV 445 (968)
T ss_pred ------------------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchh
Confidence 1112334444334445445677888888888776544 345677888888888888888
Q ss_pred HHHHHHHHHHHHHHhccccccchHHHHhcccCC-CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHH
Q 000201 1139 RQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217 (1866)
Q Consensus 1139 R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~ 1217 (1866)
-..+...+..+++.-+.... .++..+.+.+.. ..+..|.+.+|.+++..... ....+.++..+.+.+.+..++
T Consensus 446 v~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ARA~IiWLige~~e~v-----pri~PDVLR~laksFs~E~~e 519 (968)
T KOG1060|consen 446 VAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPAARAGIIWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDE 519 (968)
T ss_pred HHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc-----chhchHHHHHHHHhhccccch
Confidence 88888888888876443321 233333333332 24556777777777654322 223355556666677888888
Q ss_pred HHHHHHHH
Q 000201 1218 VRESAGLA 1225 (1866)
Q Consensus 1218 vr~~A~~a 1225 (1866)
|+-.....
T Consensus 520 vKlQILnL 527 (968)
T KOG1060|consen 520 VKLQILNL 527 (968)
T ss_pred hhHHHHHh
Confidence 88765543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-06 Score=111.59 Aligned_cols=295 Identities=18% Similarity=0.194 Sum_probs=193.5
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
+++.+...++.-+....+..|+..+..++..... +..+..++|-++.++.|+...||-+|..++..+...+.+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~--- 497 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP--- 497 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC---
Confidence 3444444444434445556666666666665543 44566777777777778888888777777776655332210
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+..-.-.-.-|+|.|..++.| ....||-+-+.+|+.+++... .+..
T Consensus 498 -------------------------------~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 498 -------------------------------PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -------------------------------cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 111011112467777788888 667788888888888886432 1222
Q ss_pred HHHHHHH--hhCCCChhHH------HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000201 775 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846 (1866)
Q Consensus 775 lv~~L~~--~l~d~~~~vr------~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~ 846 (1866)
+...+-. .+++|+.... .-+..| ...+-..+..++.|..+-||+...+.+..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2345543110 011111 112233445567788889999999999999987766
Q ss_pred CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 847 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 847 ~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
.+ --+.|++.|...|+|.+|..|.+-+..|..++-.+|.... +.++|.|.+.|.+.++. +-..++.++..+++.
T Consensus 612 ~k----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EK----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKL 686 (1431)
T ss_pred cc----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHh
Confidence 32 2356889999999999999999988888888888887633 45788888888766654 777888888888764
Q ss_pred hC--hhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 926 LG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 926 ~g--~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
-- ..+..+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 32 235567777777788899999999999999998888774
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00037 Score=89.79 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=106.4
Q ss_pred HHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCch-hHHHHHH
Q 000201 1292 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSA 1370 (1866)
Q Consensus 1292 ~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~-~vR~~a~ 1370 (1866)
..+.+++-.+|..+.+ +-+.+|.++.++...+..+|..+..|++.+......+....+++.++.++.+.+. ..|+.+.
T Consensus 798 ~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~ 876 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGAD 876 (1549)
T ss_pred HHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHH
Confidence 3445555556777777 7778899999999999999999999999998866556667777777777776544 4466777
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1371 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1371 ~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
..+..+.......+.+|.+-++..|+..+.|....||.+|..++..++...+-
T Consensus 877 e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 877 ELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 77888888778888899999999999999999999999999999999986654
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0027 Score=79.96 Aligned_cols=253 Identities=23% Similarity=0.173 Sum_probs=157.6
Q ss_pred CchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchh--------cHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDNQASIRRSSAYLIGY 1375 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~ 1375 (1866)
-+.+.++.|+..++....+.+.++-....+++..++. ++.+ -.+.++..+... .++|.+-..+-.++..
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEE 599 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 3667788888888888877777887778888877776 2221 123333333333 3446665566666666
Q ss_pred HHhhccchhhhhHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCC
Q 000201 1376 FYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 1451 (1866)
Q Consensus 1376 l~~~~~~~~~~~~~~il~~L~~ll~d~~----~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~ 1451 (1866)
++. ....+.++....++.++..++-++ .....-|...|..++++.+.+.-..++
T Consensus 600 l~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~--------------------- 657 (1005)
T KOG2274|consen 600 LLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI--------------------- 657 (1005)
T ss_pred HHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH---------------------
Confidence 654 233455666777888888776544 455666777777777766654211111
Q ss_pred ccccCCcCCCCCccccHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcChhhhhhh------hhhhhHHHHHHhcCCCCHH
Q 000201 1452 PILIPGFCLPKALQPLLPIFLQG-LISGSAELREQAALGLGELIEVTSEQSLKEF------VIPITGPLIRIIGDRFPWQ 1524 (1866)
Q Consensus 1452 ~~~l~g~~~~~~l~~ilp~l~~~-L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~------v~~i~~~Li~~l~~~~~~~ 1524 (1866)
...+|.+.++ +.+++.+.-+.+-+|+..++..+.++-..-+ +-.++..+-+.|..+.+..
T Consensus 658 -------------~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds 724 (1005)
T KOG2274|consen 658 -------------CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDS 724 (1005)
T ss_pred -------------HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchh
Confidence 1123444433 4456677778888899888877522211111 1234455556665543333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc
Q 000201 1525 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 1596 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~ 1596 (1866)
.-..+-..+..|+.+.|..+.|-+.++++.+++-+... ...+-..-..++++|.. +.+++++..|.+...
T Consensus 725 ~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL~Slp~ 795 (1005)
T KOG2274|consen 725 AAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFLSSLPG 795 (1005)
T ss_pred HHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHHHhCCC
Confidence 33344455667778888888899999999888877665 55666666777777644 778899988888443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=106.36 Aligned_cols=200 Identities=25% Similarity=0.350 Sum_probs=139.5
Q ss_pred hHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCC
Q 000201 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092 (1866)
Q Consensus 1013 llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D 1092 (1866)
+.+.++....+.+|..|..+++-+..++..-. ..+ ....+.+.+ ..++..+.....|
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~-----------~~~-------~~~~~~~~l-----~~~~~~i~~~l~d 64 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNA-----------PED-------FPPDFVECL-----RQLLDAIIKQLSD 64 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----------------------HHHHHHH-----H---HHHHH-S-H
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCC-----------ccc-------cHHHHHHHH-----HHhHHHHHHHHhh
Confidence 44445444567899999999999988875420 000 001122222 2344566667788
Q ss_pred CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccch-HHHHhcccCC
Q 000201 1093 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLKD 1171 (1866)
Q Consensus 1093 ~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~d 1171 (1866)
....|-..|+.+++.++...+..+.++++.+++.+++.++++...+|..|..+|..++...+ ..+.+ .+.+..+..+
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKS 142 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhC
Confidence 88889999999999999998888999999999999999999999999999999999998766 23455 6777788889
Q ss_pred CCccchhhHHHHHHHHHHhhc--hhhHH--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000201 1172 PSASRRQGVCIGLSEVMASAG--KSQLL--SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 1237 (1866)
Q Consensus 1172 ~~~~vr~~a~~~L~~li~~~~--~~~l~--~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~ 1237 (1866)
.++.+|..++.++..++...+ ...+. ..++.+.+.+.+.+.|.+++||+.|..++..++...|..+
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999999999988877 23332 2458899999999999999999999999999988877643
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-05 Score=93.33 Aligned_cols=428 Identities=16% Similarity=0.177 Sum_probs=239.5
Q ss_pred HhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH
Q 000201 1309 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 1388 (1866)
Q Consensus 1309 l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 1388 (1866)
+--+.+.+.+-+++.+.-+...|+.+++.++ +.+-.+.+.|.+.+.+++.++.+|.-|+.|...+....+.-..
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e--- 178 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE--- 178 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH---
Confidence 3345566666777778888888888888775 4566788889999999999999999999999988876654433
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc------chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCC
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 1462 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~ 1462 (1866)
.++.....++.+.+..|..++...+..+++..+. +..+.++..+++..... ....+.+.|.+
T Consensus 179 -~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~--------yspeydv~gi~--- 246 (866)
T KOG1062|consen 179 -HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG--------YSPEYDVHGIS--- 246 (866)
T ss_pred -HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCccCccCCC---
Confidence 4455556677888888887777777777776442 34445555555443321 11114455544
Q ss_pred CccccHHH----HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhh-HHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000201 1463 ALQPLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT-GPLIRIIGDRFPWQVKSAILSTLSIII 1537 (1866)
Q Consensus 1463 ~l~~ilp~----l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~-~~Li~~l~~~~~~~vr~~al~~L~~L~ 1537 (1866)
.|++.+ ++..+..++++..+.-...|+.++..+... +..=..|+ ..+..+..=+.+...|..|.++||.++
T Consensus 247 --dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 247 --DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred --chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 233332 334556667766666677778887766311 11101111 111111111234556666666666655
Q ss_pred HhcCCCCC-----------C----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhH
Q 000201 1538 RKGGIALK-----------P----FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 1602 (1866)
Q Consensus 1538 ~~~~~~~~-----------~----~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~v 1602 (1866)
..-...++ + -+.+=..+++.||+|++..+|.+|...+-.|.. ..++..++.+|+.-+...+.+.
T Consensus 323 ~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 323 LNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDEDF 401 (866)
T ss_pred cCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccHHH
Confidence 42221111 1 112335589999999999999999998877754 4678899999999998778888
Q ss_pred HHHHHHHHHHHHHhc------------------CccccHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcChhH
Q 000201 1603 REAILTALKGVLKHA------------------GKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQ 1663 (1866)
Q Consensus 1603 r~~~l~aL~~vi~~~------------------~~~l~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~l~~L~~~~~~~~ 1663 (1866)
+..+..-+.++..+. |.-+.+.....++.++.+... .++..+++.+..+..........+.
T Consensus 402 k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~ 481 (866)
T KOG1062|consen 402 KADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEP 481 (866)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 777766666655544 444444444444444444322 1223333333322222111111111
Q ss_pred HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhhhh
Q 000201 1664 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQI 1741 (1866)
Q Consensus 1664 ~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~--~~~~r~~a~~alg~ll~~~~ 1741 (1866)
+ -....|.- -...-+.+.-..+..|..+.. ..++..+...+.+. +..++..|+.|+-++-....
T Consensus 482 l----~qVa~W~I------GEYGdlll~~~~~~~p~~vte----sdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 482 L----LQVASWCI------GEYGDLLLDGANEEEPIKVTE----SDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred H----HHHHHHHh------hhhhHHhhcCccccCCCcCCH----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 1 11112211 111111222222233433322 33444444333322 36788888888888766543
Q ss_pred hcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000201 1742 QSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 1780 (1866)
Q Consensus 1742 ~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~ 1780 (1866)
. +.+.+..++..+.. +-+.+.++-|..-=..+
T Consensus 548 s----~~~ri~~lI~~~~~---s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 548 S----SSERIKQLISSYKS---SLDTELQQRAVEYNALF 579 (866)
T ss_pred c----cHHHHHHHHHHhcc---cccHHHHHHHHHHHHHH
Confidence 2 22344555554443 45778888776543333
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-06 Score=94.63 Aligned_cols=341 Identities=16% Similarity=0.121 Sum_probs=217.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-Hh--HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH-hh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL--VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~--llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~-~~ 733 (1866)
....++..+...+..+..++.++++.++-+....++ .. =+..++..+..+.-.+|..++.++.+++........ .+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhh
Confidence 444555567788888999999999988876665543 11 123344444455556677777777777765333221 12
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH---HhHHHHHHHhhCCCChhHHH-HHHHHHhccc---cccC
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLTDPNDHTKY-SLDILLQTTF---VNTV 806 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i---~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~---~~~~ 806 (1866)
. .-+..+.++-+..+..||..+..+|-.+...-.+... ..-+|.|...+...+..+++ |...+..... ....
T Consensus 166 s-GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 S-GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred c-cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2 3333456677778899999999999988765444321 45688888888877777773 4444433211 1111
Q ss_pred CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 807 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 807 ~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
-...-+.++|.+...+.+.+.+++..|.-++++++.- ..-...-.-..-+|.+.++++++.-..-...+.|+..++-.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1223456899999999999999999999999999862 21111111123568888888887766656667777666543
Q ss_pred cCCCC---hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHhHHHHHHHH
Q 000201 887 MGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKY 959 (1866)
Q Consensus 887 ~g~~~---~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~ 959 (1866)
-+.+. -..++..|...|...++...+..+...|-.++...... .. ..-+|.++..+.+..-.+++..-.||..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 33221 12345556666665555556777777777766543322 11 2456888888888777777766666666
Q ss_pred hhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 960 LPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 960 L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
++-.- .+..++ ..++|.++....+.+++||.++..|+..+..
T Consensus 403 Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 55332 222233 3578888888889999999999888776554
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0018 Score=80.92 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HhccCChhhHHHHHHHHhc
Q 000201 1519 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQ 1596 (1866)
Q Consensus 1519 ~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~L~~~l~ 1596 (1866)
..+++.+|..+.-+|+.++-.-+.-. ..++|.|++-|... ...+|+...-++|.+ +.+...++.|+|.+-..+.
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLC 1016 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhc
Confidence 33577889999999998876655433 34566677777665 568999999999999 4566778999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhcCccccHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh
Q 000201 1597 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRV-YSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661 (1866)
Q Consensus 1597 ~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i-~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~ 1661 (1866)
++++-+|.-.+--|..+++..-- .....+ +.++.. +-+.++.+|+-+-.|++.+...-.+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~v----Kw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIV----KWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhh----hcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999888888864321 122222 233333 4567899999999999998765443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8e-07 Score=112.81 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-------hhhHHHHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-------DEAPTLVSRLLDQLM 584 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-------~~~~~~l~~ll~~L~ 584 (1866)
..|.+|++++..++.+.+.+. +++.+++-++-.+.++..+||..+...+..++.... .-+++++-..+..|.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~-~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEV-KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHH-HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 467789999999999887654 688999999999999999999998887655544332 136788877788887
Q ss_pred cC-CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhC-cCchhc----HHh
Q 000201 585 KS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLG-RLFEPY----VIQ 657 (1866)
Q Consensus 585 ~~-~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~-i~~~~~~~~r~~al~al~~L~~~l~-~~~~p~----v~~ 657 (1866)
.+ ...-+|..-|.+|+.+++.. .+.......+..+ +.+..+.. +.+ ..++.+ +..
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse--------------t~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE--------------TAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc--------------cccccccchHHHHHHHH
Confidence 76 44468999999999998753 1111111222222 11111110 011 011222 222
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh-HHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-~~~~l~ 735 (1866)
+-.....++.|+.+.||.+-.+.+..++..++...- +.+|+.|...|+|++|+-|-+-.+-|..++-..+.+ ..+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se--- 655 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE--- 655 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH---
Confidence 333455677899999999999999998888877665 789999999999999999998888777766665554 333
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhhCCCChhHHHHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L 797 (1866)
-++|.+.+.|.|.++-|-..|..||..+++ .++.+.+.+++....-.+..|+..+|.+...+
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHH
Confidence 578999999999999999999999999886 35556677777777778888888888544433
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00087 Score=83.24 Aligned_cols=320 Identities=16% Similarity=0.195 Sum_probs=201.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHH
Q 000201 582 QLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 661 (1866)
Q Consensus 582 ~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ 661 (1866)
+|..++....+|-..-+...+.... .+++-.+...+.++-+....-....|+..++...+ ......+.|-
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~Emardlape 146 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMARDLAPE 146 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHhHHhhHH
Confidence 3445555555555555555444422 23443444444332221122223344444444333 2345678888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
+-..++.+++.||+.|.-|+.++....+ +.+..+++...+.|.+++..+-.+++.++..+++..++.+. ++..+++-+
T Consensus 147 Ve~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~l 224 (866)
T KOG1062|consen 147 VERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSL 224 (866)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence 8888999999999999999988877654 55688899999999999999999999999999988776543 334455544
Q ss_pred hhhccC---------------CChHHHHHHHHHHHHHHhhccchhHHhHHHHHH-HhhC--CCChhHH-----HHHHHHH
Q 000201 742 TEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLL-MGLT--DPNDHTK-----YSLDILL 798 (1866)
Q Consensus 742 ~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~-~~l~--d~~~~vr-----~al~~L~ 798 (1866)
+..|++ ++|..+-...+-|+-++.. ++...+.+..++ +... |.+.++- +|+.++.
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~ 302 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIM 302 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 444322 4578888888888888764 333333332222 2222 1222221 4555543
Q ss_pred hccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 799 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 799 ~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
.. ....+....-+.+|-+.+..++.++|.-+...+..... .++...+.+ -..+.++++|++..+|..|..
T Consensus 303 ~I----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrH----r~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 303 DI----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRH----RSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred hc----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHH----HHHHHHHhcCCcHHHHHHHHH
Confidence 31 22233344456677777777777888887777777665 343333333 345667889999999999998
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 879 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 879 aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
.+-.++.. .....++..|+..|.+. +...+...+..+.++++.+.++
T Consensus 373 Ls~~lvn~---~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 373 LSYALVNE---SNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHhcc---ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 88887763 45667788888887765 3447788888888888888776
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0038 Score=76.73 Aligned_cols=275 Identities=18% Similarity=0.279 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHhhcH---hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH--------H--hhhcchh
Q 000201 672 AVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--------S--QCLPKIV 738 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~---~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~--------~--~~l~~iv 738 (1866)
.+|+.---..+.+...-++ ..+...+...++.-.+.+|+.-..|+..+..++++.+..- + ..+..+.
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 5777664444444332222 2234445555555567889999999999999999865431 1 1222344
Q ss_pred HHHh--hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHH
Q 000201 739 PKLT--EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 739 ~~l~--~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.++ +++..+|+.|+-.-.+.+-++.+.+... ...+|.++.+..|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccc------------------------------
Confidence 4433 3566777777777766666665544311 22444444443333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhH------------HHHHHHHHHHHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV------------RSVAARAIGSLI 884 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~v------------R~~a~~aL~~l~ 884 (1866)
+++.+.+..||..+...+..+.+.+. +.+.||.+.++..+..++..+.+.. +.-...++|.+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 35555666777777777777776543 3566777777777777763222211 111222233222
Q ss_pred hhcC--CC----Chh---------hHHHHHHHhcccCCC----HHHHHHHHHHHHHHHHHhCh----------h-HHHHH
Q 000201 885 RGMG--EE----NFP---------DLVSWLLDALKSDNS----NVERSGAAQGLSEVLAALGT----------V-YFEHI 934 (1866)
Q Consensus 885 ~~~g--~~----~~~---------~l~~~L~~~L~~~~~----~~~R~~a~~~L~~l~~~~g~----------~-~l~~l 934 (1866)
..-. .+ +.. ..+-.+...+.++.+ ...-..++.+++.+++++.. . .+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 2100 00 111 111112222333222 12334555666666655421 1 33333
Q ss_pred HHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc
Q 000201 935 LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 935 l~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
+..++..+.- ....+|.+.-..++++..++|+..-||+++.+..++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 3333333322 245667777777888888888888888888888887764
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=89.03 Aligned_cols=338 Identities=19% Similarity=0.154 Sum_probs=211.4
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp 660 (1866)
+..+.+......|..+++.++-..+...+. -.++-+.+.+...+.. ..+--++.|+..++..-.....---...+.
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--evqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--EVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--EEEeeehhhhhhhhccccchhhhhhccchh
Confidence 335566678889999999887766533221 1244455666666543 344446677777765421100000112344
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh--ChhhHHhhhc
Q 000201 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLP 735 (1866)
Q Consensus 661 ~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~--~~~~~~~~l~ 735 (1866)
.+..+-+.++..||..+..++..+-..-....+ ..-+|.+++.+.+.+..+|+-++..++.++-. ..+.+.+.=|
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 455567778889999988888776543222211 34588999999999999999999999988843 3455666678
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-hhH--HhHHHHHHHhhCCCChhH-HHHHHHHHhccccccCCcc-h
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTVDAP-S 810 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i--~~lv~~L~~~l~d~~~~v-r~al~~L~~~~~~~~~~~~-~ 810 (1866)
.++|.++.++.|.+++|+-.|..+|+.++....- .++ ..-+|.+.+.+++|.-.. -+.+..+-.. .+|...+. .
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni-sihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI-SIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc-ccccCcccce
Confidence 8999999999999999999999999999864321 112 345788999998876332 2222222111 11211110 0
Q ss_pred -hhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 811 -LALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 811 -l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
-+-++..+.+.+.- .+.+.+.+|...+-+++..... ..-.-+-..-+|.+..++.|....+|.....|+..++-.-.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~-n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH-NVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh-hhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 11233445555554 3456999999999999863221 11111233578899999999999999998888888875422
Q ss_pred CC-Chh--hHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 889 EE-NFP--DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 889 ~~-~~~--~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
.+ ++- .++|.|+....+ .+.++|-.++.+|+.++..
T Consensus 409 ~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhh
Confidence 21 111 233434333333 3345888888888877654
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.013 Score=77.88 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhh
Q 000201 633 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 633 r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~ 711 (1866)
+..+..++..++...+ |...+...+..++..++.+...+|..|..|+..++..-+.--. +.+...+...+.|.+-.+
T Consensus 794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 3345555555554322 2233334455566677899999999999999999874332211 667777888899999999
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH---HHHHhhCCCCh
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP---TLLMGLTDPND 788 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~---~L~~~l~d~~~ 788 (1866)
|.+|++++|...-+.++...+++ ..+.+-..|+...||+.+.+-+..++... |.+..++. .++....|...
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY----~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYY----DQIIERILDTGVSVRKRVIKILRDICEET--PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHH----HHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhhHHHHHHHHHHHhccchh
Confidence 99999999998888777665544 44566788999999999999999998754 44444444 44444556544
Q ss_pred hHH
Q 000201 789 HTK 791 (1866)
Q Consensus 789 ~vr 791 (1866)
++.
T Consensus 946 ~I~ 948 (1692)
T KOG1020|consen 946 NIK 948 (1692)
T ss_pred HHH
Confidence 444
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.013 Score=77.86 Aligned_cols=442 Identities=15% Similarity=0.173 Sum_probs=221.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch-hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHH-hhccchhhhhH
Q 000201 1311 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY-KNSKLYLVDEA 1388 (1866)
Q Consensus 1311 ~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~-~~~~~~~~~~~ 1388 (1866)
+....+.+...|..-.||..+++.+..++...++ .....+...++.+..|+...+...++..+..+. ...+.. .+.
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~--~d~ 969 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEV--NDQ 969 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcc--ccc
Confidence 3344445556677778888888888888876654 446677777788888887778777777777663 322211 111
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHH-HHHhhhhhhhhhhhcCCccccCCcCCCCCcccc
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR-DAISTSRDKERRKKKGGPILIPGFCLPKALQPL 1467 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~-~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~i 1467 (1866)
+...+.+.... .+...+. .+. .+..+.++..+. ......... .+. +... ..+..+
T Consensus 970 ~~~~~kI~~~~-----~vv~~~~-----d~~---~~~~eqLl~~ilk~~~~~~~~~----~~~-~v~~------~~v~~~ 1025 (1692)
T KOG1020|consen 970 PAKARKISLEV-----DVVMSQV-----DLM---NDWLEQLLDHILKFYLLKTMKE----SVK-PVAL------AKVTHV 1025 (1692)
T ss_pred HHHHHhhHHHH-----HHHHHHH-----HHh---cChHHHHHHHHHHHHHhhhhhh----hhh-HHHH------hhcchH
Confidence 11111111110 0000000 000 011111111110 000000000 000 0000 112223
Q ss_pred HHHHHHhhcc------------CCHHHHH-HHHHHHHHHHhhcChhhhh-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000201 1468 LPIFLQGLIS------------GSAELRE-QAALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTL 1533 (1866)
Q Consensus 1468 lp~l~~~L~~------------~~~~~r~-~a~~~L~~l~~~~~~~~l~-~~v~~i~~~Li~~l~~~~~~~vr~~al~~L 1533 (1866)
+.++.+++.. +..+.|. ....+|..+++.. +.-+. .|+..+-|-|..-........+-..++..+
T Consensus 1026 ~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fskir-P~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1026 LNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIR-PQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcC-chhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 3333333221 1223333 3345566666655 33333 455444433332222222233444444444
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cC---ChhhHHHHHHHH---hccC---C----
Q 000201 1534 SIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST---RVDPLVGDLLSS---LQVS---D---- 1599 (1866)
Q Consensus 1534 ~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-~~---~~~~~l~~L~~~---l~~~---~---- 1599 (1866)
...+..+...-..|+..|-..+.+.+-..+...-..|..|+|.+..- .. .+...+...... ++.+ +
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 44443333333446777777777777666777777888899988652 11 122233332222 2222 1
Q ss_pred --hhHHHHHHHHHHHHHHhcC--------cc---ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh----h
Q 000201 1600 --AGIREAILTALKGVLKHAG--------KS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED----G 1662 (1866)
Q Consensus 1600 --~~vr~~~l~aL~~vi~~~~--------~~---l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~----~ 1662 (1866)
+..+. .+..++.+..+.. .. ..+...+.++.+|.-+..+.+.++|..|...+|.+|...|. .
T Consensus 1185 ~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~ 1263 (1692)
T KOG1020|consen 1185 NFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSR 1263 (1692)
T ss_pred hhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhH
Confidence 22222 2334444444321 11 23456778888887777788899999999999999977664 2
Q ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhh-------CC-------------------CcccC----CcchHHHHH
Q 000201 1663 QLADLLQELLNLASSPSWAARHGSVLVFATFLRH-------NP-------------------SAISM----SPLFLSILD 1712 (1866)
Q Consensus 1663 ~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~-------~p-------------------~~~~~----~~~~~~~~~ 1712 (1866)
++..++..+++..+.... .+......+-..+.+ .+ ..... ......+++
T Consensus 1264 ~v~nly~~ila~~n~~~~-~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~ 1342 (1692)
T KOG1020|consen 1264 EVLNLYDEILADDNSDIK-SKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLD 1342 (1692)
T ss_pred HHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHH
Confidence 244444444432222111 111111111111111 00 00000 113355677
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchh
Q 000201 1713 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 1788 (1866)
Q Consensus 1713 ~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~ 1788 (1866)
.+...+-+.+..+|..|+..+.-.|..+. ..| ..-++-++..-.|+....|..|...+.-+=+..+..+
T Consensus 1343 ~ILe~cl~~d~~~r~~aikvl~liL~QGL-VhP------~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv 1411 (1692)
T KOG1020|consen 1343 NILESCLDRDLQVRLVAIKVLKLILNQGL-VHP------VHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFV 1411 (1692)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHccC-CCc------cchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77778888899999999999986665543 333 5677778888788999999999888777766555444
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0061 Score=74.96 Aligned_cols=343 Identities=16% Similarity=0.123 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhhhCcchhhhcchHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHhC--cCchhcHH-hHHHHHH
Q 000201 594 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVI-QMLPLLL 663 (1866)
Q Consensus 594 ~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~-------~~~~~~~r~~al~al~~L~~~l~--~~~~p~v~-~llp~ll 663 (1866)
+|+..+..+....+.+.+ .++++++...+. +-+++...+||+..+..+..... +.++..+. -+++.++
T Consensus 389 aal~fl~~~~sKrke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 344444444444433334 478888887661 23567888899998888887332 23333333 3577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC--hhhHHhhhcchhHH
Q 000201 664 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVPK 740 (1866)
Q Consensus 664 ~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~--~~~~~~~l~~iv~~ 740 (1866)
..++++.-..|..+.+.+..+-..++..+. -.++......|.+.+-.++..|+.+|.-+.... ...++.|.|.++..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 889999999999999999998666666554 667777888888988999999999999877653 45578899999999
Q ss_pred HhhhccCCChHHHHHHHHHH-HHHHhhccc--hhH-HhHHH----HHHHhhCCCCh---hHH----HHHHHHH---hc--
Q 000201 741 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVP----TLLMGLTDPND---HTK----YSLDILL---QT-- 800 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~----~L~~~l~d~~~---~vr----~al~~L~---~~-- 800 (1866)
++.+-++-+.++-..+.+.+ +++.+.++. +++ ..++. .....+.++++ .+. .|...|. +.
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 99998887776666655543 344433321 111 23333 33334444421 111 1222221 11
Q ss_pred cccc--cCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH-hHHHHHH
Q 000201 801 TFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 877 (1866)
Q Consensus 801 ~~~~--~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~-~vR~~a~ 877 (1866)
++.. .+-......+.|.+.-.+++.-.+.-..|++++.+..-.. +++.|....+...+.+++.++.. .--+.+.
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 1111 0111133445666665666666678888898887765422 35556666677777777776653 3345666
Q ss_pred HHHHHHHhhcCCC------ChhhHHHHHHHhcccCCC-HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Q 000201 878 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 941 (1866)
Q Consensus 878 ~aL~~l~~~~g~~------~~~~l~~~L~~~L~~~~~-~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~ 941 (1866)
-++..+...-+.+ |..-+.......+.++.+ -.++.++++.+-.++-..+.+.++..+|.+.+.
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~v 774 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISV 774 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHH
Confidence 7777777643322 222233333444444433 246677777777777667666566666644443
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00065 Score=87.67 Aligned_cols=177 Identities=16% Similarity=0.077 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 000201 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560 (1866)
Q Consensus 1482 ~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~-vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~ 1560 (1866)
+|..|-.+|..+++.. +..+...++.+...|...+.+..+.+ .-...++.+..+...++..+++ +-+..+.+..++.
T Consensus 749 errgael~L~~l~~~f-g~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMF-GGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHh-hHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 5777778888888887 45555555666666666665432222 3334445555555556666666 5677788888899
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc
Q 000201 1561 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 1638 (1866)
Q Consensus 1561 d~~~~vR~~Aa~aLg~L~~~~--~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~ 1638 (1866)
..+..+|.++++|+|.+.... ......+..++..+.+.+.-++......+.+++.........+|..-+...|...+.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 233445666666666555444444444444444444433333888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 000201 1639 HDDDHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1639 ~~~~~vr~~aa~~l~~L~~~~~ 1660 (1866)
+..+.+|.++.+++..+....|
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999886554
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.035 Score=80.02 Aligned_cols=451 Identities=18% Similarity=0.279 Sum_probs=204.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhccc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~----~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
..+..++..+.|....++.++...++.++...|..+ +|.+-...+..++. ....+......-+..++....--
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~v---l~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYV---LPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHH---hHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 445556777889999999999999999988778544 44444444333332 12222222222222332222111
Q ss_pred c---ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHH
Q 000201 1157 V---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKS 1232 (1866)
Q Consensus 1157 ~---l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~-~~vr~~A~~al~~l~~~ 1232 (1866)
+ ...++-.+...+.+.++.+-..+..+++++.... +..+..+.+.+++.+.+.+.|.. ..-|.++..+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~-g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG-GEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc-cchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 2 2222333333445566666667778888876544 34555566777777777777654 45567777888888766
Q ss_pred hchhh-----HhhHHHHHHHhccCCCchh---HHHHHHHHHhhccccccchhhh--------hhhhcCCccchhHHHHHH
Q 000201 1233 AGMQA-----IDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHIL--------PKLVHLPLSAFNAHALGA 1296 (1866)
Q Consensus 1233 ~g~~~-----~~~ilp~Ll~~L~~~~~~~---~al~~l~~il~~~~~~ilp~Li--------p~L~~~~~~~~~~~al~~ 1296 (1866)
-|... .+.++..+.+.+..+..+. .++..++ .++. ..|+.- -+....+.+.......
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g-~~g~----~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~-- 793 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLG-LLGA----LDPYKHKVTEGTSASKISSEQIKSDIDISL-- 793 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhh-hhcc----cchhHHHHHhhhhhHhhhhccccccchHHH--
Confidence 55421 1223444444443332221 1221111 1111 111100 0000000100000000
Q ss_pred HHHHhCCC-chhhHhhHHHHHHHhcCCCCHHHH-HHHHHHHhHhhhccc---hhcHHHHHHHHHhccCCCchhHHHHHHH
Q 000201 1297 LAEVAGPG-LNFHLGTILPALLSAMGDDDMDVQ-SLAKEAAETVTLVID---EEGVESLVSELLKGVGDNQASIRRSSAY 1371 (1866)
Q Consensus 1297 La~~~g~~-l~~~l~~il~~L~~~l~~~~~~vr-~~a~~~l~~l~~~~~---~~~~~~ll~~L~~~l~~~~~~vR~~a~~ 1371 (1866)
+....... ...|-...+..++..+.++..... .....+...+....+ ....+.+++.++.......+..+.....
T Consensus 794 ~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~ 873 (2341)
T KOG0891|consen 794 LESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQ 873 (2341)
T ss_pred HHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 00000111 111111222233333444321111 111222233333222 1335666666666555444445544333
Q ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHhcCC---cchhhhhHHHHHHHHhhhhhhhh
Q 000201 1372 LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVP---KEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1372 ~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~---~~v~~~A~~aL~~l~~~~~---~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
.+............+ .++.....+.+.+ ..+.......+..+...+. ..+++..+..........++.++
T Consensus 874 q~~~~~~~~~~h~~~----~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~ 949 (2341)
T KOG0891|consen 874 QLTSLVAIVRQHIRP----YMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDR 949 (2341)
T ss_pred hhhhhhhccchhHhh----hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchH
Confidence 333332211222222 2222222222211 1111111111111111111 11222222221111111111111
Q ss_pred hh---hcCCccccCCcCCCCCccccHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC
Q 000201 1446 RK---KKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 1520 (1866)
Q Consensus 1446 ~~---~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~--~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~ 1520 (1866)
.. ..++ ....|-....+..-+.|..++.+.+. ....+..+..+++.+.... .+..+...+..++.+.+...
T Consensus 950 ~~~~~~~~~-~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~---~~~~~~s~i~~~~~r~l~~s 1025 (2341)
T KOG0891|consen 950 VVSRKVLQS-LQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV---DLSEYASRIIHPLVRVLSSS 1025 (2341)
T ss_pred HHHHHhhHH-HHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhccc
Confidence 00 0000 01112122234444566666666554 3456677777777777644 67778888888899998764
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 1552 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~ 1552 (1866)
.+.+..++.+++.+....+..+.-|.|-+.
T Consensus 1026 --~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1026 --PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred --hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 889999999999999999887776666544
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.015 Score=73.64 Aligned_cols=714 Identities=14% Similarity=0.106 Sum_probs=352.8
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHhChhH----------
Q 000201 862 KKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVY---------- 930 (1866)
Q Consensus 862 ~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~---------- 930 (1866)
.....++++.+|..|-..+..+...-| +-..|.+...+. .+-..|+.++..|-..+...+...
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle~~~~------f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~ 83 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLELTEG------FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIV 83 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccccchH------HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcc
Confidence 344557889999999888876654322 333444443332 344578888877777777654321
Q ss_pred ---HHH-HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc
Q 000201 931 ---FEH-ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 931 ---l~~-ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~ 1006 (1866)
.+. +-..+...+.+++..+|.++..++..++..--++ -.++++|.+++++.+.+.+--..+++++..+....-
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd---~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD---EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch---hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 122 2234455556778889999888888888764332 567899999999998777777788888888776553
Q ss_pred ccc----hhchHHhHhccc---CCCchHHHHHHH--HHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 1007 TTS----LPLLLPAVEDGI---FNDNWRIRQSSV--ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 1007 ~~~----i~~llp~l~~~l---~d~~w~vR~~s~--~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
.+. ....++.+.... ...+-..|..++ .++...+..+... . +.. ++..+.+....-.
T Consensus 161 ~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~---------~---e~~-~~~~~~~~s~~l~- 226 (1005)
T KOG2274|consen 161 VEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNV---------E---EVW-AEHVKVFLSQILN- 226 (1005)
T ss_pred HHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHH---------H---HHH-HHHHHHHHHHHHH-
Confidence 221 122344443322 122333444333 3333332221100 0 000 0011111111000
Q ss_pred hhHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHH-H--HHH
Q 000201 1078 KRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE-L--VRK 1152 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~~D-~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~-l--v~~ 1152 (1866)
.+-+++...+ .+++ .++..|..-+.++..++.+.|....+++-..++.....+.. -...+|......=.. - ...
T Consensus 227 ~~~~~l~h~l-~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~ds 305 (1005)
T KOG2274|consen 227 QFMDILEHPL-QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDS 305 (1005)
T ss_pred HHHHHHhhhh-cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCC
Confidence 0011111111 2333 34678888888999999988866555444433332221110 000011100000000 0 000
Q ss_pred hccc-----cccchHHHHhcccCCCCccchhhHHHHHHHHH------HhhchhhHHhhHhhHHHHHHHhhcCCc--HHHH
Q 000201 1153 LGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM------ASAGKSQLLSFMDELIPTIRTALCDSI--LEVR 1219 (1866)
Q Consensus 1153 ~~~~-----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li------~~~~~~~l~~~l~~ll~~l~~~L~d~~--~~vr 1219 (1866)
-++. ..-+++..+...+.. ...+......+.+++ ...+.+++..+... ......|.+ ..+|
T Consensus 306 d~e~~~~~~l~i~i~eF~s~i~t~--~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD----~~~fV~dEd~~~~~~ 379 (1005)
T KOG2274|consen 306 DPEEKSVETLVIQIVEFLSTIVTN--RFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSD----VNQFVADEDDGYTAR 379 (1005)
T ss_pred chhhhChHHhhhhHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhcc----HHHhhccCCCCchhh
Confidence 0000 000011110000000 000000000000000 00011111111100 111222222 2344
Q ss_pred HHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHH
Q 000201 1220 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE 1299 (1866)
Q Consensus 1220 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~ 1299 (1866)
......+-.+...+|...+..+....-+.+.... ..+ ....+..-....++-.-..
T Consensus 380 ~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~-------------at~-----------~~~~~~~wk~qea~l~a~~ 435 (1005)
T KOG2274|consen 380 ISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQ-------------ATY-----------LFNNESWWKIQEALLVAAE 435 (1005)
T ss_pred hhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHH-------------HHH-----------HhcchHHHHHHHHHHHHHh
Confidence 4444444444444554333333221111111000 000 0000000000000000001
Q ss_pred H--hCCCchhhHhhHHHHHHHhcC-CCCHHHHHHHHHHHhHhhhc--cchhcHHHHHHHHHhcc-CCCchhHHHHHHHHH
Q 000201 1300 V--AGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLI 1373 (1866)
Q Consensus 1300 ~--~g~~l~~~l~~il~~L~~~l~-~~~~~vr~~a~~~l~~l~~~--~~~~~~~~ll~~L~~~l-~~~~~~vR~~a~~~l 1373 (1866)
. .+.....++..++..+...+. .+.+.+-..+..++.....+ +..+-+..++...+..+ .+..+.+|..|+.++
T Consensus 436 ~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~ 515 (1005)
T KOG2274|consen 436 SVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAF 515 (1005)
T ss_pred hcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHH
Confidence 1 233344455555555555543 33454444666666666655 33344555666555554 355677899999988
Q ss_pred HHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCcc
Q 000201 1374 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPI 1453 (1866)
Q Consensus 1374 ~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 1453 (1866)
..++ ......+..|.+++.|..+..+...++...-.++|+.+++..++....
T Consensus 516 ~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-------------------------- 567 (1005)
T KOG2274|consen 516 CGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-------------------------- 567 (1005)
T ss_pred Hhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh--------------------------
Confidence 8887 556678888999999999999999999999999999988765542100
Q ss_pred ccCCcCCCCCccccHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC---CCHHHHHH
Q 000201 1454 LIPGFCLPKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSA 1528 (1866)
Q Consensus 1454 ~l~g~~~~~~l~~ilp~l~~~L~--~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~ 1528 (1866)
.-+.+.|.+..... +.+|-+-..+-.++.+++.. .....|+....+|.++.+++.. .+......
T Consensus 568 ---------~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ 636 (1005)
T KOG2274|consen 568 ---------MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNADKAPAGLCAI 636 (1005)
T ss_pred ---------hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCcccccCchhhHH
Confidence 00123333332222 23444444555566666653 4567788888889999988753 23566778
Q ss_pred HHHHHHHHHHhcCCCCCC-chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc----------cCCh-hhHHHHHHHHh
Q 000201 1529 ILSTLSIIIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRV-DPLVGDLLSSL 1595 (1866)
Q Consensus 1529 al~~L~~L~~~~~~~~~~-~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~----------~~~~-~~~l~~L~~~l 1595 (1866)
++..|..+++..+..+.. ++.+..|.+.+|.-.+ +-.+-..+..||..++.. .|+. -.++-.++..+
T Consensus 637 aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqL 716 (1005)
T KOG2274|consen 637 AIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQL 716 (1005)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHH
Confidence 888899899988765432 4456778888886555 557777888999877542 1222 23555555565
Q ss_pred ccCC--hhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 000201 1596 QVSD--AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 1672 (1866)
Q Consensus 1596 ~~~~--~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll 1672 (1866)
-+++ ......+-.-+..++.++|..++ +..++|+..+..-+. ...-.+...-...+..|... ..+++++++.
T Consensus 717 Ldp~~sds~a~~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t----~~~~~l~FL~ 791 (1005)
T KOG2274|consen 717 LDPETSDSAAAFVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT----DLDQLLNFLS 791 (1005)
T ss_pred cCCccchhHHHHHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC----CHHHHHHHHH
Confidence 4443 22223444566678888888887 555555554433232 23334444333444444332 3556666655
Q ss_pred h
Q 000201 1673 N 1673 (1866)
Q Consensus 1673 ~ 1673 (1866)
.
T Consensus 792 S 792 (1005)
T KOG2274|consen 792 S 792 (1005)
T ss_pred h
Confidence 4
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-07 Score=83.99 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 632 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
.|.|++.++..++.+++....+|+..++|.++.++.|+ +|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~--------------------------------------d~rV 43 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQ--------------------------------------DSRV 43 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCC--------------------------------------cHHH
Confidence 46677777777777776656666666666655555555 5555
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHH
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 763 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l 763 (1866)
|..|++.|.++++.....+..++++|++.+.++..|+++.||.+| +.|.++
T Consensus 44 Ry~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 44 RYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 555556666666666666677889999999999999999999988 444444
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0002 Score=89.57 Aligned_cols=361 Identities=18% Similarity=0.195 Sum_probs=214.9
Q ss_pred HHHHHHHcCCCh--hHHHHHHHHHHHHHhhhCc-chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc---
Q 000201 578 RLLDQLMKSDKY--GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--- 651 (1866)
Q Consensus 578 ~ll~~L~~~~~~--~~R~~A~~~L~~l~~~~g~-~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~--- 651 (1866)
.++..|.++++. ...+.....|+.+...... +.+ ...++..+....+.+.+.......+.++..+.+......
T Consensus 3 ~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~-~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 3 ALLALLPDSDSSTDSNYERILEALAALSTSPQILETL-SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred hHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 344444433321 3344455555555543321 111 113344444444444445556666666666665543222
Q ss_pred --hhcHHh-HHHHHHHHcCC-----C--CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC----------CCC--h
Q 000201 652 --EPYVIQ-MLPLLLVAFSD-----Q--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKA--W 709 (1866)
Q Consensus 652 --~p~v~~-llp~ll~~~~D-----~--~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~----------~~~--w 709 (1866)
.-|... ++|.++..... . +..+=..+...+..++..++.+.-..++..+....- +.. +
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 233443 67766655422 1 356777778888888888887665555555544332 122 2
Q ss_pred hhHHHHHHHHHHHHhhChhhHH-hhhcchhHHHhhhc-cCCChHHHHHHHHHHHHHHhhccch-hHHhHHHHHHHhhCCC
Q 000201 710 RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDP 786 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~~~~~~~-~~l~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv~~L~~~l~d~ 786 (1866)
......+.++.++..+.+.... .....++..++... +..++..|..+++++..+.....+. .+..++..+.....
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~-- 239 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS-- 239 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc--
Confidence 2333344444455444433321 23345666666553 3445888999999999888665432 34555554444330
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
.......|..+.+++..+.+.+--. -.+....++..+.+.+.
T Consensus 240 ------------------------------------~~~~~~~~~~~~~~~~Wi~KaLv~R--~~~~~~~~~~~L~~lL~ 281 (415)
T PF12460_consen 240 ------------------------------------SSEDSELRPQALEILIWITKALVMR--GHPLATELLDKLLELLS 281 (415)
T ss_pred ------------------------------------ccCCcchhHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHhC
Confidence 0111233334444444444322000 01334445666666666
Q ss_pred CCCHhHHHHHHHHHHHHHhhcCC----------------CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-
Q 000201 867 DPIPEVRSVAARAIGSLIRGMGE----------------ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 929 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~~~g~----------------~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~- 929 (1866)
+ +++...++++++.+....++ ..|..++|.+++..++..+. .|.....+|+.+.+..+..
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHH
Confidence 6 66777888888877765221 15778899999888765543 6777888999999988876
Q ss_pred ---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh
Q 000201 930 ---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 982 (1866)
Q Consensus 930 ---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~ 982 (1866)
.++.++|.+++.+..+++.++.+++.++..+....+..+.+|++.++|.+++.
T Consensus 359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 55789999999999999999999999999999988999999999999998864
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00033 Score=87.58 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
..+++..++....+..+...|.++++.++.++........ -..++..+...+....+...|..++..+..+..++--.-
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4567777887777777788999999999999997543321 123444444444233345667778888888888754333
Q ss_pred hhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----------------hhHHhHHHHHHhhcCCCChhhHHHH
Q 000201 652 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----------------QGVKLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 652 ~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~----------------~~v~~llp~L~~~L~~~~w~~r~~a 715 (1866)
.|...+++..++..+.| +.+...++.+++.++...+. .-+..++|.+++...+.+-..|...
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 57777888889988888 67788899999888875221 1135689999999887776689999
Q ss_pred HHHHHHHHhhChhh-HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---chhHHhHHHHHHH
Q 000201 716 VQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLM 781 (1866)
Q Consensus 716 ~~~L~~l~~~~~~~-~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~L~~ 781 (1866)
+.+|..+.++.|.. +..+++.++|.+++.|.-+++.|+.++..+|..+...-. .+++..++|.|++
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999977 567899999999999998899999999999998886442 1234556666654
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00093 Score=83.34 Aligned_cols=354 Identities=17% Similarity=0.182 Sum_probs=203.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--
Q 000201 813 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-- 890 (1866)
Q Consensus 813 ~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-- 890 (1866)
.+...+.++++|.++.+|+.++..+..+... +++.. .-..+++.|..++.|.++.|-..|..++..+.+.-...
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 3445556667777777787777777776652 11111 12347778888888999999888888888888865432
Q ss_pred --ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 891 --NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 891 --~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
....++..++..+..-.++ -+... +..+......+ -...++..+...+.+.++.+--++...+-.+...+..
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW-~qi~I---L~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEW-GQIFI---LDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhh-hHHHH---HHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 2334556666666544444 23333 33333444333 2345666666677777777766666666666666555
Q ss_pred hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 967 ~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
--..++..+.|+++..++.+. ++...+++-...++...+.- ...-+..+.-...|+-+ ++..-++.+..+
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~-~~~~~~~Ff~kynDPiY-vK~eKleil~~l------- 342 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEI-LKVEIKVFFCKYNDPIY-VKLEKLEILIEL------- 342 (734)
T ss_pred HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHH-HHhHhHeeeeecCCchh-hHHHHHHHHHHH-------
Confidence 334466777788887776554 77777777666666544321 10000000000011111 222222222222
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1126 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~ 1126 (1866)
...+...+++..+...-.+.+...-+.|+.+++.++....+. ...+ +.
T Consensus 343 ---------------------------a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv----~~ 390 (734)
T KOG1061|consen 343 ---------------------------ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCV----SI 390 (734)
T ss_pred ---------------------------hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhH----HH
Confidence 122233446666666667777777888999999888755443 2334 44
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCC-CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHH
Q 000201 1127 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205 (1866)
Q Consensus 1127 L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1205 (1866)
++..+.-....+-+.+...+..+.++++... ..+++.+...+.+ .+|+.|.+..|.+++-.... +....++.
T Consensus 391 lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i------~~a~elL~ 463 (734)
T KOG1061|consen 391 LLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERI------ENALELLE 463 (734)
T ss_pred HHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhcc------CcHHHHHH
Confidence 4444443344455566777777777766543 4455555554443 35677888888787754333 23356666
Q ss_pred HHHHhhcCCcHHHHHHHH
Q 000201 1206 TIRTALCDSILEVRESAG 1223 (1866)
Q Consensus 1206 ~l~~~L~d~~~~vr~~A~ 1223 (1866)
.+.+.+.|...+|+-.-.
T Consensus 464 ~f~en~~dE~~~Vql~LL 481 (734)
T KOG1061|consen 464 SFLENFKDETAEVQLELL 481 (734)
T ss_pred HHHhhcccchHHHHHHHH
Confidence 677777777777775433
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.7e-06 Score=106.12 Aligned_cols=340 Identities=17% Similarity=0.193 Sum_probs=218.5
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHH
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 935 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll 935 (1866)
.+..+...+.-..+..-..++.++..++...|... ...-..+.+..+. +. .+|..+...+.++.+-.|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~-D~--nvr~~~~~l~v~i~r~~G~~~~~~~- 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA-DK--NVRSEASKLLVEIYRWTGDASKPLL- 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc-cc--ccchhhcccchhhhhhcCCCcCccc-
Confidence 34444555555566666677788888888777542 1111112223333 22 3788888888888887776522111
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHHH--HHHHH------------HH
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDA--ALGAG------------HV 1000 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~~--a~~al------------~~ 1000 (1866)
.+......++.+..+.|.....+...--+.......+. .+++... .-... ..
T Consensus 175 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 175 -------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred -------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 13333444555555544322222222212222221111 1111100 00000 00
Q ss_pred HHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH
Q 000201 1001 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080 (1866)
Q Consensus 1001 i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~ 1080 (1866)
+.-.-..+..+.+-+.++..+.+++|+-|..+++-+...+..-.+. . .. .+.+
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~-~---------~~-----------------~~~~ 294 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE-I---------VK-----------------GYTG 294 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc-c---------cc-----------------Ccch
Confidence 0000011233456778888899999999999998888876442200 0 00 0011
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1160 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1160 (1866)
.+...+-....|.+..|-..|+.++..++...+..+..+...+++.++.++.+....+|.....++..++. ...+..
T Consensus 295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~ 371 (815)
T KOG1820|consen 295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPLSK 371 (815)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHH
Confidence 11112223468999999999999999999988888999999999999999999999999999999988876 334667
Q ss_pred hHHHHhcccCCCCccchhhHHHHHHHHHHhhchh-hHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1161 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1161 llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
+.+.+..++++.++..|.....++...+...++. ....-...++|.+..+.+|.+.+||.+|..+++.+++.+|...+.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888888999999999999999999888877742 234456889999999999999999999999999999999986665
Q ss_pred hHHH
Q 000201 1240 EIVP 1243 (1866)
Q Consensus 1240 ~ilp 1243 (1866)
.++.
T Consensus 452 k~L~ 455 (815)
T KOG1820|consen 452 KLLK 455 (815)
T ss_pred HHHH
Confidence 5544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=82.32 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch---hHHhHHHHHHHhhCCCC
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L~~~l~d~~ 787 (1866)
.|++++..|++++...++.+..+++.|+|.++.++.|++++||..||++|..+++..++. .+.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 589999999999999999999999999999999999999999999999999999988764 45788999999999999
Q ss_pred hhHHHHHHHH
Q 000201 788 DHTKYSLDIL 797 (1866)
Q Consensus 788 ~~vr~al~~L 797 (1866)
+.||.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 9998766654
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.003 Score=75.02 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=177.4
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
..+..+.|.|...+.+...-|...++..+..++..- .-..++++.+..|...+..+....|-.|++.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 456678999999999988888888888888877531 1234677889999999999999999999999999998766
Q ss_pred CCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 889 ~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
... .-+=+.+ +.|-++. .|.-+..++..+.+.-..+..+.++..+.....+-....|..++.++..|+..++..-
T Consensus 336 ~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 336 QKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred cee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 441 1111112 2222332 3455566676776665555777777777777766667777788888888888888765
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchH-HHHHHHHHHHHHHHHhcCCc
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTS 1047 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~-vR~~s~~ll~~ll~~~~~~~ 1047 (1866)
..|+.-+...+++ ...-+.+..+.+++..+++..+.. -...+..+...+.|-.+. +- ++
T Consensus 411 ~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDcey~~I~---vr------------- 470 (898)
T COG5240 411 LSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCEYHQIT---VR------------- 470 (898)
T ss_pred HHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcchhHHH---HH-------------
Confidence 5566555444443 223456667777777766654221 111222232222222211 11 11
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhchh-----hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHH-
Q 000201 1048 GKALLEGGSDDEGASTEAHGRAIIEVLGRD-----KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP- 1121 (1866)
Q Consensus 1048 ~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~-----~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~- 1121 (1866)
+...+|.+ .-.+.+..+|...-=.+..||.+|+.+|..++-+.... +.|
T Consensus 471 ----------------------IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~ 525 (898)
T COG5240 471 ----------------------ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQ 525 (898)
T ss_pred ----------------------HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHH
Confidence 12222221 00112222332222245679999999999887654431 222
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000201 1122 VLMNTLISSLASSSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1122 ~l~~~L~~~l~~~~~~~R~~A~~~L~~l 1149 (1866)
.+...+.+++.+.+.++|..|...+..+
T Consensus 526 sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 526 SVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3345566788899999999988777654
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0033 Score=73.23 Aligned_cols=488 Identities=14% Similarity=0.119 Sum_probs=253.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcccc----hhchHHhH---------hcccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000201 987 NESVRDAALGAGHVLVEHYATTS----LPLLLPAV---------EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1053 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~~----i~~llp~l---------~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~ 1053 (1866)
...||..|+..+....+.++++. ...++|.- .-+++|++.|.|.-+++....+++.- |.-+.
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls 83 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLS 83 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHH
Confidence 45789999888888877766542 22233322 23578999999999999998887531 00000
Q ss_pred --CCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH--HHhHHHHHHHHHH
Q 000201 1054 --GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLIS 1129 (1866)
Q Consensus 1054 --~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l--~~~l~~l~~~L~~ 1129 (1866)
.+-.+..+..-.+ ++....- ...+++-. ....+.+..+-...++++..++.++|-.- -.++-.+...+..
T Consensus 84 ~a~~~~~~~ftpf~v--~~a~si~--~~~r~l~~--~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~ 157 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSV--MIACSIR--ELHRCLLL--ALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKP 157 (728)
T ss_pred HHhccCCcCCCchHH--HHHHHHH--HHHHHHHH--HHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 0001111111000 0111000 00111111 11234455666778999999999988432 1256667777888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcc----------------ccccchH-------------------------------
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGE----------------RVLPSII------------------------------- 1162 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~----------------~~l~~ll------------------------------- 1162 (1866)
.+.++++.+|..+...++.++..... ..+|++-
T Consensus 158 ~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 237 (728)
T KOG4535|consen 158 YIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWL 237 (728)
T ss_pred HhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcce
Confidence 88999999999999999988753210 0011100
Q ss_pred --------HHHhc----------ccCC--CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHH
Q 000201 1163 --------PILSR----------GLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1222 (1866)
Q Consensus 1163 --------p~L~~----------~L~d--~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A 1222 (1866)
|...+ .+.. .-..+|.++++.|..+...++ ....|.-++...+...+.+.++.+...+
T Consensus 238 i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~ 315 (728)
T KOG4535|consen 238 IRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHG 315 (728)
T ss_pred eeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHH
Confidence 00000 0000 011345666666655443332 2344566677777778889999999998
Q ss_pred HHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHH-HHHHhhccc--cccchhhhhhhhcCCccchhHHHHHHHHH
Q 000201 1223 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDG-LKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAE 1299 (1866)
Q Consensus 1223 ~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~-l~~il~~~~--~~ilp~Lip~L~~~~~~~~~~~al~~La~ 1299 (1866)
+.++..+....+.+ ..| +.-.+ .-..+ +..++..+. ........+. .......++.++..
T Consensus 316 a~ll~~lg~~lv~~----~~P-------~~~k~-~~q~~~fw~~~l~~p~~~~~YDs~~~T-----l~~s~Cdals~i~~ 378 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQ----YKP-------DSTKA-PDQRAPFWTMMLNGPLPRALYDSEHPT-----LQASACDALSSILP 378 (728)
T ss_pred HHHHHHHHHHHhhh----cCC-------Ccccc-hhhhccHHHHHccCCChhhhhhhcCCC-----chhHHHHHHhhcCc
Confidence 88887765544421 111 00000 11111 233332110 1111111111 11122334444433
Q ss_pred HhCCCchhhHhhHHHHHHHhcCCCC-HHHHHHHHHHHhHhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 000201 1300 VAGPGLNFHLGTILPALLSAMGDDD-MDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIG 1374 (1866)
Q Consensus 1300 ~~g~~l~~~l~~il~~L~~~l~~~~-~~vr~~a~~~l~~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~ 1374 (1866)
..-..|..--....+.....+.|.. .-++.++..+.+..+.+-+. ..+......++..+.|.....|..+++.+|
T Consensus 379 ~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 379 EAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred hhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhh
Confidence 3223333333456666666665433 44677777776665553322 224555566666777777888999999999
Q ss_pred HHHhh----ccc---hhhhhHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHHhcCCcchhhhhHHHH-HHHHhhhhhh
Q 000201 1375 YFYKN----SKL---YLVDEAPNMISTLIVLLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI-RDAISTSRDK 1443 (1866)
Q Consensus 1375 ~l~~~----~~~---~~~~~~~~il~~L~~ll~---d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l-~~~l~~~~~~ 1443 (1866)
.+-.. .+. .-.......+..+...-. -....|+.+|..+|+.+..... .+.+.- ...++.. .
T Consensus 459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-----~i~~~~~~e~~~~~--~ 531 (728)
T KOG4535|consen 459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-----PIEKPTFAEIIEES--I 531 (728)
T ss_pred hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-----HhhhccHHHHHHHH--H
Confidence 88542 221 112233444444444332 2345799999999999875322 111111 1111100 0
Q ss_pred hhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHHHHhcCCCC
Q 000201 1444 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFP 1522 (1866)
Q Consensus 1444 ~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~-~~l~~~v~~i~~~Li~~l~~~~~ 1522 (1866)
...+. + ....+...+|-+++.++|.+.++-.- -.-.++.+.+++.|...+.+..+
T Consensus 532 ---~~l~~-------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 532 ---QALIS-------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred ---Hhccc-------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 00000 0 01123456888999999999975411 11235566677777777766556
Q ss_pred HHHHHHHHHHHHH
Q 000201 1523 WQVKSAILSTLSI 1535 (1866)
Q Consensus 1523 ~~vr~~al~~L~~ 1535 (1866)
..||..|..+|..
T Consensus 588 FKVRi~AA~aL~v 600 (728)
T KOG4535|consen 588 FKVRIRAAAALSV 600 (728)
T ss_pred ceEeehhhhhhcC
Confidence 6677666665553
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-05 Score=87.40 Aligned_cols=494 Identities=17% Similarity=0.156 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-cCchhcHHhHHH--------H-HHHHcCCCCHHHHHHHHHHHHHHHH-------------
Q 000201 630 AKRREGALLAFECLCEKLG-RLFEPYVIQMLP--------L-LLVAFSDQVVAVREAAECAARAMMS------------- 686 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~-~~~~p~v~~llp--------~-ll~~~~D~~~~VR~~a~~al~~i~~------------- 686 (1866)
..+|++|+.+|..+...++ +.|-.|+..++| . ++-.++|+++..|..|.+.+..+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 5789999999999888766 556677665554 2 3345789999999998888776653
Q ss_pred --hhcHhhH------HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhh-HH-hhhcchhHHHhhhccCCChHHHHH
Q 000201 687 --QLSAQGV------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LS-QCLPKIVPKLTEVLTDTHPKVQSA 755 (1866)
Q Consensus 687 --~l~~~~v------~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~-~~-~~l~~iv~~l~~~L~D~~~~VR~a 755 (1866)
+++++.+ .....-++-.|. +.+..+-...+.+|..+....|-. +. ..+-+++..+.++.+.+++.||..
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 2222222 112222333332 445677777888999999888743 22 234567777788889999999999
Q ss_pred HHHHHHHHHhhcc-chhHHhHHHHHHHh--hCCCChhHHHHHHHHHh------ccccccCCcchh---------------
Q 000201 756 GQTALQQVGSVIK-NPEIASLVPTLLMG--LTDPNDHTKYSLDILLQ------TTFVNTVDAPSL--------------- 811 (1866)
Q Consensus 756 A~~aL~~l~~~i~-~~~i~~lv~~L~~~--l~d~~~~vr~al~~L~~------~~~~~~~~~~~l--------------- 811 (1866)
+...++.+...-. -|+++..+..-... +.-|.....+..+.+-. +........+.-
T Consensus 170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~ 249 (728)
T KOG4535|consen 170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPK 249 (728)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCC
Confidence 9999988875332 24443322111100 00000001111111110 000000000000
Q ss_pred --hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 812 --ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 812 --~~l~p~L~~~l~d--~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
.-......+.+.. .-..+|..+.+.+..++..++ ....|.-++...+...+.++.+.++..+++++..+...+
T Consensus 250 ~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l 326 (728)
T KOG4535|consen 250 EDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL 326 (728)
T ss_pred ccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence 0011112222222 123689999999998887653 344566677778888888999999999999999998877
Q ss_pred CCCChh------hHHHHHHHhcc-cC--------CCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhcc-CChh
Q 000201 888 GEENFP------DLVSWLLDALK-SD--------NSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSH-QRAS 948 (1866)
Q Consensus 888 g~~~~~------~l~~~L~~~L~-~~--------~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~-~~~~ 948 (1866)
+.++.+ .....+.-.+. .. .........+..++.+...-... --....+.+...+.+ .+.-
T Consensus 327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRL 406 (728)
T ss_pred hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHH
Confidence 743222 11111111111 00 00112334455555543321110 112344455555554 3666
Q ss_pred HHhHHHHHHHHhhhhhch-hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------chhchHHhH
Q 000201 949 VRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLLLPAV 1017 (1866)
Q Consensus 949 vR~~al~~l~~L~~~~g~-~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~i~~llp~l 1017 (1866)
+|..++..++.+..+-+- .-..+.......++..+.|..-++|..+..++..|...+-.. .+..++..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 777777777655444332 223456666777778888877788888887777665543211 111111111
Q ss_pred hc---ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH-HHHHHHHHhcCCC
Q 000201 1018 ED---GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDV 1093 (1866)
Q Consensus 1018 ~~---~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~-~vl~~L~~~~~D~ 1093 (1866)
.. ...-.++|||..+++.+|.+++-+...... .++ +..+ .+...+.......
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~-----------------------~~~-e~~~~~~~~l~~~v~~~~ 542 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP-----------------------TFA-EIIEESIQALISTVLTEA 542 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc-----------------------cHH-HHHHHHHHhcccceeccc
Confidence 11 112246677777788777776443211000 000 0000 1111111123445
Q ss_pred cHHHHHHHHHHHHHHhhcChhhH--HHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLA-SSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l--~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv 1150 (1866)
...||..|+.+++.+..|..-.+ .++.+.+++.++..+. ..+..+|..|+.+|..-.
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 67899999999999998643212 2355666666665554 467788888888776543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.02 Score=70.66 Aligned_cols=283 Identities=22% Similarity=0.260 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHH
Q 000201 874 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 874 ~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
-.|..++|.+-...|.+ ....|.+.|++.+...+|.+++-+||-.. +|... .++...+...+..++.-.-+++
T Consensus 397 GGalyAlGLIhA~hG~~----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa~-~eiYe~lKevLy~D~AvsGEAA 469 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG----ITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSAN-EEIYEKLKEVLYNDSAVSGEAA 469 (929)
T ss_pred cchhhhhhccccCcCcc----HHHHHHHHHHhccchhhhhhhhhhccchh--ccccc-HHHHHHHHHHHhccchhhhhHH
Confidence 36778888877665544 67777788887777779999988887543 33321 2333444444444444334444
Q ss_pred HHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHH
Q 000201 954 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s 1032 (1866)
--.+|-+-..... .+.+.-++.+..+. .+.+... +..+-.++ .++.. ...-|.+.+.+.|++.-+|.+.
T Consensus 470 gi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RG-l~vGiaL~-~ygrq--e~Ad~lI~el~~dkdpilR~~G 539 (929)
T KOG2062|consen 470 GIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRG-LAVGIALV-VYGRQ--EDADPLIKELLRDKDPILRYGG 539 (929)
T ss_pred HHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHH-HHHhHHHH-Hhhhh--hhhHHHHHHHhcCCchhhhhhh
Confidence 4444433221111 12333333333322 2232221 11111111 12211 1122334444566666677655
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhc
Q 000201 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAALHVWKTIVAN 1111 (1866)
Q Consensus 1033 ~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~-~~~~D~~~~vR~~A~~~l~~l~~~ 1111 (1866)
+-.++- .+. |. -.+..+..|. ...+|.+..||++|+..++.+.-.
T Consensus 540 m~t~al-Ay~--------------------------------GT-gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 540 MYTLAL-AYV--------------------------------GT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHHH-HHh--------------------------------cc-CchhhHHHhhcccccccchHHHHHHHHHheeeEec
Confidence 433321 111 11 1122333333 246899999999999999998877
Q ss_pred ChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh
Q 000201 1112 TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1191 (1866)
Q Consensus 1112 ~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~ 1191 (1866)
.|.. +|..+..|. .+-++.+|..++.+||-.|...|.. ..+..|.....|+..-||++||.+++-++..+
T Consensus 586 dp~~----~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 586 DPEQ----LPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred Chhh----chHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 7754 344444443 2458899999999999988776654 33444555556888889999999999888776
Q ss_pred chhhHHhhHhhHHHHHHHhhcCCcHHH
Q 000201 1192 GKSQLLSFMDELIPTIRTALCDSILEV 1218 (1866)
Q Consensus 1192 ~~~~l~~~l~~ll~~l~~~L~d~~~~v 1218 (1866)
.+ .+-+-+..+...+.+.+.|.+++.
T Consensus 656 t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 656 TE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred cc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 54 334455666666777777776553
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0032 Score=74.72 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=127.0
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccCCcchhhh
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPSLAL 813 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~~~~~l~~ 813 (1866)
.++=.+.++.++.++..|.....+++.+.....+ +--....+++-+....+ .++ .|+..|.. .+++.....
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted--vlm~tssiMkD~~~g~~~~~kp~AiRsL~~-----Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED--VLMGTSSIMKDLNGGVPDDVKPMAIRSLFS-----VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh--hhHHHHHHHHhhccCCccccccHHHHHHHH-----hcCcchhhh
Confidence 4556678899999999999999999888764432 21223334444433322 233 46665543 122222222
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH---------hHHHHHHHHHHHHH
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP---------EVRSVAARAIGSLI 884 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~---------~vR~~a~~aL~~l~ 884 (1866)
+-..+.+++-++.+.+|..|.-.-..+.. ........+....-.++..+-+.|+. ..-..-..++|.+.
T Consensus 138 ~er~l~~a~Vs~~~a~~saalv~aYhLlp--~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLy 215 (898)
T COG5240 138 FERYLNQAFVSTSMARRSAALVVAYHLLP--NNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLY 215 (898)
T ss_pred HHHHhhhhccccchhhhhhHHHHhhhhcc--ccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHH
Confidence 22333344445555555543322221111 01012222333333333332221110 00011233444444
Q ss_pred hhcCCCChhhHHHHHHHhcccCCCHHHHHHH---HHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhh
Q 000201 885 RGMGEENFPDLVSWLLDALKSDNSNVERSGA---AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 961 (1866)
Q Consensus 885 ~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a---~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~ 961 (1866)
..-..+.+ .+-.+++.+.+..+-....+- .....++... ..+.+..+.|.+-.++.+.-..|--.+...+..++
T Consensus 216 q~kr~dkm--a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~ 292 (898)
T COG5240 216 QSKRTDKM--AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALS 292 (898)
T ss_pred HHhcccHH--HHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 42221211 111222222221110000000 0111111111 12244566677777777654444444444555544
Q ss_pred hh-hchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHH
Q 000201 962 RS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1029 (1866)
Q Consensus 962 ~~-~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR 1029 (1866)
.. .|.+ ++.+.+..+...++...-..|.+|++.+..+...++.+ +..--+.++..+.|.|-.+-
T Consensus 293 ~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~evEsLIsd~Nr~Is 357 (898)
T COG5240 293 EENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNKEVESLISDENRTIS 357 (898)
T ss_pred HhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecChhHHHHhhcccccch
Confidence 33 3554 45566666777777777778888888888877665543 22223455555656554443
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=104.39 Aligned_cols=198 Identities=21% Similarity=0.219 Sum_probs=162.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
-++.-+.+++|+.|..|+.++...+...+.+ .-...+++-.+......+.|..+-.-++.+++.|+..++..|.+|...
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 3444446889999999999999999876511 112345666777777777777888889999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh--HHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~--~~~~l~ 735 (1866)
++|.++..++|....+|+++..+++.+.. ...+..+.+.+.+.+.+.+++.|.....+++......+.. ....+.
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILN---STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 99999999999999999999999999987 3445788999999999999999999999999888765421 233456
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 779 (1866)
.++|.+....+|.+..||.+|..+++.+.+.++.+.+..++..+
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 88999999999999999999999999999988876555444433
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.002 Score=80.55 Aligned_cols=428 Identities=17% Similarity=0.151 Sum_probs=253.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcch
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 616 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~i 616 (1866)
-.+..+++...++++.+|..+...+..+- .+...+++-.-+....+++++-+|+.|+.+.+.+-. .+++.....++
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CChhhccccch
Confidence 45677888888999888887766543221 122333333333444567788899999999988765 34555556688
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc-hhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV 693 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~-~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v 693 (1866)
++.|.+++.++ ++.+-..|+.++..+.+.-.... -....+++..++..+.+-+.=-+ ...+..+....+.. ..
T Consensus 162 ~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea 237 (734)
T KOG1061|consen 162 VDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREA 237 (734)
T ss_pred hHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhH
Confidence 99999998854 56777778888888887654311 11223344444443332211111 12223333333332 23
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
..++..+...|.+.+..+-.+++.++-......+......+..+-|.++.++.- .++++..+..-+.-+.....+ .+.
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~-~~~ 315 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPE-ILK 315 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChH-HHH
Confidence 567777777888888888888888888777766664444455666666655554 448777777666655543221 112
Q ss_pred hHHHHHHHhhCCCChhHH----HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcc
Q 000201 774 SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr----~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~ 849 (1866)
.-+..+.=..+||- +++ +++..+.. ...++.+++.+...-.+-+.+.-+++..++|+++....+.
T Consensus 316 ~~~~~Ff~kynDPi-YvK~eKleil~~la~--------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 316 VEIKVFFCKYNDPI-YVKLEKLEILIELAN--------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred hHhHeeeeecCCch-hhHHHHHHHHHHHhh--------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--
Confidence 22222222224553 222 33333332 2345667777777777778888889999999998754331
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
..+++.|.+++.-....+-..+...+..+.+..+.. +..+++.+...+.+-.++..|...++-+|+-+..+..
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~-~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~- 457 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK-YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN- 457 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc-hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-
Confidence 457788888887555555556677777777766544 3667777766666655565677777777876665543
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh-ccC-CChHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGA 997 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~-l~d-~~~~VR~~a~~a 997 (1866)
..+++..++++..+....|+-..+.+...+....+..- +..+..++.. ..| .++++|+.++--
T Consensus 458 -a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 458 -ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET----QELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred -HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHhhhhccccChhhhhhHHHH
Confidence 24566667777777766666544444333333333222 2233333333 233 356888876543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0055 Score=75.21 Aligned_cols=334 Identities=16% Similarity=0.099 Sum_probs=205.5
Q ss_pred ccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 000201 1466 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 1545 (1866)
Q Consensus 1466 ~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~ 1545 (1866)
.+.+-+...+.++-+-+|..|...+-.+.... +++++|.++. |..-|.+. +++|..+|...+++|.++-|..+.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~Fpr----L~EkLeDp-Dp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPR----LVEKLEDP-DPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHH----HHHhccCC-CchHHHHHHHHHHHHHhhCCcccc
Confidence 35556666677778889999999999999888 7788877654 46777774 789999999999999999998766
Q ss_pred CchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHHHh---cCcc
Q 000201 1546 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKH---AGKS 1620 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~-~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~---~~~~ 1620 (1866)
++.| .|.+.+.+. |-++-....+.+|.|.-+.||+. ++++.|.+.+.++. ......+|+..|+.. .|..
T Consensus 218 ~LAP----~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~--AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 QLAP----LFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV--AMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred cccH----HHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHHheeehhccCCC
Confidence 6555 566666665 77888888999999988888864 57777877776432 122333444444433 1221
Q ss_pred ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1621 l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
=..+....+...|..++.++|...+-.+.-+++.+++..|. .+...-+-++.-+.+.+...|..+...|..++..-
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk--- 367 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK--- 367 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh---
Confidence 22466778888888889999999999999999999998885 33333333445556667777776666666555442
Q ss_pred ccCCcchHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhh--cCCCCHHHHHHHHHHH
Q 000201 1701 ISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA--LHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~~~-~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~~~vR~~a~~~l 1777 (1866)
-..+++..+....... ....|.-- +..++.-|....+.+......++..++.. +.+ ....+..+.+.+
T Consensus 368 -----Nl~eIVk~LM~~~~~ae~t~yrdel---l~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~-~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 368 -----NLMEIVKTLMKHVEKAEGTNYRDEL---LTRIISICSQSNYQYITDFEWYLSVLVELARLEG-TRHGSLIAEQII 438 (877)
T ss_pred -----hHHHHHHHHHHHHHhccchhHHHHH---HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc-cchhhHHHHHHH
Confidence 3445666555544433 33455432 22233333322221111222333333321 222 445556666666
Q ss_pred HHHHhhCcchhhhhHhhHHHHHHh-----h-h--ccCcchhhhhHHHHHHHhhcccc
Q 000201 1778 KSVAKANPSAIMVHVALFGPALAE-----C-L--KDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1778 ~~~a~~~~~~~~~~l~~l~p~l~~-----~-~--~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
....+.. .++++.-..+-.++. . . ...-.+|=.||-.|+.......+
T Consensus 439 Dv~iRV~--~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 439 DVAIRVP--SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHheech--hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 6666643 344443222222211 1 1 11224666777777666555443
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.032 Score=69.56 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHc-----CCCCHHHHHHHH-HHHHHHHHhhcHh-hH-----HhHHHHH
Q 000201 633 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAAE-CAARAMMSQLSAQ-GV-----KLVLPSL 700 (1866)
Q Consensus 633 r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~-----~D~~~~VR~~a~-~al~~i~~~l~~~-~v-----~~llp~L 700 (1866)
|-.|-..|..+.+..+..+.|++..++.....+. +|-+.-+++.|. .+.+.-+..++.. .+ ..++|.+
T Consensus 414 RPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl 493 (978)
T KOG1993|consen 414 RPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPEL 493 (978)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHh
Confidence 3334455555555555545555444443333333 333445555553 3333333323221 11 3445544
Q ss_pred HhhcCCCChh-hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhcc--chhHHhHH
Q 000201 701 LKGLEDKAWR-TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIASLV 776 (1866)
Q Consensus 701 ~~~L~~~~w~-~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~--~~~i~~lv 776 (1866)
- .+..+.| .|+-.+.++|..... +.....-+.+...++++++|. +--||-++.+++.-...... ...+.+++
T Consensus 494 ~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l 569 (978)
T KOG1993|consen 494 A--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL 569 (978)
T ss_pred h--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH
Confidence 4 2233333 356677888877762 112222345667788899998 56678899999988776442 11222222
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 777 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 777 ~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
|.+... +.+.++. ..-++|......++.+...++. .+.||..
T Consensus 570 enlf~~-----------------------------------lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e--~I~P~~~ 612 (978)
T KOG1993|consen 570 ENLFVL-----------------------------------LFKLLKAVEECDTKTSVLNLLSTLIERVSE--HIAPYAS 612 (978)
T ss_pred HHHHHH-----------------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 322211 1111111 1235666766777777765543 4557777
Q ss_pred hhhHHHHHHhc--CCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 856 LLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 856 ~ll~~L~~~l~--d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.+++.+-.+.. ...+-.|.+...++..++.++|.+
T Consensus 613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 77766666554 356778889999999999999976
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0029 Score=77.10 Aligned_cols=457 Identities=18% Similarity=0.180 Sum_probs=250.2
Q ss_pred HhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH
Q 000201 1118 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1196 (1866)
Q Consensus 1118 ~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l 1196 (1866)
+++..++..+.+-+.++++..-..|+.|++.+-.. +.+.+.+++-..|..+ +...-+|+.++.++-.+.... |+.+
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~--~~~~~vkqkaALclL~L~r~s-pDl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSG--SSMDYVKQKAALCLLRLFRKS-PDLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCC--cchHHHHHHHHHHHHHHHhcC-cccc
Confidence 44556666777777888888888888888866432 1222334444444432 344568888888888887664 3222
Q ss_pred HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchh
Q 000201 1197 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 1276 (1866)
Q Consensus 1197 ~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~ 1276 (1866)
. ...-...+...|.|.+-.|--++...+..+.+...+..-. .+| .|+..+..++.........+
T Consensus 184 ~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-~~~-------------~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 N--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-CLP-------------LAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred C--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-hHH-------------HHHHHHHHHHhhcccchhhc
Confidence 1 1233455667788888888888777777777655443222 222 12222333222111111111
Q ss_pred hhhhhhcCCccchhHHHHHHHHHHh---CCCchhhHhhHHHHHHHhcCCC--CHHH-----HHHHHHHHhHhhhccch--
Q 000201 1277 ILPKLVHLPLSAFNAHALGALAEVA---GPGLNFHLGTILPALLSAMGDD--DMDV-----QSLAKEAAETVTLVIDE-- 1344 (1866)
Q Consensus 1277 Lip~L~~~~~~~~~~~al~~La~~~---g~~l~~~l~~il~~L~~~l~~~--~~~v-----r~~a~~~l~~l~~~~~~-- 1344 (1866)
....+-.+-+ ..+++..|...- .+.-...+..++..+++...++ ...+ +.+.+--.-.++..++.
T Consensus 248 Tyy~vP~PWL---~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~ 324 (938)
T KOG1077|consen 248 TYYFVPAPWL---QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP 324 (938)
T ss_pred eeecCCChHH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH
Confidence 0000000000 011111111100 0111223344444444444321 1111 22222111222333443
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcCCc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
+-+...+..|...+.+....+|..++..+..++.... ..+.+..-...++..++ +.|..+|..|...|-.++...
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~-- 400 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS-- 400 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh--
Confidence 3366777777788888888888888888887765421 11222233555666677 788888888887777765422
Q ss_pred chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhh
Q 000201 1424 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 1503 (1866)
Q Consensus 1424 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~ 1503 (1866)
....|+.-+++.+.+.+...|+....-++-+++.. ..++.
T Consensus 401 ---------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy-AtDy~ 440 (938)
T KOG1077|consen 401 ---------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKY-ATDYS 440 (938)
T ss_pred ---------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCcc
Confidence 22334555566677777888888888888888776 45566
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH---H
Q 000201 1504 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL---S 1578 (1866)
Q Consensus 1504 ~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L---~ 1578 (1866)
=|+..+ -.|+++.++..+.+|=.-.++... -..++.+|. -..+.+.|+.+ |+.+-..++..||.. +
T Consensus 441 WyVdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LI 511 (938)
T KOG1077|consen 441 WYVDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLI 511 (938)
T ss_pred hhHHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 565544 457888887655554322222111 011122221 23455566666 788888888888766 3
Q ss_pred hccCChhh--HHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 1579 ALSTRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 1654 (1866)
Q Consensus 1579 ~~~~~~~~--~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~ 1654 (1866)
.-.|+..+ .+.-+.+.+....+..|...+..+-.++... ++..+.|+.+.......-|.+++..+.+-+.-
T Consensus 512 a~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql 584 (938)
T KOG1077|consen 512 ADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQL 584 (938)
T ss_pred cCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 33455443 4555666666556666777777666666543 45667777777666566677887777776653
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.075 Score=69.64 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=111.9
Q ss_pred CccccHHHHHHhhc----cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000201 1463 ALQPLLPIFLQGLI----SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 1538 (1866)
Q Consensus 1463 ~l~~ilp~l~~~L~----~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~ 1538 (1866)
-+..+.|++.++.. .++++.+..|..+++.++--. . .|...-.+.|+.++....++-+|..+.-++|.+.-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a----~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-A----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-H----HHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 44567888888874 467999999999999998643 2 23344456678888766678899999999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhc
Q 000201 1539 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 1617 (1866)
Q Consensus 1539 ~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~ 1617 (1866)
+.+..+.|+.+ .+...|.|++..||..|...|.+|+-- .-++..++.++.-.+.+++.+++..+=.-.+++-++.
T Consensus 991 ~fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 991 RFPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hcccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 88876666554 556678999999999999999999532 2345567889988899999988887776777765544
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.012 Score=71.92 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-HHhHHHHHHhhcCCCChhhHHHH
Q 000201 637 LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 637 l~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v~~llp~L~~~L~~~~w~~r~~a 715 (1866)
+.|+..++..-++.+..-+..=+|.++ .-++..+.||+.++-|+-++.+..++-. .......++..|+|.+.++-.++
T Consensus 129 ~LAL~~I~niG~re~~ea~~~DI~KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~ 207 (938)
T KOG1077|consen 129 CLALHCIANIGSREMAEAFADDIPKLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAA 207 (938)
T ss_pred HHHHHHHHhhccHhHHHHhhhhhHHHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeeh
Confidence 334444444444333333333334443 3467789999999999999988754322 24667778888999999999999
Q ss_pred HHHHHHHHhhChhhHHhhhcchhHHHhhhccC-------------CChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHh
Q 000201 716 VQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 782 (1866)
Q Consensus 716 ~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D-------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~ 782 (1866)
..++..++...|+....+++.-+..+...... +.|......++.|..+ ...
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~--------------- 271 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTP--------------- 271 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCC---------------
Confidence 99999999998888777776666555543321 1233333333333222 001
Q ss_pred hCCCChhHH----HHHHHHHhccccccCCcchhhhHHHHHHHhhcC----CCH---HHHHHH-HHHHHHHhhhcCCCcch
Q 000201 783 LTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE----RSA---ETKKKA-AQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 783 l~d~~~~vr----~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d----~~~---~vr~~a-~~~l~~l~~~l~~~~~l 850 (1866)
.|| .+| ++++.+.+ ..++ .+. ..+... .+++ +++..+...
T Consensus 272 -~D~--~~r~~l~evl~~iLn---------------------k~~~~~~~k~vq~~na~naVLFeaI-~l~~h~D~e--- 323 (938)
T KOG1077|consen 272 -EDP--STRARLNEVLERILN---------------------KAQEPPKSKKVQHSNAKNAVLFEAI-SLAIHLDSE--- 323 (938)
T ss_pred -CCc--hHHHHHHHHHHHHHh---------------------ccccCccccchHhhhhHHHHHHHHH-HHHHHcCCc---
Confidence 111 122 22222221 1110 000 111111 1122 222222221
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
...+...+..|.+++.+....+|..+...+..++..-.. +....-...++..|+.+.+..+|+.+++-|-.+|. .+
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~ 400 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VS 400 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hh
Confidence 223455667777778888889998888888777765111 12233455677778877777799999888866654 33
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 979 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~l 979 (1866)
..+.++..+++.+...++.+|+....=..-|++.+..++.=|+..+++.+
T Consensus 401 Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 401 NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 45678888888888889999998777777788877777766776666544
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=84.98 Aligned_cols=199 Identities=19% Similarity=0.150 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
...++..++..+-.+.....|.+|...|-.+...-+...+. ...|+..+.+.+.+..+...+..|+..++.+++.-+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45677777888877766788999999888877643333332 1256667777778767788899999999999988777
Q ss_pred CchhcHHhHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh-
Q 000201 650 LFEPYVIQMLPLLLVAFSDQVVAVR-EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 727 (1866)
Q Consensus 650 ~~~p~v~~llp~ll~~~~D~~~~VR-~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~- 727 (1866)
.|..+....+-.++...+|.++.|- .++.+|+..+++..+-..+..+.|.++. .+...-..++..+..+++..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 7888888888888888899877554 4556667777777777777888777766 444455566778888888765
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+.+...++++.|.+++..+.+...||+.|+.||-.+...++.+++.+
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 45778899999999999999999999999999999998887444433
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=88.46 Aligned_cols=226 Identities=20% Similarity=0.187 Sum_probs=150.7
Q ss_pred HHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc---------c
Q 000201 938 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---------T 1008 (1866)
Q Consensus 938 l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---------~ 1008 (1866)
+.....+.++.||..|+..+-.|.. |.. .-..+.....+.++|++++||.+|++.+....+.++. +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--ccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 3444567788999999988887777 332 1233556677889999999999999988877766521 1
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC----------------------------------cccccccC
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT----------------------------------SGKALLEG 1054 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~----------------------------------~~~~~~~~ 1054 (1866)
..+.....+.+.+.|.+|.||..+.+++|.+=. ++.. +||-+-.+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 344556677888899999999999999987521 1100 01111000
Q ss_pred C-CCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC
Q 000201 1055 G-SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1133 (1866)
Q Consensus 1055 ~-~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~ 1133 (1866)
. +|+++... ..++.. | ...++..++.|+-.+||.+|+..+..++.+.|.. -...+..|+..+++
T Consensus 357 vpsee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfND 421 (823)
T KOG2259|consen 357 VPSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFND 421 (823)
T ss_pred Cchhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhcc
Confidence 0 00000000 001110 0 1223334577888999999999999999988853 34556777778899
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHH
Q 000201 1134 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1186 (1866)
Q Consensus 1134 ~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~ 1186 (1866)
..+.+|..|..+|..+...+ .+-.+.++.+...+.|.++++|.+.-..|+.
T Consensus 422 E~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999988762 3445666777777888899999877665543
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.11 Score=65.82 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhhc-CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000201 1706 LFLSILDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 1784 (1866)
Q Consensus 1706 ~~~~~~~~l~~~~~-~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~ 1784 (1866)
+....+|.+.+-+. ++...+|.+.+.|||+++.+.. .-.+..++.+...|.|+++-|||-++..+.++-+..
T Consensus 965 LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-------am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 965 LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-------AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-------HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 44556776665544 5567999999999999988753 245678889999999999999999999999888764
Q ss_pred cchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhcccccchhHHHHHHHh
Q 000201 1785 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838 (1866)
Q Consensus 1785 ~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~ 1838 (1866)
. ++=.-...+..+. ..-|.+..+|.-|+-+|.++++..+..=.++.|-++|
T Consensus 1038 ~--vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1038 I--VKWNGELFIRFML-ALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred h--hhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 2 2211122333333 3458889999999999999999876543456777776
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.03 Score=69.99 Aligned_cols=285 Identities=17% Similarity=0.152 Sum_probs=153.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
..+.|.+.+.+.+....+-..++..+.++.... ..++.| -+..+..++..+.+.+|-.|.+.|..++...+...
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 346677778888777788888888887776532 234444 56677778889999999999999999998765431
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
...-..| +.+-++. .|.-+.-++..+.+.......+.++..+-....+-+.+.+.....++..++..++..-..+
T Consensus 318 -~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 318 -TVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred -cccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 1111112 1122222 3555566666666655555666777666666666566666666777777777766533222
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~ 1048 (1866)
++-+...+.+ +..-+-+.+..+++..++...+.. ....+...+++.. + +.-+...++-+-...+...
T Consensus 393 m~FL~~~Lr~---eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce----~--~~i~~rILhlLG~EgP~a~- 462 (865)
T KOG1078|consen 393 MNFLSNMLRE---EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE----F--TQIAVRILHLLGKEGPKAP- 462 (865)
T ss_pred HHHHHHHHHh---ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc----c--hHHHHHHHHHHhccCCCCC-
Confidence 2222111211 112223334445544444321110 0111111122111 1 1111111111111100000
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHH
Q 000201 1049 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1128 (1866)
Q Consensus 1049 ~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~ 1128 (1866)
.-...+..+|...-=.+..||.+|+.++..+..+.+. ..+.+...+.
T Consensus 463 -----------------------------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllk 509 (865)
T KOG1078|consen 463 -----------------------------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLK 509 (865)
T ss_pred -----------------------------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHH
Confidence 0001111222111123567999999999988854432 2345566677
Q ss_pred HhhcCCCHHHHHHHHHHHHHHH
Q 000201 1129 SSLASSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1129 ~~l~~~~~~~R~~A~~~L~~lv 1150 (1866)
+++.+++.++|..|...|..+-
T Consensus 510 Rc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 510 RCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhcCchHHHHHHHHHHHHHhh
Confidence 8889999999999888887665
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.4e-06 Score=69.56 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHH
Q 000201 709 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 763 (1866)
Q Consensus 709 w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l 763 (1866)
|++|.+|+.+||.++...++.+..+++.++|.+..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999864
|
... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0013 Score=80.53 Aligned_cols=247 Identities=23% Similarity=0.242 Sum_probs=156.8
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
...+.+...+.|++..||..+...++.+ +.+..+|.+...+.+.++.+|..++.+||.+-. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4567788889999999999998885544 336789999999999999999999998886553 34
Q ss_pred hhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC------------hhHH-HHHHHHHhccc
Q 000201 737 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 802 (1866)
Q Consensus 737 iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~------------~~vr-~al~~L~~~~~ 802 (1866)
.++.+.+++. |.+..||..|.++|+.+...- .++.++..+.++. ..+| .+...+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5566677776 899999999999999887422 1344444554443 1234 233333321
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
......+.+...+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..++.++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234667777888888888888888888776521 3466777888888889998888777765
Q ss_pred HHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhh
Q 000201 883 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 961 (1866)
Q Consensus 883 l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~ 961 (1866)
+-. ....+.+...+.+.... .+......++ +. ........+.....+....+|..+...++.+.
T Consensus 240 ~~~-------~~~~~~l~~~l~~~~~~-~~~~~~~~~~------~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 240 IGD-------EEAVDALAKALEDEDVI-LALLAAAALG------AL-DLAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cCc-------chhHHHHHHHHhccchH-HHHHHHHHhc------cc-CchhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 432 33444455555443322 3333332222 11 11122233344445555666655555554443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.016 Score=75.14 Aligned_cols=354 Identities=15% Similarity=0.159 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-hH--HhHHHHHHhhcCCCChhh
Q 000201 635 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 635 ~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-~v--~~llp~L~~~L~~~~w~~ 711 (1866)
.+...+..+++...-...-.-..+++.|..++...+..+.-.+...+..+.-.-... .+ ..++|.|...+.+++...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 345556666665432111122367888888888888888888888888775322221 12 568999999999999999
Q ss_pred HHHHHHHHHHHHhhChh--hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-h--HHhHHHHHHHhhC-C
Q 000201 712 KQSSVQLLGAMAYCAPQ--QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E--IASLVPTLLMGLT-D 785 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~--~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~--i~~lv~~L~~~l~-d 785 (1866)
+..++.+|.+++....- ++.. ..++|.+..++.|+ ..|..|...|..++..-... . ....+|.+.+.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 99999999999975332 2222 37889999999875 45666777777776422211 1 1456777777653 3
Q ss_pred CChhHH-HHHHHHHhccccccCCcch-hhhHHHHH-HHhhcCCCHHHHHHHHHHHHHHhhhcCCC-cchhhhHhhhhHHH
Q 000201 786 PNDHTK-YSLDILLQTTFVNTVDAPS-LALLVPIV-HRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEV 861 (1866)
Q Consensus 786 ~~~~vr-~al~~L~~~~~~~~~~~~~-l~~l~p~L-~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-~~l~~~~~~ll~~L 861 (1866)
+++.+. +.+..+.+.+.......-. -...++.| .+.++.+++ .....+-|++..-+.. ..+.+|+.. +
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~----L 495 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGD----L 495 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHH----H
Confidence 444333 2233333211111000000 00112222 233333332 2334666776532111 122333333 3
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHhhcCCC-----Ch--hhHHHHHHHhcccCCC-HHHHHHHHHHHHHHHHHhChh-HH-
Q 000201 862 KKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTV-YF- 931 (1866)
Q Consensus 862 ~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-----~~--~~l~~~L~~~L~~~~~-~~~R~~a~~~L~~l~~~~g~~-~l- 931 (1866)
...+...+ -....+.++|.++...-++ .+ ..++||+.+.|..... ......++..+|.++..-... .+
T Consensus 496 ~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~ 573 (708)
T PF05804_consen 496 AKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLA 573 (708)
T ss_pred HHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 33344332 2256778888888743222 12 2589999999875432 335556666677665421111 11
Q ss_pred -HHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 932 -EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 932 -~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
..+++.+++.+++. +.+.--..+.+|..+..+-. .....+ .++...++..+.|.++.||..|-.++..+..
T Consensus 574 ~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 574 KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35667777766543 55555556666666665522 111121 4577888899999999999998888877664
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0076 Score=73.33 Aligned_cols=258 Identities=19% Similarity=0.124 Sum_probs=137.4
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-Ch-h-----
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GT-V----- 929 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g~-~----- 929 (1866)
+..++..+..|.++.||..|+.++-.+.+ |-+.-..+.....+.+.++. ..+|..|.+.+.-..... ++ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 44446666677777777777777777666 32222334444444444433 346777766655444433 11 1
Q ss_pred --HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH-H-------------------------------
Q 000201 930 --YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-V------------------------------- 975 (1866)
Q Consensus 930 --~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~-i------------------------------- 975 (1866)
..+..+..+-...++....+|-.+..+||.+-.....-+...+++ +
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 223444455555666667777766666665544333222111111 1
Q ss_pred -------------------HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHH
Q 000201 976 -------------------LPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1036 (1866)
Q Consensus 976 -------------------l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll 1036 (1866)
...++.++.|+..+||.+|..++..+...-+..+.. -+..+.+.+.|+...+|..++..+
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-ALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccHHHHHHHHHHHHH
Confidence 122333444555566666666666655432221111 223334444555555666666555
Q ss_pred HHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1037 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1037 ~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
..+..++ ..+.+.+..+..++.|.+..+|++.-++|+..--..
T Consensus 435 ~~Is~~l---------------------------------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d---- 477 (823)
T KOG2259|consen 435 TMISVHL---------------------------------AIREEQLRQILESLEDRSVDVREALRELLKNARVSD---- 477 (823)
T ss_pred HHHHHHh---------------------------------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc----
Confidence 5543221 123455666667788999999999998887532111
Q ss_pred HHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1117 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1117 ~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
.+.+.-++..+++.++ .-+.-|.....|++.+.++.+..
T Consensus 478 ~~~i~m~v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 478 LECIDMCVAHLLKNLG-KYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHHHHHhh-hCCCCcHHHHHHHHHHhccChhh
Confidence 2344455555555554 23444666788888877665443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00085 Score=81.91 Aligned_cols=238 Identities=18% Similarity=0.136 Sum_probs=151.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 696 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~l 696 (1866)
++.+...+....+...+..+..++. .+. .+ ..+..++..+.|+++.||..+..+|+.+-. ...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~-----~~~--~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a 118 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL-----AQE--DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQA 118 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh-----ccC--Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHH
Confidence 4556666644444455544444321 111 11 136778888999999999999999986532 456
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 776 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 776 (1866)
.+.|...++++++.+|..++.+++..-. .-.+.+...++|.++.||..|+.+|+.+... ..+
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~ 180 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-------LSE 180 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cch
Confidence 6778888899999999998888775221 2345677788999999999999999988642 345
Q ss_pred HHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 777 PTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 777 ~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
|.|...+.|+++.+| .++..+....- ....+.+.....+.....+..+..++... +. +
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al~~lG~---------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~--------~ 239 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAGLLAGS---------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG--------P 239 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------h
Confidence 566677888888888 45555543111 12233444433444444544444444333 22 2
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
..++.|..+++++. +|..++.++|.+.. +..+++|+..+.++. .+..+.+.++.|
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 46777777887754 88888888886543 457777777775432 566666666544
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0024 Score=75.45 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=113.0
Q ss_pred hhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
+.+..++..+.....||+..+|..|+++|+..+...+.+ +.+.++..++..|-++.+..+...++.+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 556667777777788999999999999999999976554 55667777777777766666888888888766655433
Q ss_pred h----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH-HHHHH---HHHHhhccCCChHHHHHHHHHHHH
Q 000201 929 V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVL---PAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 929 ~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~-l~~il---~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
. ++-++.-.+.....+.++.+|.+++.+|+.++...|...+.+ .+++. .+++-.+.|+++.|-.++-..+..
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 3 444555566677788899999999999999999988544333 33333 344556789999887666655555
Q ss_pred HHHhhccc
Q 000201 1001 LVEHYATT 1008 (1866)
Q Consensus 1001 i~~~~~~~ 1008 (1866)
+..++..+
T Consensus 414 c~p~l~rk 421 (533)
T KOG2032|consen 414 CYPNLVRK 421 (533)
T ss_pred cCchhHHH
Confidence 55554443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.088 Score=67.82 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=123.0
Q ss_pred HHhh-cCCCChhhHHHHHH-HHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 700 LLKG-LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 700 L~~~-L~~~~w~~r~~a~~-~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
+-.+ +.+++-+.|..|+. .|..|..+- .+ +.++|-+++.....+.++++-.---|..+++.-+ .+.--.++
T Consensus 23 ~~sg~l~s~n~~~kidAmK~iIa~M~~G~--dm----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavN 95 (757)
T COG5096 23 LSSGRLESSNDYKKIDAMKKIIAQMSLGE--DM----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVN 95 (757)
T ss_pred hccccccccChHHHHHHHHHHHHHHhcCC--Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHH
Confidence 3344 67777777777664 555666643 34 4555555555556679999999998998887543 34456788
Q ss_pred HHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhh
Q 000201 778 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 856 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ 856 (1866)
.+.+-++||++.+| -|+..+.... +...+..+++.+.+.++++++.||+.|+-++..+... ++ + -|.+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~--l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-D--LYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-h--hhhcc
Confidence 99999999999999 4777776522 2345678899999999999999999999999999873 21 1 12333
Q ss_pred -hhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 857 -LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 857 -ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
....+..++.|.+|.|-..|..++..+...
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566677778899999988888877776654
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.14 Score=64.14 Aligned_cols=364 Identities=18% Similarity=0.215 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..+.++.+.+.+-++.-...||.|+.+|..+.+....... ..+ |+.+.+.+ .|-.|+..-. .++..++......
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vg-a~G-mk~li~vL~~D~~D~E~ik---~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVG-AQG-MKPLIQVLQRDYMDPEIIK---YALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH-Hcc-cHHHHHHHhhccCCHHHHH---HHHHHHHHHHhcC
Confidence 5678888899888877788999999999999986633222 122 23333333 3333332222 1222222111100
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
=.|. -+.|+. .+-+...|....+... +..+..++..++..++.+|..++++|.++..+-|.++
T Consensus 95 d~~~----------v~dds~-qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~ 157 (970)
T KOG0946|consen 95 DSPE----------VMDDST-QSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL 157 (970)
T ss_pred cchh----------hcccch-hhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH
Confidence 0000 011221 3333444444444331 3456677888889999999999999999999988765
Q ss_pred Hh---hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCC-----hhHHHHHHHHH
Q 000201 731 SQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPN-----DHTKYSLDILL 798 (1866)
Q Consensus 731 ~~---~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~-----~~vr~al~~L~ 798 (1866)
.. .+|.-+..++.+|.|++.-+|..+.--|..+.+..++- .++.++..|...+.... --+.+|+..+.
T Consensus 158 q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 158 QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 44 45777888999999999999999999999888644321 22456667777765432 12346776655
Q ss_pred hc---------cccccCCcchhhhHHHHHHHhh-cCCCHHHHHH-----HHHHHHHHhhhcCCCcch------hhhHhhh
Q 000201 799 QT---------TFVNTVDAPSLALLVPIVHRGL-RERSAETKKK-----AAQIVGNMCSLVTEPKDM------IPYIGLL 857 (1866)
Q Consensus 799 ~~---------~~~~~~~~~~l~~l~p~L~~~l-~d~~~~vr~~-----a~~~l~~l~~~l~~~~~l------~~~~~~l 857 (1866)
.. -|-..-.-|.+..++|.+.-+= +...|...+- +.+++..+..- +.+... .-....+
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcch
Confidence 41 1111111233333334433222 1125655443 33444444331 111111 1122346
Q ss_pred hHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcCCC----------Chh----hHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 000201 858 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQGLSE 921 (1866)
Q Consensus 858 l~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g~~----------~~~----~l~~~L~~~L~~~~~~~~R~~a~~~L~~ 921 (1866)
+..|...+-++ ..+|+..+..+++.+++..... +++ .++-.++....+......|++++.++-.
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 77777777665 4578888877777777643211 122 2333344444444556688888887744
Q ss_pred HHHHhChhHHHHHHHHHHHHhccC-ChhHHhHHHHHHHH
Q 000201 922 VLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKY 959 (1866)
Q Consensus 922 l~~~~g~~~l~~ll~~l~~~l~~~-~~~vR~~al~~l~~ 959 (1866)
..-.- .+--..++..++....+. +..+..+.+.+.+-
T Consensus 397 ~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l 434 (970)
T KOG0946|consen 397 YLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGL 434 (970)
T ss_pred HHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHhh
Confidence 33211 011123444444444333 44666666665553
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0013 Score=80.42 Aligned_cols=239 Identities=16% Similarity=0.020 Sum_probs=144.7
Q ss_pred HHHHHHhhc-CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L-~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
.++.++..+ .+++..++..++..+..... +..+..++..+.|.++.||.++..+|+.+. .+ .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----~~---~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG----GR---Q 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----ch---H
Confidence 445555555 34445555555444431111 123666778888888888888888887653 22 3
Q ss_pred HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 775 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
..+.|...+.+++..+| .++..+.. + ...-.+.+...+++.++.+|..|+..++.+...
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~----r------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA----H------RHDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh----h------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 44556666677777777 34444432 1 011245677778899999999999999887641
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 933 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ 933 (1866)
..++.|...+.|.++.||..|+.+++.+.. +...+.+.........+ .+......++.. |.. .
T Consensus 178 --~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------~~A~~~l~~~~~~~g~~-~~~~l~~~lal~----~~~---~ 240 (410)
T TIGR02270 178 --LSESTLRLYLRDSDPEVRFAALEAGLLAGS-------RLAWGVCRRFQVLEGGP-HRQRLLVLLAVA----GGP---D 240 (410)
T ss_pred --cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHhccCcc-HHHHHHHHHHhC----Cch---h
Confidence 245556677999999999999998866532 12233333322222222 333222222211 332 4
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 000201 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~ 1002 (1866)
.++.+...++++. +|..++.+++.+.. +..++.++..+.|+. ++..|.+++..|.
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 5556666666543 88888888886643 236677888887654 8888888877765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0027 Score=77.74 Aligned_cols=212 Identities=25% Similarity=0.266 Sum_probs=150.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
..+.+.+.+.++ ++..|..+...++.+. -...+|.+...+.|.++.||..+..+++.+.. +.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 456666777766 6777777766533322 24688999999999999999999997766532 55
Q ss_pred HHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCC------------hHHHHHHHHHHHH
Q 000201 696 VLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH------------PKVQSAGQTALQQ 762 (1866)
Q Consensus 696 llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~------------~~VR~aA~~aL~~ 762 (1866)
.+|.+++.+. +.+|.+|..+...|+.+.... -+..++..++|.. ..+|..+..+|+.
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 6777777777 799999999999999776532 1334455566644 2578888888887
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 841 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~ 841 (1866)
++. ...++.+...+.++...+| .+...+....... ..+.+.+...+.+.++.+|..++..++.+.
T Consensus 176 ~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 176 LGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred cCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 764 2345667777778887887 4555555422211 356788899999999999999888877654
Q ss_pred hhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 842 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 842 ~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
. ....+.+...+.+.++.++..+..+.+
T Consensus 242 ~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 242 D------------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred c------------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 3 124566777788888888877766665
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.023 Score=70.36 Aligned_cols=321 Identities=16% Similarity=0.170 Sum_probs=159.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+.....+-+++|+..||-.+..-+-.+ =.++-+..++|.+...|++....+|+.|+.+++.+.... +.+-+--|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 444556667889999997765533322 234556888888888888888888888888888877752 2222222333
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+..+ +..+.+|.....|.-.|...- |+- .+..+...+. .++..+ +.+..++-.
T Consensus 176 i~~f--L~~e~DpsCkRNAFi~L~~~D-----~Er--Al~Yl~~~id-----------------qi~~~~-~~LqlViVE 228 (948)
T KOG1058|consen 176 IESF--LLTEQDPSCKRNAFLMLFTTD-----PER--ALNYLLSNID-----------------QIPSFN-DSLQLVIVE 228 (948)
T ss_pred HHHH--HHhccCchhHHHHHHHHHhcC-----HHH--HHHHHHhhHh-----------------hccCcc-HHHHHHHHH
Confidence 3222 345666777776665554321 111 1111111110 000000 111122112
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 897 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~ 897 (1866)
+++.....++..|..-.++ +..+|+..++.|+-.|+..+-.+.. .+..+.....
T Consensus 229 ~Irkv~~~~p~~~~~~i~~------------------------i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~ 282 (948)
T KOG1058|consen 229 LIRKVCLANPAEKARYIRC------------------------IYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAAS 282 (948)
T ss_pred HHHHHHhcCHHHhhHHHHH------------------------HHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHH
Confidence 2221111223333222223 3333333333333333222222111 0011111111
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 898 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 898 ~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
.+++.+....+..+..-...-|.++. ......+++++-.++..+.+++-++|..++...-.|...-. +.+++.
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN------vediv~ 355 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN------VEDIVQ 355 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc------HHHHHH
Confidence 12222211111112333333344433 23344677778888888999999999988877666654322 222332
Q ss_pred HHHhhc-------cCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 978 AILDGL-------ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 978 ~ll~~l-------~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
.+.+-+ .|++..-|..-.+++..+.-+|+..+ ..++|.+.+.+.|.|...-...+..+.+.+.+.
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC
Confidence 232222 23445568888888888777775432 235677777777778777666676666666554
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.031 Score=66.44 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhccc-cc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1158 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~-~~~~R~~A~~~L~~lv~~~~~~-~l 1158 (1866)
.++..+-....|++..+|..|+..++..+...|.....+.+.++..++..|.+. +.++...+..+|..+....... +.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344445556789999999999999999999999999999999999998888754 5688888999999888776543 44
Q ss_pred cchHHH---HhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHH---HHhhcCCcHHHHHH
Q 000201 1159 PSIIPI---LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRES 1221 (1866)
Q Consensus 1159 ~~llp~---L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l---~~~L~d~~~~vr~~ 1221 (1866)
+.++++ +.....+.+++.|.+++..++.+....++..-..|.+++...+ .-.+.|+++.|-.+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 444444 4445678889999999999998877666543334444444333 33567888876554
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.15 Score=63.97 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=83.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---ccCChhhHHH
Q 000201 1513 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA---LSTRVDPLVG 1589 (1866)
Q Consensus 1513 Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~---~~~~~~~~l~ 1589 (1866)
|.+.+.+.-.-+-|.+++.++..++...+..=.+-+..+-..+..| +.+.-+.+.|+.+.. ..+....|+.
T Consensus 396 L~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 396 LSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 4444444333456777777777777655543323333333333222 233344445555532 3355667888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1590 DLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1590 ~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
.+.+.+.-.+..+|.+++.||..+. ++. +...+.|...+..++.+.++++|..|...+..+-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFG--AQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHh--cCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 8877776667889999999999887 222 2345677888888999999999999888877765
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=75.67 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=90.7
Q ss_pred hcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHH
Q 000201 1718 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGP 1797 (1866)
Q Consensus 1718 ~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p 1797 (1866)
..|++.++|++|.+++..++..+... -.+..++..+..|+.| +.|+|.++..++..++..+|..+.++++.+++
T Consensus 36 ~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~ 109 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVE 109 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHH
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 46889999999999999999977543 2468899999999999 99999999999999999999999999999999
Q ss_pred HHHhhhcc--Ccchhh----------hhHHHHHHHh-hcccccchhHH-HHHHHhhhh
Q 000201 1798 ALAECLKD--GSTPVR----------LAAERCAVHA-FQLTRGSEYIQ-GAQKFITGL 1841 (1866)
Q Consensus 1798 ~l~~~~~~--~~~~vk----------~aae~a~~~l-~~~~~~~~~~~-~~~~~~~~~ 1841 (1866)
++-+.+.. +..+|| +++.|+..++ .++...+ ... .+.+|+..+
T Consensus 110 ~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~-~~~~~~~~f~~~i 166 (169)
T PF08623_consen 110 PLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAE-SSPNKWNEFVEWI 166 (169)
T ss_dssp HHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-S-SSH-HHHHHHHHH
T ss_pred HHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccc-cCHHHHHHHHHHH
Confidence 99988754 334454 4555888888 5665544 334 788877643
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=71.85 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchh---hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 574 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL---KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 574 ~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l---~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.-+.++++.|....++.....|+..|..++.-...+.+ ....++|.|..++..+.+..-..-|+.|+.++++.+++.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 35566777777665666777777777766642212222 223578999999999989888889999999999999976
Q ss_pred chhcHH-hHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 651 FEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 651 ~~p~v~-~llp~ll~~~-~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
..-.+. ..+|+++..+ .-.-.+|.+.+.+|+..|...-+...+ ..-+-..+.+|+==+-..++.|+-.-.+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554 4788877544 446778999999999999876554433 2223333444432234556677777777777765
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
.+-...+.+.+|.|..+|+..+.++-..+|-|+..++..+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 55455667888999999999899999999999999987665
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.24 Score=61.80 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccC
Q 000201 1091 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1170 (1866)
Q Consensus 1091 ~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1170 (1866)
.|.+.+-|+.-++.+...+.++|.. -..+++.+++.+++.++..-...+..+.+.+++++.- -..++..+.+.+.
T Consensus 369 ~d~~~~yRqlLiktih~cav~Fp~~----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-r~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 369 SDDNGKYRQLLIKTIHACAVKFPEV----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-RASIIEKLLETFP 443 (948)
T ss_pred cccchHHHHHHHHHHHHHhhcChHH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHhhh
Confidence 4567778999999999988888854 4455566666778888887777777788877775431 1222222332222
Q ss_pred -CCCccchhhHHHHHHHHHHh
Q 000201 1171 -DPSASRRQGVCIGLSEVMAS 1190 (1866)
Q Consensus 1171 -d~~~~vr~~a~~~L~~li~~ 1190 (1866)
-....+-.++++.+|+....
T Consensus 444 ~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 444 QIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred hhcccccchhHHHHHHHHHhh
Confidence 23456667888888876543
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.49 Score=62.49 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHhccC
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVS 1598 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~-d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l~~~ 1598 (1866)
.+++++.+|-.+|+.+.--.. .|...=.+.|...+. .|++.+|..+.-++|.++ .+..-++|..+-|...++++
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE 1010 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc
Confidence 457899999999997754222 255556667777777 569999999999999995 44445789999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCC
Q 000201 1599 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSP 1678 (1866)
Q Consensus 1599 ~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~ 1678 (1866)
++.+|.+++-.|..++-+.--++ ...+-. ...++.|+++.++..|-..+..|.+.- +.+-+++++++.++.+.
T Consensus 1011 ~~~vRkta~lvlshLILndmiKV----KGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILNDMIKV----KGQLSE-MALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHh----cccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 99999999999998886432211 122222 233578899999999998888887543 46778888888776554
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.43 Score=61.78 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=110.2
Q ss_pred CCChhHHHHHHHH-HHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH
Q 000201 586 SDKYGERRGAAFG-LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 586 ~~~~~~R~~A~~~-L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~ 664 (1866)
+.....|+.|..- ++.+..|- + + ..+++-+.+.+. ..|...+...-.=+...++.-+ ....-.++.+.+
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~--d-m--ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~k 99 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGE--D-M--SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQK 99 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCC--C-h--HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHh
Confidence 3334556665554 44555433 2 1 234555556555 3344444322222223333222 223356778888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~ 744 (1866)
-++|+++.+|-.|..++..+-. +.-+..+++.+.+.+++++..+|+.|+.++..+.+..++..... ..+..+..+
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l 174 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKEL 174 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHH
Confidence 9999999999999887766522 23348899999999999999999999999999998776654332 244456678
Q ss_pred ccCCChHHHHHHHHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
+.|++|.|..+|..+|..+-..
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999888654
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.67 Score=63.80 Aligned_cols=358 Identities=16% Similarity=0.159 Sum_probs=188.2
Q ss_pred HhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCc----chHHHHHHHHHhcCCC----cHHHHHH--HHhhhhh----
Q 000201 498 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP----KVHAVVDKLLDVLNTP----SEAVQRA--VSSCLSP---- 563 (1866)
Q Consensus 498 ~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~----~~~~l~~~l~~~l~~~----~~~v~~~--~~~~l~~---- 563 (1866)
.+|.+++ ..||--+.-|+..|.+-+.++.| .+..+|..++..+... ++.+.+. ..+.+..
T Consensus 57 ~~L~h~d------~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~ 130 (1266)
T KOG1525|consen 57 FLLKHKD------KDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC 130 (1266)
T ss_pred HHhcCCC------cChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH
Confidence 4555544 34888888888888887777655 4566777766665432 3322211 1111111
Q ss_pred ---hhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHH-HHhCCCcHHHHHHHHHH
Q 000201 564 ---LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE-GLADRNSAKRREGALLA 639 (1866)
Q Consensus 564 ---lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~-~i~~~~~~~~r~~al~a 639 (1866)
......+.+.++...+++-+.. ... .+-.-...|...+-.. .+.+ ...++..+.. .+.... ....+|...
T Consensus 131 l~~~l~d~~e~~~~~f~~f~d~~~~-~~~-~~v~~~~~i~~~li~e-~d~v-~~e~L~~ll~~lv~~~~--~~~~~a~~l 204 (1266)
T KOG1525|consen 131 LLMLLEDCQELVHELFRTFFDLARK-GHP-KKVFNMLDIAIMLITE-EDTV-QSELLDVLLENLVKPGR--DTIKEADKL 204 (1266)
T ss_pred heeeccchHHHHHHHHHHHHHHHhc-ccc-HHHHHHHHHHHHHHHh-hccc-hHHHHHHHHHHhccCCC--CccHHHHHH
Confidence 1111112233333333333322 211 1111122222222111 1122 2234444433 333322 122233333
Q ss_pred HHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHH
Q 000201 640 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719 (1866)
Q Consensus 640 l~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L 719 (1866)
-..+.+..+...++.+.+.+..-+..-......++..--+.+-.+. ...++.+-.++|.|...|.+++-.+|..|+.++
T Consensus 205 a~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 205 ASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344445555556666555443332211122333333334444442 234455677899999999999999999999999
Q ss_pred HHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH-hHHH--HHHHhhCCCChhHHHHHHH
Q 000201 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-SLVP--TLLMGLTDPNDHTKYSLDI 796 (1866)
Q Consensus 720 ~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~-~lv~--~L~~~l~d~~~~vr~al~~ 796 (1866)
|.|...-..++....+.++..+++-+.|.++.||-+++++..++.- .+|.+. ...- .+.....|++..+|. ..
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~--~~~~~~~~~~~~~~l~~~~~D~~~rir~--~v 359 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL--NNPSIAKASTILLALRERDLDEDVRVRT--QV 359 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh--cCchhhhHHHHHHHHHhhcCChhhhhee--eE
Confidence 9999877777778889999999999999999999999999887753 355552 2222 233333344433331 11
Q ss_pred HHh-ccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----CCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 797 LLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 797 L~~-~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~-l----~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
++. +.+. ...-.....++..+...+.|..|.||..|..-+..+... . ...+...+-...|-..+..++-..+.
T Consensus 360 ~i~~~~v~-~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~ 438 (1266)
T KOG1525|consen 360 VIVACDVM-KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDL 438 (1266)
T ss_pred EEEEeehh-HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccc
Confidence 100 0000 000011122556666788899999999999888887763 1 11133334444444555555554444
Q ss_pred hHH
Q 000201 871 EVR 873 (1866)
Q Consensus 871 ~vR 873 (1866)
+.|
T Consensus 439 ~~r 441 (1266)
T KOG1525|consen 439 DDR 441 (1266)
T ss_pred cHH
Confidence 555
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=74.67 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000201 1479 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 1558 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~ 1558 (1866)
..+.+..|..-|-.+...-+-.....|..+|+-.++.++++..+...|..+|..|..+++.-+..+..+..-.+..++.+
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 34556666554444443322445667788888889999999668889999999999999988888888888888888899
Q ss_pred hcCCCHHHHHHHHH-HHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Q 000201 1559 LQDSTRTVRSSAAL-ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 1637 (1866)
Q Consensus 1559 l~d~~~~vR~~Aa~-aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l 1637 (1866)
-.|++.+|-..|.. |+-.+..+.|- .-+..+...+.+.|...-..+++.+..++........-..++.|.+.+.+..
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay 457 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY 457 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh
Confidence 99986555445554 45555555442 2233444444445555666778889999988876644477888899888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 000201 1638 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 1671 (1866)
Q Consensus 1638 ~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~l 1671 (1866)
++.+..||..+..||-++....+.+.+.+.++.+
T Consensus 458 ~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred cCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8999999999999999999999977788877644
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.12 Score=65.29 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=112.2
Q ss_pred HHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhh-HHh-hhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccch--h
Q 000201 698 PSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ-LSQ-CLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--E 771 (1866)
Q Consensus 698 p~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~-~~~-~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~ 771 (1866)
..|+++|... +...+..++.-|..+.....+. +.. ..+.++|.|+.+|++. +.++...||+||..+++++... .
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3455566554 4555555554444444332222 221 2357899999999875 4889999999999999988642 1
Q ss_pred H--HhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccC---CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 772 I--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTV---DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 772 i--~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~---~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+ ...||.|+..+..-.. .+. .++.+|-.+.-.|.. .+.-+..++ ..+.==+..+++.|..+..|+|+.+
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L----sylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVL----SYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 3467777765543211 121 233333222222211 111111111 1121124578899999999999976
Q ss_pred CCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 845 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 845 ~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
.. +++. |.-..+|.|..+++..+...-+.++.|+..+++.+..
T Consensus 326 ~s-d~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 326 RS-DEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CC-ccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 43 4544 4455889999999988888888899999999987643
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.14 Score=57.38 Aligned_cols=253 Identities=16% Similarity=0.177 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcc-ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhH----hhHHHHHHHhhcCCc
Q 000201 1141 VAGRALGELVRKLGE-RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1215 (1866)
Q Consensus 1141 ~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~~ 1215 (1866)
....||.++.+...+ .+.|.++|.+..++..++..++.-+|..++.+++.+....+.+.+ .++++.+..++..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367788888776543 478999999999999999999999999999999988755554433 578888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHH
Q 000201 1216 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 1295 (1866)
Q Consensus 1216 ~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~ 1295 (1866)
.+|-.+|.+.+.++... +..++-+.| ++..+..-+..+.. +.+ +..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaa----kcn---------------diaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAA----KCN---------------DIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHh----hhh---------------hHHHHHHHH
Confidence 99999999888877532 111111111 11111111111100 000 001112222
Q ss_pred HHHHHhCCC--chh--hHhhHHHHHHHhcCC-CCHHHHHHHHHHHhHhhhc-cchhc--HHHHHHHHHhccC--CCchhH
Q 000201 1296 ALAEVAGPG--LNF--HLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLV-IDEEG--VESLVSELLKGVG--DNQASI 1365 (1866)
Q Consensus 1296 ~La~~~g~~--l~~--~l~~il~~L~~~l~~-~~~~vr~~a~~~l~~l~~~-~~~~~--~~~ll~~L~~~l~--~~~~~v 1365 (1866)
-+.+.+.-. ... .-..++..|..-++. ++.-++...++....+... .+.++ ...+++.+...+. |.+|--
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 222211100 000 012334444444543 4444554444444444331 12222 2334455544443 344555
Q ss_pred HHHHHHHHHHHHhhc------cchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1366 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~------~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
+--+....+.|+.+. +...-..++..+...+.++...|+...++|..+++.+..+.
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 555667777776432 22233344556666677777778888899999998876543
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0007 Score=68.64 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
++|.+.+.|.+.+|+.|..++.+|+.++...+......+. .++|.+.++++|+++.|+..|+++|.+++...... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HHH
Confidence 6777888888888999999999999999876554444333 89999999999999999999999999998643210 000
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000201 775 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 841 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~ 841 (1866)
+ .-..++|.+.+.+.+.+.+++..++.++.+++
T Consensus 87 ----~------------------------------~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 ----V------------------------------LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----H------------------------------HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 00124555556666666778888888877765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.012 Score=67.58 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHhhhhccC---CcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh---hhhHHHHHHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKD---DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ---DEAPTLVSRLLDQLM 584 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~---~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~---~~~~~~l~~ll~~L~ 584 (1866)
+.+|.+++.+|..+...++++ ...++.++.-+...+.+.. .+..+ ..++..++.... +.....+..+++...
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKMKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHhCC
Confidence 689999999999999887753 2346778888888885443 34443 666666663221 223444444444322
Q ss_pred cCC-ChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHH
Q 000201 585 KSD-KYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 661 (1866)
Q Consensus 585 ~~~-~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ 661 (1866)
-.. ....|....+-+..++.... +.+. ..+.+..+.+.++.++||+.-..+...+..+..... +.++...++..
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~ 167 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDV 167 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHH
Confidence 111 23467777777777776542 1111 125677777889999999987777776666666665 36677777777
Q ss_pred HHHHc--------CCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh-hHHh
Q 000201 662 LLVAF--------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQ 732 (1866)
Q Consensus 662 ll~~~--------~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~-~~~~ 732 (1866)
+...+ +|+...-|+.-..++..++...+ .--+..+|.+++.|.+....+|..+++.|...+...+. .+..
T Consensus 168 ~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~ 246 (262)
T PF14500_consen 168 FSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSP 246 (262)
T ss_pred hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 66554 35555667777777777765332 22378999999999999999999999999998887654 4666
Q ss_pred hhcchhHHHh
Q 000201 733 CLPKIVPKLT 742 (1866)
Q Consensus 733 ~l~~iv~~l~ 742 (1866)
+...|+..+-
T Consensus 247 ~~~~iw~~lk 256 (262)
T PF14500_consen 247 HWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00079 Score=68.25 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
++|.+...+.+.+..+|..+..++..++...+. ..+ ..++|.+.+.|.+++++++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888899999999999999999875322 222 3789999999999999999999999999998775433322
Q ss_pred h-cchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 734 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 734 l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
. ..+++.+.+.+++.+..+|..++++|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 368999999999999999999999999876
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.38 E-value=1 Score=58.89 Aligned_cols=167 Identities=20% Similarity=0.248 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChh
Q 000201 713 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDH 789 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~ 789 (1866)
+.++.+|.++++.......-.-..+++.|+++|+..+.++.-.+...|..++-.-.|. .+ ..++|.|.+.+..++..
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 3567788899987655544444689999999999999999999999999988544443 22 56899999999877765
Q ss_pred HH-HHHHHHHhccccccCCcch-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-
Q 000201 790 TK-YSLDILLQTTFVNTVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV- 866 (1866)
Q Consensus 790 vr-~al~~L~~~~~~~~~~~~~-l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~- 866 (1866)
.. .++..|.+.+|....-... -..++|.+...+.+. +.+..+..++.+++.- .+.+.+-.|.+ .+|.+.+.+.
T Consensus 347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~Td-cIp~L~~~Ll~ 422 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTD-CIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcc-hHHHHHHHHHh
Confidence 54 6888888776654432211 134678888888765 3556678888888752 12223333333 5666666543
Q ss_pred CCCHhHHHHHHHHHHHH
Q 000201 867 DPIPEVRSVAARAIGSL 883 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l 883 (1866)
.+.+.+...++..+-.+
T Consensus 423 ~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 423 NSEEEVQLELIALLINL 439 (708)
T ss_pred CCCccccHHHHHHHHHH
Confidence 34555554443333333
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0005 Score=65.24 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=68.9
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 659 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 659 lp~ll~~~-~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+|.++..+ +|+++.||..+..+++.+- -+..+|.+.+.+++++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46677777 8999999999999888432 24678889999999999999999999997742 467
Q ss_pred hHHHhhhccCC-ChHHHHHHHHHHH
Q 000201 738 VPKLTEVLTDT-HPKVQSAGQTALQ 761 (1866)
Q Consensus 738 v~~l~~~L~D~-~~~VR~aA~~aL~ 761 (1866)
++.+.+.+.|+ +..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77888877664 5667999999885
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.01 Score=70.18 Aligned_cols=187 Identities=25% Similarity=0.214 Sum_probs=133.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC--CC---Ch
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--EE---NF 892 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g--~~---~~ 892 (1866)
.+..+.+++...|..+...+..+...--.++.+......++..+.+.++.+..+-+..|.++++.++-.+| ++ .|
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34455677789999988877777653222234455667789999999987777777789999999999877 32 67
Q ss_pred hhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhC--hhHHH---HHHHHHHHHh--c----------cCChhHHhHHH
Q 000201 893 PDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALG--TVYFE---HILPDIIRNC--S----------HQRASVRDGYL 954 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g--~~~l~---~ll~~l~~~l--~----------~~~~~vR~~al 954 (1866)
..+.|.|...+.+.. ....|..++.+|+-++-..+ .+... +.|..++... . .+++.+..+++
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 788888888887654 34567777777766544333 23333 3344332221 1 12457889999
Q ss_pred HHHHHhhhhhch-hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 000201 955 TLFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1004 (1866)
Q Consensus 955 ~~l~~L~~~~g~-~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~ 1004 (1866)
.+|+.|...++. .+..++...+|.+...|..++.+||.+|-+++..+.+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999988875 56777888999999999999999999999988877654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0071 Score=65.82 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC
Q 000201 1563 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1563 ~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~ 1641 (1866)
|+.||..+..++|.|+ .+..-++++++.+...++++++.+|..++..|..++...--++ ...++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHcCCC
Confidence 5689999999999995 4555689999999999999999999999999999987643333 3444444445568899
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccC
Q 000201 1642 DHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 1676 (1866)
Q Consensus 1642 ~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~ 1676 (1866)
+.+|..|..++..+.....++.+...+.+++..++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999887444567777777665443
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=64.17 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000201 1479 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 1558 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~ 1558 (1866)
++.+|..+..++|+++.+. +..+.||. +.+...+.|. ++.||..++.+|..|+..- +...-++++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~----~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYL----PNLYKCLRDE-DPLVRKTALLVLSHLILED---MIKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHH----HHHHHHHCCC-CHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHH
Confidence 3678999999999999887 45555554 4456777775 7899999999999998742 222336777888899
Q ss_pred hcCCCHHHHHHHHHHHHHHHhc-cC-ChhhHHHHHHHHhcc
Q 000201 1559 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 1597 (1866)
Q Consensus 1559 l~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~~l~~L~~~l~~ 1597 (1866)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366777888777754
|
|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.76 Score=56.31 Aligned_cols=274 Identities=12% Similarity=0.208 Sum_probs=152.5
Q ss_pred hhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhh--hhccCCcc-hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhH
Q 000201 490 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK--HLAKDDPK-VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 566 (1866)
Q Consensus 490 ~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~--~l~~~~~~-~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~ 566 (1866)
..++..+..+|+..+..+ +..-..++.++++=.+ ++.++.-. ...++...+..++ +...-..+.+|+..+.+
T Consensus 152 ~~~L~~l~~lLe~~~l~~---~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKS---SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLY 226 (559)
T ss_pred HHHHHHHHHHHhhcCCCh---hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHH
Confidence 455555666666544432 2344556666655433 33332200 1134444555555 33566677777665554
Q ss_pred hhhhh-----h-------HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh-hcchHHHHHHH--HhCCCcHH
Q 000201 567 SMQDE-----A-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREG--LADRNSAK 631 (1866)
Q Consensus 567 ~~~~~-----~-------~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~-~~~ii~~L~~~--i~~~~~~~ 631 (1866)
...+. . ...++..+..-...++.+.+.+-+.-+..+....--.... +.+-++.+.-. .....++.
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchh
Confidence 43311 1 1223334444444566666665555555544422100000 11222222111 13334555
Q ss_pred HHHHHHHHHHHHHHHhC--------cCchhcHHhHHHHHHHHcCCC------------CHHHHHHHHHHHHHHHHhhcHh
Q 000201 632 RREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ------------VVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l~--------~~~~p~v~~llp~ll~~~~D~------------~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
.-+.....+-.+.+.+- ..|.||+.+++..+..-..=+ -..-|....+.++.++..+++.
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~ 386 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD 386 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 55555555555555432 247899988888887665422 2357788888888887777665
Q ss_pred hH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-
Q 000201 692 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 769 (1866)
Q Consensus 692 ~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~- 769 (1866)
.. +.+.-.+.+ .+.+|+.-.+++-.+..++...+..-...+|.++..+.++=.- ..+|..++--++.+.+++..
T Consensus 387 e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q--~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 387 ECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ--APLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred HHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc--hhHHHHHHHHHHHHHHHHHhC
Confidence 43 555444444 5678999999999999999987665555555555544443222 33999999999999988863
Q ss_pred hhH
Q 000201 770 PEI 772 (1866)
Q Consensus 770 ~~i 772 (1866)
|+.
T Consensus 463 p~~ 465 (559)
T KOG2081|consen 463 PEL 465 (559)
T ss_pred cHH
Confidence 444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=1 Score=56.50 Aligned_cols=171 Identities=25% Similarity=0.295 Sum_probs=114.3
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL-LSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l-l~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
+..++++..+ +.|.|+-.|..-.+.++.-...++. ...++.|+.. .+|.+.+||.+|.-+|+-++-+.|.
T Consensus 518 e~Ad~lI~el---~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 518 EDADPLIKEL---LRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhhHHHHHHH---hcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3456666665 4577899999888877755433321 3456666665 7899999999999998877644332
Q ss_pred chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhh
Q 000201 1424 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 1503 (1866)
Q Consensus 1424 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~ 1503 (1866)
.+|.++..+. .+-++-+|..++.+||-.|..++ .+
T Consensus 589 -~~~s~V~lLs-----------------------------------------es~N~HVRyGaA~ALGIaCAGtG---~~ 623 (929)
T KOG2062|consen 589 -QLPSTVSLLS-----------------------------------------ESYNPHVRYGAAMALGIACAGTG---LK 623 (929)
T ss_pred -hchHHHHHHh-----------------------------------------hhcChhhhhhHHHHHhhhhcCCC---cH
Confidence 2333332221 12357789999999999887764 22
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000201 1504 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574 (1866)
Q Consensus 1504 ~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aL 1574 (1866)
.. ..++.||. .|. ..=||..|+-+++-+..+.....-|-+..+...+.+.+.|.+++.-..-..+|
T Consensus 624 eA-i~lLepl~---~D~-~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 624 EA-INLLEPLT---SDP-VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred HH-HHHHhhhh---cCh-HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22 23334443 342 45699999999998888877777888888888888888888765444333333
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=69.82 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=83.8
Q ss_pred ccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH---HHhc
Q 000201 1464 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 1540 (1866)
Q Consensus 1464 l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L---~~~~ 1540 (1866)
.+..+|+|.+|+......-+-.|..++.+++...+++.+.|.+++++.|+.+.+..+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 457899999999999888899999999999998558889999999999999999986 889999999999999 6678
Q ss_pred CCCCCCchHHHHHHHH
Q 000201 1541 GIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1541 ~~~~~~~lp~L~~~l~ 1556 (1866)
|..+.||+.|+++.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999876
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.042 Score=69.37 Aligned_cols=221 Identities=22% Similarity=0.274 Sum_probs=144.8
Q ss_pred hHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 858 l~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
.+.....+.|+.+.+|..+...+..+++.-... .-..++...++.+++++++ +-..+++++..++..... .+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy~e----~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVYPE----DI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhcch----hh
Confidence 444556678899999999999999999854322 2346778888899888776 667788877777776544 45
Q ss_pred HHHHHHH-hcc---C--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 935 LPDIIRN-CSH---Q--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 935 l~~l~~~-l~~---~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+|.+.+. .+. . +..+|-| .++..+....|+-+..|...++..++.+..|++...|..++..++.++......
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 5555552 221 2 3445555 899999999999999999999999999998887777776666665554322110
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH-
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY- 1087 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~- 1087 (1866)
+.+.+.+++..+.
T Consensus 882 ------------------------------------------------------------------vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 882 ------------------------------------------------------------------VSDFFHEVLQLILS 895 (982)
T ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHH
Confidence 0011112222222
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH----HHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV----LMNTLISSLA-SSSSERRQVAGRALGELVR 1151 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~----l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~ 1151 (1866)
....|.+..+|++|++++..+-..+++.+-+++.. +...+..... +++...|..|..|+.++-.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 12467888999999999999998888765554322 2222222222 4455567777766665543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0017 Score=61.60 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.9
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChh
Q 000201 815 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893 (1866)
Q Consensus 815 ~p~L~~~l-~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~ 893 (1866)
+|.|.+.+ ++.++.+|..++.+++.+.. +..++.+...++|+++.||..|+.+|+.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 46677777 88899999999998885432 3578888899999999999999999998742 5
Q ss_pred hHHHHHHHhcccCCCHHHHHHHHHHHH
Q 000201 894 DLVSWLLDALKSDNSNVERSGAAQGLS 920 (1866)
Q Consensus 894 ~l~~~L~~~L~~~~~~~~R~~a~~~L~ 920 (1866)
..++.|.+.+.++.+..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887777767888887775
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0049 Score=68.89 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=129.4
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
...+...+..|.+++|..+..++..+..++...++.+...|..++..+++-++...+.|..+||.+++.+.....+...+
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788999999999999999999999899999999999999999999999999999999999999887654333
Q ss_pred ---hHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcc
Q 000201 774 ---SLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 774 ---~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~ 849 (1866)
.++-.|+......+..+|+ +-+.|..... ...-..+++.|..++...++.+|..++..+.+....++-...
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~-----~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~ 241 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVN-----HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPV 241 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh-----ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccch
Confidence 3333333332333445663 4444433111 123345777888888888999999998888777765553333
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
..++...+.+.+.+-+.|.-+.+|+.|-..
T Consensus 242 ~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 242 LLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 445666677777777777777766554433
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.024 Score=67.16 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=133.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhh-cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--CCCC
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALK 1545 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~-~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~--~~~~ 1545 (1866)
.-.++.+.......|+.++..+..+... ...+.+......++..+.+.+... ..+-+..++.+++.++-.+| ....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445556666788999999888877743 324556666677888888888654 34667788899998888866 5555
Q ss_pred CchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc-CChh------hHHHHHHHH--hcc----------CChhHHH
Q 000201 1546 PFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALS-TRVD------PLVGDLLSS--LQV----------SDAGIRE 1604 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~~~-~~~~------~~l~~L~~~--l~~----------~~~~vr~ 1604 (1866)
.++..+.|.+.+.+.|. +..+|..++.|||.+.-+. ...+ ..+..+... .+. +++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 67788888888888887 4578889999999874332 2222 222222221 111 1357999
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000201 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 1658 (1866)
Q Consensus 1605 ~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~ 1658 (1866)
+++.++.-++...+..-........++.+...+.+++-+||.+|.++|.-+...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988876423366677778888888999999999999999877643
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.023 Score=62.22 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=128.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
+..+.+.+.|.+.-.....+-++++.. ...-+|.+...|.+ ..+-+|+.|..+||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ-------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc-------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 344555555555444444444444432 23445666666654 346778888888877662 23
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHH
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.+.+.+..+|+...|+..|..|+.++-..-.-..+....| +.. .||... ....-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p-~~S--vdPa~p--------------------~~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSP-YIS--VDPAPP--------------------ANLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCc-ccc--CCCCCc--------------------cccccHH
Confidence 44455555677778888877777776632110000000000 000 233211 0000011
Q ss_pred HHHHhhcCC-CH-HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 817 IVHRGLRER-SA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 817 ~L~~~l~d~-~~-~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
.+...+.|. .+ --|..|.-.+-++.. +.-+..+.+.+.+.+.-.|..++.+||.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 222222221 11 112233222222211 2245566677777788888888888887665 33
Q ss_pred HHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 895 LVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 895 l~~~L~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
-+|.|.+.|.+. +.+-+|..++.+||.++. ++.++.+.+.+.++.+-+|+++..+|..+--.-++.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 455555555432 334588899888887654 3445566777788888899888777765544334443
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.18 E-value=3.4 Score=60.78 Aligned_cols=256 Identities=21% Similarity=0.279 Sum_probs=152.8
Q ss_pred hcCCCCHHHHHHHHHHHhHhhhccch---------hcHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHhhccchhhh--
Q 000201 1319 AMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVD-- 1386 (1866)
Q Consensus 1319 ~l~~~~~~vr~~a~~~l~~l~~~~~~---------~~~~~ll~~L~~~-l~~~~~~vR~~a~~~l~~l~~~~~~~~~~-- 1386 (1866)
.+...+.++|..+..++..++..... +.+..++..+... +.+.++.+|......+. ..+.+
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-------~~~~~~l 561 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-------ERFDAQL 561 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-------cchhhhh
Confidence 44556677877765544444432111 1244444444433 45677777776666655 11111
Q ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhh-hhhhhhh--cCCc--cccCCc--C
Q 000201 1387 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR-DKERRKK--KGGP--ILIPGF--C 1459 (1866)
Q Consensus 1387 ~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~-~~~~~~~--~~~~--~~l~g~--~ 1459 (1866)
--+..+..++..+.|..-..+..+...++++....++..++.+............ +...+.. .+.. ..+.+- -
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 1246667788888888888888888888877766554444444333322221110 0000000 0000 000000 0
Q ss_pred CCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 000201 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1460 ~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~ 1539 (1866)
...++.+++-.++..+.+++...-..+..+++.++... +...+.++...+..+...+++..+...|.+++.+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~-g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG-GEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc-cchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 00123334444444455555566667889999999877 56676777767777777787776778899999999999998
Q ss_pred cCCCCCCch--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccC
Q 000201 1540 GGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 1582 (1866)
Q Consensus 1540 ~~~~~~~~l--p~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~ 1582 (1866)
.|-.+.|+. |.++..+..-+... ...+|..+...+|.+....+
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 887777775 88888887776665 77899999999996644433
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=2.7 Score=58.67 Aligned_cols=183 Identities=18% Similarity=0.106 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC---ChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc
Q 000201 669 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745 (1866)
Q Consensus 669 ~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~---~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L 745 (1866)
..+.+|+....++.++......+....++......+.|. ..+.+.++..+++.+.+..+......+...+..+.++.
T Consensus 64 ~~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~ 143 (2067)
T KOG1822|consen 64 AGPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLV 143 (2067)
T ss_pred CCchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHH
Confidence 467788888888888888744444455555555555543 46788889999999998887776666666677777777
Q ss_pred cCCChHHHHHHHHHHHHHHhhccch-hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 824 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d 824 (1866)
+-....+|......+....+..+.. .... ....+.-.....+.+
T Consensus 144 k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~-----------------------------------~~k~i~l~~k~~lld 188 (2067)
T KOG1822|consen 144 KTNESFVRQEIMITLHNALKGMGGTSAATA-----------------------------------THKAIRLIAKNSLLD 188 (2067)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccchHHHH-----------------------------------HHHHHHHHHhhhhhh
Confidence 7666677777766666655443310 0000 011111122223345
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
++..+|..+..++..+... +.+.-...-++..-....+...+..+++|...+++++.+....
T Consensus 189 ~s~~v~iaa~rc~~a~s~~-~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 189 RSFNVKIAAARCLKAFSNL-GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred hhHHHHHHhHHHHHHHHhh-cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 5556777777776666553 2211112223444445555667788999999999999998754
|
|
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=2.7 Score=58.67 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHhCcC
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~--~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.+....+...+.....+..|+-...+++.+... |.. +..+..+......+.+. +++....++..+++..-+..|+.
T Consensus 50 ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~-f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 50 LKLEQQLISRLTNGAGPPTRKLISVAIARLISN-GDS-FSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cch-hhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 455666777777777788999999999999886 432 22233444444444443 55667778888888888888876
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----h-hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----Q-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~----~-~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
...-....+.++.+..+..+..+|.....++......++. + ..+.+.-.....+.+.+..+|.++..++.++...
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 5555666777777777777788888777766666555542 1 1255666666677778888999999999988876
Q ss_pred ChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 726 APQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 726 ~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
.+..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 54433 3344555556677788899999999999999988655
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00083 Score=56.99 Aligned_cols=54 Identities=31% Similarity=0.319 Sum_probs=50.4
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
|.+|..++.+++.++...+..+.+|++.++|.+...+.|+++.||.+|..++..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999988764
|
... |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.023 Score=71.59 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=144.2
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1014 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~ll 1014 (1866)
+...+..+.++.+.+|.+++..+..+.+.-.+.-.-....++...+..++|++..|--++.++...+++.++++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 34445566778889999999999988874433222345678899999999999999889998888888887776555544
Q ss_pred HhHhcccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhch---hhhHHHHHHHHHh
Q 000201 1015 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1089 (1866)
Q Consensus 1015 p~l~~~l~d~--~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~---~~~~~vl~~L~~~ 1089 (1866)
....+.-... +.+++. -+.+..++ ..+|+ .++..++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkV--GEai~k~~-------------------------------qa~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKV--GEAILKVA-------------------------------QALGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehH--HHHHHHHH-------------------------------HHhccHHHHHHHHHHHHHHHh
Confidence 4333222111 223322 23333333 22232 3445555555556
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccch-------
Q 000201 1090 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSI------- 1161 (1866)
Q Consensus 1090 ~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~l------- 1161 (1866)
..|++..-|..++..++.++..+...+.+++..++..++.... +.+.-+|.+|+..+..+....|...+|-.
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6788888999999999999886665566677777766665443 67889999999999999999887655522
Q ss_pred HHHHhcccC-CCCccchhhHHHHHHHH
Q 000201 1162 IPILSRGLK-DPSASRRQGVCIGLSEV 1187 (1866)
Q Consensus 1162 lp~L~~~L~-d~~~~vr~~a~~~L~~l 1187 (1866)
...+..... +++...|.-+|.++-++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 222222222 33444566666666554
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.007 Score=75.11 Aligned_cols=248 Identities=14% Similarity=0.162 Sum_probs=167.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 665 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~ 665 (1866)
-++..+|..--.+|...+.... +.+....+.+.|...+.-...... .+..+-.+...+. -++|...++|.++++
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~p-e~i~~~kvlp~Ll~~~~~g~a~~~---~ltpl~k~~k~ld--~~eyq~~i~p~l~kL 338 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFP-EEIIASKVLPILLAALEFGDAASD---FLTPLFKLGKDLD--EEEYQVRIIPVLLKL 338 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhccccchh---hhhHHHHhhhhcc--ccccccchhhhHHHH
Confidence 3445566666666666555543 333345666766665543221011 1111111122222 255888899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~ 744 (1866)
|+-++..||-.-..-+...+..++++.+ +.++|.+..++.|.+.-.|..++..+..++.+....... .+++..+..+
T Consensus 339 F~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln--~Ellr~~ar~ 416 (690)
T KOG1243|consen 339 FKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN--GELLRYLARL 416 (690)
T ss_pred hcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc--HHHHHHHHhh
Confidence 9999999999999999999999999888 899999999999999999999999999999886655211 2666677777
Q ss_pred ccCCChHHHHHHHHHHHHHHhhccchhHHh-HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~-lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
-.|.++..|....-||+.++..+.....+. +...+.+.+.||-...| .++..+..+ ...+........|+|.+.-..
T Consensus 417 q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at-~~~~~~~~va~kIlp~l~pl~ 495 (690)
T KOG1243|consen 417 QPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAAT-QEYFDQSEVANKILPSLVPLT 495 (690)
T ss_pred CccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhc-ccccchhhhhhhccccccccc
Confidence 779999999999999999988764322222 23345667788876666 333333331 112223334556777777777
Q ss_pred cCCCHHHHHHHHHHHHHHhh
Q 000201 823 RERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~ 842 (1866)
-|.+..+|..|...+..+..
T Consensus 496 vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 496 VDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cCcccchhhHHHHHHHHHHh
Confidence 78888888887776666554
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.06 E-value=1.3 Score=53.88 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=135.6
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-c--Hh---hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-S--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 724 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l-~--~~---~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~ 724 (1866)
|+..+..++..++.+-+.+ .+-+.....+.+++.+. + ++ -+..++..++.++++++-.+|+-++++|.-+..
T Consensus 43 f~~~flr~vn~IL~~Kk~~--si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 43 FSEEFLRVVNTILACKKNP--SIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred hHHHHHHHHHHhhccccCC--CcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 5555666777777665543 33444555666666532 1 12 247788888999999999999999999999998
Q ss_pred hChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHHH-HHHHHHhccc
Q 000201 725 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTTF 802 (1866)
Q Consensus 725 ~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr~-al~~L~~~~~ 802 (1866)
+..+--....+.+...+.+-+-|..+.||..|+.+|..+-+.-.|++. .+...|...+ +||+..||. ++-.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v--- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV--- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee---
Confidence 876543344557777888888899999999999999999876666543 2233333333 489888885 4433321
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHH-HHH---HHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIV---GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~-~~l---~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
-....|.++....|-+...|+..- .++ |.++.. .+.+ .+. .+...+.|....|+.++..
T Consensus 197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l-----si~k---ri~-l~ewgl~dRe~sv~~a~~d 259 (885)
T COG5218 197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL-----SIDK---RIL-LMEWGLLDREFSVKGALVD 259 (885)
T ss_pred --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-----cccc---eeh-hhhhcchhhhhhHHHHHHH
Confidence 122457777777776655555421 222 222221 1111 122 4556778888899988888
Q ss_pred HHHHHH
Q 000201 879 AIGSLI 884 (1866)
Q Consensus 879 aL~~l~ 884 (1866)
++..--
T Consensus 260 ~ia~~w 265 (885)
T COG5218 260 AIASAW 265 (885)
T ss_pred HHHHHh
Confidence 876543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.03 Score=63.91 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH--hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-H
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-V 693 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~--~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v 693 (1866)
+..|...++..+++..++.++.+++..+.... -...+. ..++.+...+.++++.||..|..++..++....... +
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 45666677777788888888888887654221 133343 468899999999999999999999998866554433 4
Q ss_pred HhHHHHHHhhcCCCCh--hhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 694 KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w--~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+..++.+.+...+..| .++.+++.+|..|.-. ......+...+|.++.++...+..+|..+.+.|..++.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 6778888877666545 6777899999988643 22222334566777788888888899899888888875
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0089 Score=74.26 Aligned_cols=247 Identities=15% Similarity=0.172 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHH
Q 000201 750 PKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828 (1866)
Q Consensus 750 ~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~ 828 (1866)
.+-|..-...|....+.+....+ ..++|.|+..+.=.+ .....+..+....... ...++-..++|.|.+++...+..
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~~~~ltpl~k~~k~l-d~~eyq~~i~p~l~kLF~~~Dr~ 345 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AASDFLTPLFKLGKDL-DEEEYQVRIIPVLLKLFKSPDRQ 345 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cchhhhhHHHHhhhhc-cccccccchhhhHHHHhcCcchH
Confidence 44444444444444443433333 556777766654222 1111222222211111 11235667999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCC
Q 000201 829 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDN 907 (1866)
Q Consensus 829 vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~ 907 (1866)
+|....+-+..++..++. ..+.+++.|.+...+.|.++.+|+...+++..++..+++..+ .+++..+.. ++.++
T Consensus 346 iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar-~q~d~ 420 (690)
T KOG1243|consen 346 IRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLAR-LQPDE 420 (690)
T ss_pred HHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHh-hCccc
Confidence 999988888888776654 335678999999999999999999999999999999998733 456666544 34455
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC
Q 000201 908 SNVERSGAAQGLSEVLAALGTVYFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 986 (1866)
Q Consensus 908 ~~~~R~~a~~~L~~l~~~~g~~~l~~ll~-~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~ 986 (1866)
....|.....+++.+...+....-+.++. .....+.++-..-|.+....+......+... ..-.+|+|.+.-..-|+
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~va~kIlp~l~pl~vd~ 498 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--EVANKILPSLVPLTVDP 498 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--hhhhhccccccccccCc
Confidence 55588888888888877665443333332 3333466676677877777777666655432 34567888888888899
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 000201 987 NESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~ 1005 (1866)
+..||..+..++..+....
T Consensus 499 e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 499 EKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ccchhhHHHHHHHHHHhhh
Confidence 9999999999888877654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.24 Score=62.10 Aligned_cols=291 Identities=13% Similarity=0.098 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 1557 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~ 1557 (1866)
++...|..|+..|..+.+.. .......+..++.+..|. +..||..|+..|..+++.-+ .+++.+..++.+
T Consensus 34 g~~k~K~Laaq~I~kffk~F-----P~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF-----PDLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 57888999999999888765 223345566678888774 78999999999998887543 488999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc---cCChhHHHHHHHHHHHHHHhcCcccc---HHHHHHHHH
Q 000201 1558 CLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVYS 1631 (1866)
Q Consensus 1558 ~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~---~~~~~vr~~~l~aL~~vi~~~~~~l~---~~~~~~i~~ 1631 (1866)
+|+..+......+-.+|-.+...+|. ..+..++..+. ..+..+|+.+++.|+.-+...+..+. ++.-.-|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 99988888888999999888765442 34455555554 46788999999999888877766543 345566666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh---hcChhHHHHHHHHHHhcc------CCCCcchhhhHHHHHHHHHhhCCCccc
Q 000201 1632 VLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAIS 1702 (1866)
Q Consensus 1632 ~L~~~l~~~~~~vr~~aa~~l~~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~r~~~~~~L~~~l~~~p~~~~ 1702 (1866)
.+...+.+-..+--.....+|..+-. ..+......+++.+..+. ...+...-...+.++...+..+....-
T Consensus 182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~ 261 (556)
T PF05918_consen 182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS 261 (556)
T ss_dssp HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence 77777766444333444566666544 223333444444443322 111111111123344444444333332
Q ss_pred CCcchHHHHHHHHh----hhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCC------CHHHHHH
Q 000201 1703 MSPLFLSILDRLKS----SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD------SSEVRRR 1772 (1866)
Q Consensus 1703 ~~~~~~~~~~~l~~----~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~~vR~~ 1772 (1866)
...++.+++. .+.+=....+---...++.+..+++..+ ....+..++..+...+... ....-.+
T Consensus 262 ----Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEc 335 (556)
T PF05918_consen 262 ----SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVEC 335 (556)
T ss_dssp -----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHHH
T ss_pred ----hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhhH
Confidence 2344444443 3333333445556677777777765432 2233444445554433222 2245577
Q ss_pred HHHHHHHHHhhCcc
Q 000201 1773 ALSALKSVAKANPS 1786 (1866)
Q Consensus 1773 a~~~l~~~a~~~~~ 1786 (1866)
.++++..+++..|+
T Consensus 336 LL~afh~La~k~p~ 349 (556)
T PF05918_consen 336 LLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHTT-TH
T ss_pred HHHHHHHHhhhCcc
Confidence 88999999998886
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.028 Score=67.02 Aligned_cols=228 Identities=16% Similarity=0.177 Sum_probs=140.0
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhc
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 614 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~ 614 (1866)
-..+++.+-+.+...+.-.-+++.-.+. ++ ..+....+.++.++.---+.....+.|+-+.+++.+.-+. ...
T Consensus 444 n~eiye~lKe~l~nD~a~~geAa~~gMG-l~-mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~--- 516 (926)
T COG5116 444 NREIYEKLKELLKNDRALLGEAAVYGMG-LL-MLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEM--- 516 (926)
T ss_pred cHHHHHHHHHHHhcchhhhhhhhhhccc-ee-eecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHH---
Confidence 3567888877777665222222211111 11 1123345666666644333333457777777777766543 221
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 694 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~ 694 (1866)
.-..+.+...+ +++.-|-+.+++++.---+.|. ...+..+++. ...|.+++||++|..|++-++-.- .
T Consensus 517 -add~I~ell~d-~ds~lRy~G~fs~alAy~GTgn--~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 -ADDYINELLYD-KDSILRYNGVFSLALAYVGTGN--LGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred -HHHHHHHHhcC-chHHhhhccHHHHHHHHhcCCc--chhHhhhhee---ecccCchHHHHHHHHheeeeEecC-----c
Confidence 12234444444 5667888887766555444443 2223333332 378999999999999998764321 2
Q ss_pred hHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---ch
Q 000201 695 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 770 (1866)
Q Consensus 695 ~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~ 770 (1866)
..++..++.|. +-++.+|.+.+-+||-.+.+.+.+... ..+-.+..|++.-||..|+.+++-+..... +|
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~------diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT------DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH------HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 35556666664 468999999999999888877665432 334557789999999999999998775443 35
Q ss_pred hHHhHHHHHHHhhCCCC
Q 000201 771 EIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 771 ~i~~lv~~L~~~l~d~~ 787 (1866)
.+..+...+.+.+.|..
T Consensus 659 ~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 659 NVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 56667776766666543
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=58.15 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=141.0
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHhhccch-hh-hhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC--Ccchhhhh
Q 000201 1354 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LV-DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV--PKEVQPSY 1429 (1866)
Q Consensus 1354 L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~-~~-~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~--~~~~l~~l 1429 (1866)
|-..+.++++.+|..+..+++.+....+.+ +. ..+.-++......++ |......+..++..+++.. +.+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 344566777888888888888776655433 22 223444444444553 3334444577777776321 12222222
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000201 1430 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 1509 (1866)
Q Consensus 1430 ~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i 1509 (1866)
+..+.+ ... ..+-....|..+...+..+.... ...++..-..+
T Consensus 82 ~~~l~~---~~~---------------------------------~q~~~q~~R~~~~~ll~~l~~~~-~~~l~~~~~~f 124 (262)
T PF14500_consen 82 LRSLFQ---NVD---------------------------------VQSLPQSTRYAVYQLLDSLLENH-REALQSMGDDF 124 (262)
T ss_pred HHHHHH---hCC---------------------------------hhhhhHHHHHHHHHHHHHHHHHh-HHHHHhchhHH
Confidence 211111 100 00112345777777777777654 33444333444
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh--------cCCC----HHHHHHHHHHHHHH
Q 000201 1510 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDST----RTVRSSAALALGKL 1577 (1866)
Q Consensus 1510 ~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l--------~d~~----~~vR~~Aa~aLg~L 1577 (1866)
+..++..+.+.-++.--..++..+..++...+. .++..++...+.-.+ +|+. ++++..-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 445555555433666666777777777777663 566666666655443 2332 345555555543
Q ss_pred HhccCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHh
Q 000201 1578 SALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 1636 (1866)
Q Consensus 1578 ~~~~~~~~-~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~ 1636 (1866)
.++.+. ..+|.|++.+.++.+.++..+++.|..++...|..-..++...||+.+...
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 334443 458889999998888999999999999999998875569999999988654
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.5 Score=54.67 Aligned_cols=402 Identities=13% Similarity=0.052 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhCcCchhcHH-hHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHh------hHHhHHHHHHhhcC-
Q 000201 635 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 705 (1866)
Q Consensus 635 ~al~al~~L~~~l~~~~~p~v~-~llp~ll~~~~D~~-~~VR~~a~~al~~i~~~l~~~------~v~~llp~L~~~L~- 705 (1866)
+...+++.++.+....+...+. ..+|.++.++.+++ ..+++.+..+++.+.+.-+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4455567776665555555544 46888999999998 999999999999998754221 22556665555444
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hH----------H
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI----------A 773 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i----------~ 773 (1866)
+.....+..+. +.+.+.+.+..-.-... .+...+--++.-.+..+|.+|..++.+-...+.|+ .. .
T Consensus 152 ~lk~~~~l~~~--~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~ 229 (678)
T KOG1293|consen 152 ELKYISRLDVS--RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK 229 (678)
T ss_pred hhhhhhhhhhh--hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence 22222222211 11111111111111112 23333333444447889999999998544444432 11 1
Q ss_pred hHHH--HHHHhhCCCChhHH-HHHHHHHh-ccccccCCcchhh----------hHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 774 SLVP--TLLMGLTDPNDHTK-YSLDILLQ-TTFVNTVDAPSLA----------LLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 774 ~lv~--~L~~~l~d~~~~vr-~al~~L~~-~~~~~~~~~~~l~----------~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
.+.+ .+.+...+|....+ .++..+.. ....+..+...+. .+.-..+..+.++.+..-..++.+..-
T Consensus 230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~ 309 (678)
T KOG1293|consen 230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI 309 (678)
T ss_pred ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence 2333 33445566655444 23333322 1111111111110 001111122233333322333333333
Q ss_pred HhhhcCCCcchhhh----HhhhhHHHHHH--hcCCCHhHHHHHHHHHH---HHHhhcCCC---Chh-h-HHHHHHHhccc
Q 000201 840 MCSLVTEPKDMIPY----IGLLLPEVKKV--LVDPIPEVRSVAARAIG---SLIRGMGEE---NFP-D-LVSWLLDALKS 905 (1866)
Q Consensus 840 l~~~l~~~~~l~~~----~~~ll~~L~~~--l~d~~~~vR~~a~~aL~---~l~~~~g~~---~~~-~-l~~~L~~~L~~ 905 (1866)
.+....+. ....| .+.+...+... +....++.|..++.-.- .++...+.. ++. . ....++. +.-
T Consensus 310 ~a~~~skl-q~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~-~~~ 387 (678)
T KOG1293|consen 310 LARFASKL-QLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMC-LPP 387 (678)
T ss_pred HHHHHHhh-hhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcc-ccc
Confidence 33211110 00011 11111111111 12334444443322111 111111111 111 1 1111111 111
Q ss_pred CCCHHHHHHHHHHHHHHHHH---hChh-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHH
Q 000201 906 DNSNVERSGAAQGLSEVLAA---LGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAIL 980 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~l~~~---~g~~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll 980 (1866)
..+...+.+++.++-.+.+. +... .-..++..+++.+.+++..+...++.++..+..-++.-=..|+ ...+..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 22334666777776544443 2222 1134556667777888888999889999998888875333344 34778889
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhch-----HHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~l-----lp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
+.+.+++.++|..+.++++.++-+...+-...+ ..-+.....|++|.|...+.+++..+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654333211111 122334557999999999999998875
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.026 Score=64.46 Aligned_cols=189 Identities=19% Similarity=0.191 Sum_probs=122.4
Q ss_pred HHHHHhhcCC-CChhhHHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hHH
Q 000201 697 LPSLLKGLED-KAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIA 773 (1866)
Q Consensus 697 lp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~ 773 (1866)
+..++..|+. +++.++..++.+++..+.... ..+... -..++.+..+++++++.||..|.++|..++....+. .++
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 4455556653 467777777777777654322 223233 267788999999999999999999999998766554 456
Q ss_pred hHHHHHHHhhC-CC-ChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 774 SLVPTLLMGLT-DP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 774 ~lv~~L~~~l~-d~-~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
..++.+++.+. ++ +..++ .++..|...+..... ...+...+|.+.+.+...+..+|..+..++.+++. .+...
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~~~ 168 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPDMT 168 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHHHH
Confidence 77777776433 33 33444 678888775433222 33456678888888888899999999999999986 22111
Q ss_pred hh-hHhhhhHHHHHHhcCC-CHhHHHHHHHHHHHHHhhcCCC
Q 000201 851 IP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 851 ~~-~~~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.. ...+.++.+..+++.. ..++...+...+..+.+.+..+
T Consensus 169 ~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11 1223455666666543 4555556666666666655443
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.79 E-value=4.6 Score=56.00 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=109.3
Q ss_pred chhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCC
Q 000201 1343 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422 (1866)
Q Consensus 1343 ~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~ 1422 (1866)
..+-+..++|.|...+..++..+|..|...+|.++......+.+.++.++...+.-+.|.+.+||-.+.......+.+.+
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence 34557788999999999999999999999999999876666667788999999999999999999999988888777654
Q ss_pred cchhhh-hHHHHHHHHhhhhhhhhhhhcCCc---cccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhc-
Q 000201 1423 KEVQPS-YIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT- 1497 (1866)
Q Consensus 1423 ~~~l~~-l~~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~- 1497 (1866)
.-.-.. ....++.. ..|...+...+.. ..+..|.+ .....++....+-+.+..+.+|.+|+..+..+-+..
T Consensus 333 ~~~~~~~~~~~l~~~---~~D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~ 408 (1266)
T KOG1525|consen 333 SIAKASTILLALRER---DLDEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVY 408 (1266)
T ss_pred hhhhHHHHHHHHHhh---cCChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 321110 11111111 1111111111211 11111111 111225555567777888999999999999988741
Q ss_pred -----ChhhhhhhhhhhhHHHHHHhcC
Q 000201 1498 -----SEQSLKEFVIPITGPLIRIIGD 1519 (1866)
Q Consensus 1498 -----~~~~l~~~v~~i~~~Li~~l~~ 1519 (1866)
++....+-+..|...|++.+-.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhh
Confidence 1122333344444555555543
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=4.3 Score=52.48 Aligned_cols=266 Identities=17% Similarity=0.224 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCC-----hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 746 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~-----w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~ 746 (1866)
.-|....+++..+.+.++..-...+...+-+.+.+.+ |..-...+-.+..++...+.....- +|.+++.+-
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~a 514 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSA 514 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhcc
Confidence 4566666776666666664444566666666665544 8888888888888888766554443 444444332
Q ss_pred -----CCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHH
Q 000201 747 -----DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 819 (1866)
Q Consensus 747 -----D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~ 819 (1866)
-.++..-..+...++.++.++.+. ++...+|.|.+.+..+
T Consensus 515 sik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--------------------------------- 561 (982)
T KOG2022|consen 515 SIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--------------------------------- 561 (982)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc---------------------------------
Confidence 235666667777777777666542 2344444444443322
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhhcCCC----Chh
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFP 893 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~~g~~----~~~ 893 (1866)
+.-..+...+..+|+ +.+.++.||.+.++..+...+.. -.+..|....+++|-+.....++ |..
T Consensus 562 --------k~s~q~i~tl~tlC~--~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~ 631 (982)
T KOG2022|consen 562 --------KESEQAISTLKTLCE--TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLM 631 (982)
T ss_pred --------hHHHHHHHHHHHHHH--hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHH
Confidence 222233334667777 45678999999999999988874 34678899999999999988743 455
Q ss_pred hHHHHHHHhccc----C-CCHHHHH-HHH--HHHHHHHHHhChh-----------------------HHHHHHHHHHHHh
Q 000201 894 DLVSWLLDALKS----D-NSNVERS-GAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNC 942 (1866)
Q Consensus 894 ~l~~~L~~~L~~----~-~~~~~R~-~a~--~~L~~l~~~~g~~-----------------------~l~~ll~~l~~~l 942 (1866)
.++..+++.+.. + +....+. .++ .+++.+...+-.+ .+.+++|.+-+.+
T Consensus 632 ~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~ 711 (982)
T KOG2022|consen 632 KLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVL 711 (982)
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 555555555432 1 1122222 222 2234444433110 1233444443332
Q ss_pred c--cCChhHHhHHHHHHHHhhhhhchhh-HhHHHHHHHHHHhhcc
Q 000201 943 S--HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 984 (1866)
Q Consensus 943 ~--~~~~~vR~~al~~l~~L~~~~g~~f-~~~l~~il~~ll~~l~ 984 (1866)
. ..+..+-++++..++.=....+..| .|+++.+.+.+.....
T Consensus 712 s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 712 SMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 2 2345566666666555455666678 8999999999988544
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.5 Score=56.10 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHH
Q 000201 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~ 925 (1866)
+.+...++..++.+..-+.+++..||...+..+..+-..+... .+.-=+..|++..++.+ +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4566777778888888889999999999999999998887753 22212445666666655 445666555555444445
Q ss_pred hChhHHHHHHHHHHHHhcc
Q 000201 926 LGTVYFEHILPDIIRNCSH 944 (1866)
Q Consensus 926 ~g~~~l~~ll~~l~~~l~~ 944 (1866)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 5555556788888888763
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.38 Score=57.34 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCCCC--chHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHhccCChhHHHHH
Q 000201 1531 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSDAGIREAI 1606 (1866)
Q Consensus 1531 ~~L~~L~~~~~~~~~~--~lp~L~~~l~-~~l~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~L~~~l~~~~~~vr~~~ 1606 (1866)
.....+++.....+.+ .+..++..++ .++..++..+|..|.+|||...-+... ...+++.+...++..+..++..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555555444444 3346665554 788899999999999999998665543 45677778888876689999999
Q ss_pred HHHHHHHHHhcCccccHH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000201 1607 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 1658 (1866)
Q Consensus 1607 l~aL~~vi~~~~~~l~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~ 1658 (1866)
++++..++...|....+. ....+...+...+.+.+++++..+++.+.+|...
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999998888653322 2357888888888888999999999999997643
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=61.05 Aligned_cols=155 Identities=20% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCc
Q 000201 1627 IRVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSP 1705 (1866)
Q Consensus 1627 ~~i~-~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~ 1705 (1866)
..++ .++...+.+++..+|+.+.+|+|-.+.... +...+.+..+.......+...+..++.++..++..++...+...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3444 344567888899999999999999887655 34445555444444334555666677777777666665554332
Q ss_pred c-------hHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcC-CCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000201 1706 L-------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1706 ~-------~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l 1777 (1866)
. ...+...+...+.++++.+|..|++++.+++.++.-.+ + ..+..++-..-..-..++...|+.--+-+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~---~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPP---KVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 2 36788899999999999999999999999998765332 1 22222222222222233445555555555
Q ss_pred HHHHhhCc
Q 000201 1778 KSVAKANP 1785 (1866)
Q Consensus 1778 ~~~a~~~~ 1785 (1866)
...+..++
T Consensus 181 p~y~~s~~ 188 (298)
T PF12719_consen 181 PVYASSSP 188 (298)
T ss_pred HHHHcCCH
Confidence 55555443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.18 Score=55.56 Aligned_cols=231 Identities=17% Similarity=0.199 Sum_probs=131.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCC--CCccchhhHHHHHHHHHHhhchhhHHhhHh
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1201 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vr~~a~~~L~~li~~~~~~~l~~~l~ 1201 (1866)
+..+.+.+.+.+...+.....+||++.. ...+|.+...+.+ ..+-+|+.+..+|+.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------P 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------h
Confidence 3444444444444455555556655432 3445555555544 467789999988887631 3
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCch--hHHHHHHHHHhhccccccchhhhh
Q 000201 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILP 1279 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~al~~l~~il~~~~~~ilp~Lip 1279 (1866)
.+.+.+.+...|+-..|++....|+..+-...+........|. .. .++... ...+..++..+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~--~S-vdPa~p~~~ssv~~lr~~l------------- 163 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY--IS-VDPAPPANLSSVHELRAEL------------- 163 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc--cc-CCCCCccccccHHHHHHHH-------------
Confidence 4455666666788888888776777666432211100000000 00 000000 00111111111
Q ss_pred hhhcCCccchhHHHHHHHHHHhCCCchhh----------HhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHH
Q 000201 1280 KLVHLPLSAFNAHALGALAEVAGPGLNFH----------LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 1349 (1866)
Q Consensus 1280 ~L~~~~~~~~~~~al~~La~~~g~~l~~~----------l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 1349 (1866)
.......+.+| -...+..+.+.+.+++.-.|..+.-++|.+-. +..++.
T Consensus 164 ------------------ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~ 222 (289)
T KOG0567|consen 164 ------------------LDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS---PAAIPS 222 (289)
T ss_pred ------------------HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc---hhhhHH
Confidence 00001111111 14557778888888888888888888887754 222333
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
+...|.+. .+++-+|.-|+.+||.+.. ++.+..|...++|+++-|++.+.-+|...-...
T Consensus 223 L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 223 LIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 33333332 3468899999999999874 467888888999999999999888887665433
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.087 Score=63.04 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=157.3
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhh
Q 000201 433 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 512 (1866)
Q Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~ 512 (1866)
++.-+|+-+-..+..+..+-+.+++. ..+|....+..--+-.|.-.+.-+ .. -.++...+..++-. +. ..
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~Mg-Sa-n~eiye~lKe~l~n-D~-----a~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMG-SA-NREIYEKLKELLKN-DR-----AL 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhcc-cc-cHHHHHHHHHHHhc-ch-----hh
Confidence 35556666655566555443433331 223333333332222333333322 11 13455555555433 11 23
Q ss_pred HHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcC-CCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhH
Q 000201 513 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 591 (1866)
Q Consensus 513 vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~-~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~ 591 (1866)
.-++++.-+|-++- .... ...+..|...-. +..+.+.+...-.+.-+++.. .+..+.++..|..++++-.
T Consensus 462 ~geAa~~gMGl~mL--gt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr----qe~add~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLML--GTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYGR----QEMADDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceeee--cCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh----HHHHHHHHHHHhcCchHHh
Confidence 44455555544431 1111 123333333222 222334444333344344443 3344456667777888888
Q ss_pred HHHHHHHHHHHHhhhCcchhhhcchHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC-CC
Q 000201 592 RRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ 669 (1866)
Q Consensus 592 R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~-i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~-D~ 669 (1866)
|-+.+..++.--.+.|. ..++..+... +.+. +..+|.+|+.|+|-+|-.-. ..++...+.+. ..
T Consensus 533 Ry~G~fs~alAy~GTgn-----~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~sh 598 (926)
T COG5116 533 RYNGVFSLALAYVGTGN-----LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESH 598 (926)
T ss_pred hhccHHHHHHHHhcCCc-----chhHhhhheeecccC-chHHHHHHHHheeeeEecCc--------chhhHHHHHhhhcc
Confidence 88888777765555442 2345555555 4444 45678888888776663221 23333344444 45
Q ss_pred CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCC
Q 000201 670 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 749 (1866)
Q Consensus 670 ~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~ 749 (1866)
+..||-..+-+++..+...+. +..+..|-..+.|.+--+|++|+-+++-+.-.+.+++.+....|...+.++..|.|
T Consensus 599 N~hVR~g~AvaLGiacag~G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 599 NFHVRAGVAVALGIACAGTGD---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred chhhhhhhHHHhhhhhcCCcc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 899999999888877664443 33334344445678889999999999998888888888888899999999998877
Q ss_pred hH
Q 000201 750 PK 751 (1866)
Q Consensus 750 ~~ 751 (1866)
.+
T Consensus 676 e~ 677 (926)
T COG5116 676 ES 677 (926)
T ss_pred Hh
Confidence 43
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.2 Score=57.18 Aligned_cols=209 Identities=15% Similarity=0.167 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHH-hhCCCC
Q 000201 710 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLM-GLTDPN 787 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~-~l~d~~ 787 (1866)
+.|.+.+.+|...+.. + ...++.++-.-.|++.+|...|...|+++...+.++.+ +.++..+.. .+ ++.
T Consensus 219 ~~K~~il~fL~sg~f~--d------~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~-~~~ 289 (501)
T PF13001_consen 219 ERKLAILKFLASGFFP--D------EERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGI-PPE 289 (501)
T ss_pred HHHHHHHHHHHhcCCC--c------HhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-chh
Confidence 3566666666544431 1 13344445556788899999999999988876665533 344443331 00 110
Q ss_pred hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC
Q 000201 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 867 (1866)
Q Consensus 788 ~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d 867 (1866)
.. ..--++.+|.+ ++.-+++.... ....+.++..+...+.+
T Consensus 290 ~~--------------------------------~~pa~~~lq~k---IL~~L~kS~~A----a~~~~~~~~i~~~~l~~ 330 (501)
T PF13001_consen 290 NG--------------------------------RPPASPRLQEK---ILSLLSKSVIA----ATSFPNILQIVFDGLYS 330 (501)
T ss_pred cC--------------------------------CCCCCHHHHHH---HHHHHHHhHHH----HhCCccHHHHHhccccC
Confidence 00 00012334433 44444432111 12335566667777776
Q ss_pred C--CHhHHHHHHHHH---HHHHhhcCCCChhhHHHHHHHhcc-----------cCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000201 868 P--IPEVRSVAARAI---GSLIRGMGEENFPDLVSWLLDALK-----------SDNSNVERSGAAQGLSEVLAALGTVYF 931 (1866)
Q Consensus 868 ~--~~~vR~~a~~aL---~~l~~~~g~~~~~~l~~~L~~~L~-----------~~~~~~~R~~a~~~L~~l~~~~g~~~l 931 (1866)
. ...+|..+...+ .......++.....+-+.++..+- +..+...|..+.++||.+++....-..
T Consensus 331 ~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~ 410 (501)
T PF13001_consen 331 DNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS 410 (501)
T ss_pred CccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc
Confidence 6 667777777777 666666666555555555544321 123456888999999999987654322
Q ss_pred --HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 932 --EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 932 --~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
-.++..+++.+.++.+++|.+.-.+++.+..++..
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 24566777777778899998888888888877654
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0041 Score=45.30 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
++|.+.++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.6 Score=47.65 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=76.6
Q ss_pred CHHHHHH---HHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh-hHHh----hhcchhHH
Q 000201 670 VVAVREA---AECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQ----CLPKIVPK 740 (1866)
Q Consensus 670 ~~~VR~~---a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~-~~~~----~l~~iv~~ 740 (1866)
+.+-|+. +..++.++++...+-.+ +.++|.+-.+|..++-.+|.-+|..++.+.+.+.. .++. .-..|+|.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 4455555 67788888887666554 88999999999999999999999999999987652 2222 12478888
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHh
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
++.+...++.+|.++|.+++++++.
T Consensus 133 ildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999874
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.32 E-value=4.9 Score=50.59 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=127.5
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh---cHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL---SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l---~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
.++..++..++.....++..||..+...+..++... +..-+..+...+...+.|..+.+|..|+.+|..+-....+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 467788888999999999999999999999988733 22334778888888999999999999999998776421111
Q ss_pred HHhhhcchhHHHhhh-ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCC
Q 000201 730 LSQCLPKIVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVD 807 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~ 807 (1866)
. .+++..+..+ -+|++++||.+|..++..= + .-.|.++.-..|-+...|. ++..+.. -+ ...
T Consensus 161 ---e-~~v~n~l~~liqnDpS~EVRRaaLsnI~vd-----n----sTlp~IveRarDV~~anRrlvY~r~lp--ki-d~r 224 (892)
T KOG2025|consen 161 ---E-CPVVNLLKDLIQNDPSDEVRRAALSNISVD-----N----STLPCIVERARDVSGANRRLVYERCLP--KI-DLR 224 (892)
T ss_pred ---c-ccHHHHHHHHHhcCCcHHHHHHHHHhhccC-----c----ccchhHHHHhhhhhHHHHHHHHHHhhh--hh-hhh
Confidence 0 1344444443 3699999999998766421 1 1123334444444443342 2222221 00 011
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
.-+.+.-+-.+..+++|++..+|.++.+.+..=.-...+ ..++..|..+=.+.+.+|+..+..++-.
T Consensus 225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123445566778899999999999887766441111111 1245555444445556777666666655
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.19 Score=67.13 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=96.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-----
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----- 691 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~----- 691 (1866)
+.++.+.+.+++-. ..+ |...+..+.......-..++..+.+.+.......++.++.+|.-+++.++......
T Consensus 397 v~~i~~~I~~~~~~-~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S--HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCC-HHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 34555666553321 122 33434444443322223334434333322222356789999988888877644322
Q ss_pred -------h-HHhHHHHHHh----hcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC---ChHHHHHH
Q 000201 692 -------G-VKLVLPSLLK----GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAG 756 (1866)
Q Consensus 692 -------~-v~~llp~L~~----~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~---~~~VR~aA 756 (1866)
. .+.+++.+.. .....+-..+..++.+||++.. +.+++.+...+.+. ...+|.+|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~A 544 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAA 544 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHH
Confidence 1 1334444444 4445667888999999998864 35566666666655 68899999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCCh--hHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 832 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~--~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~ 832 (1866)
++||..++....+ .+.+.++....|+.+ .+| .|+..|..+ .|....+..+....-.+++..|+..
T Consensus 545 i~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 545 IQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhCchHHHHHH
Confidence 9999988654432 333444444444443 467 566666542 2333333333333334555555544
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=6.1 Score=50.42 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCch----hHHHHHHHHHhhccccccchhhhhhhhcCCccchh
Q 000201 1215 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS----DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 1290 (1866)
Q Consensus 1215 ~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~----~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~ 1290 (1866)
-.+-|..|+.++..+.+.+.......-+++++..|..+-.+ ..+|+.+.-++.... .|. ..+.+. .
T Consensus 36 L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---~~~----v~dds~---q 105 (970)
T KOG0946|consen 36 LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---SPE----VMDDST---Q 105 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---chh----hcccch---h
Confidence 35567888888888876654444444467777777554333 355666555543321 111 111110 0
Q ss_pred HHHHH-HHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc------HHHHHHHHHhccCCCch
Q 000201 1291 AHALG-ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQA 1363 (1866)
Q Consensus 1291 ~~al~-~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~------~~~ll~~L~~~l~~~~~ 1363 (1866)
..-+| .+++.+ .. -+..+..++.++...+-.||..++..+..++..-+.+. .+.-+..++..+.|...
T Consensus 106 sdd~g~~iae~f----ik-~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 106 SDDLGLWIAEQF----IK-NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred hhHHHHHHHHHH----Hc-CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 01111 122211 11 14456667777877888899999988888887655422 34445667777788778
Q ss_pred hHHHHHHHHHHHHHhhccch-hhhhHHHHHHHHHHHhCCC---C-hhHHHHHHHHHHHHHhcCC
Q 000201 1364 SIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSDS---D-STTVAAAWEALSRVVASVP 1422 (1866)
Q Consensus 1364 ~vR~~a~~~l~~l~~~~~~~-~~~~~~~il~~L~~ll~d~---~-~~v~~~A~~aL~~l~~~~~ 1422 (1866)
.+|..++..+..+.+..+.. -.-.+.++...|+.++... | .-|..-+...|..+++...
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 89999999999998754422 1123467777888877632 2 2567778888888887543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.5 Score=55.15 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=81.6
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 898 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 898 ~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
.++...+. +...+.-+++.+......+.. .-+.-+..+++.+.+.+..+|..++..+..+|..-+. |+..+..
T Consensus 27 ~il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaD 99 (556)
T PF05918_consen 27 EILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVAD 99 (556)
T ss_dssp HHHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHH
T ss_pred HHHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHH
Confidence 34444443 244666777777776665543 2345567778888999999998877777777665544 7888888
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 978 ~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
.|.+.|..+++.....+-.++..++..-+...+..+...+... ...+..+|..++..+..-+..+
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 8899888777776777777777777655544444444444421 1234567887887776655443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.15 E-value=5.9 Score=49.93 Aligned_cols=225 Identities=20% Similarity=0.146 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhhcH-----hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC
Q 000201 674 REAAECAARAMMSQLSA-----QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 748 (1866)
Q Consensus 674 R~~a~~al~~i~~~l~~-----~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~ 748 (1866)
-+....-+..++..++. +-+..++..++.+.++++-.+|+-.+++|..+..+....-...++.+...+..-+.|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 34445555556555543 2347788888999999999999999999999888543333334567778888899999
Q ss_pred ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHHHH-HHHHHhccccccCCcchhhhHHHHHHHhhcCCC
Q 000201 749 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 826 (1866)
Q Consensus 749 ~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~ 826 (1866)
.|.||-.|+.||..+-..-.+++. +++..+...+ +||++.||.+ +..+.. -+...|.+.....|-+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v-----------dnsTlp~IveRarDV~ 206 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISV-----------DNSTLPCIVERARDVS 206 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc-----------CcccchhHHHHhhhhh
Confidence 999999999999998754444433 3344444444 4899999854 443321 1234677888778877
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH-HHhhcCCCChhhHHHHHHHhccc
Q 000201 827 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LIRGMGEENFPDLVSWLLDALKS 905 (1866)
Q Consensus 827 ~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~-l~~~~g~~~~~~l~~~L~~~L~~ 905 (1866)
...|+.+-+- +...+ +- -.--.+.-+..+...+.|....|+.++..+|.. ..+.. + .=++.+++.+.-
T Consensus 207 ~anRrlvY~r---~lpki-d~--r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d----gni~ElL~~ldv 275 (892)
T KOG2025|consen 207 GANRRLVYER---CLPKI-DL--RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D----GNILELLERLDV 275 (892)
T ss_pred HHHHHHHHHH---hhhhh-hh--hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c----ccHHHHHHHhcc
Confidence 7777764332 22211 10 001123456677788999999999988887755 22211 1 123334455554
Q ss_pred CCCHHHHHHHHHHHHH
Q 000201 906 DNSNVERSGAAQGLSE 921 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~ 921 (1866)
..+..++..++.++-.
T Consensus 276 snss~vavk~lealf~ 291 (892)
T KOG2025|consen 276 SNSSEVAVKALEALFS 291 (892)
T ss_pred ccchHHHHHHHHHHHH
Confidence 4444567777766533
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.1 Score=55.92 Aligned_cols=297 Identities=16% Similarity=0.254 Sum_probs=139.6
Q ss_pred cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhc----ccCCCHHHHHHHHHHHH
Q 000201 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL----KSDNSNVERSGAAQGLS 920 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L----~~~~~~~~R~~a~~~L~ 920 (1866)
.++.|+...++..|...+..+...--+-.++|+-.+....+++ +...+++.|...+ ++..++.--...+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5778899999999999886533222234566666666655554 2334444444433 45555545556777888
Q ss_pred HHHHHhChh------HH-HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHH
Q 000201 921 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 993 (1866)
Q Consensus 921 ~l~~~~g~~------~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~ 993 (1866)
.+++..... .+ +.++|.+...++ .--.+|.||.=+++..++..-. ...+
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq-------------------~dV~EF~PYvfQIla~Lle~~~--~~~~--- 153 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQ-------------------QDVQEFIPYVFQILAQLLELRP--SSPL--- 153 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHH-------------------TT-TTTHHHHHHHHHHHHHHSS----S----
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHcCC--CCCC---
Confidence 777754432 11 223333333222 2223566666666555555432 0111
Q ss_pred HHHHHHHHHHhhcccchhchHHhHhcccCCCchHHH---HHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHH
Q 000201 994 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR---QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1070 (1866)
Q Consensus 994 a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR---~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l 1070 (1866)
+ +....++|.+... .-|.-| -+.+.++..++.+.+.... . ...+
T Consensus 154 ------------p-~~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i~----~-------------~~~l 200 (435)
T PF03378_consen 154 ------------P-DAYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFIV----A-------------NNQL 200 (435)
T ss_dssp --------------TTTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-C
T ss_pred ------------c-HHHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhhc----c-------------hhhH
Confidence 1 1122233443322 234321 2334455555544321100 0 0011
Q ss_pred HHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 000201 1071 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE 1148 (1866)
Q Consensus 1071 ~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~ 1148 (1866)
...+| ++..|...... -..+..++..++.+.|. .+.+|++.++..++.++.+ +...-...-...++-
T Consensus 201 ~~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 201 EPILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp HHHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 22222 22233222221 14588899999998886 5789999999999999974 344444444444454
Q ss_pred HHHHhccc--------cccchHHHHhc-----ccCC-CCccchhhHHHHHHHHHHhhch--hhHHhhHhhHHHHHHHhhc
Q 000201 1149 LVRKLGER--------VLPSIIPILSR-----GLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1149 lv~~~~~~--------~l~~llp~L~~-----~L~d-~~~~vr~~a~~~L~~li~~~~~--~~l~~~l~~ll~~l~~~L~ 1212 (1866)
++.+.|+. +.+.+...+.. .++. ..+.-|.-++.++..++..... ......|..++..+.+.+.
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 44444432 12222211111 1111 1223466666777776654321 1112345555555555554
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.063 Score=56.86 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=86.7
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHh---hhhh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYL---PRSL 964 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L---~~~~ 964 (1866)
++.++|.+++.+...+.+ -|--|.+++.+++...|.+ .+..+++.+...+++.++++...++.++..| ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 567888888888865544 6778888888888884444 3456666777888999999999999999999 8889
Q ss_pred chhhHhHHHHHHHHHHhhcc-----------CCChHHHHHHHHHHHHHHHhhccc
Q 000201 965 GVQFQNYLQQVLPAILDGLA-----------DENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 965 g~~f~~~l~~il~~ll~~l~-----------d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
|+.+.||+.+++|.+--..+ ....++++...+++..+-..-+++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999999999998873221 123456666666666665555444
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.19 Score=63.31 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
++..+-.=..+|..++..+....+ ...++|.+.+.+.+.+ ..-..+-.+-.|+++... ..|...++|.|...+.
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s~--~~~~~~~~p~l~pi~~ 359 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVL-FQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLSQ--NEFGPKMLPALKPIYS 359 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHH-HHhhhhHHHHHhcccc---ccccccchhhhhhhccch--hhhhhhhhHHHHHHhc
Confidence 344455555667777776643333 5678888877664432 111123334455555543 5566677887777666
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh-
Q 000201 668 D-QVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV- 744 (1866)
Q Consensus 668 D-~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~- 744 (1866)
- ....++-.-.+=++.|.+.++++.+ ..++|.|...+++.+.+++..++..+..+++...-.... ..|+|.+.++
T Consensus 360 ~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~ 437 (700)
T KOG2137|consen 360 ASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLA 437 (700)
T ss_pred cCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcch
Confidence 3 3334454556666778888888877 889999999999999999999999999999987654433 3678877775
Q ss_pred ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 783 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l 783 (1866)
+..++..|+..++-|++.+.+.+....+-+.+..+.+..
T Consensus 438 ~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 438 FKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI 476 (700)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 456778999999999999987665444434444444444
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.35 Score=59.76 Aligned_cols=151 Identities=25% Similarity=0.366 Sum_probs=114.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc----chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh--
Q 000201 813 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK----DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-- 886 (1866)
Q Consensus 813 ~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~----~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-- 886 (1866)
..-|.+-++++-++.+||..|+..+-++.-. .+++ ++...++.-...+..++.|+.|.||..|...+..+...
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999988774 3433 23344444556688889999999999998887776654
Q ss_pred --cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhh
Q 000201 887 --MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 963 (1866)
Q Consensus 887 --~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~ 963 (1866)
+++....+++..+.+.+..++...+|..++.+|..++..- ....++.++|.+-..+.+....||-++..++..+-..
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3445566788888888877777789999999998876532 2236778888777778888999999888877766544
Q ss_pred h
Q 000201 964 L 964 (1866)
Q Consensus 964 ~ 964 (1866)
-
T Consensus 333 r 333 (1005)
T KOG1949|consen 333 R 333 (1005)
T ss_pred h
Confidence 3
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=16 Score=53.25 Aligned_cols=198 Identities=10% Similarity=0.082 Sum_probs=111.4
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh--hHhhhhHHHHHHhc-CCCHhHHHHHHHHHHHHHh
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~--~~~~ll~~L~~~l~-d~~~~vR~~a~~aL~~l~~ 885 (1866)
+.|..+.+.+.+...+++..++..|.+.+..++..+-+.+++.. +-..++..+...+. ....++|+.+.+|+..++.
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 55666777777765666778888998888887765444444332 23445555555554 4567999999999999988
Q ss_pred hcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-C------hhHHHHHHHHHHHHhccC-ChhHHhHHH
Q 000201 886 GMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-G------TVYFEHILPDIIRNCSHQ-RASVRDGYL 954 (1866)
Q Consensus 886 ~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g------~~~l~~ll~~l~~~l~~~-~~~vR~~al 954 (1866)
..+.. -|..++..+-....+. ....-..+++.+..++..+ + .+.+..++..+.+..... +..+--.++
T Consensus 1213 s~~~nIkSGWktIF~VLs~aa~d~-~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI 1291 (1780)
T PLN03076 1213 SRVNNVKSGWKSMFMVFTTAAYDD-HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAI 1291 (1780)
T ss_pred HHHhhhhcCcHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHH
Confidence 76654 3555555444333332 2334456667666665432 1 234555555555554332 233333344
Q ss_pred HHHHHhhhhhch---------------------------------hhHhHHHHHHHHHHh---hccCCChHHHHHHHHHH
Q 000201 955 TLFKYLPRSLGV---------------------------------QFQNYLQQVLPAILD---GLADENESVRDAALGAG 998 (1866)
Q Consensus 955 ~~l~~L~~~~g~---------------------------------~f~~~l~~il~~ll~---~l~d~~~~VR~~a~~al 998 (1866)
..|..++..+-. .-..+..-++|.+.. ...|+.++||..|+..+
T Consensus 1292 ~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076 1292 AFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 444433222100 000112234444433 34577788888888887
Q ss_pred HHHHHhhcc
Q 000201 999 HVLVEHYAT 1007 (1866)
Q Consensus 999 ~~i~~~~~~ 1007 (1866)
-.++..++.
T Consensus 1372 F~iL~~yG~ 1380 (1780)
T PLN03076 1372 FDTLRNHGH 1380 (1780)
T ss_pred HHHHHHhhc
Confidence 777766544
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.38 Score=58.46 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHH
Q 000201 571 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLCE 645 (1866)
Q Consensus 571 ~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-----~~~~~~~~r~~al~al~~L~~ 645 (1866)
...+++..-++ .++....|++|...+.++++..+..... -++.++...+ ....+|+.+++|+..++.++.
T Consensus 210 dP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 210 DPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp SHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred CHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 34566665332 2333456777777777888765432221 2233444443 356789999999999999996
Q ss_pred HhCc------------CchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 646 KLGR------------LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 646 ~l~~------------~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
.... .+..++ ..++|-|. .-.+..+-+|-.|.+.+..+-..++++.+..++|.+...|.+++.-++
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchh
Confidence 5421 123332 34667665 444567889999999999999999988889999999999999998887
Q ss_pred HHHHHH
Q 000201 713 QSSVQL 718 (1866)
Q Consensus 713 ~~a~~~ 718 (1866)
.-|+.+
T Consensus 364 tyAA~~ 369 (370)
T PF08506_consen 364 TYAAIA 369 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 766554
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.88 E-value=6.6 Score=48.18 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=113.5
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
..+.++-.+++++..++..||..+++++..+...++..++ .....++..+.+.+-|..+.||..|+.+|..+-+.-+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 4455666778888999999999999999999886654222 23456777777788899999999999999998875543
Q ss_pred CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHh-HHHHHHHHhhhhhchhh
Q 000201 890 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 890 ~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~-~al~~l~~L~~~~g~~f 968 (1866)
+ -..+...+...++++.+..+|+.+...+.. . ....|.+++.+.+-+...|. .+-.++..+.....-++
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v-----d----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV-----D----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 133455666777888888899877654421 1 22346666666665544443 23334444433322222
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
.+. +. .+-.++.|.+..|+.++.+++.
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHH
Confidence 222 22 3445677888888887776643
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=8.6 Score=49.21 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=166.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCC--------CHHH-HHHHHHHHHHHHHHhccc------
Q 000201 1092 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--------SSER-RQVAGRALGELVRKLGER------ 1156 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~--------~~~~-R~~A~~~L~~lv~~~~~~------ 1156 (1866)
|....+|-.|-.+...+..+++..+ +|.++..+-+...-. +.-. +.++..+.|--.-.+.+.
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqll---vP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~W 484 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLL---VPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKW 484 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3455678888888877776665543 344444442222211 1112 223333333322222221
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHH--h
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--A 1233 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-~~~vr~~A~~al~~l~~~--~ 1233 (1866)
....++|.+... .+...-.|+.+++.+++.+..--+ .+.-+.+...+...+.|. |.-||-.+++++..+.+. +
T Consensus 485 l~~~llpEl~~~-~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF 560 (978)
T KOG1993|consen 485 LQEALLPELAND-HGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNF 560 (978)
T ss_pred HHHhhCHHhhhc-ccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccC
Confidence 123444544411 112334578888888887653222 223345566677788887 778899999998888664 3
Q ss_pred chhhHhhHHHHHHHhc-------cCCCchhHHHHHHHHHhhccccccchh------hhhhhhcCCccc-----hhHHHHH
Q 000201 1234 GMQAIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLVHLPLSA-----FNAHALG 1295 (1866)
Q Consensus 1234 g~~~~~~ilp~Ll~~L-------~~~~~~~~al~~l~~il~~~~~~ilp~------Lip~L~~~~~~~-----~~~~al~ 1295 (1866)
.++.+.+++|.+...+ ...++.-..+..+..++..-++.+-|+ ++|.+-...... .-..++.
T Consensus 561 ~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 561 SEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 4455555655544332 333444456666666665544444343 345553322211 1133445
Q ss_pred HHHHHhCCCchhhHhhHHHHHHHhcCCC----CHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhccCCCchhHHHHH
Q 000201 1296 ALAEVAGPGLNFHLGTILPALLSAMGDD----DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSS 1369 (1866)
Q Consensus 1296 ~La~~~g~~l~~~l~~il~~L~~~l~~~----~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~l~~~~~~vR~~a 1369 (1866)
.+....|..-....+-++|.+ +...|. +...-+.+.+.+...+.+.. ++.+-.++|.+...+.-..... ..+
T Consensus 641 ~lV~alg~qS~~~~~fL~pVI-el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L-~t~ 718 (978)
T KOG1993|consen 641 NLVNALGAQSFEFYPFLYPVI-ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENL-PTV 718 (978)
T ss_pred HHHHHhccCCccchHHHHHHH-HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhH-HHH
Confidence 555666765444444445533 333332 23456777777877776543 2445566666666554332222 334
Q ss_pred HHHHHHH-HhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Q 000201 1370 AYLIGYF-YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1370 ~~~l~~l-~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+..+... .-..+.-+..|...+.+.+..+++|-..+-..+.+..+..+++.
T Consensus 719 l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t 770 (978)
T KOG1993|consen 719 LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT 770 (978)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 4444433 22344456677778888888888765555445555555555543
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=8.2 Score=48.53 Aligned_cols=440 Identities=15% Similarity=0.105 Sum_probs=219.8
Q ss_pred HHHHHHhCcCchhcHH-hHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhcH--hhH--HhHHHHHHhhcCCCC-hhhH
Q 000201 641 ECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKA-WRTK 712 (1866)
Q Consensus 641 ~~L~~~l~~~~~p~v~-~llp~ll~~~~D~~--~~VR~~a~~al~~i~~~l~~--~~v--~~llp~L~~~L~~~~-w~~r 712 (1866)
..++-+..+..++.+. ..+|.++..+...+ ..+....+..+...+..-.. ..+ ...+|.++..+.+++ ..++
T Consensus 34 kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~l 113 (678)
T KOG1293|consen 34 KNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVL 113 (678)
T ss_pred cchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHH
Confidence 3344444554554443 45677776666544 44443344455554442221 112 457889999999888 8999
Q ss_pred HHHHHHHHHHHhhCh---hhHHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc-------chhHHhHHHHHHH
Q 000201 713 QSSVQLLGAMAYCAP---QQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK-------NPEIASLVPTLLM 781 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~---~~~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~-------~~~i~~lv~~L~~ 781 (1866)
.+.+.++..+.+..+ ..+..+...|++.+.-... ..+...+--+. +...+.... |..+.+-+..+..
T Consensus 114 e~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~--~~a~~s~~~~hq~Il~Na~i~ekI~~l~~ 191 (678)
T KOG1293|consen 114 EKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS--RAAHLSSTKDHQLILCNAGILEKINILLM 191 (678)
T ss_pred HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh--hhccccccchhhheeccccchhhHHHHHH
Confidence 999999999998754 3466677788887776666 21111111111 111111111 1111112222222
Q ss_pred hhCCCChhHH-HHHHHHH---hccccccCC------cchhhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC--
Q 000201 782 GLTDPNDHTK-YSLDILL---QTTFVNTVD------APSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEP-- 847 (1866)
Q Consensus 782 ~l~d~~~~vr-~al~~L~---~~~~~~~~~------~~~l~~l~p--~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-- 847 (1866)
.+ +-.+| .|+..+. ..-+..... .-.-..+.+ .+.+.++++....|..++.++..++..--+.
T Consensus 192 ~~---s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~ 268 (678)
T KOG1293|consen 192 YL---SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDP 268 (678)
T ss_pred hh---hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccc
Confidence 21 11233 2333332 100000000 000112233 4456667777778888888888887632110
Q ss_pred ----cchhhhHhh-h-hHHHHHHhcCCCHhHHHHHHH---HHHHHHhhcCCC-C---hhhHHHHHHHh---cccCCCHHH
Q 000201 848 ----KDMIPYIGL-L-LPEVKKVLVDPIPEVRSVAAR---AIGSLIRGMGEE-N---FPDLVSWLLDA---LKSDNSNVE 911 (1866)
Q Consensus 848 ----~~l~~~~~~-l-l~~L~~~l~d~~~~vR~~a~~---aL~~l~~~~g~~-~---~~~l~~~L~~~---L~~~~~~~~ 911 (1866)
..+.+..+. + .-.....+.+|.+..-..+.. .+..++...... + ..+..+.++.. ++... ...
T Consensus 269 l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~ 347 (678)
T KOG1293|consen 269 LPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKY 347 (678)
T ss_pred cccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhh
Confidence 011111111 1 111223344554332222221 122233333221 1 11222223222 11111 112
Q ss_pred HHHHHHH---HHHHHHHhChhHHHHHHH-----HHHHHhccCChhHHhHHHHHHHHhhhhhc---hhhHhHHHHHHHHHH
Q 000201 912 RSGAAQG---LSEVLAALGTVYFEHILP-----DIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAIL 980 (1866)
Q Consensus 912 R~~a~~~---L~~l~~~~g~~~l~~ll~-----~l~~~l~~~~~~vR~~al~~l~~L~~~~g---~~f~~~l~~il~~ll 980 (1866)
|.-++.. +...+...|...-+++.. .+.......+..++.+++.++..+++... .. +--..+..+++
T Consensus 348 ~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plv 425 (678)
T KOG1293|consen 348 RLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLV 425 (678)
T ss_pred hHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHH
Confidence 3222211 122222333221122221 11111223467778888888877765443 22 23355778888
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccc---h-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1056 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~---i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ 1056 (1866)
+.+.|+.-.|...++.++..++-.|+.-. + .-.+..+.+...++...+|..+++.+..+.+.+-
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d------------ 493 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD------------ 493 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch------------
Confidence 88899998999999999999887775431 1 2255667777888889999999999999876521
Q ss_pred CCCCcchHHHHHHHHHHhchhhhHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcChhh
Q 000201 1057 DDEGASTEAHGRAIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKT 1115 (1866)
Q Consensus 1057 ed~~~~~e~~~~~l~~~lg~~~~~~vl~~-L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~ 1115 (1866)
+.. ..... .++... +....+|+++.|.+.++.++..+.-+..+.
T Consensus 494 --e~~-----k~~~~--------~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 494 --EEE-----KFQLL--------AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHH-----HHHHH--------HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 000 00011 122222 223468999999999999999998765543
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=3.3 Score=59.80 Aligned_cols=296 Identities=13% Similarity=0.108 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHH-hc---cC----Ch-hhHHHHHH
Q 000201 1526 KSAILSTLSIIIRKGGIALKPFLPQLQT----TFIKCLQDSTRTVRSSAALALGKLS-AL---ST----RV-DPLVGDLL 1592 (1866)
Q Consensus 1526 r~~al~~L~~L~~~~~~~~~~~lp~L~~----~l~~~l~d~~~~vR~~Aa~aLg~L~-~~---~~----~~-~~~l~~L~ 1592 (1866)
|...+.-|.++...--..++-..+.++. .|.+.-.+++..++.-|...|.++. .+ .. ++ ..++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 5566666666654322233333345444 4445444556778888888887773 22 11 11 24555555
Q ss_pred HHhc-cCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh----hcC---hhHH
Q 000201 1593 SSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ----CME---DGQL 1664 (1866)
Q Consensus 1593 ~~l~-~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~----~~~---~~~~ 1664 (1866)
..++ +.+.++|+.+++++..++...+.++. .-...|+..+.....++++.+-..+=+.+..++. .++ .+.+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 5454 45689999999999999998887765 4566667666655556655555444444443322 222 2333
Q ss_pred HHHHHHHHhccCCCC-cchhhhHHHHHHHH---HhhCC------------------------Cc---cc----CCcchHH
Q 000201 1665 ADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---IS----MSPLFLS 1709 (1866)
Q Consensus 1665 ~~~l~~ll~~~~~~~-~~~r~~~~~~L~~~---l~~~p------------------------~~---~~----~~~~~~~ 1709 (1866)
...+.-+..-..... ......++..|..+ +...+ .. +. ...+|-.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 333333222111111 11111112222211 10000 00 00 0135777
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhc-CCCChh-----hHHHHHHHHHhhcC--------------CCC---
Q 000201 1710 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTT-----VVVDILASVVSALH--------------DDS--- 1766 (1866)
Q Consensus 1710 ~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~-~~~~~~-----~~~~~l~~l~~~l~--------------~~~--- 1766 (1866)
++..+...+.++++++|..|+..+-..+...+.. +++.|. .+.+++..+-.... +++
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 7777777788999999999999998888766544 333333 23333333221100 001
Q ss_pred -----HHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhh
Q 000201 1767 -----SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAF 1822 (1866)
Q Consensus 1767 -----~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~ 1822 (1866)
.+.-..|+..+..+-.+.-+.+.+.|+.++..+..|+...|..+-+.+-.|+..+.
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 13344455555544445556677889999999999999999999888889988886
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.016 Score=42.20 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAY 724 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~ 724 (1866)
+|.+++.++|++|++|..|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555554443
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.60 E-value=8 Score=47.65 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHhC--cCch-hcHHhHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhhcHhh-----HHhHHHHH
Q 000201 631 KRREGALLAFECLCEKLG--RLFE-PYVIQMLPLLLVAFSDQ--VVAVREAAECAARAMMSQLSAQG-----VKLVLPSL 700 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~--~~~~-p~v~~llp~ll~~~~D~--~~~VR~~a~~al~~i~~~l~~~~-----v~~llp~L 700 (1866)
+.-..|+.+++.+.-... +.+. .....++...+..+.++ +..+.....+++.. +++++.- +..++. .
T Consensus 61 ~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~-~ 137 (372)
T PF12231_consen 61 RLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA-A 137 (372)
T ss_pred HHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH-H
Confidence 334456666666553211 1121 22223555666666554 34555555555543 2333322 232333 2
Q ss_pred HhhcCC--CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-hhHHhHHH
Q 000201 701 LKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVP 777 (1866)
Q Consensus 701 ~~~L~~--~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i~~lv~ 777 (1866)
+..+.+ ++-.+-.+.+.++..+....|..+..+...-+|.++..+-+....+|..|...+..+...++. ..+...+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 233332 445666778889999999999999999888889888888888999999987777666655542 22222222
Q ss_pred HHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC-cchhhhHhh
Q 000201 778 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGL 856 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-~~l~~~~~~ 856 (1866)
...+....+. .....+.+.+.+.+.++ +.-..+.++-+.+...++.. -+--+++..
T Consensus 218 ~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~--~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 218 EDLQRSLENG---------------------KLIQLYCERLKEMIKSK--DEYKLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHhccccccc---------------------cHHHHHHHHHHHHHhCc--CCcchHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222111111 22333444455555442 11223444444444444433 233467888
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.+.....+++++++.+|..|..+...++.....+
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999866544
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=95.53 E-value=12 Score=48.51 Aligned_cols=232 Identities=17% Similarity=0.153 Sum_probs=137.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH--H-hhhcchh-HHHhhhccC-------CChHHHHHHHHHHHHHHh
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--S-QCLPKIV-PKLTEVLTD-------THPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~--~-~~l~~iv-~~l~~~L~D-------~~~~VR~aA~~aL~~l~~ 765 (1866)
+...+..|+..+-..|..++.++..+....+..- . ..+..+= +.+-++|.- +....+..|+.-|..|+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3444555566666667777777777776543210 0 0111111 122233332 234567778888888775
Q ss_pred ---hccchhHHhHHHHHHHhhCCCCh-h-HHHHHHHHHhccccccCCcch--hhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 766 ---VIKNPEIASLVPTLLMGLTDPND-H-TKYSLDILLQTTFVNTVDAPS--LALLVPIVHRGLRERSAETKKKAAQIVG 838 (1866)
Q Consensus 766 ---~i~~~~i~~lv~~L~~~l~d~~~-~-vr~al~~L~~~~~~~~~~~~~--l~~l~p~L~~~l~d~~~~vr~~a~~~l~ 838 (1866)
...++.+...+|.|++.+...+. . +.+|+..|.... .+...... -...+|.+.+.+.+ .+.....|..++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 12245677889999999976655 3 446777776533 11111111 11234555554444 4456777888888
Q ss_pred HHhhhcCCC--cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---------CChhhHHHHHHHhcccCC
Q 000201 839 NMCSLVTEP--KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---------ENFPDLVSWLLDALKSDN 907 (1866)
Q Consensus 839 ~l~~~l~~~--~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---------~~~~~l~~~L~~~L~~~~ 907 (1866)
+++...+.. ..-...+..+++.+...+.......+-.+...|+.+....+. .....+...+...+++.-
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 887754321 111233445667777777666666677778888888776631 134467777777787777
Q ss_pred CHHHHHHHHHHHHHHHHHhChhH
Q 000201 908 SNVERSGAAQGLSEVLAALGTVY 930 (1866)
Q Consensus 908 ~~~~R~~a~~~L~~l~~~~g~~~ 930 (1866)
....|..+....+.+...+|.+.
T Consensus 245 ~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 245 TPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred CHHHHHHHHHHHHHHHHHhChHh
Confidence 77788888888888888888763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=64.91 Aligned_cols=218 Identities=20% Similarity=0.168 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhccCCh------hhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcC
Q 000201 1566 VRSSAALALGKLSALSTRV------DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 1639 (1866)
Q Consensus 1566 vR~~Aa~aLg~L~~~~~~~------~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~ 1639 (1866)
=|.+|...||++..+++-. -.++|-+++.|+++..++|....--...|+.--..--.+-..+.........+.+
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4677888888886665421 1356667777887777787776666655554221100000001011111111111
Q ss_pred ---CCHHHHHHHHHHHHHHHhhcChhHH----HHHHHHHHhccCC-CCcchhhhHHHHHHHHHhhCCCcccCCcchHHHH
Q 000201 1640 ---DDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 1711 (1866)
Q Consensus 1640 ---~~~~vr~~aa~~l~~L~~~~~~~~~----~~~l~~ll~~~~~-~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~ 1711 (1866)
-+++-|.++|.+|..++..++-.+- .+++...+..+++ ..+..|++.+.+|+.+-.+.+..-+. ..-+.-.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence 1357899999999999987765431 1344444555555 36888999999999999887654331 1223345
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhh-------------HHHHH----HHHHhhcCCCCHHHHHHHH
Q 000201 1712 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV-------------VVDIL----ASVVSALHDDSSEVRRRAL 1774 (1866)
Q Consensus 1712 ~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~-------------~~~~l----~~l~~~l~~~~~~vR~~a~ 1774 (1866)
+.+...+.|+-+++|.+|+-|+|.++....+...+.... ....+ -.++..++|.++-||...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 667777888999999999999999998542211100011 11222 2566778899999999988
Q ss_pred HHHHHHHhhC
Q 000201 1775 SALKSVAKAN 1784 (1866)
Q Consensus 1775 ~~l~~~a~~~ 1784 (1866)
.++..++..+
T Consensus 725 v~ls~~~~g~ 734 (1387)
T KOG1517|consen 725 VALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHhh
Confidence 8888777544
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.44 Score=57.92 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHhcc-----c---------
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGE-----R--------- 1156 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l---~~~~~~~R~~A~~~L~~lv~~~~~-----~--------- 1156 (1866)
....|.+|.+.+..++...++...+.+...++.++... .+.++..+..|+..++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 35679999999999998877666665555555554422 245778888999999988765421 0
Q ss_pred --cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q 000201 1157 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1226 (1866)
Q Consensus 1157 --~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al 1226 (1866)
....++|-|. .-.+..|-.|..||..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234455554 2123456678888887776533322 346688999999999999999999888663
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.59 Score=58.11 Aligned_cols=255 Identities=13% Similarity=0.219 Sum_probs=142.9
Q ss_pred CCCCchHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHh----cc-CChhHHHHHHHHHHH
Q 000201 1543 ALKPFLPQLQTTFIKCLQDS----TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSL----QV-SDAGIREAILTALKG 1612 (1866)
Q Consensus 1543 ~~~~~lp~L~~~l~~~l~d~----~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l----~~-~~~~vr~~~l~aL~~ 1612 (1866)
.+.|+..+++..+...+..+ |+-+-+...+.+..+- .+.|....+++.|...+ ++ +++..-.-.++++..
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 46788888888887777543 5555555555555441 22344455555555444 33 357777888899999
Q ss_pred HHHhcCcc---ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh----hHHHHHHHHHHhccCCCCcchh--
Q 000201 1613 VLKHAGKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED----GQLADLLQELLNLASSPSWAAR-- 1683 (1866)
Q Consensus 1613 vi~~~~~~---l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~----~~~~~~l~~ll~~~~~~~~~~r-- 1683 (1866)
+++..... .....-+.+++.+...+..+-.+.---+-++++.+....+. +.+..+++.++. ..-|..+
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~---p~lWe~~gn 175 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS---PALWERRGN 175 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS---GGGGGSTTT
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC---cchhccCCC
Confidence 88875432 12245677777777777666444444445566666655551 235556665553 2233322
Q ss_pred -hhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhc
Q 000201 1684 -HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 1762 (1866)
Q Consensus 1684 -~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l 1762 (1866)
-..+-.|.+.++++|..+...+....+.......+.++..+ ..|..-+..++.+.... ....++.+++..+...+
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~--~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPE--ALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HH--HHGGGHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHH
Confidence 22334667778888888866667788888888888776643 34666666666665432 11247777777777776
Q ss_pred CC-CCHH-HHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhc
Q 000201 1763 HD-DSSE-VRRRALSALKSVAKANPSAIMVHVALFGPALAECLK 1804 (1866)
Q Consensus 1763 ~~-~~~~-vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~ 1804 (1866)
+. +... +|+........+++..|+.+...++.+-|-++..+-
T Consensus 252 q~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il 295 (435)
T PF03378_consen 252 QSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMIL 295 (435)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHH
T ss_pred hhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHH
Confidence 53 3333 444444444455566777777777766665555543
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=54.93 Aligned_cols=136 Identities=24% Similarity=0.326 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCchHHHHH------------HHHHHhcCCCHHHHHHHHHHHHHHHhc-----------
Q 000201 1525 VKSAILSTLSIIIRKGG-IALKPFLPQLQT------------TFIKCLQDSTRTVRSSAALALGKLSAL----------- 1580 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~-~~~~~~lp~L~~------------~l~~~l~d~~~~vR~~Aa~aLg~L~~~----------- 1580 (1866)
+|.+|+.+|..+++..+ ..+..|.+.++| .+--.+.|++..+|..|+.++..+..-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 78999999999998843 223333333322 222346789999999999999988431
Q ss_pred c-C--C-------hhhHHHHH----HHHhcc-CChhHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhhcCCCHHH
Q 000201 1581 S-T--R-------VDPLVGDL----LSSLQV-SDAGIREAILTALKGVLKHAGK-SVSSAVKIRVYSVLKDLVYHDDDHV 1644 (1866)
Q Consensus 1581 ~-~--~-------~~~~l~~L----~~~l~~-~~~~vr~~~l~aL~~vi~~~~~-~l~~~~~~~i~~~L~~~l~~~~~~v 1644 (1866)
. + . +...+.++ +..++. .+..+....++++..++...+- .+....+..++..+...+.+.|..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1 1 12223333 233333 3566777889999988887763 4777888888888888888889999
Q ss_pred HHHHHHHHHHHHhhcC
Q 000201 1645 RVSAASILGIMSQCME 1660 (1866)
Q Consensus 1645 r~~aa~~l~~L~~~~~ 1660 (1866)
+..+..|+|.+....+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999876544
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.14 Score=55.01 Aligned_cols=135 Identities=22% Similarity=0.242 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHH-hCcCchhcHHhHHHHH------------HHHcCCCCHHHHHHHHHHHHHHHHhhcHh-------
Q 000201 632 RREGALLAFECLCEK-LGRLFEPYVIQMLPLL------------LVAFSDQVVAVREAAECAARAMMSQLSAQ------- 691 (1866)
Q Consensus 632 ~r~~al~al~~L~~~-l~~~~~p~v~~llp~l------------l~~~~D~~~~VR~~a~~al~~i~~~l~~~------- 691 (1866)
.|.+|+.++..+++. .++.|-.|+..++|.- .....|+++.||.+|+.++..+.....++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 588999999999998 5577888888777743 34567999999999999998888743221
Q ss_pred ----------------hHHhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhh--HHhhhcchhHHHhhhccCCChHH
Q 000201 692 ----------------GVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKV 752 (1866)
Q Consensus 692 ----------------~v~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~--~~~~l~~iv~~l~~~L~D~~~~V 752 (1866)
.+..+-..|+..|.. .+..+-...+++|..+..+.|-. -...+++++..+...+.+.++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 012333444455544 45677778889999999887754 23456777888888888899999
Q ss_pred HHHHHHHHHHHHhh
Q 000201 753 QSAGQTALQQVGSV 766 (1866)
Q Consensus 753 R~aA~~aL~~l~~~ 766 (1866)
|.++..+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.17 Score=57.18 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhHHHHHHhh
Q 000201 627 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKG 703 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~llp~L~~~ 703 (1866)
+++|...-.++..+..|++.-.+.+.+.+..++..+.+.++++...|-++|..++..+++.+..... +.++-.|+..
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3568777778888888888777777888888888999999999999999999999999998876543 3344444444
Q ss_pred cCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc
Q 000201 704 LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 704 L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
-..++-.+|..|-.+|.+|.+....+ .+++.|...++..++.+|..++.|.......++
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 45566788999999999999886554 455666667888999999999988877765554
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.8 Score=57.27 Aligned_cols=193 Identities=16% Similarity=0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH------
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------ 690 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~------ 690 (1866)
+.++.+.+.+++- ...+ +..++..+.......-..++..+++.+..-..-+...+|..+.-++..+......
T Consensus 359 ~~~i~~~i~~~~~-~~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKI-TPLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCC-CHHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4455666655432 1122 3333444444332222333444443332222234778999998888887763321
Q ss_pred -hhHHhHHHHHHhhcC----CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc---cCCChHHHHHHHHHHHH
Q 000201 691 -QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 691 -~~v~~llp~L~~~L~----~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L---~D~~~~VR~aA~~aL~~ 762 (1866)
..+..++|.+.+.|. ..+-..+..++.+||++... ..++.+...+ .+..+.+|.+|++||..
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 112556666665553 34555678889999977652 2223333333 23457899999999998
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCC--hhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHH
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 832 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~ 832 (1866)
++..... .+.+.++....|+. ..+| .|+..+..+ .|....+-.+....-.+++..|+..
T Consensus 507 ~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 507 LAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHHH
Confidence 8764432 23334444444444 3467 466666542 1333333333333334555555543
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.62 Score=49.86 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLVDEAPNMISTLIVLLSDSDS-TTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~-~~~~~~~~~~il~~L~~ll~d~~~-~v~~~A~~aL~~l~~~ 1420 (1866)
..++.+...+...+++.++..|-.++..++..++.. ...+..+...+++.++..++++++ .+...+..++..+...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 446778888888899999999999999999999887 556668899999999999986554 5677788888777643
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.60 E-value=13 Score=45.95 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=127.0
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--HH-HH
Q 000201 861 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF-EH 933 (1866)
Q Consensus 861 L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~l-~~ 933 (1866)
+...+..+++.+...++..+..++..-... ..+.+.+++...+++..+......++++++.+.+.-... .+ .+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 334666778899999999999988632222 233466777777765432334445667777776543322 11 12
Q ss_pred HHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCC-ChHHHHHHHHHHHHHHHhhc--
Q 000201 934 ILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA-- 1006 (1866)
Q Consensus 934 ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~-~~~VR~~a~~al~~i~~~~~-- 1006 (1866)
.++.+...++.. +..+--.++.|+--+. +.......+ ..++|.+...+.+. -+.|-.-++.++..++..-.
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 344444444332 2222222222221111 111111122 35777777766543 34444445556655554211
Q ss_pred -------ccchhchHHhHhcccCCCchH--HHHHHHHHHHHHHHHhcCC------------cccccccCCCCCCCcchHH
Q 000201 1007 -------TTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGT------------SGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 1007 -------~~~i~~llp~l~~~l~d~~w~--vR~~s~~ll~~ll~~~~~~------------~~~~~~~~~~ed~~~~~e~ 1065 (1866)
...++.=++.+.+.+....|. =-...++.+.+.+...... +|...-..-..++.+-.|.
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 011121112222333333332 1122334444444321110 0100000000122222222
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH--HHHHHHHhhcCCCHHHHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQVA 1142 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~--l~~~L~~~l~~~~~~~R~~A 1142 (1866)
+.+ +.+.. -+++..|...+ ...++.+-..|+.=++.++.+.|.. +.++.. .-..+.+.+.++++++|..|
T Consensus 344 ~~k-----f~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 344 ADR-----LNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred HHH-----HHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 211 11111 12334443333 2223444566777788888877642 122222 23445666778888888888
Q ss_pred HHHHHHHH
Q 000201 1143 GRALGELV 1150 (1866)
Q Consensus 1143 ~~~L~~lv 1150 (1866)
+.|+..+.
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 88887764
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.44 E-value=11 Score=46.45 Aligned_cols=298 Identities=16% Similarity=0.051 Sum_probs=143.8
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccch--hH-H
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--EI-A 773 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~i-~ 773 (1866)
.++..|..++|.+...++.+|..++...+... ...++.++..+...++.+ +...+..|+.||..+...-.-. .+ .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 34446678899999999999998886544321 112233445555555533 3666777888888776422111 11 2
Q ss_pred hHHHHHHHhhCCCChhHHH---HHHHHHhccccccCCc-chhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCc
Q 000201 774 SLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr~---al~~L~~~~~~~~~~~-~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
..++.|...+.......+- ++-.+--.+|...... -.-..++|.+...++.. ..++-+-+..++-|+...-.+..
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 2445555554432212221 2222222345432111 11235778777777654 34566667778888876321110
Q ss_pred chhhhHh-----hhhHHHHHHhcC---CCHhHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 849 DMIPYIG-----LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 849 ~l~~~~~-----~ll~~L~~~l~d---~~~~vR~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
.-..+.. .+.+. .+.+.. .++++.......-..+-+.+.+ ..|++....+....-.-+. ..+...++
T Consensus 265 ~~~~~~~~mv~~~l~~~-l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp-~H~se~FW-- 340 (429)
T cd00256 265 VKKTAALQMVQCKVLKT-LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP-VHKSEKFW-- 340 (429)
T ss_pred hhhhHHHHHHHcChHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC-CCCCchHH--
Confidence 0011111 22222 222322 2344433322222222222211 1244444333322111111 01111111
Q ss_pred HHHHHHhChhHHHHHHHHHHHHhc-cCChhHHhHHHHHHHHhhhhhc--hhhHhHHHHHHHHHHhhccCCChHHHHHHHH
Q 000201 920 SEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLADENESVRDAALG 996 (1866)
Q Consensus 920 ~~l~~~~g~~~l~~ll~~l~~~l~-~~~~~vR~~al~~l~~L~~~~g--~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~ 996 (1866)
.+-+..+..+. -+++..+.+.+. +.++.+-.-|+.=+|.+++..| .....-+. ....+++.+.+++++||..|+.
T Consensus 341 ~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 341 RENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHH
Confidence 11112222211 123444555553 3456666667777888887764 33222111 4667888999999999999999
Q ss_pred HHHHHH
Q 000201 997 AGHVLV 1002 (1866)
Q Consensus 997 al~~i~ 1002 (1866)
|...++
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 988765
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.1 Score=56.74 Aligned_cols=223 Identities=11% Similarity=0.121 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhccchh-HHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCC-cchhhhHHHHHHHhhcC-CCHHHH
Q 000201 754 SAGQTALQQVGSVIKNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD-APSLALLVPIVHRGLRE-RSAETK 830 (1866)
Q Consensus 754 ~aA~~aL~~l~~~i~~~~-i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~-~~~l~~l~p~L~~~l~d-~~~~vr 830 (1866)
..-.++|..+...+.... .+.++|.|++.+.+.. .+...+..+. .+.+..+ ..+...++|.|...++- ..-++.
T Consensus 291 s~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~-~vp~~LP~v~--~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~ 367 (700)
T KOG2137|consen 291 SSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK-MVPIVLPLVL--LIAEGLSQNEFGPKMLPALKPIYSASDPKQAL 367 (700)
T ss_pred HHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc-ccccccchhh--hhhhccchhhhhhhhhHHHHHHhccCCcccch
Confidence 333444444444443332 3677777777665432 1111110000 0111111 11234566666665552 222333
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCH
Q 000201 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSN 909 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~ 909 (1866)
..-.+-+..+.+.... ..+.+.++|.|...+++.+..++..+.+.++.+++.++.... ..++|.+.+.....+..
T Consensus 368 l~i~e~mdlL~~Kt~~----e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPP----EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred hhHHhhHHHHHhhCCh----HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 3322223333332211 346678999999999999999999999999999998874432 35778777665555556
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc
Q 000201 910 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
.++..++.+++.+++.+..-..-+.+..+.+..+..++.+.-+.+.++..++.......+-....++|.++...
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 68889999999988777655444444556666777788888888888877765443311113456667666554
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.29 E-value=7.4 Score=44.43 Aligned_cols=201 Identities=14% Similarity=0.085 Sum_probs=126.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHH
Q 000201 1511 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD 1590 (1866)
Q Consensus 1511 ~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~ 1590 (1866)
+.|+-.++...++......+++|..++..-. ...|.+..++....+.++...+..+.+.+..+...+++.-+++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~ 78 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQP 78 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3344445555678888899999998876531 455777787777777778888888888888888777777677776
Q ss_pred HHHHh--c--------cCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhc
Q 000201 1591 LLSSL--Q--------VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCM 1659 (1866)
Q Consensus 1591 L~~~l--~--------~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~l~~L~~~~ 1659 (1866)
++..+ + +...+...+...+++.++...+. .-..++..+...+ .++++.++..+.+.+..++...
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 66651 1 11245556666788888876554 4455555666666 6777888888888888888322
Q ss_pred ChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccC----CcchHHHHHHHHhhhcCCChh
Q 000201 1660 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFP 1724 (1866)
Q Consensus 1660 ~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~----~~~~~~~~~~l~~~~~~~~~~ 1724 (1866)
-- ++.....-+.+.+..+. |-.....+..++..-|..-.. +.+...++..+.++..+.+..
T Consensus 154 vv-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 VV-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred hc-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 11 13333333334332222 333344455555554443332 235566788888888777753
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=36 Score=47.47 Aligned_cols=172 Identities=14% Similarity=0.048 Sum_probs=104.7
Q ss_pred HHHHHHhHhhhcc-chhcHHHHHHHHHh-ccCCCchhHHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHHhCCCChhH
Q 000201 1330 LAKEAAETVTLVI-DEEGVESLVSELLK-GVGDNQASIRRSSAYLIGYFY-KNSKLYLVDEAPNMISTLIVLLSDSDSTT 1406 (1866)
Q Consensus 1330 ~a~~~l~~l~~~~-~~~~~~~ll~~L~~-~l~~~~~~vR~~a~~~l~~l~-~~~~~~~~~~~~~il~~L~~ll~d~~~~v 1406 (1866)
.+..|.+.+..+. +....+.++..+.. ...+..|++|.+++..+..+. .+.-........++...+...++|.+.+|
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~v 1585 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEV 1585 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHH
Confidence 3334444444433 33446777777764 345677999999999887663 33322344556788888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhh--ccCCHHHHH
Q 000201 1407 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL--ISGSAELRE 1484 (1866)
Q Consensus 1407 ~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L--~~~~~~~r~ 1484 (1866)
|+.|..+|+.+++...-+..++-.... .... .+.+.....
T Consensus 1586 re~Aa~~Lsgl~~~s~~~~~~~k~d~~--------------------------------------~~~~~s~s~~~i~~H 1627 (1710)
T KOG1851|consen 1586 REEAAKCLSGLLQGSKFQFVSDKRDTT--------------------------------------SNILQSKSKDEIKAH 1627 (1710)
T ss_pred HHHHHHHHHHHHhccccccchHhhhhh--------------------------------------hhhhhhcchHHHHhh
Confidence 999999999998754332222000000 0001 111233455
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q 000201 1485 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542 (1866)
Q Consensus 1485 ~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~ 1542 (1866)
.|..++|.++-.. +-.+..+++..+..+.+..++ +..++.++=.++.+.-+....
T Consensus 1628 gavlgLgA~Vlaf-Py~vP~wip~~L~~Ls~fa~e--~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1628 GAVLGLGAIVLAF-PYVVPLWIPKPLMNLSSFARE--SAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred hhHHHHHHHHHhc-cccchhhhHHHHHHHHhhcCC--chHHHHHHHHHHHHHHHHhhh
Confidence 7788999999877 444555555554444444444 467888888888776554433
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.52 Score=50.02 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChh----------------------------------h-----H
Q 000201 1548 LPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD----------------------------------P-----L 1587 (1866)
Q Consensus 1548 lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~----------------------------------~-----~ 1587 (1866)
.|+|++.+++.+... +..+|..+.+++|.|..+.|..- . .
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 389999999999887 78999999999999965433211 1 1
Q ss_pred HHHHHHHhccCC-hhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1588 VGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1588 l~~L~~~l~~~~-~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
+..|+..++++. ..-+..+++|+-.+++..|.+. -++.+++++.+...+.+.++..|+..-.-++.+.
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 223344444332 3334456666666666666655 3677777777666666555555555444444443
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.1 Score=49.98 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..-+++.....|....+.+.|.+|..+|-. ..|...+.+ ..+.++.+.+ ++-++-..-...++.+-.+.....-+
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvP-YFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVP-YFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 445566666666655555667777666532 223333322 2233443333 33333344444455555555555556
Q ss_pred chhcHHhHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhcHhh--H-HhHHHHHHhhcC--CCChhhHHHH
Q 000201 651 FEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLE--DKAWRTKQSS 715 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~------~D~~~----~VR~~a~~al~~i~~~l~~~~--v-~~llp~L~~~L~--~~~w~~r~~a 715 (1866)
..||+.+++|.++.|+ ++++. .+|+-|+..++.++++++... . +.+...+++..- +....+.++|
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7999999999988765 23333 499999999999999887632 2 445555555443 3457888999
Q ss_pred HHHHHHHHhh
Q 000201 716 VQLLGAMAYC 725 (1866)
Q Consensus 716 ~~~L~~l~~~ 725 (1866)
+..+..+...
T Consensus 351 lkgls~l~ke 360 (450)
T COG5095 351 LKGLSILSKE 360 (450)
T ss_pred hhhhhhhchh
Confidence 9888877654
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.55 Score=56.71 Aligned_cols=90 Identities=27% Similarity=0.344 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc----------CCCHhHHHHHHHHHHHHHhhcCCCC---hhhHHH
Q 000201 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVS 897 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~----------d~~~~vR~~a~~aL~~l~~~~g~~~---~~~l~~ 897 (1866)
....+++..|.. +..-.+.+|+-+++|.+..++. +.+|.+|..|+..++.++..++..+ .+.++.
T Consensus 235 ~~lm~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~ 312 (343)
T cd08050 235 IYLMRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITR 312 (343)
T ss_pred HHHHHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 334445555544 3335678999999999998873 4578999999999999999998763 234444
Q ss_pred HHHHhcccCCC-HHHHHHHHHHHHHH
Q 000201 898 WLLDALKSDNS-NVERSGAAQGLSEV 922 (1866)
Q Consensus 898 ~L~~~L~~~~~-~~~R~~a~~~L~~l 922 (1866)
.+.+.+.+... ....-+++.+|+.+
T Consensus 313 tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 313 TLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 45555554432 22356777777654
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.1 Score=52.24 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhh------HHHHHHHH
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 1594 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~------~l~~L~~~ 1594 (1866)
.+.+-|..++.-|..+++.+.....-.--..+..++..+++++..+|..|+..+|....-.|.... .+..|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356778888988888888765432111112234455588999999999999999999765555433 35567777
Q ss_pred hcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcChhH--HHH-HH
Q 000201 1595 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 1668 (1866)
Q Consensus 1595 l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~l~~L~~~~~~~~--~~~-~l 1668 (1866)
+.. .+.++|..++.|+..+|.+......+-..-.=+..|...+.+ .+-..+..+..+++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457889999999999999876543321111224556666666 445566788899999887654432 111 12
Q ss_pred HH-HHhccCCCCcchhhhHHHHHHHHHhhCC
Q 000201 1669 QE-LLNLASSPSWAARHGSVLVFATFLRHNP 1698 (1866)
Q Consensus 1669 ~~-ll~~~~~~~~~~r~~~~~~L~~~l~~~p 1698 (1866)
+. +..+....++..+..++.++...+...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 22 2344555566666666666666665543
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.32 Score=51.55 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=89.0
Q ss_pred hcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccchhHHh-HHHHHHHhh-CCCChhHHHHHHHHHhccccccCCcch
Q 000201 734 LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGL-TDPNDHTKYSLDILLQTTFVNTVDAPS 810 (1866)
Q Consensus 734 l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~-lv~~L~~~l-~d~~~~vr~al~~L~~~~~~~~~~~~~ 810 (1866)
+|.+++.+++.++ +.++.+|.++.++||.+|.. +|+... +....-... .+.+...... .+.........++-.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI--SLPMMGISPSSEEYY 83 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh--HHhhccCCCchHHHH
Confidence 4778888888776 44689999999999999863 343311 111000000 0101111110 111111111222233
Q ss_pred hhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 811 LALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~~~-~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
...++..+.+.++|.+- .-...+.+++..+.+.++. + ..+|+++++|.+...+.......|+.....|+.++..
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44456677778888653 3344677777777765544 2 3899999999999999977778999888888888764
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=32 Score=45.63 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=59.7
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
..++.+.....+++|++|.+-......+...|...+..+...++..++.+-+|.+|+++..+.+.+..+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~n 352 (1014)
T KOG4524|consen 278 IALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLHN 352 (1014)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 344555555578899999998888877777777777777667888889999999999999999999988776553
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.96 Score=50.35 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHHh-----cCC----CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000201 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDR----FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1486 a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l-----~~~----~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~ 1556 (1866)
.......+.+.. .--+.||+.+++|.++..+ +.. ..-.+|..|...++-.+.+++..++..-|.+.++++
T Consensus 256 v~~m~~sLL~N~-~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 256 VVMMYSSLLKNK-YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHHhcCC-ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 344444555443 3356788888888776543 322 112478888888999999999999888999999999
Q ss_pred HHhcCC--CHHHHHHHHHHHHHHH------hccCChhhHHHHHHHHhcc
Q 000201 1557 KCLQDS--TRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQV 1597 (1866)
Q Consensus 1557 ~~l~d~--~~~vR~~Aa~aLg~L~------~~~~~~~~~l~~L~~~l~~ 1597 (1866)
|.+-|. -....--|.+++..+. .+.|+.+-+...+.+.+..
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~ 383 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK 383 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc
Confidence 998886 3467777888888772 1356777666666555543
|
|
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.72 E-value=19 Score=45.52 Aligned_cols=168 Identities=19% Similarity=0.292 Sum_probs=92.3
Q ss_pred CHhHHHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHH
Q 000201 869 IPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 936 (1866)
Q Consensus 869 ~~~vR~~a~~aL~~l~~~~g~~------------~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~ 936 (1866)
....|....+++..+...+-+. +.+-+++.+.+.+.+.. ..+|-.++.+++++...+|....+.++.
T Consensus 209 ~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~-~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 209 NSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSID-SFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred HHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCccccc-HHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 3445555566666665554331 23345555555554433 4588899999999998887653333322
Q ss_pred ---HH-----HHHhcc------CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC--------hHHHHHH
Q 000201 937 ---DI-----IRNCSH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--------ESVRDAA 994 (1866)
Q Consensus 937 ---~l-----~~~l~~------~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~--------~~VR~~a 994 (1866)
.. +..++. .++.+..+++..++ ++...+-++...+ +.|.+.+++.-+. ..+|+++
T Consensus 288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeeccc
Confidence 11 111111 25556666666666 6666555433322 4555666665332 2466665
Q ss_pred HHHHHHHHHhhcccchhc----hHHhHh-cccCCCchHHHHHHHHHHHHHH
Q 000201 995 LGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 995 ~~al~~i~~~~~~~~i~~----llp~l~-~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
.=-+..+...++....+. +.-.+. ..++|+.-.+|+++.-.+-+++
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 544444444444443333 222222 3678888899998877766655
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.8 Score=46.29 Aligned_cols=135 Identities=23% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 1548 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l 1548 (1866)
.-+...+.+.++..|-.++..++.+++..+.+.+..+....+..++.+++...+..++..++.++..++......
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~----- 102 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK----- 102 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-----
Confidence 334455667778889999999999999887777877778888888999988778889999999999998766432
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHH
Q 000201 1549 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628 (1866)
Q Consensus 1549 p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~ 1628 (1866)
|.+.+ ..+ .|++..+++.+++.+++ ......++.+|..++...+..+. ++..+
T Consensus 103 p~l~R--------------ei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r-p~~~k 155 (165)
T PF08167_consen 103 PTLTR--------------EIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR-PFANK 155 (165)
T ss_pred CchHH--------------HHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc-chHHH
Confidence 22211 111 14444555555555543 34566777777777776665544 45555
Q ss_pred HHHHHHH
Q 000201 1629 VYSVLKD 1635 (1866)
Q Consensus 1629 i~~~L~~ 1635 (1866)
+-..+..
T Consensus 156 i~~~l~~ 162 (165)
T PF08167_consen 156 IESALLS 162 (165)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=10 Score=47.66 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh-----hhHHHHHH---HHHHHHcCCChhHHHHHHHHHHHHHhhh----C
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSR---LLDQLMKSDKYGERRGAAFGLAGVVKGF----G 607 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~-----~~~~~l~~---ll~~L~~~~~~~~R~~A~~~L~~l~~~~----g 607 (1866)
+.+...|+.++..||+.++..+..+.+..++ ....+++. .+..|+.++-+.+|..|..++..+.... +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456677888888999888876655544332 12223332 3445667777899999999988777633 2
Q ss_pred cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000201 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 687 (1866)
Q Consensus 608 ~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~ 687 (1866)
+..+ .+++..+..-+..+....+|-+...++..++...-. .|.+.+++|.+-..+.|....||-++.+.+-.|- .
T Consensus 257 ~~i~--~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik-~ 331 (1005)
T KOG1949|consen 257 PTIL--IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK-A 331 (1005)
T ss_pred HHHH--HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH-h
Confidence 2222 244444444444444456787777777777655432 5667889998888999999999999988877663 2
Q ss_pred hcHhhHHhH--HHHHHhhcCCCC
Q 000201 688 LSAQGVKLV--LPSLLKGLEDKA 708 (1866)
Q Consensus 688 l~~~~v~~l--lp~L~~~L~~~~ 708 (1866)
.....+-.+ +..++..|..++
T Consensus 332 vra~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 332 VRAAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred hhhhhhhccccHHHHHHHHhccc
Confidence 322222222 334555555444
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.47 E-value=30 Score=44.18 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred hcchhHHHhhhccCCC-hHHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhhCCCC--hhHHHHHHHHHhccccccCCc
Q 000201 734 LPKIVPKLTEVLTDTH-PKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~-~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l~d~~--~~vr~al~~L~~~~~~~~~~~ 808 (1866)
+..++..++..+..+. +..=.++...+..+.. .+++..+..++..|+....-.+ +..-.++..|....
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~------- 246 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSH------- 246 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCc-------
Confidence 3455555555554332 3334667777777654 4455567777777777654331 11223444444311
Q ss_pred chhhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHhhhcCCCcchh--hh-HhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 809 PSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMI--PY-IGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~------d~~~~vr~~a~~~l~~l~~~l~~~~~l~--~~-~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
.....+-.+...+. .++..+-+.|...++.+.-..+. +.+. ++ ...+++.+...++.+++.|-......
T Consensus 247 -~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~ 324 (464)
T PF11864_consen 247 -LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLL 324 (464)
T ss_pred -cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCCCeehHHHHHH
Confidence 11233444444442 23456667788888877653322 1111 11 12489999999997777766666666
Q ss_pred HHHHH-hhcC
Q 000201 880 IGSLI-RGMG 888 (1866)
Q Consensus 880 L~~l~-~~~g 888 (1866)
+..+. ..++
T Consensus 325 i~~ll~~~~~ 334 (464)
T PF11864_consen 325 INRLLDGKYG 334 (464)
T ss_pred HHHHHhHhhh
Confidence 66666 4443
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=36 Score=45.11 Aligned_cols=275 Identities=18% Similarity=0.219 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchh--------cHHHHHHHHHhccCCCc
Q 000201 1291 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDNQ 1362 (1866)
Q Consensus 1291 ~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~ll~~L~~~l~~~~ 1362 (1866)
..+++.++...|..|.+.+-..+=.++..+.+++..++..+..|+-.|+..++.. ..+-++..+...++...
T Consensus 569 ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~ 648 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSG 648 (1014)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCC
Confidence 4567888888899998888777777888888999999999999999888866432 23445555555554321
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhh-hHHHHHHHHhhhh
Q 000201 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTSR 1441 (1866)
Q Consensus 1363 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~-l~~~l~~~l~~~~ 1441 (1866)
. ...+-..+..++.+++....+++.++++.++..++.....-...-+..|-.+++...+.+... ++....+......
T Consensus 649 ~--s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~ 726 (1014)
T KOG4524|consen 649 M--SPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQS 726 (1014)
T ss_pred C--CchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 1 122344555666666666777888888888777764332111111222223332222111111 1111111111000
Q ss_pred hhhhhhhcCCccccCCcCCCCCc-----------cccHHHHH-----HhhccCC----HHHHHHHHHHHHHHHhhcC-hh
Q 000201 1442 DKERRKKKGGPILIPGFCLPKAL-----------QPLLPIFL-----QGLISGS----AELREQAALGLGELIEVTS-EQ 1500 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l-----------~~ilp~l~-----~~L~~~~----~~~r~~a~~~L~~l~~~~~-~~ 1500 (1866)
.. .. .. .|+.+ ..+.+.+. .++..+. ++.+..= --.+=-..+. ..
T Consensus 727 ~k-----~l--~e-----~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e--~edens~~~d~ep 792 (1014)
T KOG4524|consen 727 TK-----VL--NE-----LPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEE--VEDENSEYTDTEP 792 (1014)
T ss_pred HH-----Hh--hc-----chhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCC--ccccccCCCCCCC
Confidence 00 00 00 01111 01111111 1121111 0000000 0000000000 00
Q ss_pred hhhh---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHH---HHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000201 1501 SLKE---FVIPITGPLIRIIGDRFPWQVKSAILSTLSI---IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574 (1866)
Q Consensus 1501 ~l~~---~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~---L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aL 1574 (1866)
...+ .+..|++--++.+++. +-.+|..+|.+|.. ++...+..+.|.+.+.|+.++.++.+.++-+-..|..|+
T Consensus 793 ~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 793 ILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred CCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Confidence 0111 2445666667777763 66788999988874 556667778888999999999999999999999999999
Q ss_pred HHHHhccC
Q 000201 1575 GKLSALST 1582 (1866)
Q Consensus 1575 g~L~~~~~ 1582 (1866)
-++....+
T Consensus 872 ~~m~~~sg 879 (1014)
T KOG4524|consen 872 EQMGKYSG 879 (1014)
T ss_pred HHHHHHhh
Confidence 98876544
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=93.33 E-value=26 Score=43.16 Aligned_cols=310 Identities=16% Similarity=0.163 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHHHhhcC----hhhhhhhhhhhhHHHHHHhcC------CCCHHHHHHHHHHHHHHHH------hcCC
Q 000201 1479 SAELREQAALGLGELIEVTS----EQSLKEFVIPITGPLIRIIGD------RFPWQVKSAILSTLSIIIR------KGGI 1542 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~----~~~l~~~v~~i~~~Li~~l~~------~~~~~vr~~al~~L~~L~~------~~~~ 1542 (1866)
+.+.|..|..++....+... ...+...++.++..+.+-+.. .++..+-..|+.+++.++. .++.
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 44556667766666554432 123444444444444443332 2356777899999997764 2232
Q ss_pred CCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHhcc--CChhHHHHHHHHHHH
Q 000201 1543 ALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST------RVDPLVGDLLSSLQV--SDAGIREAILTALKG 1612 (1866)
Q Consensus 1543 ~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~~~~------~~~~~l~~L~~~l~~--~~~~vr~~~l~aL~~ 1612 (1866)
+ +.--++...+..+.++ +..+...+..+|..= .+++ ++..++. .+..+.+ +...+....+.+++.
T Consensus 86 d---~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 86 D---FASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-KFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred H---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHH
Confidence 2 2223566667777776 567777777776532 1111 2222222 2223332 345677778889999
Q ss_pred HHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHhccCCCCcchhhhHHHHHH
Q 000201 1613 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ-LADLLQELLNLASSPSWAARHGSVLVFA 1691 (1866)
Q Consensus 1613 vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~-~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 1691 (1866)
++.+.+..|. .....=++.+...+-+....+|..+..+.-.+...++++. +...+...++....+.
T Consensus 161 ll~q~p~~M~-~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~------------ 227 (372)
T PF12231_consen 161 LLSQFPQQMI-KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG------------ 227 (372)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc------------
Confidence 9998887766 3334334455555556677788887666655555555432 3333333332211111
Q ss_pred HHHhhCCCcccCCcchHHHHHHHHhhhcC-CChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHH
Q 000201 1692 TFLRHNPSAISMSPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 1770 (1866)
Q Consensus 1692 ~~l~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR 1770 (1866)
.+.+.+.+.+...+.+ ++....--...++-.++... ..+.+.++.+.|...-.+++++++.+|
T Consensus 228 -------------~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~---~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 228 -------------KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS---RLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred -------------cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc---hhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 1223333333333333 11100000111111111110 022346788888888889999999999
Q ss_pred HHHHHHHHHHHhh---CcchhhhhHhhHHHHHHhhhccCc-c----hhhhhHHHHHHHhh
Q 000201 1771 RRALSALKSVAKA---NPSAIMVHVALFGPALAECLKDGS-T----PVRLAAERCAVHAF 1822 (1866)
Q Consensus 1771 ~~a~~~l~~~a~~---~~~~~~~~l~~l~p~l~~~~~~~~-~----~vk~aae~a~~~l~ 1822 (1866)
..|..+=+.+... ........+..+.-++....+.+. . .++.++..++..++
T Consensus 292 ~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 292 IQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 9999988877653 222235567777777777766543 3 56666666666655
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.28 E-value=32 Score=44.02 Aligned_cols=383 Identities=14% Similarity=0.091 Sum_probs=199.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh--ccchhhhhH
Q 000201 1312 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 1388 (1866)
Q Consensus 1312 il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~--~~~~~~~~~ 1388 (1866)
+++.++..++++..-++..+++.+..+-.-..+.+ ...+.+.....+++++..++..|+.++..|..+ ....++.++
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 45666667777777888888888888744444433 556666667777788888999999999988653 355688999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcc---hhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCcc
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 1465 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~---~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 1465 (1866)
|.+++.|+.+-++-+-++.....+. ++...+.+ .-+.+...+.+.+
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~---fVe~fseELspfa~eLa~~Lv~qF---------------------------- 589 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMES---FVEYFSEELSPFAPELAGSLVRQF---------------------------- 589 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHH---HHHHhHHhhchhHHHHHHHHHHHH----------------------------
Confidence 9999999999887776655544333 33322222 2222332222211
Q ss_pred ccHHHHHHhhccC-----CHHHHHHHHH----HHHHHHhhcCh-hhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000201 1466 PLLPIFLQGLISG-----SAELREQAAL----GLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 1535 (1866)
Q Consensus 1466 ~ilp~l~~~L~~~-----~~~~r~~a~~----~L~~l~~~~~~-~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~ 1535 (1866)
+.+....+.++ ..+.++.++. ++..++-.... ..+-.+.....-|.+..+-...-.+.-.-++..+..
T Consensus 590 --lkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg 667 (970)
T COG5656 590 --LKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDG 667 (970)
T ss_pred --HHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 11111111111 1123333332 22333322210 112223333444444433221222333334443332
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCC-------hhhHHHHHHHH-hccCCh--hHHH
Q 000201 1536 IIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTR-------VDPLVGDLLSS-LQVSDA--GIRE 1604 (1866)
Q Consensus 1536 L~~~~~~~~~~~lp~L~~~l~~~l~d~~-~~vR~~Aa~aLg~L~~~~~~-------~~~~l~~L~~~-l~~~~~--~vr~ 1604 (1866)
..-. -..+.|-.+.+...+.+++.++. ...-..++-++.+++.++.. .-..+-++... +.+.+. .=+.
T Consensus 668 ~tf~-skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~ 746 (970)
T COG5656 668 YTFM-SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFI 746 (970)
T ss_pred hhHH-HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHH
Confidence 2111 11233566777888888888875 46777888889998776522 11222333322 233332 2255
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcChhHHHHHHH-------HHHhcc
Q 000201 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAASILGIMSQCMEDGQLADLLQ-------ELLNLA 1675 (1866)
Q Consensus 1605 ~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~--~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~-------~ll~~~ 1675 (1866)
..++-+..++-+.+..+...|++.+.+..-..+. +....-+..+.+++-+-.-.-|.+. .++++ ++-.|.
T Consensus 747 ~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eT-LqiLe~qg~l~~FF~~wf 825 (970)
T COG5656 747 GVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKET-LQILEEQGYLQSFFEKWF 825 (970)
T ss_pred HHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHH-HHHHHHcCcHHHHHHHHH
Confidence 5667777777778887777888877776653332 2222233444444322221223222 12221 222454
Q ss_pred CCCC-c---chhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHH
Q 000201 1676 SSPS-W---AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAS 1729 (1866)
Q Consensus 1676 ~~~~-~---~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a 1729 (1866)
+.-. + ..+.-+++++..+++..-........++.+-+.++....+=-..+|..+
T Consensus 826 ~~ipkfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nLg~vlv~l~~sLPeAir~ra 883 (970)
T COG5656 826 SQIPKFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRA 883 (970)
T ss_pred hcCcchhhhhhhHhHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 4421 1 1233456677777776533333345677777777776655444555544
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.6 Score=46.06 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=76.7
Q ss_pred chhcHHhHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHh-hHHhHHHHHHhhcCCCChhh
Q 000201 651 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~------------------D~~~~VR~~a~~al~~i~~~l~~~-~v~~llp~L~~~L~~~~w~~ 711 (1866)
..|++..++|.++.-.. |.--++|++|-+++..+....... .+..++..+..+|.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 35677788888876543 344589999999999998865443 357789999999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 746 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~ 746 (1866)
|.-+...|..++..+|..+...+..+++.+-..|+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998888774
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.52 E-value=36 Score=42.53 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=151.1
Q ss_pred hhHhhhhHHHHHHhcCC---CHhHHHHHHHHHHHHHh--hcCCCCh---hhHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q 000201 852 PYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIR--GMGEENF---PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 923 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~---~~~vR~~a~~aL~~l~~--~~g~~~~---~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~ 923 (1866)
++...++..+..+++++ ...+-..+.+++++-.. .+..+.+ ..++..++..++.+. .-..+..++..+.
T Consensus 149 ~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~---lhe~At~cic~ll 225 (559)
T KOG2081|consen 149 AQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDE---LHEEATECICALL 225 (559)
T ss_pred HhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccch---hhHHHHHHHHHHH
Confidence 34444555556666543 24555677777777666 3333322 245666677776432 2234445544433
Q ss_pred HHhChh----HHH-------HHHHHHHHHh-ccCChhHHhHHHHHHHHhhhhhchhhHh---HHHHHHHHHHhhccCCCh
Q 000201 924 AALGTV----YFE-------HILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQN---YLQQVLPAILDGLADENE 988 (1866)
Q Consensus 924 ~~~g~~----~l~-------~ll~~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~~---~l~~il~~ll~~l~d~~~ 988 (1866)
...-.. .+. .+++...... ...+...++++...|..++..+-..... +.-.++..++-...+.+.
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~ 305 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDT 305 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCch
Confidence 322110 011 2233333322 2346666777777777666544321110 112233344444455555
Q ss_pred HHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchH--HHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchH--
Q 000201 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE-- 1064 (1866)
Q Consensus 989 ~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~--vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e-- 1064 (1866)
+|-+..+..+..+-..+.... |...+ .|--..+++.-+.+++.=..+ .++.-+++.+..
T Consensus 306 evie~SF~fW~~lse~l~~~~-------------~~~~~~~frpy~~rLvs~l~~h~qlp~~----~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTD-------------DDEALGIFRPYFLRLVSLLKRHVQLPPD----QFDLPEEESEFFEF 368 (559)
T ss_pred hhhhhhHHhhhhhHHHHhccc-------------cHHHHHHhHHHHHHHHHHHHHHccCCCc----cccCccchhHHHHH
Confidence 555555544444333221110 00011 133334455555444321110 001001111111
Q ss_pred -----HHHHHHHHHhchhhhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHH
Q 000201 1065 -----AHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1137 (1866)
Q Consensus 1065 -----~~~~~l~~~lg~~~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~ 1137 (1866)
++++-..-.+|. ++.++.+++.+ +..+|+.-++|+-++..++.+.+..-.+++|.+++.+++.= .. ..
T Consensus 369 R~~v~dvl~Dv~~iigs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp-~Q-~~ 443 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP-EQ-AP 443 (559)
T ss_pred HHHHHHHHHHHHHHhCc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc-cc-hh
Confidence 111112222332 34555555543 35689999999999999999887766778999998886532 22 23
Q ss_pred HHHHHHHHHHHHHHHhccc--cccchHHHHhcccCCCCccchhhHHHHHHHHH
Q 000201 1138 RRQVAGRALGELVRKLGER--VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1188 (1866)
Q Consensus 1138 ~R~~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li 1188 (1866)
.|..+...+|++.+..... .+..++..+..++.... ....+..++..+.
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~ 494 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRIC 494 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHH
Confidence 8999999999887765432 34444445555544332 2233334444443
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.44 E-value=23 Score=48.69 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhH-hhHHHHHHhhhccCcchhhhhHHHHHHHhhccc
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 1825 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l-~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 1825 (1866)
..|..+++.|.+.+..+--.++-+|..+.-.+|..=.-.. ...+|.+.+.+..++..+-.-+-.|+..++..+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 3566777777788888877777777777766664321111 336888888888887777666666777776655
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.94 E-value=53 Score=43.20 Aligned_cols=339 Identities=15% Similarity=0.115 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhh
Q 000201 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL-LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 1441 (1866)
Q Consensus 1363 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l-l~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~ 1441 (1866)
+..-.+++..+..+..+-+...+++++.+++..... +...++.....+...++.+....
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l-------------------- 540 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWL-------------------- 540 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHH--------------------
Confidence 445566777777777776666655544444433221 22234444444444444333211
Q ss_pred hhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC-
Q 000201 1442 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR- 1520 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~- 1520 (1866)
+ .-|.++++.+|.+.+++.++ +.-+++..++..+|+.+ +..+.||...+...+-.++...
T Consensus 541 --------~--------e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C-~~~L~py~d~~~a~~~e~l~~~~ 601 (982)
T KOG2022|consen 541 --------G--------EHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETC-PESLDPYADQFSAVCYEVLNKSN 601 (982)
T ss_pred --------h--------cCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhh-hhhCchHHHHHHHHHHHHhcccc
Confidence 1 12568889999999999754 44456777799999988 7899999999887777666432
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHhcc------------
Q 000201 1521 FPWQVKSAILSTLSIIIRKGG-IALKPFLPQLQTTFIKCLQ----DS--TRTVRSSAALALGKLSALS------------ 1581 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~-~~~~~~lp~L~~~l~~~l~----d~--~~~vR~~Aa~aLg~L~~~~------------ 1581 (1866)
.....+..++.++|-++.... .....|+-.++..++..++ .. +.+-+.+.+.-++.+..+.
T Consensus 602 ~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 602 AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 345678889999998887664 2233355555555444332 21 3444444444444442210
Q ss_pred --CC----------hhhHHHHHHHHhcc------CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHH
Q 000201 1582 --TR----------VDPLVGDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643 (1866)
Q Consensus 1582 --~~----------~~~~l~~L~~~l~~------~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~ 1643 (1866)
|- +-.+..+++..++. .+.++.+..+..+..-+...+..+.+++++.+..++........-.
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~ 761 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAV 761 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHH
Confidence 00 11122222222221 3456667666666655666666777899999999988854443322
Q ss_pred HHHHHHHHHHHHHhh---cC--hhHHHHHHHHHHhccC----CCCcchhhhHHHHHHHHHhhCCCcccC-CcchHH-HHH
Q 000201 1644 VRVSAASILGIMSQC---ME--DGQLADLLQELLNLAS----SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLS-ILD 1712 (1866)
Q Consensus 1644 vr~~aa~~l~~L~~~---~~--~~~~~~~l~~ll~~~~----~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~-~~~ 1712 (1866)
.-...+.|+-..... .| ...+...++..+.... .+..+....-...+..+++..|.-+.. ...+.. +..
T Consensus 762 tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~ 841 (982)
T KOG2022|consen 762 TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILI 841 (982)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHH
Confidence 222222222221110 00 0113333333222111 233333344455788888888875542 223333 444
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhhh
Q 000201 1713 RLKSSLKDEKFPLREASTKALGRLLLHQ 1740 (1866)
Q Consensus 1713 ~l~~~~~~~~~~~r~~a~~alg~ll~~~ 1740 (1866)
.-...++++.+..-+++..-+..++.+.
T Consensus 842 ~a~~ll~~pE~~~i~aa~qF~t~~~~~~ 869 (982)
T KOG2022|consen 842 CAFILLNSPEPTTIRAASQFLTALATYA 869 (982)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhhc
Confidence 6677788887766666666665555544
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.88 E-value=19 Score=45.31 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHhhHHhHHH-HHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCC
Q 000201 671 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 748 (1866)
Q Consensus 671 ~~VR~~a~~al~~i~~~l~~~~v~~llp-~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~ 748 (1866)
..-|-.++.+++.++..++......++. .|..+|++.+--.|..+..++..++.......... .+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4567788999999999998888777776 58899999999999999999999998765432111 234455555666643
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=91.82 E-value=28 Score=41.21 Aligned_cols=214 Identities=20% Similarity=0.176 Sum_probs=134.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHh-hhC-cchh-hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-cCchhc
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPY 654 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~-~~g-~~~l-~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~-~~~~p~ 654 (1866)
.+...-...+|..-.++..-|...++ ... ...+ ....+...|-+.+...-+.-+-.-|+..+..+.+..| ..+...
T Consensus 15 ~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~d 94 (307)
T PF04118_consen 15 ALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQD 94 (307)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhh
Confidence 33333334556655555555555554 111 1111 1123455566666655555555568999999998887 334444
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh---HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~---v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
+.-..|.++..+......||-.-.+.+....-.+++.- .+.++..++.+|++++-.....+..++..+....+..
T Consensus 95 l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-- 172 (307)
T PF04118_consen 95 LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-- 172 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--
Confidence 55567777888888889999999998888777777721 2566667777888887777777788888887765544
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---------------chhHHhHHHHHHHhhCCCChhH-HHHHH
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-KYSLD 795 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---------------~~~i~~lv~~L~~~l~d~~~~v-r~al~ 795 (1866)
-++..++..+- ++|.+|..|..-+..-..... .++..-++..+...+.|++--| |.+++
T Consensus 173 ----~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LD 247 (307)
T PF04118_consen 173 ----YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLD 247 (307)
T ss_pred ----HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHH
Confidence 23333444333 468899988877765443322 1222346778888888887655 46788
Q ss_pred HHHh
Q 000201 796 ILLQ 799 (1866)
Q Consensus 796 ~L~~ 799 (1866)
.+..
T Consensus 248 lLl~ 251 (307)
T PF04118_consen 248 LLLS 251 (307)
T ss_pred HHHH
Confidence 7765
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.5 Score=42.94 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhc-hhhHhHHHHHHHHHHhh
Q 000201 906 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDG 982 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ll~~ 982 (1866)
..+...|..+..+++.+++ .+..+.....|+++..+++. .+++|..++.+|..+...++ +++.|++++++-.++..
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4556688899999999999 77788888888888887753 66899999999999999887 57788888877777665
Q ss_pred c
Q 000201 983 L 983 (1866)
Q Consensus 983 l 983 (1866)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.1 Score=42.41 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=66.7
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 1429 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l 1429 (1866)
.++..+..+.|+.+.+|..++..+..+++... ......+.++..++..+.|+|+-|--+|..+|+.++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556666788889999999999999987655 33445688899999999999999999999999999999888777666
Q ss_pred HHH
Q 000201 1430 IKV 1432 (1866)
Q Consensus 1430 ~~~ 1432 (1866)
+..
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.53 E-value=8.6 Score=46.92 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=68.2
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHH----hhchhhHH
Q 000201 1123 LMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQLL 1197 (1866)
Q Consensus 1123 l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~----~~~~~~l~ 1197 (1866)
+.+.+...+. +.++........+++.....++..+-+.++..+.++++++.+.+|..-+..+++.+. ........
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~ 102 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE 102 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 3333333333 578888999999999888888666778899999999999999999999999998876 22223344
Q ss_pred hhHhhHHHHHHHhhcCCcHH
Q 000201 1198 SFMDELIPTIRTALCDSILE 1217 (1866)
Q Consensus 1198 ~~l~~ll~~l~~~L~d~~~~ 1217 (1866)
++++.++..+.+....+.+.
T Consensus 103 ~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 103 PFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 55566666666666555443
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=91.43 E-value=4.9 Score=47.42 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=98.9
Q ss_pred CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC---------hhhHHHHHHHhcc-------cCCCH
Q 000201 846 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK-------SDNSN 909 (1866)
Q Consensus 846 ~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~---------~~~l~~~L~~~L~-------~~~~~ 909 (1866)
+...+..+++-++|.++.++.|..+.+|..++.++..+...++... .+-+.+.+...+. .+++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 2223333333332 12223
Q ss_pred HHHHHHHHHHHHHHHHhC---h-h---HHHHHHHH-HHHHhcc----CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 910 VERSGAAQGLSEVLAALG---T-V---YFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g---~-~---~l~~ll~~-l~~~l~~----~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
..-..+..++-.++.... . . .+.+++.. ++..... +.+.++...+..+..+...+|-....|++.++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333455566655554321 1 1 23344433 5555433 248899999999999999999999999999999
Q ss_pred HHHhhccCCC
Q 000201 978 AILDGLADEN 987 (1866)
Q Consensus 978 ~ll~~l~d~~ 987 (1866)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.9 Score=48.24 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=109.1
Q ss_pred HHHHHHh-hcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC------CCchHHHHHHHHHHhc-
Q 000201 1489 GLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL------KPFLPQLQTTFIKCLQ- 1560 (1866)
Q Consensus 1489 ~L~~l~~-~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~------~~~lp~L~~~l~~~l~- 1560 (1866)
.+.-++. ..+...+..+..-++|+++.++.|. ...+|...+.+|..++.+++... ....+.+.+.+..++.
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~ 177 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY 177 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc
Confidence 3444444 5556678888899999999999985 88999999999999999876543 2234556667777776
Q ss_pred -------CCCHHHHHHHHHHHHHHHhc------cC---ChhhHHHH-HHHHhc-cC---ChhHHHHHHHHHHHHHHhcCc
Q 000201 1561 -------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAGK 1619 (1866)
Q Consensus 1561 -------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~~l~~-L~~~l~-~~---~~~vr~~~l~aL~~vi~~~~~ 1619 (1866)
+.+..+-..|..|+-.|... .+ ..+.++.+ ++..+. .. ...++...++.+..++...|.
T Consensus 178 LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 178 LPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc
Confidence 44567777888888887442 12 24445544 555543 23 388999999999999999988
Q ss_pred cccHHHHHHHHHHHHHhhcCC
Q 000201 1620 SVSSAVKIRVYSVLKDLVYHD 1640 (1866)
Q Consensus 1620 ~l~~~~~~~i~~~L~~~l~~~ 1640 (1866)
... .+.+.++..+.+.+.++
T Consensus 258 ~~~-~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 258 SSV-KHLQRIIPVLSQILENP 277 (282)
T ss_pred HHH-HHHHHHHHHHHHHhcCC
Confidence 666 78888888888776655
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.29 E-value=3.2 Score=54.35 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=104.9
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC---hhhhhh----hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 000201 1467 LLPIFLQGLISGSAELREQAALGLGELIEVTS---EQSLKE----FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1467 ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~---~~~l~~----~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~ 1539 (1866)
|+|..++.|.+...+.|....-..+.|...-+ .+-++. |..++..| +...+++-|..+.-.|..+++.
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~-----~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP-----SQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC-----cCCCCHHHHHHHHHHHHHHHcc
Confidence 68888888888888888877766666664331 111222 22222222 1335667888888888888876
Q ss_pred cCCCCCC-chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHh------ccCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 000201 1540 GGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQVSDAGIREAILTALK 1611 (1866)
Q Consensus 1540 ~~~~~~~-~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~ 1611 (1866)
.+..-+. +-+.++...+..++|+ .+-+|.=.+.|||.|.. ..+.-+.-...|...+.++-++||.+++-||+
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 5433222 3367888899999995 78999999999999942 23445556677888888889999999999999
Q ss_pred HHHHhcCc
Q 000201 1612 GVLKHAGK 1619 (1866)
Q Consensus 1612 ~vi~~~~~ 1619 (1866)
..+.....
T Consensus 668 tfl~~~~d 675 (1387)
T KOG1517|consen 668 TFLSNGSD 675 (1387)
T ss_pred HHhccccc
Confidence 99987543
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.19 E-value=6.6 Score=48.40 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC-------CcHHHHHHHHHHHHHHH
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-------NSAKRREGALLAFECLC 644 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~-------~~~~~r~~al~al~~L~ 644 (1866)
..-+..++...++. .+...|..|.+.|.. .-|.. .++|++...+.+. .|-..-.-.+.....|.
T Consensus 205 lQlYy~~It~a~~g-~~~~~r~eAL~sL~T---DsGL~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTG-SDEPLRQEALQSLET---DSGLQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHhhcc---CccHH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 34455555555554 445678888877653 22322 3445444444321 22222223344444455
Q ss_pred HHhCcCchhcHHhHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHhhcHhh--H-HhHHHHHHhhcCC--CCh
Q 000201 645 EKLGRLFEPYVIQMLPLLLVAFS----------DQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLED--KAW 709 (1866)
Q Consensus 645 ~~l~~~~~p~v~~llp~ll~~~~----------D~~~~VR~~a~~al~~i~~~l~~~~--v-~~llp~L~~~L~~--~~w 709 (1866)
.+..-.++||+.+++|.++.|+- |....+|+-|+..+..++..++... + ..+...+.+.+.| ..|
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 55555689999999999998863 4567899999999999999887632 2 5677777777765 469
Q ss_pred hhHHHHHHHHHHHHhh
Q 000201 710 RTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~ 725 (1866)
...+|++..|..+...
T Consensus 356 st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 356 STHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhHHHHHHHhhhh
Confidence 9999999999988764
|
|
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=86 Score=44.08 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=84.3
Q ss_pred HhhhhHHHHHH-hcCCCHhHHHHHHHHHHHHHhh--cC--CCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 854 IGLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRG--MG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 854 ~~~ll~~L~~~-l~d~~~~vR~~a~~aL~~l~~~--~g--~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
.+.++..+..+ ..+..|.+|..+.+.+..++-. ++ +....++-..+...+. +.+..+|..++.+|+.+..+--.
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhcccc
Confidence 34455555533 3356899999999988887753 22 1223344444444443 44456899999999888765332
Q ss_pred hHHHHHHHHHHHHh--ccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 929 VYFEHILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 929 ~~l~~ll~~l~~~l--~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
.............. .+.+.....++...++.+.-.+|..+--+++..+-.+-....++ .-++.++-+++..+-.
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHH
Confidence 21111111111111 12244556788899999999988765445555555444444444 5566666666555443
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.82 E-value=41 Score=39.84 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=129.1
Q ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHhhH----HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 657 QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 657 ~llp~ll~~~~D~-~~~VR~~a~~al~~i~~~l~~~~v----~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
.+-.-+-+|+.-. -..|-..|.+....|++.+++..+ ....|.++..+...+-++|-.-+.++....-..+..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 3444444454322 457999999999999999999875 45678888888888899999999998877766677888
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHH-HHHHHHHh--cccc----
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQ--TTFV---- 803 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr-~al~~L~~--~~~~---- 803 (1866)
..++.++..++..+.|+..++...+...+..+...+++..+ +.+--.++ ..| ..| .|+.-+.. ..+.
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii---~sp--~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII---TSP--SRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh---cCc--chhHHHHHHHHHhCCccccccc
Confidence 89999999999999999999999999999999988876532 33222222 223 344 34443332 0111
Q ss_pred -------ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 804 -------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 804 -------~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
...-.+.-..++..+..+++|.+.-|++.+.+.+-.-..
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 001123445678888899999999999998877766544
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=90.71 E-value=11 Score=49.89 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred CcchhhhHHHHHHHHHhhCCCcccC--CcchHHHHHHHH----hhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHH
Q 000201 1679 SWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLK----SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752 (1866)
Q Consensus 1679 ~~~~r~~~~~~L~~~l~~~p~~~~~--~~~~~~~~~~l~----~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~ 1752 (1866)
....+..+.+++..++...-..-.. ......+++++. .+....+...+...+.|+|.+-... ..
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i 479 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SI 479 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HH
Confidence 3345666778888777642111100 111234444444 4444556666788899998654321 23
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhcc
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 1824 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 1824 (1866)
..+.+++.+-...+..+|.+|+++++.++..+|..+++.+- .+|.. +..+..||.||- ..+++-
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~----~i~~n-~~e~~EvRiaA~---~~lm~t 543 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL----PIYLN-RAEPPEVRMAAV---LVLMET 543 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH----HHHcC-CCCChHHHHHHH---HHHHhc
Confidence 34444444445567899999999999999999887765433 23322 234566887654 444444
|
|
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.66 E-value=7.9 Score=48.58 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccchHH-HHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhc
Q 000201 1137 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1137 ~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1212 (1866)
..|..|..+||.++...+...+..+.. .+...|.++..-.|..++..+.+...........+..+.+.+.+...|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 468888889998888877666655554 5777888888888888888888876554322111112344444555555
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.6 Score=41.19 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=64.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 776 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 776 (1866)
+...++.+.|+...+|-.++..|..+..... ......+.++..+...++|+++-|--+|.++|..++....+ .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHH
Confidence 4455666777888888888888888887655 23334578888899999999999999999999999976643 455
Q ss_pred HHHHHhhCCC
Q 000201 777 PTLLMGLTDP 786 (1866)
Q Consensus 777 ~~L~~~l~d~ 786 (1866)
|.|++...|+
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 6666555444
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.4 Score=41.53 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.1
Q ss_pred chHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh
Q 000201 615 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 615 ~ii~~L~~~i~~---~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
+++..+...+.+ +++...|..++.+++.+.+..++...++..++.-.|...+..+ .+|..+.++...+...+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455555555555 6677788889999999999655555555556666665555544 89999999999999999998
Q ss_pred hHHhHHHHHHh
Q 000201 692 GVKLVLPSLLK 702 (1866)
Q Consensus 692 ~v~~llp~L~~ 702 (1866)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=89.81 E-value=13 Score=49.90 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCC------------cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEP------------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 892 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~------------~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~ 892 (1866)
.+..++..|.-.++.+....... .....|.+.+...+.......+...+..++++||.+..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 35567777777777776532111 22334555566666666666777888899999998753
Q ss_pred hhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHH
Q 000201 893 PDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~ 959 (1866)
+..++.+...+.+. .+..+|..|+++|..+.........+.+++.+.+ ...++++|.+|+.++-.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN--TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC--CCCChhHHHHHHHHHHh
Confidence 45666666665544 3456888888888755433322222333332222 13478899887765543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.1e+02 Score=42.97 Aligned_cols=376 Identities=14% Similarity=0.055 Sum_probs=174.1
Q ss_pred hhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcc-hhhhhHHHHHHHHhhhhhhhhhhhcCCccccC
Q 000201 1378 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKERRKKKGGPILIP 1456 (1866)
Q Consensus 1378 ~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~-~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~ 1456 (1866)
+++.......+...++.++..+...++.|...+..+|-.++...-.. ..-..+.... .+. . ..
T Consensus 795 ~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~-------~~~---~------~~ 858 (1364)
T KOG1823|consen 795 KSSDDSTVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLL-------ARK---R------HS 858 (1364)
T ss_pred cCccHhHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-------HHH---h------hc
Confidence 34455566667777778888887788888888888877776532111 1000000000 000 0 00
Q ss_pred CcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000201 1457 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536 (1866)
Q Consensus 1457 g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L 1536 (1866)
+-...+.+.-+....++..++..++ ..+-+...+..-+-++-.|-.+..-...++.++..+
T Consensus 859 -----------------gs~~~~~el~q~~~k~~t~lI~~~~--s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl 919 (1364)
T KOG1823|consen 859 -----------------GSPSTNFELCQDSFKGFTALIAQVG--SVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKAL 919 (1364)
T ss_pred -----------------CCCcccHHHHHHHHHHHHHHHHHhc--ceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 0001134455666777777776653 233333444444455555543444444555555555
Q ss_pred HHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000201 1537 IRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615 (1866)
Q Consensus 1537 ~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~ 1615 (1866)
+.+ + -..|-+..+...+.+.+... ..+.|..+...+-......++..+.+..+++.+..+...-|+...
T Consensus 920 ~~r-~-i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~~esg~esvr-------- 989 (1364)
T KOG1823|consen 920 VSR-K-IMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKLEKQMEFMVDNLLYEVESGRESVR-------- 989 (1364)
T ss_pred Hhc-c-ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhcccchhc--------
Confidence 443 1 12334566677777665544 677888888776555435567778888888877654322222222
Q ss_pred hcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHh
Q 000201 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 1695 (1866)
Q Consensus 1616 ~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~ 1695 (1866)
....-+.+.+....++...--+.++....|.++...+..+..-...+.+.=+.+.+..|........+...+.+...+..
T Consensus 990 ~~~all~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~ 1069 (1364)
T KOG1823|consen 990 FSPALLFEILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELFNLLERLLHEWVGVHKRHKRFILVGATGKAEE 1069 (1364)
T ss_pred ccHHHHHHHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 00000111111222222222344556667777777666553322222232223334456544443334434444444433
Q ss_pred hCCCcc------cCCcchHHHHHH-HHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHH
Q 000201 1696 HNPSAI------SMSPLFLSILDR-LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 1768 (1866)
Q Consensus 1696 ~~p~~~------~~~~~~~~~~~~-l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 1768 (1866)
..+... ..+.++..++.. ........+ -......++..+...... + .-.....+...+...+..+..+
T Consensus 1070 ~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~---~~~~~~~lfs~lt~~t~~-i-kk~~f~ki~~~v~~~~l~~~~~ 1144 (1364)
T KOG1823|consen 1070 SIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETE---EVLFDKVLFSWLTLVTEN-I-KKGGFSKIWSRVVGLLLMPHSW 1144 (1364)
T ss_pred HHhHHHHHHHhhccceeeeecccccccHHHHHHH---HHhhHHHHHHHHHHHHHH-H-HhccHHHHHHHHHHHHhCchHH
Confidence 322111 011111111000 000000000 011122222222111100 0 0012345666666666778889
Q ss_pred HHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhc
Q 000201 1769 VRRRALSALKSVAKANPSAIMVHVALFGPALAECLK 1804 (1866)
Q Consensus 1769 vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~ 1804 (1866)
||..+.+..+.+....... .-.+..+.|.+.....
T Consensus 1145 v~~s~~~lf~~l~a~~~~~-e~~~~~i~~~ll~~L~ 1179 (1364)
T KOG1823|consen 1145 VRLSRAQLFGFLFAISDVS-ELRLRTIIPLLLAHLD 1179 (1364)
T ss_pred HHHHHHHHHHHHHhcccHH-HHHHHHhHHHHHHhCC
Confidence 9999888888776644322 1123355555555543
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.70 E-value=15 Score=44.87 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH-hc-cCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHH----hcCc
Q 000201 1547 FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLS-AL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK----HAGK 1619 (1866)
Q Consensus 1547 ~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~-~~-~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~----~~~~ 1619 (1866)
.-+.+...+...+..+ |+........+++.-. .+ ..-.++++..+.+++++..+.+|...+.++..++. ....
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 4456666677766664 9999999999998663 33 34456788899999998888899999999999987 3333
Q ss_pred cccHHHHHHHHHHHHHhhcCCCHHHH----HHHHHHHHHHHhhcChhHHHH----------------HHH-HHHhccCCC
Q 000201 1620 SVSSAVKIRVYSVLKDLVYHDDDHVR----VSAASILGIMSQCMEDGQLAD----------------LLQ-ELLNLASSP 1678 (1866)
Q Consensus 1620 ~l~~~~~~~i~~~L~~~l~~~~~~vr----~~aa~~l~~L~~~~~~~~~~~----------------~l~-~ll~~~~~~ 1678 (1866)
.+..+..+.+...+.+...++-.... ..+.-++. +... ..+.... ++. .+.....
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~-~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~-- 174 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSW-KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA-- 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccc-cchhhhhhhhhhhhhccCCCcchhcCHHHHhccC--
Confidence 34456677777777776665532211 11111112 1000 0000000 111 1112211
Q ss_pred CcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhhhh
Q 000201 1679 SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQI 1741 (1866)
Q Consensus 1679 ~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~--~~~~r~~a~~alg~ll~~~~ 1741 (1866)
+.....+.+.++..++...+....... ...+-..++-.+.+. .+.+|+.|..++..+.....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 222345566678788877766553322 334555566666666 78999999999999887654
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.6 Score=45.27 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=97.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
.++-+....-.....+++.+...++.. ..+++..++..+.++-.+++...|..+-.++|+.++.+|++.+-.++|.-+
T Consensus 8 ~L~~~y~~aw~~vl~v~s~lf~~lg~~--~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl 85 (198)
T PF08161_consen 8 LLSYRYQHAWPEVLNVLSALFEKLGER--SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNL 85 (198)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCc
Confidence 333333344455556666666655542 356777788888888888888899999999999999999886656666332
Q ss_pred HhcccCCCHHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHH---hcc---C--ChhHH---hHHHHHHHHhhhhh--ch
Q 000201 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRN---CSH---Q--RASVR---DGYLTLFKYLPRSL--GV 966 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-~~ll~~l~~~---l~~---~--~~~vR---~~al~~l~~L~~~~--g~ 966 (1866)
+. .+.....|.-..--|.+-+....-.++ +.++|..... ..+ . ..+.| .-..+.|.-++..+ +.
T Consensus 86 ~~--~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~ 163 (198)
T PF08161_consen 86 DN--ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPT 163 (198)
T ss_pred cC--CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcc
Confidence 21 111111233323223222222122222 3444433221 111 1 11122 22345666666655 34
Q ss_pred hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 967 ~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
++...++.+.+.+.+.+.+. +++|...+++++.+
T Consensus 164 D~~~~F~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 164 DLAESFPSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred cHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 55445566666677777664 77888887777654
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.58 E-value=70 Score=40.64 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHhhhc-CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhh
Q 000201 1711 LDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 1789 (1866)
Q Consensus 1711 ~~~l~~~~~-~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~ 1789 (1866)
.|.++..+. ++.|.+|.+|+.++|+++..... ..++.-.-+...+.|.+.+|||.|+..+.-+.-...--++
T Consensus 935 lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-------~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK 1007 (1128)
T COG5098 935 LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-------TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK 1007 (1128)
T ss_pred HHHHHHHHhhCCCcceeccceeeccccceehhh-------hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec
Confidence 344444443 67788888888888888776542 3345555566777788888888888888766654432233
Q ss_pred hhHhhHHHHHHhhhccCcchhhhhHHHHH
Q 000201 1790 VHVALFGPALAECLKDGSTPVRLAAERCA 1818 (1866)
Q Consensus 1790 ~~l~~l~p~l~~~~~~~~~~vk~aae~a~ 1818 (1866)
.+ +|-|..+..|++..++.-|+.-|
T Consensus 1008 Gq----lg~ma~~L~deda~Isdmar~ff 1032 (1128)
T COG5098 1008 GQ----LGKMALLLTDEDAEISDMARHFF 1032 (1128)
T ss_pred cc----hhhhHhhccCCcchHHHHHHHHH
Confidence 22 44555666666666655555333
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=89.42 E-value=4.7 Score=48.84 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC-----CC-cHHHHHHHHHHHHHHH
Q 000201 571 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-----RN-SAKRREGALLAFECLC 644 (1866)
Q Consensus 571 ~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~-----~~-~~~~r~~al~al~~L~ 644 (1866)
....++..+.+.+.. .+...|..|...|. ...|.. .++|++...+.+ -+ +...-...+.....|.
T Consensus 175 Elq~yf~~It~a~~~-~~~~~r~~aL~sL~---tD~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 175 ELQLYFEEITEALVG-SNEEKRREALQSLR---TDPGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHhc---cCCCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 344555555665554 33456666555543 333333 345554444322 11 3333444555566666
Q ss_pred HHhCcCchhcHHhHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHHhhcHh--hH-HhHHHHHHhhcCCC--Ch
Q 000201 645 EKLGRLFEPYVIQMLPLLLVAF----------SDQVVAVREAAECAARAMMSQLSAQ--GV-KLVLPSLLKGLEDK--AW 709 (1866)
Q Consensus 645 ~~l~~~~~p~v~~llp~ll~~~----------~D~~~~VR~~a~~al~~i~~~l~~~--~v-~~llp~L~~~L~~~--~w 709 (1866)
....-.++||+.+++|.++.|+ .+....+|+-|+..+..++..++.. .+ ..+...+.+.+.++ ..
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 6666678999999999999887 2345689999999999999988764 23 66777777777654 35
Q ss_pred hhHHHHHHHHHHHH
Q 000201 710 RTKQSSVQLLGAMA 723 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~ 723 (1866)
.+.+||+..|..+.
T Consensus 326 ~~~YGAi~GL~~lG 339 (343)
T cd08050 326 TTHYGAIVGLSALG 339 (343)
T ss_pred chhhHHHHHHHHhC
Confidence 66999999888775
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=89.16 E-value=83 Score=40.89 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhHhhhc---cchhcHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC
Q 000201 1325 MDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 1400 (1866)
Q Consensus 1325 ~~vr~~a~~~l~~l~~~---~~~~~~~~ll~~L~~~l~~~~~-~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~ 1400 (1866)
...+..+...+..++.. ...+.+-.-+|.|++.+...+. .+-.-++.++..+.......-.-.-...++.|+..+.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 34455555555555441 1123456667777777765544 6777788888888743322211111234555555554
Q ss_pred CCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCH
Q 000201 1401 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 1480 (1866)
Q Consensus 1401 d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~ 1480 (1866)
+ .+...+.|...|..++.....+.++..- +.+..+++.+...+.....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~-------------------------------~~l~~il~~La~~fs~~~~ 198 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDS-------------------------------QLLHSILPSLARDFSSFHG 198 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhH-------------------------------HHHHHHHHHHHHHHHhhcc
Confidence 4 4556677777777776655433322111 1222333333333333344
Q ss_pred HHHHHHHHHHHHHHhhcCh-----hhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 000201 1481 ELREQAALGLGELIEVTSE-----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544 (1866)
Q Consensus 1481 ~~r~~a~~~L~~l~~~~~~-----~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~ 1544 (1866)
..|-..+..++.+....+. ..-..+...+...+..+++.+..+.-|..++...+.++...|..+
T Consensus 199 ~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 199 EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 5566777777777766521 112335566777778888888888999999999999999887653
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.05 E-value=6.4 Score=46.22 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=77.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 1548 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l 1548 (1866)
+.++..+.++++++|..|+..||..+..-+...-.-.=......|+..+....+..+|..||.+++.+++..+.....|+
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444788999999999999999999876432211111224566778887656778999999999999997665444443
Q ss_pred H-HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000201 1549 P-QLQTTFIKCLQDS--TRTVRSSAALALGKLSA 1579 (1866)
Q Consensus 1549 p-~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~ 1579 (1866)
+ .=...+..+++++ +...+..+...++.+..
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 2 1144566777774 66788888888888854
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=89.00 E-value=10 Score=46.91 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=97.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhcCCCCC
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRKGGIALK 1545 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~al~~L~~L~~~~~~~~~ 1545 (1866)
.-+.+.++.+++..|..|..+|.. ..+-..+-||+..++ .....-. .+-..-...+.....|+..-..++.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fI---ae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFI---AEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHH---hhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 334455666788888888777664 222233444433332 2111110 1223344455555566666567789
Q ss_pred CchHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhc-cCC---h-hhHHHHHHHHhccC--ChhHHHHHHH
Q 000201 1546 PFLPQLQTTFIKCLQ----------DSTRTVRSSAALALGKLSAL-STR---V-DPLVGDLLSSLQVS--DAGIREAILT 1608 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~----------d~~~~vR~~Aa~aLg~L~~~-~~~---~-~~~l~~L~~~l~~~--~~~vr~~~l~ 1608 (1866)
||+.+|+|.++.|+- |.+..+|.-|+..++.++.- ... + ..++..+.+.+.+. .....+.++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 999999999998862 33678999999999988542 111 1 22344455555543 4677899998
Q ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHhhcCC
Q 000201 1609 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 1640 (1866)
Q Consensus 1609 aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~ 1640 (1866)
.|.++....-..+.-+.+...+..+...+...
T Consensus 364 gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 364 GLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 88887765443333344555555555544443
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.89 E-value=63 Score=39.16 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=55.0
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh--hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc--c
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~--~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~--~ 769 (1866)
+.++.-+++.|+-++...-...+.+|..+.--.. ..+.. ..++..+.++..-.|++.|++...-+-.+.-.-+ +
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~--~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ--NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh--ccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 4455555666655554444444444443332211 12222 3778888888888999999999888877764332 2
Q ss_pred hhH-HhHHHHHHHhhCCCC
Q 000201 770 PEI-ASLVPTLLMGLTDPN 787 (1866)
Q Consensus 770 ~~i-~~lv~~L~~~l~d~~ 787 (1866)
.-+ ..++|.+...+.+.+
T Consensus 381 KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHhhccchHHHHHHhCCcc
Confidence 223 467888877776654
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.72 E-value=86 Score=40.52 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcChhh--------H--HHhHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTPKT--------L--KEIMPVLMNTLIS--SLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p~~--------l--~~~l~~l~~~L~~--~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
+.....+|..-+.|+..+-.+.+..+.. . ...+...+..+.. ..+++++.+...-...+.+-..-...
T Consensus 447 ~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~ 526 (980)
T KOG2021|consen 447 MNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST 526 (980)
T ss_pred hcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999888887654321 1 1122233333332 12344555554444444432222221
Q ss_pred --ccccchHHHHh--cccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhh
Q 000201 1156 --RVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1211 (1866)
Q Consensus 1156 --~~l~~llp~L~--~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1211 (1866)
...|.++..+. .++.+.+..||..+...+...++... ..+-+|.+.++..+...|
T Consensus 527 esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 527 ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLVPFIEEILNKIQDLL 585 (980)
T ss_pred chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 23455555543 36777889999999988888877654 456678888888887776
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.7 Score=40.03 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=62.1
Q ss_pred HHHHHHHhcccC---CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhc-hhh
Q 000201 895 LVSWLLDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQF 968 (1866)
Q Consensus 895 l~~~L~~~L~~~---~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f 968 (1866)
++..+-+.+.+. .+...|..+..+++.+++..| .+.....|++...+++. .+++|..++.+|..+...+. +++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHH
Confidence 344444444332 355678889999999998655 56777778777777653 77899999999999998886 466
Q ss_pred HhHHHHHHHHHHhh
Q 000201 969 QNYLQQVLPAILDG 982 (1866)
Q Consensus 969 ~~~l~~il~~ll~~ 982 (1866)
.|.+++++-.+++.
T Consensus 91 ~~ll~~~~~~i~~~ 104 (107)
T smart00802 91 GPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776666554
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=87.96 E-value=27 Score=43.62 Aligned_cols=232 Identities=17% Similarity=0.200 Sum_probs=125.4
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC--h-
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH-VRVSAASILGIMSQCME--D- 1661 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~-vr~~aa~~l~~L~~~~~--~- 1661 (1866)
.++..|+..++++|+.-|..+...+..+..+.... -.-.+..+...+.+.+.+.+.- -.....+++|.+..... -
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 56677777777777777777777777666654332 1234455555555544433211 12233455555554322 1
Q ss_pred hHHHHHHHH-HHhccCCCCcch-hhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhh
Q 000201 1662 GQLADLLQE-LLNLASSPSWAA-RHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1662 ~~~~~~l~~-ll~~~~~~~~~~-r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
++...++.. ++.......... ......++..++...|. +...++..+.++.=-.++.---.-+.=++.++..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~------l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS------LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG------GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Confidence 223334433 444443333322 12234456666666553 4556667777665444443333444445555554
Q ss_pred hhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--HHhhCcchhhhhHhhHHHHHHhhhcc-CcchhhhhHHH
Q 000201 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS--VAKANPSAIMVHVALFGPALAECLKD-GSTPVRLAAER 1816 (1866)
Q Consensus 1740 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~--~a~~~~~~~~~~l~~l~p~l~~~~~~-~~~~vk~aae~ 1816 (1866)
.... +..+...+++..+..++++++..|-..|+...+. +...-.+.....++.+.|+|++..+. =|..||..|.+
T Consensus 286 ~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 286 LPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4321 1234556788888899999999998888865441 11110011122356667777765554 38899999999
Q ss_pred HHHHhhcccc
Q 000201 1817 CAVHAFQLTR 1826 (1866)
Q Consensus 1817 a~~~l~~~~~ 1826 (1866)
++-.+.++-.
T Consensus 364 vl~~l~~~d~ 373 (409)
T PF01603_consen 364 VLKILMEMDP 373 (409)
T ss_dssp HHHHHHTTSH
T ss_pred HHHHHHHhCH
Confidence 9999988743
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=87.88 E-value=11 Score=46.91 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhcCCCCCCchHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 1555 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~--~L~~~~~~~~~~~lp~L~~~l 1555 (1866)
+++.-...-..-+..++...++..+......++.-+.+.+... +.+|-..|+..+. .++..+. .+-..+.|.+
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~----~~~~~i~p~i 341 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLIS----QNSRVILPII 341 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHH----CTHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHH----hChHHHHHHH
Confidence 3444444556778888888877888888888887788887763 7778777776654 2233222 2334455555
Q ss_pred HHHhcC----C-CHHHHHHHHHHHHHHHhccC
Q 000201 1556 IKCLQD----S-TRTVRSSAALALGKLSALST 1582 (1866)
Q Consensus 1556 ~~~l~d----~-~~~vR~~Aa~aLg~L~~~~~ 1582 (1866)
...+.. . +..||..|..++..+..+.+
T Consensus 342 ~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 342 FPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 555433 2 78999999999998876544
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=37 Score=39.09 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=60.3
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+++++.+.+|.||.+|+..+-.+... +-. +-...++.+.+.+.++.. .+.+..++++...........++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999888777654 211 114567777777777655 44444455442221111122233344
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 455555566655555666777777765
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.66 E-value=5.3 Score=47.55 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=91.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhcccc---ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhh
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1202 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ 1202 (1866)
-++..+++.+..+|..|...+.++....+... +..+++.+.....|.+..+|......+-.++....++.+.++..-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 34556788999999999999999987744432 344555566667788999999999998887777777778889999
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1203 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1203 ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
+++.+..++....+++|..+...+..+....++....
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 9999999999999999999999999888877765443
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.1e+02 Score=39.26 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc-----
Q 000201 630 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----- 704 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L----- 704 (1866)
...-+.++..|..+.. .|..-...+..++..|....+-. ...+.++.++..+++.-.++. .+..+...|
T Consensus 191 ~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~---~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 191 EDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS---AIRTLCDILRSPDP 264 (464)
T ss_pred HHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH---HHHHHHHHHcccCc
Confidence 3334556666666654 22222334445555555443322 777888998888886443332 233333333
Q ss_pred -CCCChhhHHHHHHHHHHHHhhChhhH--Hhhhcc--hhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 705 -EDKAWRTKQSSVQLLGAMAYCAPQQL--SQCLPK--IVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 705 -~~~~w~~r~~a~~~L~~l~~~~~~~~--~~~l~~--iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
..++.++-.||+..++.+.-+.+++- .-.+.. ++|.+...++-.++.|-......+..+.
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 12456777899999998887764331 222334 8888888888777776666665555554
|
|
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.3 Score=47.15 Aligned_cols=89 Identities=26% Similarity=0.350 Sum_probs=74.5
Q ss_pred cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hcC
Q 000201 1465 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---KGG 1541 (1866)
Q Consensus 1465 ~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~---~~~ 1541 (1866)
...+|.|.+|+...+-.-|-.|-.++.++.... ++.+-|.+++++.||-+.+..+ +.++....|.+|..+.. .+|
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~-g~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAG-GEKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc-ccccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhccccc
Confidence 457999999998777667778888899998877 5788899999999999999875 78899999999887766 457
Q ss_pred CCCCCchHHHHHHH
Q 000201 1542 IALKPFLPQLQTTF 1555 (1866)
Q Consensus 1542 ~~~~~~lp~L~~~l 1555 (1866)
..+.||.-|+++.+
T Consensus 191 ~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 191 AALVPFYRQLLPVL 204 (262)
T ss_pred hhhhhHHHHhhhhh
Confidence 78899999998865
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.33 E-value=84 Score=37.83 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcc--cCCcchHHHHHHHHh-hhcCCChhHHHHHHHHhHHHHhh
Q 000201 1667 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI--SMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1667 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~--~~~~~~~~~~~~l~~-~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
+++.++.|+.+.+-......+++++.+.+....-+ ....+...+++.+.+ .-.+++....-++..|+..+..-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 66777788887776656666777777766543222 233455666666655 55566777777778888776543
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=84.94 E-value=66 Score=36.74 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=103.9
Q ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 659 LPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 659 lp~ll~-~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+|.++. .-+..++.+......++..++..-. .....++..+....+.+.-..+.-+..++..+....+..+ ..+..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~ 79 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPL 79 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence 344443 4455677777777777777765433 3345555555555555555556666666666665544332 111111
Q ss_pred hHH-Hhh---hc--cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHH-HHHHHHHhccccccCC-c
Q 000201 738 VPK-LTE---VL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFVNTVD-A 808 (1866)
Q Consensus 738 v~~-l~~---~L--~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr-~al~~L~~~~~~~~~~-~ 808 (1866)
+.. ..+ .. .+...++..+...++..++....+ ...++++.+...+ .+.++.++ .+++.+...--.+.++ .
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence 111 111 11 233345556666788888876655 5577888888888 44444444 3555444311000011 1
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 869 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~ 869 (1866)
+.+..+.|.+ -.+..+.+-+..+..+..+...--+.+....+...++..+-+.....+
T Consensus 159 s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 159 SAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 2233333322 223445555555555554444222334444556667777777766555
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=84.93 E-value=31 Score=42.30 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-hhH-HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhh
Q 000201 1640 DDDHVRVSAASILGIMSQCME-DGQ-LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS 1717 (1866)
Q Consensus 1640 ~~~~vr~~aa~~l~~L~~~~~-~~~-~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~ 1717 (1866)
..+..|..|-+++..+..... .+. -..+++.+++-....+...|..++.++..+.-..|+-+...+....+...+.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~-- 157 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI-- 157 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH--
Confidence 356678888888888876622 112 1234555555444455556777788899998888887655444444444443
Q ss_pred hcCCChhHHHHHHHHhHHHHhhhhhcC-CCChhhHHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCcchhh--
Q 000201 1718 LKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAIM-- 1789 (1866)
Q Consensus 1718 ~~~~~~~~r~~a~~alg~ll~~~~~~~-~~~~~~~~~~l~~l~~~----l~~~~~-~vR~~a~~~l~~~a~~~~~~~~-- 1789 (1866)
+....+....+.++=+++.+..... .-..-.+..++.++... ..++.. +.-+.+..++.++-+.-++.+.
T Consensus 158 --d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 158 --DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred --hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 4333455555555555555433211 00112445566666655 222222 4566677888888887766541
Q ss_pred -hhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhccccc
Q 000201 1790 -VHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 1827 (1866)
Q Consensus 1790 -~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~ 1827 (1866)
+.. .-+..+....+.++..+|.+....+..+|++...
T Consensus 236 ~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 236 MNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred cCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 111 3467788888889999999999999999999865
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.75 E-value=1e+02 Score=37.26 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=54.1
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc-----cCCChHHHHHHHHHHHHHHhhcc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-----TDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L-----~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
+.++..+...+.+.+-+....+..++|++++....-+.-.-.+++..++.++ -|.+.+++.+++.||..++--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4477778888888888999999999999998754322111125555555554 35678889999999999875444
Q ss_pred c
Q 000201 769 N 769 (1866)
Q Consensus 769 ~ 769 (1866)
|
T Consensus 394 n 394 (604)
T KOG4500|consen 394 N 394 (604)
T ss_pred c
Confidence 4
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.60 E-value=33 Score=48.17 Aligned_cols=93 Identities=24% Similarity=0.245 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHH----HHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc
Q 000201 909 NVERSGAAQGLSEVLAALGTVYFEHILPDI----IRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 984 (1866)
Q Consensus 909 ~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l----~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~ 984 (1866)
...+..+.+.+++++.....+....++|.. .+...+.+..||......+..+...++....||+..++|+.+-+..
T Consensus 55 ~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~ 134 (1312)
T KOG0803|consen 55 ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQF 134 (1312)
T ss_pred hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheec
Confidence 346778888888888877766555544333 2345678999999999999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHH
Q 000201 985 DENESVRDAALGAGHVL 1001 (1866)
Q Consensus 985 d~~~~VR~~a~~al~~i 1001 (1866)
|.+..|-.+|..+....
T Consensus 135 d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 135 DLDYPVSEAAKASFKDG 151 (1312)
T ss_pred ccchHHHHHHHHHHHhh
Confidence 88877777766665543
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=84.51 E-value=1.4 Score=34.44 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.2
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
..+|.|+.++.+.+++|+..|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999886
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.39 E-value=15 Score=43.93 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=96.3
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 1429 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l 1429 (1866)
-+..|+..+++-+..+|..|.+.+..+....+.....+...+++.+..++.|.+..||...+..+..++-...++.+.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s-- 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS-- 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc--
Confidence 455667778888999999999999999888777777788899999999999999999999988887765433222111
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000201 1430 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 1509 (1866)
Q Consensus 1430 ~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i 1509 (1866)
..+.-++|.+.-++....+++|..++..+.-++..++ +.+..+...+
T Consensus 137 --------------------------------p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~-p~~~~~~~~i 183 (393)
T KOG2149|consen 137 --------------------------------PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP-DTFSRYASKI 183 (393)
T ss_pred --------------------------------chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC-hHHHHHHHHH
Confidence 1222345555566667789999999999999998884 3444444445
Q ss_pred hHHHHHHh
Q 000201 1510 TGPLIRII 1517 (1866)
Q Consensus 1510 ~~~Li~~l 1517 (1866)
.+-....+
T Consensus 184 l~n~~d~i 191 (393)
T KOG2149|consen 184 LENFKDVI 191 (393)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=84.39 E-value=1e+02 Score=37.07 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=37.3
Q ss_pred CchhHHHHHHHHHHHHHhhccchh---hhhH----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1361 NQASIRRSSAYLIGYFYKNSKLYL---VDEA----PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1361 ~~~~vR~~a~~~l~~l~~~~~~~~---~~~~----~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
.+..+.+..+..++.++...+... ..+. +.....++.+++.+|..+...|...|+.++...+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 345666777777777665443111 1111 12556677788888999999999999999876554
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=84.32 E-value=7.3 Score=37.98 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=60.7
Q ss_pred chHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh
Q 000201 615 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~---~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
+++..+.+.+.+.+ +...|..++.+++.+.+..|.....+..++.-.|...+. .++.|..|.++...+...+.+.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 34555555554433 666788899999999997765555555566556665665 5569999999999999999988
Q ss_pred hHHhHHHHHH
Q 000201 692 GVKLVLPSLL 701 (1866)
Q Consensus 692 ~v~~llp~L~ 701 (1866)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766665444
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.73 E-value=29 Score=48.76 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcccc----ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhh
Q 000201 1120 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1195 (1866)
Q Consensus 1120 l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~----l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~ 1195 (1866)
+..-+..+++.+...++.+|.-|...|++++.....+. +|.....+.+...|.+..+|...-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 44446667777888999999999999999998765443 44444455566778899999999999998887775 46
Q ss_pred HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 000201 1196 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1228 (1866)
Q Consensus 1196 l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~ 1228 (1866)
+.+|+..+++...-..+|.+..|-.+|...+..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999888889988888777665543
|
|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=82.81 E-value=7 Score=40.95 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh----------------hHHhhhc
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ----------------QLSQCLP 735 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~----------------~~~~~l~ 735 (1866)
.||...+.++..++...-+..++.+++.+++.+.+ +.......+.+|..+.+...+ .+..+.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 46677777777777766666667777777777766 355555566666555543211 1334456
Q ss_pred chhHHHhhhccCCC----hHHHHHHHHHHHHHHhhccchhH--HhHHHHHHHhhCCCC
Q 000201 736 KIVPKLTEVLTDTH----PKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPN 787 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~----~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~L~~~l~d~~ 787 (1866)
.++..+.++++... .++...+.++++.+..++.-..+ ..+++.+.+.+.+|+
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH
Confidence 67777777666443 78888899999988886654443 357888888876654
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=82.44 E-value=1.7e+02 Score=38.47 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHH-------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc--cccchHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMP-------VLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPI 1164 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~-------~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~ 1164 (1866)
+..+-++++.+|..+....+ ....++. ..++.++..+...+..+-.+++.+|..+....... +-.+.+|-
T Consensus 532 n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~ 610 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPD 610 (717)
T ss_pred chHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHH
Confidence 34455666666666654322 1122222 22456667778788888888888888776543221 22345555
Q ss_pred HhcccCCC------CccchhhHHHHHHHHHHhhch--hhHH--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1165 LSRGLKDP------SASRRQGVCIGLSEVMASAGK--SQLL--SFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1165 L~~~L~d~------~~~vr~~a~~~L~~li~~~~~--~~l~--~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
|...|.+. ++++-..+|..|.+++...-. .++. .-++.++-+... ..++.+-++|...+..|
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s---~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS---QHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc---cCCHHHHHHHHHHHHHH
Confidence 55555433 345677888899888743211 1110 112333322222 44556666666666555
|
|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=80.91 E-value=25 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHH
Q 000201 714 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 778 (1866)
Q Consensus 714 ~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 778 (1866)
..+.+++.+....+..-...+.+++..+.++-++.+...|..+-.+++...+.++...+-.++|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPL 83 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPL 83 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCC
Confidence 34556666666655555556667777788888888888999999999999988886655555553
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.08 E-value=1.3e+02 Score=35.23 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh----hcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK----KYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~----~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
++.++.-+..+++-+.|..+-+++..+-.--|.+..+ ..+..+.+..+. +..+++..-+.++.++..|+-..++.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 3445555555455567766667776666555655443 223334444332 34445555555555555554332211
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
-.-. +-.-++++...-|+..+. .-.+++.+|+.+.+++.....+-
T Consensus 365 sa~~------------------ie~G~a~~avqAmkahP~-----------------~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKA------------------IEAGAADLAVQAMKAHPV-----------------AAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHH------------------HhcchHHHHHHHHHhCcH-----------------HHHHHHHHHHHHHHHHHhhhhcc
Confidence 0000 000112222222222221 23566777888887776654443
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
...+..=+..++..-...|+.++.+|-.+|..++-..
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 3334444556666667788999999999999888543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1866 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-27 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-23 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-23 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-125
Identities = 101/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 564 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 623
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 624 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 683
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 684 MMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 742
+++ ++ +K +LP L + E W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 743 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 802
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 862
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 863 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 921
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 922 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 976
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 977 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1028
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 1e-26
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 946
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 947 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1007 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1065
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1066 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1122
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1123 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1182
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1183 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 1239
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 1240 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 1283
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 7e-15
Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 40/256 (15%)
Query: 1111 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1168
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1169 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1227
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1228 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAVLPHILPKLVHL 1284
++ + AI ++P L +A+ + Q L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILA------------------------ 156
Query: 1285 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 1344
A A+ + A + + ++P L M D +V++ A A T +D
Sbjct: 157 --------AFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208
Query: 1345 EGVESLVSELLKGVGD 1360
+ +E + L++ + D
Sbjct: 209 KDIERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-10
Identities = 53/345 (15%), Positives = 117/345 (33%), Gaps = 21/345 (6%)
Query: 1123 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1182
L+ + ++ + E + VA L +V + + +++P L+ + + + + + +
Sbjct: 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAIL 155
Query: 1183 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 1242
M A K Q+ M ELIP + + D+ EV+ +A A + ++ + I+ +
Sbjct: 156 AAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI 215
Query: 1243 PTLLHALEDDQTSDTALDGLKQILSVR-----TTAVLPHILPKLVHLPLSAF-------- 1289
P+L+ + D + L V T +++ +L + ++ +
Sbjct: 216 PSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII 275
Query: 1290 -NAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGV 1347
N L +V P LG +LP L S D + + + A + TL
Sbjct: 276 DNMCKLVEDPQVIAP----FLGKLLPGLKSNFATIADPEAREVTLRALK--TLRRVGNVG 329
Query: 1348 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 1407
E L GD +++ + L +V+ + + LI
Sbjct: 330 EDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWF 389
Query: 1408 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 1452
++ + + + ++ G
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE 434
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 5e-10
Identities = 55/447 (12%), Positives = 139/447 (31%), Gaps = 82/447 (18%)
Query: 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTAL 1259
+++ + L + + R ++ ++ + L ++D +T+ A+
Sbjct: 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAM 73
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
+ I + L E ++ ++PA+ +
Sbjct: 74 QAVAHIAN-----------------------QSNLSPSVEP-------YIVQLVPAICTN 103
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYK 1378
G+ D ++QS+A E ++ ++ +++L+ L + + + +
Sbjct: 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163
Query: 1379 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP-KEVQPSYIKVIRDAI 1437
+K + P +I L + D+ AAA A+++ +V K+++ +I + I
Sbjct: 164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER-FIPSLIQCI 222
Query: 1438 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 1497
+ + G P L ++P+ +GL ++ ++A+
Sbjct: 223 ADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV--------- 273
Query: 1498 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 1557
I + +++ D + PFL +L
Sbjct: 274 -----------IIDNMCKLVEDP---------------------QVIAPFLGKLLPGLKS 301
Query: 1558 CLQDSTR-TVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 1616
R AL L + + ++S AG L + +LK
Sbjct: 302 NFATIADPEAREVTLRALKTLRRVGNVGEDDAIP-----ELSHAGDVSTTLQVVNELLKD 356
Query: 1617 AGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
+ + + + + + +
Sbjct: 357 ETVAPRFKIVVEYIAAIGADLIDERII 383
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-07
Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 13/219 (5%)
Query: 1386 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445
++ ++ L LS + + ++ + E + +DK+
Sbjct: 10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKT 68
Query: 1446 RKKKGGPILIPGFC--LPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
+ L +++P L+P + E++ A+ L ++ +
Sbjct: 69 AANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559
++K ++P L I + WQ K AIL+ S ++ + +P+L + +
Sbjct: 129 VAIK-ALLP---HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM 184
Query: 1560 QDSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQ 1596
D+ + V+++A A+ K + ++ + L+ +
Sbjct: 185 WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 35/240 (14%)
Query: 1579 ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 1638
+ S + ++ +L L V+ A R I + + L G + V + L +
Sbjct: 7 SDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLN--GNIIEHDVPEHFFGELAKGI- 63
Query: 1639 HDDDHVRVSAASILGIMSQCMEDGQ-----LADLLQELLNLASSPSW----AARHGSVLV 1689
D +A + ++ + L+ + A + A + +
Sbjct: 64 -KDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI 122
Query: 1690 FATFLRHNPSAISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANT 1748
NP AI +L L +++ + K+ + A A + + +
Sbjct: 123 VNAV---NPVAIKA------LLPHLTNAIVETNKWQEKIAILAAFSAM----VDAAKDQV 169
Query: 1749 TV-VVDILASVVSALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPALAECLKD 1805
+ + +++ + + D EV+ A +A+ + N + F P+L +C+ D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-----IERFIPSLIQCIAD 224
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 372 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 429
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 430 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 487
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 488 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 540
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 541 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 599
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 600 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 655
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 656 IQMLPLLLVAFSDQVVAVREAAECAARAM 684
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 3e-93
Identities = 173/1167 (14%), Positives = 391/1167 (33%), Gaps = 121/1167 (10%)
Query: 527 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 586
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 587 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 639
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 640 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 699
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 700 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 758
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 759 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 814
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 874
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 875 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 992
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 993 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1049 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1109 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1166
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1167 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1226
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1227 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-SVRTTAVLPHILPKLV 1282
+TL K S+ + I+ L+ + AL + ++ T L+
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1283 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 1342
+ + + + + + + + A
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC-------------------------- 810
Query: 1343 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 1402
+ ++V + ++ V +++++ L+ + L + S ++ S
Sbjct: 811 -PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL-SGQLELKSVILEAFSSP 868
Query: 1403 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI---PGFC 1459
+AA AL + E P + I++ ++ +I
Sbjct: 869 SEEVKSAASYALGSISVGNLPEYLP----FVLQEITSQPKRQYLLLHSLKEIISSASVVG 924
Query: 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 1519
L ++ + + L+ R A LG+L + E L +
Sbjct: 925 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG------- 977
Query: 1520 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL-- 1577
+S++++ + I + P L F+K L+D VR A +
Sbjct: 978 --SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAH 1035
Query: 1578 ---SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 1634
S + +D ++ L + +V IRE + G KH +V + IR +
Sbjct: 1036 NKPSLIRDLLDTVLPHLYNETKVRKELIREVEM----GPFKH---TVDDGLDIRKAAFEC 1088
Query: 1635 DLVYHDDDHVRVSAASILGIMSQCMED 1661
D R+ L + ++D
Sbjct: 1089 MYTLLDSCLDRLDIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 5e-74
Identities = 170/1132 (15%), Positives = 371/1132 (32%), Gaps = 90/1132 (7%)
Query: 718 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 778 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 835
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 836 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 947
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 948 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1006
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1007 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1066
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1067 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1126
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1127 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1181
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1182 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 1241
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP------ 552
Query: 1242 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 1301
D +S A +K + T + + + + +G +
Sbjct: 553 --------LDQPSSFDATPYIKDLF----TCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 1302 GPGLNFHLGTILPALLSAMGDDDMDVQSLA--KEAAETVTLVIDEEGVESLVSELLKGVG 1359
G L L L L + ++ + ++ A + + + V L +
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 1360 DNQASIRRSSAYLIGYFYKNSKLYLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVV 1418
NQ +++ + + KN L ++ L L+S+SD A L+ +
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 1419 ASVPK-------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 1471
P + I ++R + +++ G + L +
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 1472 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 1531
+A +Q+ + + + + KE + + + R ++ L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 1532 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 1591
+L + + +L++ ++ + V+S+A+ ALG +S +
Sbjct: 841 SLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYL---PF 894
Query: 1592 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 1651
+ S + +L +LK ++ A ++++L ++ R A
Sbjct: 895 VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 954
Query: 1652 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 1711
LG ++ + L L L S S AR V + +P I PL + +
Sbjct: 955 LGKLTLIDPETLLPRLKGYL----ISGSSYARSSVVTAVKFTISDHPQPI--DPLLKNCI 1008
Query: 1712 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH-------- 1763
+L+D +R + ++ ++ +L + +
Sbjct: 1009 GDFLKTLEDPDLNVRRVALVTFNSAAHNK---PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Query: 1764 ----------DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 1805
DD ++R+ A + ++ + + + F + + LKD
Sbjct: 1066 VEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLKD 1115
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 199 bits (505), Expect = 2e-51
Identities = 162/1210 (13%), Positives = 372/1210 (30%), Gaps = 151/1210 (12%)
Query: 370 SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 428
S L + ++ S+ + R A L T L + S + + ++ + V
Sbjct: 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV---- 64
Query: 429 LGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN 488
+ L ++ + I+ L + + +R +I + +
Sbjct: 65 --QNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPAS 121
Query: 489 V-----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL 543
+ + L + +E + E + I L++ +++ LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 544 DVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGV 602
L +P AV++ L L+ S + L+ LL +L K+D R +A +
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241
Query: 603 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 662
+ G + L + + + RE + AFE + + P+V ++ +
Sbjct: 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINIC 301
Query: 663 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 722
L + + + AM + +D +W+ ++++ + L A+
Sbjct: 302 LKYLTYDPNYNYDDEDEDENAMDA-DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360
Query: 723 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-------------- 768
+ L + + P L + V++ A + +
Sbjct: 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420
Query: 769 --------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIV 818
++ ++V L + + + T+ +L + + +LVP +
Sbjct: 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGI 480
Query: 819 HRGLRERSAETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 877
L ++S+ + K A + P+ P++ L+P V + DP ++ S A
Sbjct: 481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEAL 540
Query: 878 RAIGSL---IRGMGEENFPDLVSWL-------LDALKSDNSNVE-RSGAAQGLSEVLAAL 926
L IR + + + D ++ + LK+ + + E + A + +++ L
Sbjct: 541 LVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600
Query: 927 GTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 984
G + I + L L + + L + +P + L
Sbjct: 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR 660
Query: 985 DENESVRDAALGAGHVLVEHYATTSLP----LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040
+++ L A +L+++Y+ + +L + I + + Q ++ L L
Sbjct: 661 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720
Query: 1041 FKVAGTSGKAL---------LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM--- 1088
+ K L +G + A ++ N L
Sbjct: 721 KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 1089 ---VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE-RRQVAGR 1144
+L+ +Q+ + K + A T KE V+ + S S++ R +A
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL 840
Query: 1145 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQG------------------------- 1179
+LGE+ + + ++ PS +
Sbjct: 841 SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 900
Query: 1180 --------VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1231
+ L E+++SA L +++ + + + R L
Sbjct: 901 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 960
Query: 1232 SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN- 1290
+ + L+ + + +K +S + P + + L
Sbjct: 961 IDPETLLPRLKGYLIS--GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDF-LKTLED 1017
Query: 1291 ---------AHALGALAEVAGPGLNFHLGTILPALLS------------AMG------DD 1323
+ A + L T+LP L + MG DD
Sbjct: 1018 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDD 1077
Query: 1324 DMDVQSLAKEAAET-VTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 1382
+D++ A E T + +D + ++ + G+ D I+ + ++
Sbjct: 1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS 1136
Query: 1383 YLVDEAPNMISTLIVLLS------------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 1430
++ ++ L + + +A A++ ++ E P
Sbjct: 1137 AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMS 1196
Query: 1431 KVIRDAISTS 1440
+ S
Sbjct: 1197 EFQSQISSNP 1206
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 157 bits (397), Expect = 1e-38
Identities = 150/898 (16%), Positives = 306/898 (34%), Gaps = 82/898 (9%)
Query: 955 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1014
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1015 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1074
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1075 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1134
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1135 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1193
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1194 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 1250
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 1251 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN-------AHALGALAEVAGP 1303
D + + + + + A L A+
Sbjct: 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366
Query: 1304 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 1363
L T+ PAL+S + + +V++ A ++ + ++
Sbjct: 367 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 426
Query: 1364 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423
L + PN++ L + + T + L+ +V +P
Sbjct: 427 -------------------MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG 467
Query: 1424 EVQPSYIKVIRDAISTSRDKE--RRKKKGGPILIPGFC-------LPKALQPLLPIFLQG 1474
+ ++ I + DK K + +Q L+P +
Sbjct: 468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 527
Query: 1475 LISGSAELREQAALGLGELIEV------TSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKS 1527
+ ++ +A L +L++V S ++ + I+ + Q VK
Sbjct: 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKE 587
Query: 1528 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 1587
+S + II G L LP F++ L++ + + AL L S L + P+
Sbjct: 588 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPV 647
Query: 1588 VGD----LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
+G+ L S L+ + ++ L+AL ++K+ S+++A+ V L L+ D H
Sbjct: 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707
Query: 1644 VRVSAASILGIMSQCMED---GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700
V A S L +++ +L EL+ L SP S ++ F +
Sbjct: 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML--DFFQALVVT 765
Query: 1701 ISMSPLFLSILDRLKSSLKDEKFP-LREASTKALGRLLLHQIQSGPANTTVVVDILASVV 1759
+ + ++ +L L + + + S ++ + + ++ P VV V
Sbjct: 766 GTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV 825
Query: 1760 SALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 1817
+ +R AL +L V + + + + E S V+ AA
Sbjct: 826 KN-SRSTDSIRLLALLSLGEVGHHIDLSGQLELK---SVILEAFSSPSEEVKSAASYA 879
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 4e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 300 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 356
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 357 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 414
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 415 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 458
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 459 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 515
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 516 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 562
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 563 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 622
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 623 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 682
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 683 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 798
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 799 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 858
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTAL--------THKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 859 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 918
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKN--SRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 919 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 978
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 979 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1038
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1039 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1098
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1099 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1140
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1141 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1197
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1198 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 1241
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 2e-22
Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 80/537 (14%)
Query: 1312 ILPALLSAMGDDDMDVQSLA----KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 1367
+ LL M D D + +A + ++ +D++ +V +LK + D ++
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 1368 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP----- 1422
+ +G K + ++ TL + + L V+ +P
Sbjct: 67 LAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 1423 ----KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP----LLPIFLQG 1474
V + AI+ D + + + L +L L
Sbjct: 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 183
Query: 1475 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS 1534
L S +R++ + LG L+ + + L+ + + ++
Sbjct: 184 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE----HLLSELSKNDSMSTTRTYIQCIA 239
Query: 1535 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 1594
I R+ G + +L + ++ ++
Sbjct: 240 AISRQAGHRIGEYLEK------------------------------------IIPLVVKF 263
Query: 1595 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 1654
V D +RE + A + ++ K V V + LK L Y + + +
Sbjct: 264 CNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323
Query: 1655 MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 1714
+ +D + + SW R + + + + ++ L
Sbjct: 324 DADGGDD--DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEFYKTVSPAL 379
Query: 1715 KSSLKDEKFPLREASTKALGRLL--------------LHQIQSGPAN--TTVVVDILASV 1758
S K+ + ++ A LL + P + V +I+ ++
Sbjct: 380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKAL 439
Query: 1759 VSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAE 1815
+ + S + R+ + L + P A+ H+ + P + L D S+ L +
Sbjct: 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKID 496
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 74.0 bits (180), Expect = 4e-13
Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 4/233 (1%)
Query: 1587 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRV 1646
+ +LL + SD R L L+ + + +V ++ L+ + V+
Sbjct: 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66
Query: 1647 SAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 1706
A LG + +++ Q+ ++ L S R S + T + P A S S L
Sbjct: 67 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 126
Query: 1707 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GPANTTVVVDILASVVSALHD 1764
++ ++ L + S + ++ + S G IL ++ L
Sbjct: 127 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186
Query: 1765 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 1817
VR+R + AL + + + + V L L+E K+ S +C
Sbjct: 187 PRLAVRKRTIIALGHLVMSCGNIVFVD--LIEHLLSELSKNDSMSTTRTYIQC 237
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 284 bits (727), Expect = 8e-83
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 566 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 625
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 626 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 685
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 686 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 805
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 865
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 866 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 926 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 980
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 981 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1040 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1098
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1099 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1157
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1218 VRESAGLAFSTL 1229
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 9e-42
Identities = 96/665 (14%), Positives = 204/665 (30%), Gaps = 95/665 (14%)
Query: 1125 NTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIG 1183
LI L + + R + + L + LG ER ++P L+ + D +
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-ALAEQ 71
Query: 1184 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 1243
L G + + L+P + + VR+ A + + ++
Sbjct: 72 LGTFTTLVGGPEYV---HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128
Query: 1244 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 1303
L+ L + RT A G +
Sbjct: 129 PLVKRLAGGD-----------WFTSRT---------------------SACGLFSVCYPR 156
Query: 1304 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES-LVSELLKGVGDNQ 1362
+ + + DD V+ A V++ + V+S ++ D Q
Sbjct: 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216
Query: 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
S+R + + L D ++ TL D + + + +V
Sbjct: 217 DSVRLLAVEACVNIAQ--LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274
Query: 1423 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 1482
E+ + L+P F + AE+
Sbjct: 275 PEITKTD-------------------------------------LVPAFQNLMKDCEAEV 297
Query: 1483 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542
R A+ + E E S + ++ P I+ + VKSA+ S + + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1543 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS---ALSTRVDPLVGDLLSSLQVSD 1599
+ L F+ L+D VR + L ++ + L+ ++ + +
Sbjct: 358 --DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1600 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG-IMSQC 1658
+R AI+ + + G ++ S+ + +R +A S L ++ +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 1659 MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 1718
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 1719 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 1778
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 1779 SVAKA 1783
++ A
Sbjct: 584 VLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 6e-38
Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 93/656 (14%)
Query: 894 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 953
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 954 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1013
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1014 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1072
+ + +W R S+ L
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFS-------------------------------VCYP 155
Query: 1073 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI--VANTPKTLKEIMPVLMNTLISS 1130
+ + E+ + SD + VR+AA V EI+P+ +
Sbjct: 156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS----NL 211
Query: 1131 LASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1189
+ R +A A + + L E + ++P L + +D S R V +E+
Sbjct: 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271
Query: 1190 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAIDEIVPT 1244
+ G +L+P + + D EVR +A ++ + +I+P
Sbjct: 272 AVGPEI---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328
Query: 1245 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 1304
+ + D V++ A + L+ + G
Sbjct: 329 IKELVSDANQH------------VKSAL------------------ASVIMGLSPILGK- 357
Query: 1305 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGVGDNQA 1363
+ + +LP L+ + D+ +V+ + V VI + +SL+ +++ D +
Sbjct: 358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416
Query: 1364 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV-LLSDSDSTTVAAAWEALSRVVASVP 1422
+R + + + V+ +++L + L D AA L ++V
Sbjct: 417 RVRLAIIEYMPLL---AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1423 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 1480
KE + I A+S + R +L + +LP L+ A
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 1481 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536
+R A L ++ + +L+ V PI L ++ D+ VK L+++
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPI---LEKLTQDQ-DVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-37
Identities = 90/624 (14%), Positives = 202/624 (32%), Gaps = 64/624 (10%)
Query: 1204 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGL 1262
I + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED--------- 62
Query: 1263 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 1322
V A LG + G ++ +LP L S
Sbjct: 63 ----EVLLAL------------------AEQLGTFTTLVGG--PEYVHCLLPPLESLATV 98
Query: 1323 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSK 1381
++ V+ A E+ ++ +E+ L+K G + + R S+ L Y
Sbjct: 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158
Query: 1382 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 1441
+ E + L SD AA L + + S I + +++
Sbjct: 159 SAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215
Query: 1442 DKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
R + + ++P Q S +R A EL +
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275
Query: 1500 QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALKPFLPQLQTTFIK 1557
+ K ++P ++ D +V++A + + Q+ +
Sbjct: 276 EITKTDLVPA---FQNLMKDCEA-EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Query: 1558 CLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 1614
+ D+ + V+S+ A + LS + ++ L+ L+ L+ +R I++ L V
Sbjct: 332 LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391
Query: 1615 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL-N 1673
+ G + + + +L VR++ + +++ + + L L
Sbjct: 392 EVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA 448
Query: 1674 LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 1733
+A R + + + + +I+ ++ + D + R + +
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFCI 504
Query: 1734 GRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 1793
L Q +L +V+ D + VR +L+ + ++ +
Sbjct: 505 NVLSEVCGQD-----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV 559
Query: 1794 LFGPALAECLKDGSTPVRLAAERC 1817
P L + +D V+ A+
Sbjct: 560 K--PILEKLTQDQDVDVKYFAQEA 581
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-25
Identities = 73/434 (16%), Positives = 143/434 (32%), Gaps = 22/434 (5%)
Query: 1386 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKE 1444
D++ I+ LI L + D + + LS + ++ E + + + D I +
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 1445 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 1504
+ P+ + LLP +R++A L + S L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1505 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTR 1564
+P+ L + +++ S+ + A+K +L+ F D T
Sbjct: 126 HFVPLVKRLA----GGDWFTSRTSACGLFSVCYPRVSSAVK---AELRQYFRNLCSDDTP 178
Query: 1565 TVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 1621
VR +AA LG+ + + ++ + +R + A + + +
Sbjct: 179 MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1622 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-DLLQELLNLASSPSW 1680
A V L+ VR A + + + DL+ NL
Sbjct: 239 LEA---LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
R + F + + + + IL +K + D ++ A + L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
+ + +L ++ L D+ EVR +S L V + + L PA+
Sbjct: 356 GKD-----NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--PAIV 408
Query: 1801 ECLKDGSTPVRLAA 1814
E +D VRLA
Sbjct: 409 ELAEDAKWRVRLAI 422
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 4e-11
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 17/235 (7%)
Query: 1591 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAAS 1650
L+ L+ D +R + L + G + + L D + +D+D V ++ A
Sbjct: 15 LIDELRNEDVQLRLNSIKKLSTIALALG---VERTRSELLPFLTDTI-YDEDEVLLALAE 70
Query: 1651 ILGIMSQCMEDGQLAD-LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 1709
LG + + + LL L +LA+ R +V + + + F+
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVP 129
Query: 1710 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEV 1769
++ RL + F R ++ + V ++ + DD+ V
Sbjct: 130 LVKRL---AGGDWFTSRTSACGLFSVCYPRVSSA------VKAELRQYFRNLCSDDTPMV 180
Query: 1770 RRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 1824
RR A S L AK + + P + D VRL A V+ QL
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEII--PMFSNLASDEQDSVRLLAVEACVNIAQL 233
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 96 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 151
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 152 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 197
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 198 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 255
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 256 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 310
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 311 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 367
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 368 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 416
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 417 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 476
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 477 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 535
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 536 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 594
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 595 AAFGLAGV 602
A L +
Sbjct: 578 AQEALTVL 585
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 2e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 751
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 752 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 811
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 871
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 872 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 905
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 571 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 626
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 627 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 687 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 744
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 944
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 945 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1004
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1005 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 811 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 869
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 870 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 926
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 927 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 983
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 984 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 1118 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1174
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1175 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1234
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 1294
++ +++ +L + SV++ + L+ AL
Sbjct: 131 ---LEAQQESIVESLSNKNP------------SVKSETA------LFIARALTRTQPTAL 169
Query: 1295 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 1354
L + +L+ + + D V+ + EA T+ ++ ++ V L++++
Sbjct: 170 NK----------KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 10/195 (5%)
Query: 1548 LPQLQTTFIKCLQDSTRTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 1601
L ++ F L++ T+R + L KL + LV L + S+
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1602 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661
+ L + K K S+ L + +V + + +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASA-CVPSLLEKFKEKKPNVVTALREAIDAI---YAS 128
Query: 1662 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 1721
L + ++ S+ + + + + L A L L + L +L +
Sbjct: 129 TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP 188
Query: 1722 KFPLREASTKALGRL 1736
+R++S +ALG L
Sbjct: 189 DPTVRDSSAEALGTL 203
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 29/220 (13%), Positives = 74/220 (33%), Gaps = 21/220 (9%)
Query: 1644 VRVSAASILGIMSQC---MEDGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPS 1699
+R + +L + +E+G+ L+ L + + + A +
Sbjct: 31 LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90
Query: 1700 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 1759
S + + L K++K + A +A+ + +T + S+V
Sbjct: 91 --RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI---------YASTSLEAQQESIV 139
Query: 1760 SALHDDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERC 1817
+L + + V+ + + + L +L + L + VR ++
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEA 199
Query: 1818 AVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSE 1857
+L G + + + +D +++K E + +E
Sbjct: 200 LGTLIKLM-GDKAV---TPLLADVDPLKMAKIKECQEKAE 235
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 972 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1027
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1028 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1138
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1139 RQVAGRALGELVRKLGERVLPSIIPIL 1165
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 9e-08
Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%)
Query: 1385 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY---IKVIRDAISTSR 1441
VD M L + T + E L +++ PK Y + ++ I+
Sbjct: 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS 69
Query: 1442 DKERRKKKGGPILIPGFCLPKALQP----LLPIFLQGLISGSAELREQAALGLGELIEVT 1497
+ G + + L K +P L+ + + + T
Sbjct: 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST 129
Query: 1498 SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA--LKPFLPQLQTTF 1555
S ++ +E ++ + ++ VKS ++ + + K L L T+
Sbjct: 130 SLEAQQE-------SIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTA 1609
+K L + TVR S+A ALG L L D V LL+ + + A I+E A
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMG--DKAVTPLLADVDPLKMAKIKECQEKA 234
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 40/206 (19%)
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1138
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1139 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1195
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA 133
Query: 1196 LL------------------------------------SFMDELIPTIRTALCDSILEVR 1219
+ L ++ L + VR
Sbjct: 134 QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193
Query: 1220 ESAGLAFSTLFKSAGMQAIDEIVPTL 1245
+S+ A TL K G +A+ ++ +
Sbjct: 194 DSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 12/202 (5%)
Query: 1584 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
+ + D L+ +R+ L L+ +L K + V ++ K + +
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1644 VRVSAASILGIMSQCMEDG---QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700
+ A L ++++ + + + LL
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1701 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS 1760
+ + + SL ++ ++ + + R L + Q N ++ + S+V
Sbjct: 133 --------AQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVK 183
Query: 1761 ALHDDSSEVRRRALSALKSVAK 1782
L++ VR + AL ++ K
Sbjct: 184 TLNEPDPTVRDSSAEALGTLIK 205
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-36
Identities = 136/970 (14%), Positives = 301/970 (31%), Gaps = 173/970 (17%)
Query: 735 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 792 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 851
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 911
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 912 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 963
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 964 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1020
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1021 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1140
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1141 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1197
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1198 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQT 1254
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A Q
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 1255 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTI 1312
+ L + A+G LA+ G LN ++ +
Sbjct: 498 KN-----LLILYD-------------------------AIGTLADSVGHHLNKPEYIQML 527
Query: 1313 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 1372
+P L+ + + L E ++ V S + V ++
Sbjct: 528 MPPLIQKWNMLKDEDKDLFP-LLECLSSVATALQ--SGFLPYCEPVYQRCVNL------- 577
Query: 1373 IGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 1432
+ + + D + A + LS + + ++
Sbjct: 578 ---------VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV--- 625
Query: 1433 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 1492
A +L + Q + E+R+ + LG+
Sbjct: 626 ------------------------------ARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1493 LIEVTSEQSLKEFVIPITGPLIRIIG---DRFPWQVKSAILSTLSIIIRKGGIALKPFLP 1549
L + + + V P + I+G + V + + I + GI ++P++P
Sbjct: 656 LTK-----ACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 710
Query: 1550 QLQTTFIKCLQDST--RTVRSSAALALGKL-----SALSTRVDPLVGDLLSSLQ-VSDAG 1601
+ ++ + +T+ + A+ +G+L ++ + + +SL+ + D
Sbjct: 711 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 770
Query: 1602 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661
+++ + ++ V +V + DD +R IL + D
Sbjct: 771 EKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD--LRDMFCKILHGFKNQVGD 828
Query: 1662 GQLADLLQEL 1671
+
Sbjct: 829 ENWRRFSDQF 838
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 2e-29
Identities = 92/650 (14%), Positives = 201/650 (30%), Gaps = 73/650 (11%)
Query: 1240 EIVPTLLHALEDDQTSDT-----ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN---- 1290
+ L+ L ++ D + LK + + + L+
Sbjct: 45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP 104
Query: 1291 ---AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA----AETVTLVID 1343
A + +A G + +LP L S + +D + A A E ++D
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164
Query: 1344 EEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL 1399
+ ++ ++ + L+ + IR + + F + L+ + I L L
Sbjct: 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA 224
Query: 1400 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 1459
D + AL ++ + P ++ + ++D++
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 284
Query: 1460 ----LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------------- 1499
L LP + L++G L G++ +
Sbjct: 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344
Query: 1500 -----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554
++ ++P PL++ + W VK + + L I + P+LP+L
Sbjct: 345 LDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404
Query: 1555 FIKCLQDSTRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQVSDAGIREAILT 1608
I+CL D VRS L + + T + PL+ +LL + S+ ++EA +
Sbjct: 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464
Query: 1609 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 1668
A + + A + + + +++ + ++ + +I + + +
Sbjct: 465 AFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524
Query: 1669 QELLNL------ASSPSWAARHGSVLVFATFLRHNPSAIS--MSPLFLSILDRLKSSLKD 1720
Q L+ + ++ S P++ ++ ++ +L
Sbjct: 525 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQ 584
Query: 1721 EKFP-------------LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 1767
+ L L + +IL + + D
Sbjct: 585 AMLNNAQPDQYEAPDKDFMIVALDLLSG-LAEGLGGNIEQLVARSNILTLMYQCMQDKMP 643
Query: 1768 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 1817
EVR+ + + L + KA + +A F P L L V A
Sbjct: 644 EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWA 693
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 126 bits (316), Expect = 3e-29
Identities = 109/749 (14%), Positives = 225/749 (30%), Gaps = 98/749 (13%)
Query: 1121 PVLMNTLISSLASSSSERRQVAGRALGELVRK----LGERVLPSIIPILSRGLKDPSASR 1176
+ +++ L S R ++G L V+ V I + D S
Sbjct: 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI 106
Query: 1177 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-- 1234
R V I ++ + + +L+P + + L E A A + + +
Sbjct: 107 RATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 1235 ------MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVRTTAVLPHI---LPKLVH 1283
+ ++ ++P L + + A+ + Q + RT A++ HI + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 1284 LPLS--------AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 1335
L AL L EV L H+ I+ +L D D +V A EA
Sbjct: 223 LAGDEEPEVRKNVCR--ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV---ALEAC 277
Query: 1336 ETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 1395
E + ++ + ++ L LI K +D
Sbjct: 278 EFWLTLAEQPICKDVLVRHLPK--------------LIPVLVNGMKYSDIDIILLKGDVE 323
Query: 1396 IVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP 1452
D SD + AL + E+ P + ++++ + E K+ G
Sbjct: 324 GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---HHEWVVKESGI 380
Query: 1453 ILI------PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 1506
+++ + L L+P +Q L A +R L Q ++
Sbjct: 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL 440
Query: 1507 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 1566
P+ L++ I D +V+ A S + + + L P+L + T +
Sbjct: 441 KPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 499
Query: 1567 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVS--DAGIREAILTALKGVLKHA 1617
A+G L+ + L+ L+ + + +L L V
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559
Query: 1618 GKSVSSAVK----------------IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661
+ + + D D + A +L +++ +
Sbjct: 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG 619
Query: 1662 G-----QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 1716
+++L + R S + + + P + L +
Sbjct: 620 NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHV--KPCIADFMPILGT 677
Query: 1717 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH--DDSSEVRRRAL 1774
+L E + +T A+G + + G + +L +V ++ + +
Sbjct: 678 NLNPEFISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA 734
Query: 1775 SALKSVAKANPSAIMVHVALFGPALAECL 1803
+ + P + + F L
Sbjct: 735 ITIGRLGYVCPQEVAPMLQQFIRPWCTSL 763
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 342 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 399
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 400 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 459
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 460 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 516
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 517 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 575
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 635
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 636 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 756 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 807
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 867
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 868 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 911
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 912 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1012
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1041
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 3e-20
Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 10/272 (3%)
Query: 1549 PQLQTTFIKCLQDST---RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 1605
Q ++ L++S T++ + L +L+ + + +L+ L+ D R
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDFNNYLIFVLTKLKSEDEPTRSL 67
Query: 1606 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA 1665
LK +K ++ + V + S + + +R + ++ ++ E
Sbjct: 68 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP 127
Query: 1666 DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEK 1722
DLL +L +L S + G+ + + L ++ + K
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 1723 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 1782
+R + + + ++ + Q+ + + + ++ + D+ EVR+ AL + +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLH---IDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244
Query: 1783 ANPSAIMVHVALFGPALAECLKDGSTPVRLAA 1814
++ H+ + + +D V L A
Sbjct: 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-32
Identities = 121/850 (14%), Positives = 253/850 (29%), Gaps = 169/850 (19%)
Query: 863 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 920
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 921 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 971
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1027
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1028 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1087
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1144
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1145 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1204
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1205 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 1253
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 1254 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH--------ALGALAEVAGP 1303
T ++ L + P ++ L+ N AL + E A
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533
Query: 1304 GLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 1362
+ +I ++ +G +D L E D + ++ L S +L +
Sbjct: 534 TVAETSASISTFVMDKLGQTMSVDENQLTLE---------DAQSLQELQSNILTVL---A 581
Query: 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA-AAWEALSRVVASV 1421
A IR+S + + A ++ LL DS + + A+S + AS+
Sbjct: 582 AVIRKSPSSVEPV------------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629
Query: 1422 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 1481
K + L+ P L+ L +
Sbjct: 630 GKGFEK-----------------------------------YLETFSPYLLKALNQVDSP 654
Query: 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKG 1540
+ A+G I + E+ + + + L ++I + ++K A+LS I
Sbjct: 655 VS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713
Query: 1541 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 1600
G P+L + + D + +
Sbjct: 714 GADFIPYLNDIMALCVAAQNTKP------------------ENGTLEALDYQIKVLEAVL 755
Query: 1601 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 1660
I+ L + V + + + V +D + +D +A ++G ++
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGTIFQF-IAQVAEDPQLYSEDATSRAAVGLIGDIAAMFP 814
Query: 1661 DGQLADLLQE 1670
DG + +
Sbjct: 815 DGSIKQFYGQ 824
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 7e-22
Identities = 110/711 (15%), Positives = 233/711 (32%), Gaps = 94/711 (13%)
Query: 377 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 436
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 437 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 491
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 492 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 549
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 550 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 607
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 666
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 667 SDQVVAVREAAECAARAMMSQ------LSAQGVKLVLPSLLKGLEDKAWRTKQSS----V 716
+DQ + V+E ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTII 478
Query: 717 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------P 770
L+ +A P + P +V L + + A + ++++
Sbjct: 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAE 537
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLAL 813
AS+ ++ L + L + LQ+ + + A P +
Sbjct: 538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM 597
Query: 814 LVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 872
L+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPV 655
Query: 873 RSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGT 928
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715
Query: 929 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 -DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV---- 759
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039
+ L Y T + ED +++V L+GD+
Sbjct: 760 GIVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 3e-19
Identities = 107/890 (12%), Positives = 267/890 (30%), Gaps = 112/890 (12%)
Query: 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 714
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 715 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 761
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 762 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 813
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 814 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 872
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 873 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 932
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 933 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 992
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 993 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1052
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1112
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1113 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1163
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1164 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1222
L + M + + + L ++
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1223 GLAFSTLFKSAGMQAIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILPKL 1281
L + + + + + + + +D + ++L + +A +
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED----- 616
Query: 1282 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV 1341
F +A+ ALA G G +L T P LL A+ D V A ++
Sbjct: 617 -----DVF--YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 1342 IDEEG---VESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 1396
++E+ +++++ L + + + A ++ + + G N + ++++ +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 1397 VLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 1456
+ Y + +A+ + P +
Sbjct: 730 AAQNTKPENGT----------------LEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773
Query: 1457 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 1506
+ + Q + + + A +G++ + + S+K+F
Sbjct: 774 PY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 2e-15
Identities = 61/447 (13%), Positives = 141/447 (31%), Gaps = 60/447 (13%)
Query: 1342 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 1401
+ E + + L + + I ++A LI P ++ ++
Sbjct: 88 VSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADI--ELPHGAWPELMKIMVDNTGA 145
Query: 1402 SDSTTVA-AAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 1460
V A+ AL + S + Q L
Sbjct: 146 EQPENVKRASLLALGYMCESADPQSQA--------------------------------L 173
Query: 1461 PKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG 1518
+ +L +QG S S +R A L + + +E ++
Sbjct: 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT 233
Query: 1519 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ----LQTTFIKCLQDSTRTVRSSAALAL 1574
+V++A L I+ K +KP++ Q L +K D + + +
Sbjct: 234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS------MTV 287
Query: 1575 GKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLK 1634
S + + + A ++ L + L V + + +
Sbjct: 288 EFWSTIC--------EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339
Query: 1635 DLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFL 1694
DD +V +SA + L + +Q + L +L+ + ++ +W R +V+ F + +
Sbjct: 340 PED--DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397
Query: 1695 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDI 1754
P + + L + + + D+ ++E + +GR+ + + +
Sbjct: 398 -DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS-VAESIDPQQHLPGV 455
Query: 1755 LASVVSALHDDSSEVRRRALSALKSVA 1781
+ + + L D +V + ++
Sbjct: 456 VQACLIGL-QDHPKVATNCSWTIINLV 481
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 6e-13
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 198 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 257
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 258 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 317
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 318 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 377
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 378 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 438 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 491
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 492 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 546
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 547 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 588
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 589 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 645
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 646 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 702
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 703 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 760
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 761 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 820
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 875
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 876 AARAIGSLIRGMG 888
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 6e-10
Identities = 59/395 (14%), Positives = 128/395 (32%), Gaps = 59/395 (14%)
Query: 1472 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 1531
L L+S + AA + + ++ ++ I ++ G P VK A L
Sbjct: 101 LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI---MVDNTGAEQPENVKRASLL 157
Query: 1532 TLSIIIRKGGIALKPFLPQLQTTFIKCLQ-----DSTRTVRSSAALALGKLSALSTR--- 1583
L + + + I +Q ++++ VR +A AL
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217
Query: 1584 ----VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 1639
+ L+ + + Q D ++ A L ++ + ++ +Y++ +
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277
Query: 1640 DDDHVRVSAASIL--------------------GIMSQCMEDGQLADLLQELLNLASSPS 1679
+D V + S + D++ LLNL + +
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337
Query: 1680 -------WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 1732
W + F ++ + I +L+ ++ ++ + + REA+ A
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHI-----LEPVLEFVEQNITADNWRNREAAVMA 392
Query: 1733 LGRLLLHQIQSGPAN---TTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 1789
G I GP T V L S+++ ++D S +V+ + +A + +I
Sbjct: 393 FG-----SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447
Query: 1790 V--HVALFGPALAECLKDGSTPVRLAAERCAVHAF 1822
H+ A L+D + +
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVATNCS--WTIINL 480
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 14/266 (5%)
Query: 1357 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
+ + + IR + A L + +++ LI LL D T V A +
Sbjct: 2 SMEEEEFDIREALANGEHL---EKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMV 58
Query: 1417 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 1476
+ + +P +K + + S ++ P+ ++ ++P+
Sbjct: 59 IAKTREDLYEPM-LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYR 117
Query: 1477 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536
G + + + L E+ + + I + ++ + + K L+ + +
Sbjct: 118 IGDEKTKINVSYALEEIAKAN-----PMLMASIVRDFMSMLSSK-NREDKLTALNFIEAM 171
Query: 1537 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 1596
+ PFLP++ I L D VR+SA AL L+ L+ ++ +V L L
Sbjct: 172 GENSFKYVNPFLPRI----INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227
Query: 1597 VSDAGIREAILTALKGVLKHAGKSVS 1622
+ + + + + + +L G S S
Sbjct: 228 DTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-15
Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 46/271 (16%)
Query: 1065 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1123
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1183
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1184 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 1243
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 1244 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP 1303
+++ L D VR +A AL LA
Sbjct: 185 RIINLLHDGDE------------IVRASA------------------VEALVHLAT---- 210
Query: 1304 GLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334
LN L ++ L + D V KE
Sbjct: 211 -LNDKLRKVVIKRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 664 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 723
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 724 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 783
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 784 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 844 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 903
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 904 KSDNSNVERSGAAQGLSEVLAALGT 928
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 25/261 (9%)
Query: 1559 LQDSTRTVRSSAALA--LGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 1616
+++ +R + A L K+ ++ + ++ L+ L + + ++ + + K
Sbjct: 3 MEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT 62
Query: 1617 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 1676
+K + L + + A G M++ + + ++ L
Sbjct: 63 REDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-VKSMIPVLFANYR 117
Query: 1677 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
+ + NP ++ SI+ S L + + + + +
Sbjct: 118 IGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAM 171
Query: 1737 LLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 1796
G + V L +++ LHD VR A+ AL +A N V +
Sbjct: 172 -------GENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220
Query: 1797 PALAECLKDGSTPVRLAAERC 1817
E L D S+ V +
Sbjct: 221 -KRLEELNDTSSLVNKTVKEG 240
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 5e-15
Identities = 38/239 (15%), Positives = 94/239 (39%), Gaps = 26/239 (10%)
Query: 1545 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDA-GI 1602
+ L +L I+ L D TV +A + ++ +P++ L S L+ S+A +
Sbjct: 31 ESVLKKL----IELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPL 86
Query: 1603 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 1662
+ I A + K + V S + + L D+ +++ + L +++
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPV-----LFANYRIGDEKTKINVSYALEEIAKANPML 141
Query: 1663 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 1722
+A ++++ +++ SS + + ++ ++ ++ L R+ + L D
Sbjct: 142 -MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN------PFLPRIINLLHDGD 194
Query: 1723 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 1781
+R ++ +AL L + ++ + L+D SS V + + +
Sbjct: 195 EIVRASAVEALVHL--------ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 3e-13
Identities = 43/261 (16%), Positives = 95/261 (36%), Gaps = 22/261 (8%)
Query: 1481 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 1540
++RE A G L ++ E V+ LI ++ D W V +S + +I +
Sbjct: 9 DIREALANGE-HLEKILIMAKYDESVLK---KLIELLDDDL-WTVVKNAISIIMVIAKTR 63
Query: 1541 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSD 1599
+P L +L F + + A A G+++ V ++ L ++ ++ D
Sbjct: 64 EDLYEPMLKKL---FSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 1600 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 1659
+ + AL+ + K ++S V+ ++ + +++A + + M +
Sbjct: 121 EKTKINVSYALEEIAKANPMLMASIVRD-----FMSMLSSKNREDKLTALNFIEAMGENS 175
Query: 1660 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 1719
+ L ++NL R +V N ++ + L
Sbjct: 176 FK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK-------VVIKRLEELN 227
Query: 1720 DEKFPLREASTKALGRLLLHQ 1740
D + + + + RLLL +
Sbjct: 228 DTSSLVNKTVKEGISRLLLLE 248
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-11
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 971 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1030
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1031 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1084
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1085 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1144
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1145 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1194
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 982 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1038 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1097
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1098 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1157
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1218 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 1267
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 8e-10
Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 16/240 (6%)
Query: 1210 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILS 1267
++ + ++RE+ + + ++ L+ L+DD + A+ + I
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61
Query: 1268 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---PGLNFHLGTILPALLSAMGDDD 1324
R P +L KL L + +A+ G + +++P L + D
Sbjct: 62 TREDLYEP-MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD 120
Query: 1325 MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 1384
+ A E + + + S+V + + + + ++ I +NS Y+
Sbjct: 121 EKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYV 179
Query: 1385 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 1444
P +I LL D D A+A EAL + K KV+ + D
Sbjct: 180 NPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTS 230
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 7e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 873
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 874 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 933
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEIAKANPML-MAS 144
Query: 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 993
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 994 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1047
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 372 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 431
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 432 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 491
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 492 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 551
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 552 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 610
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 461 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 516
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 517 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 575
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 635
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 636 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 96.1 bits (238), Expect = 8e-20
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 481 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 540
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 541 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 586
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 587 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 630
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 631 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 675
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 676 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 793
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 794 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 841
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 842 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 889
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 890 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 942
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 943 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 985
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 986 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1029
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1030 Q 1030
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-14
Identities = 102/650 (15%), Positives = 191/650 (29%), Gaps = 219/650 (33%)
Query: 59 KDIGKSTK----KAD-----KGKTAKEEAREL---LLNEEASIREK-VQGV-QRNLSLML 104
KD+ K K + K A L LL+++ + +K V+ V + N ++
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 105 SALGEMAIANPVFAHSQLPSL--VKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWAL 162
S + PS+ +++ + D + K + P L
Sbjct: 96 SPIKTEQRQ---------PSMMTRMYIEQR--DRLYNDN--QVFAKYNVSRLQPY----L 138
Query: 163 DIATAL-RLIVTEEVHVD-------SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGP 214
+ AL L + V +D + + + + + C + + L + + P
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 215 LPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLL----------PLP------ 258
E +L ++LQ L +DP L
Sbjct: 196 -------------ETVL----------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 259 RLRMIS----------VLYHVLGVVPSYQAAIGSALNELCLGL---QPNEVASALHGVYT 305
LR + VL +V A +A N C L + +V L T
Sbjct: 233 ELRRLLKSKPYENCLLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 306 KDV---HVRMA---------CLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA 353
+ H M L + C P LP + + +++ +AE+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSI------IAES 336
Query: 354 AED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDEYPDSIQGSLST 408
D WD + + + L + S NV L AE + L +P S
Sbjct: 337 IRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 409 LFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNA- 467
L + W + D+ V++ L +L +
Sbjct: 392 LSLI---------------WFD--------------VIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 468 -----------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFENY--------LN 501
+++ ++ N + I+D + D+ L+ P + Y L
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL- 481
Query: 502 KKASDEEKYDLVR---------EGVVIFTGALA-----------------KHLAKDDPKV 535
K E+ L R E + ++ +DPK
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 536 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 585
+V+ +LD L E + + + L L ++ E + Q+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 64/424 (15%), Positives = 123/424 (29%), Gaps = 143/424 (33%)
Query: 1471 FLQGLISGSAEL--------REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 1522
+ ++S E+ L L + E+ +++FV ++R +
Sbjct: 41 MPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV----EEVLR---INYK 92
Query: 1523 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTT-FIKCLQDSTRTVRSSAALALGKLSALS 1581
+ + I + P + T +I+ + K +
Sbjct: 93 FLMSP--------------IKTEQRQPSMMTRMYIEQRDRLYNDNQV-----FAKYNV-- 131
Query: 1582 TRVDPLVGDLLSSLQVSDAGIREAI--LTALKGVLKH----AGKSVSSAVKIRVYSVLKD 1635
+R+ P L+ +R+A+ L K VL +GK+ + V
Sbjct: 132 SRLQPY-------LK-----LRQALLELRPAKNVLIDGVLGSGKTWVAL------DVCLS 173
Query: 1636 LVYHDDDHVRVSAASILGI----MSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFA 1691
+V I + C + ++LQ+LL P+W +R
Sbjct: 174 Y--------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS------- 217
Query: 1692 TFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV 1751
+ S I + SI L+ LK + + L L+L +Q+
Sbjct: 218 ----DHSSNIKLR--IHSIQAELRRLLKSKPYE------NCL--LVLLNVQN-------- 255
Query: 1752 VDILASVVSALHDDSSEVRRRAL--SALKSVAKANPSAIMVHVAL------FGPA----- 1798
A +A + + L + K V +A H++L P
Sbjct: 256 ----AKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 1799 LAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSDDSED 1858
L + L P L E + +L + A + D+ +
Sbjct: 307 LLKYL--DCRPQDLPREVLTTNPRRL---------------SIIAESIRDGLATWDNWKH 349
Query: 1859 SEND 1862
D
Sbjct: 350 VNCD 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-11
Identities = 119/771 (15%), Positives = 215/771 (27%), Gaps = 254/771 (32%)
Query: 887 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 942
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 943 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 998
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 999 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1055
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1056 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1113
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1114 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1170
+T+ E++ L+ + +S + SS + EL R L + L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCL- 247
Query: 1171 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTL 1229
+ L V ++ AF+
Sbjct: 248 -----------LVLLNV------------------------QNAKAWN-------AFN-- 263
Query: 1230 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 1289
LL T KQ+ + A HI L H ++
Sbjct: 264 LSC----------KILL------TTRF------KQVTDFLSAATTTHI--SLDHHSMTLT 299
Query: 1290 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 1349
L + Q L +E T + S
Sbjct: 300 PDEVKSLLLKYLD----------------------CRPQDLPREVLTTNPRRL------S 331
Query: 1350 LVSELLKG-----------VGDNQASIRRSS-AYLIGYFYKNSKLY-----LVDEAPNMI 1392
+++E ++ D +I SS L Y+ K++ A
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPT 389
Query: 1393 STLIVLLSDSDSTTVAAAWEALSR--VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 1450
L ++ D + V L + +V PKE I I + + E +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR- 447
Query: 1451 GPILIPGFCLPKALQP--LLPIFLQGLISGSAELREQAALGLG-ELIEVTSEQSLKEFVI 1507
++ + +PK L+P +L +G L + + + F
Sbjct: 448 --SIVDHYNIPKTFDSDDLIPPYLDQYF----------YSHIGHHLKNIEHPERMTLF-- 493
Query: 1508 PITGPLI---------RIIGDRFPWQVKSAILSTLS-IIIRKGGI------------ALK 1545
++ +I D W +IL+TL + K I A+
Sbjct: 494 ----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 1546 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 1596
FLP+++ I T +R AL + + + +Q
Sbjct: 550 DFLPKIEENLICS--KYTDLLR----------IALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-11
Identities = 75/652 (11%), Positives = 176/652 (26%), Gaps = 172/652 (26%)
Query: 1201 DELIPTIRTALCDSILEV--RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD------ 1252
D + D I+ S L S + + + V L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMS 96
Query: 1253 ----QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAHAL-GALAEV-AGPGL 1305
+ ++ I + K ++ L + L AL E+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPY--LKLRQALLELRPAKNV 153
Query: 1306 NFH--LG---TILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVS 1352
LG T + + + +L + L E ++ L+
Sbjct: 154 LIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLY 207
Query: 1353 EL---LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD-SDSTTVA 1408
++ D+ ++I+ + + L+ P L+ L + ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLV--LLNVQNAKA-- 258
Query: 1409 AAWEAL---SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 1465
W A +++ + + +V D +S + +
Sbjct: 259 --WNAFNLSCKIL------LTTRFKQVT-DFLSAATTTHISLDH----HSMTLTPDEVKS 305
Query: 1466 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--- 1522
+ L+ L +L + + + +E S+++ L D +
Sbjct: 306 ----LLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDG-------LATW--DNWKHVN 351
Query: 1523 -WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC------------------LQDST 1563
++ + I S+L+ L+P + + F +
Sbjct: 352 CDKLTTIIESSLN--------VLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 1564 RTVRSSAALALGKLSALSTRVDPL---VGDLLSSLQVS---DAGIREAILTALKGVLKHA 1617
V L K S + + + + L+V + + +I+
Sbjct: 402 SDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 1618 GKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL-LNLAS 1676
+ + Y + +H + E + L + + L+
Sbjct: 461 SDDL-IPPYLDQY-FYSHIGHH---------------LKNI-EHPERMTLFRMVFLDF-- 500
Query: 1677 SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF-----PLREASTK 1731
+ + +RH+ +A + S L+ L +LK + + P E
Sbjct: 501 --RFLEQK---------IRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYERLVN 546
Query: 1732 ALGRLLLHQIQSGPANTTVVVDILASVV-SALHDDSSEVRRRALSALKSVAK 1782
A+ L ++ ++ AL + + A K V +
Sbjct: 547 AILDFLPK------IEENLICSKYTDLLRIALMAEDEAI---FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 8e-11
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 248 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 307
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 308 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 365
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 366 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 405
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 406 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 460
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 461 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 520
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 521 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 568
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 569 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 627
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 628 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 673
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 674 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 720
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 7e-08
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 608 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 659
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 660 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 717
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 718 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 770
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 771 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 826
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 827 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 887 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 935
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 936 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1047
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1048 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1106
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1107 TIVA--NTPKTL 1116
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 5e-19
Identities = 112/807 (13%), Positives = 243/807 (30%), Gaps = 142/807 (17%)
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVL 923
V P A + + EN P + L L + ++ R
Sbjct: 10 TVSPDRLELEAAQKFLERAA----VENLPTFLVELSRVLANPGNSQVARV---------A 56
Query: 924 AALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 982
A L I+N + + ++ Y + + N ++V +L
Sbjct: 57 AGL-----------QIKNSLTSKDPDIKAQYQQRWLAID-------ANARREVKNYVLHT 98
Query: 983 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQSSVELLGDLL 1040
L E A+ + P L+P + + N N +++S++E +G +
Sbjct: 99 LGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158
Query: 1041 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1100
D + + I+ + M + + S +V+ A
Sbjct: 159 ---------------QDIDPEQLQDKSNEILTAI----------IQGMRKEEPSNNVKLA 193
Query: 1101 ALHVWKTIVANTPKTLK--EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1158
A + + T +M + + + R A + L +++ + +
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253
Query: 1159 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1218
+ P L + S V + E ++ ++ +L A
Sbjct: 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLAIEASEAAEQGRPPE 308
Query: 1219 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---------TALDGLKQILSVR 1269
S A A+ +VP L L +D A L + +
Sbjct: 309 HTSKFYA---------KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359
Query: 1270 TTAVLPHILPKLVHLPLSAFNAH------ALGALAEVAGPG-LNFHLGTILPALLSAMGD 1322
++PH+LP + + + A G + E P L + +P L+ M D
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 1323 DDMDVQS-----LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ-------------AS 1364
+ V+ + + I++ + L+ L++G+ A
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479
Query: 1365 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASV 1421
+A + + + L ++ L+ D + ++A+E+L +V +
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539
Query: 1422 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 1481
K+ P+ K +++ L + LQ I +
Sbjct: 540 AKDCYPAVQKTT------------------LVIME--RLQQVLQMESHIQSTSDRIQFND 579
Query: 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKG 1540
L+ L ++ Q + + L+R+ V+ L +S ++
Sbjct: 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639
Query: 1541 GIALKPFLPQLQTTFIKCLQDSTRT-VRSSAALALGKLS-ALSTRVDPLVGDLLSSL--- 1595
G ++ + L++ V +A +G L AL + + P +++ L
Sbjct: 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN 699
Query: 1596 ---QVSDAGIREAILTALKGVLKHAGK 1619
+ ++ IL+ + G
Sbjct: 700 LGNENVHRSVKPQILSVFGDIALAIGG 726
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 83.8 bits (206), Expect = 3e-16
Identities = 121/860 (14%), Positives = 245/860 (28%), Gaps = 120/860 (13%)
Query: 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 719
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 720 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 768 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 822
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 823 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 880
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 881 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 940
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 941 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1000
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1001 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE------- 1053
L +P +LP +++ I N +WR R ++V G +L + K L+
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 1054 GGSDDE-----GASTEAHGR---AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1105
D + GR + E D L + V +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAF 474
Query: 1106 KTIVANT--------------PKTLKEIMPVLMNTLISSLASSSSER---RQVAGRALGE 1148
++ L +++ L+ + + R A +L E
Sbjct: 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534
Query: 1149 LVRKLGERVLPSIIP------------------ILSRGLKDPSASRRQGVCIGLSEVMAS 1190
+V+ + P++ I S + + +C L V+
Sbjct: 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRK 594
Query: 1191 AGKSQLLSFMDELIPTIRTALCDSI--LEVRESAGLAFSTLFKSAG---MQAIDEIVPTL 1245
L D ++ ++ + V+E A +A STL + G ++ ++ P L
Sbjct: 595 VQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654
Query: 1246 LHALEDDQTSDT-----ALDG---------LKQILSVRTTAVLPHILPKLVHLPLSAFNA 1291
L++ L G + +L ++ + VH +
Sbjct: 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714
Query: 1292 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 1351
G +A G +L +L L A + + E
Sbjct: 715 SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RESCLEAY 769
Query: 1352 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST--TVAA 1409
+ +++G+ +Q ++ + ++S + + D D T VA
Sbjct: 770 TGIVQGLKGDQENVHPDVMLVQPR------------VEFILSFIDHIAGDEDHTDGVVAC 817
Query: 1410 AWEALSRVVASVPKEVQPSY 1429
A + + + K+V
Sbjct: 818 AAGLIGDLCTAFGKDVLKLV 837
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 2e-15
Identities = 103/774 (13%), Positives = 232/774 (29%), Gaps = 107/774 (13%)
Query: 628 NSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 684
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 685 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 739
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 740 KLTEVLTDTH--------------------PKVQSAGQTALQQVGSVIKNPEIAS----- 774
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 775 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW- 380
Query: 829 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888
+ AA + EP + P + +P + +++ DP VR AA +G + +
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 889 E-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 943
E L+ L++ L V + +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLS-AEPRVASNVCW-----------------AFSSLAEAAY 482
Query: 944 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1003
D L + Q L D ++R +A + +V+
Sbjct: 483 EAADVADDQEEPATYCL-----SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1004 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1063
+ A P + + E L +L + + +D +
Sbjct: 538 NSAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTSDRIQFNDLQSLLC 585
Query: 1064 EAHGRAIIEVLGRDKR---NEVLAALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKE 1118
+ +V +D + V+A+L + S V++ AL T+V +
Sbjct: 586 ATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645
Query: 1119 IMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSA 1174
M L L + + A +G+L R L ++P ++ +L L + +
Sbjct: 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV 705
Query: 1175 SR--RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + + + +A A + +++ ++ T++ A + + + L
Sbjct: 706 HRSVKPQILSVFGD-IALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL--- 761
Query: 1233 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH 1292
++ E ++ L+ DQ + L Q +L I +
Sbjct: 762 --RESCLEAYTGIVQGLKGDQENVHPDVMLVQPR---VEFILSFIDHIAGDEDHTDGVVA 816
Query: 1293 A----LGALAEVAGPGL--NFHLGTILPALLS-AMGDDDMDVQSLAKEAAETVT 1339
+G L G + ++ LL+ ++LA+ A + +
Sbjct: 817 CAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 3e-15
Identities = 116/863 (13%), Positives = 272/863 (31%), Gaps = 159/863 (18%)
Query: 445 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK-- 502
++LP + L R LA+ R+ AG+ I +++++ P + +
Sbjct: 28 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGLQI-----KNSLTSKDPDIKAQYQQRW 80
Query: 503 KASDEEKYDLVREGVV-----------IFTGALAKHLAKDDPKVH--AVVDKLLDVLNTP 549
A D V+ V+ + +A + P ++ +L+ + P
Sbjct: 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP 140
Query: 550 S--EAVQRAVSSCLSPLMQS-----MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGV 602
+ E ++ + + + Q +QD++ +++ ++ + K + + AA
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200
Query: 603 VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECL---CEKLGRLFEPYVIQML 659
F ++ K + + + + + A + L + E Y+ L
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260
Query: 660 PLLLVAF--SDQVVAVREAAEC------AARAMMSQLSAQGVKLVLPSLLKGL------- 704
+ + SD + E + + S + P
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320
Query: 705 -----------------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 747
+D W +++ L +A C +P ++P + E + +
Sbjct: 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKN 377
Query: 748 THPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGLTDPNDHTKYS----LDILLQ 799
+ + A A + + P + +PTL+ + DP+ + + + + +
Sbjct: 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 800 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD---------- 849
++ LA L+ + GL ++ E D
Sbjct: 438 LLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496
Query: 850 --MIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEENFP----------- 893
+ L++ ++ + P +RS A ++ +++ ++ +P
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 894 ------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR------N 941
+ S + N +S L VL + I ++
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 942 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALG---- 996
+ V++ L L LG +F Y++ P + GL + V AA+G
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 997 ---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1053
A + + + LLL + + + + ++ + + GD+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHRS--VKPQILSVFGDIALAI---------- 724
Query: 1054 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV---- 1109
G + + ++ L + + +V + Y + D +R++ L + IV
Sbjct: 725 ------GGEFKKYLEVVLNTLQQASQAQVDKSDYDMV-DYLNELRESCLEAYTGIVQGLK 777
Query: 1110 ---ANTPKTLKEIMPVLMN-----TLISSLASSSSERRQVAGRALGELVRKLGERVL--- 1158
N + + P + I+ + A +G+L G+ VL
Sbjct: 778 GDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837
Query: 1159 ---PSIIPILSRGLKDPSASRRQ 1178
P I +L+ G + + +
Sbjct: 838 EARPMIHELLTEGRRSKTNKAKT 860
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 2e-14
Identities = 97/704 (13%), Positives = 199/704 (28%), Gaps = 136/704 (19%)
Query: 372 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 431
+ +A + VR+AA + L + Y ++
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYME---------------------------- 253
Query: 432 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 491
+ + + A+ +V +
Sbjct: 254 ----------------TYMGPALFAITIEAMKSDIDEVA---------------LQGIEF 282
Query: 492 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 551
+ + ++ E + R L P + + K + +
Sbjct: 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342
Query: 552 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 611
+A CL L +D+ V + + +K+ + R A +++G S L
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402
Query: 612 KKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--EPYVIQMLPLLLVAFS 667
K TL E + D + R+ A +CE L + Y+ +L L+
Sbjct: 403 KPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL- 460
Query: 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727
V C A SL + + + + A
Sbjct: 461 SAEPRVASNV-CWA---------------FSSLAEAAYE--------AADVADDQEEPAT 496
Query: 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PEIASLVPTLL- 780
LS IV KL E + +A + + ++KN P + ++
Sbjct: 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIME 556
Query: 781 -MGLTDPNDHTKYSLD-----ILLQTTFVNTVDAPSLALLVPIVHR-------------G 821
+ + S LQ+ T+ + +
Sbjct: 557 RLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616
Query: 822 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAI 880
S ++ A V + ++ + + Y+ P + L + +V A +
Sbjct: 617 STAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674
Query: 881 GSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYFEHILP 936
G L R + +++ LL+ L ++N + + ++ A+G F+ L
Sbjct: 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFKKYLE 733
Query: 937 DIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 995
++ +A V + YL + + + I+ GL + E+V +
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYL-----NELRESCLEAYTGIVQGLKGDQENVHPDVM 788
Query: 996 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039
LV+ L + D D + + L+GDL
Sbjct: 789 -----LVQPRVEFILSFIDHIAGDEDHTDG--VVACAAGLIGDL 825
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 381 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 440
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 441 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 492
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 493 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 544
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 545 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 591
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 592 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 640
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 641 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 695
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 696 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 753
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 754 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 813
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 870
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 871 EVRSVAARAIGSLIR 885
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 5e-11
Identities = 104/733 (14%), Positives = 231/733 (31%), Gaps = 111/733 (15%)
Query: 1126 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGL- 1184
T++ S + A + L + L + +L+ A R + +
Sbjct: 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--RVAAGLQIK 62
Query: 1185 ------SEVMASAGKSQLLSFMDELIPTIRT----ALCDSILEVRESAGLAFSTLFKSAG 1234
+ + + + L+ ++ L ++
Sbjct: 63 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIP 122
Query: 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 1294
+ E++P L+ + + +++ + + + + P L
Sbjct: 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-------------- 168
Query: 1295 GALAEVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AETVTLVIDEEGVE 1348
IL A++ M ++ +V+ A A E D+E
Sbjct: 169 -------------KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER 215
Query: 1349 SLVSELLKGVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 1403
+ +++ + R +A ++ +Y+ + Y+ + T+ + SD D
Sbjct: 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI--TIEAMKSDID 273
Query: 1404 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 1463
+ E + D + + + + P F A
Sbjct: 274 EVALQGI-------------EFWSNVCDEEMDLAIEASEAAEQGRP--PEHTSKFYAKGA 318
Query: 1464 LQPLLPIFLQGLISGSAE-------LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 1516
LQ L+PI Q L + A + L L + ++P P I+
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IVPHVLPFIKE 373
Query: 1517 IGDRFPWQVKSAILSTLSIIIRKGGIA-LKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 1575
W+ + A + I+ + LKP + Q T I+ ++D + VR +AA +G
Sbjct: 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433
Query: 1576 KLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 1635
++ +LL ++D + + ++G+ A V+S V +S L +
Sbjct: 434 RIC-----------ELLPEAAINDVYLAPLLQCLIEGL--SAEPRVASNV-CWAFSSLAE 479
Query: 1636 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 1695
Y D +S E + L E + R + ++
Sbjct: 480 AAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537
Query: 1696 HNPSAIS--MSPLFLSILDRLKSSLK--------DEKFPLREASTKALGRLLLHQIQSGP 1745
++ + L I++RL+ L+ ++ + + L +
Sbjct: 538 NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH 597
Query: 1746 ANTTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC 1802
+ + D++ + + + S V+ AL A+ ++ + + ++ F P L
Sbjct: 598 QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG 657
Query: 1803 LKDGSTP-VRLAA 1814
LK+ + V LAA
Sbjct: 658 LKNYAEYQVCLAA 670
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 8e-15
Identities = 82/548 (14%), Positives = 157/548 (28%), Gaps = 91/548 (16%)
Query: 1313 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 1364
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 72
Query: 1365 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
R +A + + L + I L+ +L + + A L ++
Sbjct: 73 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 128
Query: 1423 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 1482
Q +R A GG L + L + +
Sbjct: 129 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 156
Query: 1483 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---- 1538
L L E L L+ I+ ++ L ++
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216
Query: 1539 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV---DPLVGDLLSSL 1595
K I + L L D ++ + + L LS +T+ + L+G L+ L
Sbjct: 217 KPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 272
Query: 1596 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAASILG 1653
D + L + + K+ ++ L V D + + A L
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332
Query: 1654 IMSQCMEDGQL-------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM--- 1703
++ ++ ++ L ++ L PS + + L P+ +
Sbjct: 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 392
Query: 1704 ---SPLFLSILDR------------LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 1748
P + +L R E + E G LH + N
Sbjct: 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG--ALHILARDVHNR 450
Query: 1749 TVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDG 1806
V+ + V L+ ++R A L +A+ +A + L E L
Sbjct: 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 510
Query: 1807 STPVRLAA 1814
+ V A
Sbjct: 511 NEGVATYA 518
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 68/539 (12%), Positives = 160/539 (29%), Gaps = 80/539 (14%)
Query: 1204 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDT-- 1257
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 1258 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 1310
L L +P LV + P+ + +A+ L + +
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 1311 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 1358
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 193
Query: 1359 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 194 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 250
Query: 1417 VVASVPKEVQPS-YIKVIRDAISTSRDKERRK--------KKGGPILIPGFCLPKALQPL 1467
+ + K+ + + + + C ++ L
Sbjct: 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 1468 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRIIGDRFPWQ 1524
+ L+ ++ E A L L E + + + + +++++ W
Sbjct: 311 VRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368
Query: 1525 VKSAILSTLSI----------IIRKGGIALKPFLPQLQTT---------------FIKCL 1559
+ A + + + +G I P L QL
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGAI---PRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 1560 QDSTRTVRSSAALALGKLSALSTRVDPLVGD-----LLSSLQVSDAGIREAILTALKGVL 1614
+ AL L+ + G + L I+ L L
Sbjct: 426 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL-CEL 484
Query: 1615 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 1673
++ + + L +L++ ++ V AA++L MS+ L EL +
Sbjct: 485 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 8e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 521 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 562
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 563 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 589
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 590 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 645
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 646 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 699
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 700 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 758
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 759 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 816
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 876
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 877 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 920
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 72/547 (13%), Positives = 162/547 (29%), Gaps = 101/547 (18%)
Query: 1123 LMNTLISSLASSSS-ERRQVAGRALGEL---------VRKLGERVLPSIIPILSRGLKDP 1172
+++ ++ ++ +++ E + L L + K G IP L + L P
Sbjct: 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG------GIPALVKMLGSP 110
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL-FK 1231
S L ++ +++ + + + L + ++ L +
Sbjct: 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170
Query: 1232 SAGMQAI---DEIVPTLLHALEDDQTSD------TALDGLKQILSVRTTAVLPHILPKLV 1282
+ + I L++ + L L S + V + L
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 1283 HLPLSAFN----AHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQ--------S 1329
L+ + + L L ++ + +L L+ +G DD++V +
Sbjct: 231 LH-LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 1330 LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF----YKNSKLYLV 1385
L + +V G+E+LV +L+ ++ I + + + +
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 1386 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA--------I 1437
+ ++ LL + A L R +A P+ +R+ +
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-----CPANHAPLREQGAIPRLVQL 402
Query: 1438 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 1497
++ +++ F ++ E+ E L L
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRME---------------EIVEGCTGALHILARDV 447
Query: 1498 SEQSL--KEFVIPITGPLIRIIGDRFPWQVKSA--ILSTLS-------IIIRKGGIALKP 1546
+ + IP ++++ + A +L L+ I +G A
Sbjct: 448 HNRIVIRGLNTIP---LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP-- 502
Query: 1547 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA--LSTRVDPLVGDLLSSLQVSD-AGIR 1603
+ L V + AA L ++S L +L SSL ++
Sbjct: 503 --------LTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWN 554
Query: 1604 EAILTAL 1610
E L
Sbjct: 555 ETADLGL 561
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 46/255 (18%)
Query: 1562 STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 1621
S + A+ G + D + LL ++ R + L +
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDDELFRLLDD---HNSLKRISSARVL-QLRGGQ---- 53
Query: 1622 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM--SQCMEDGQLADLLQELLNLASSPS 1679
+ + + R A ILG + + ED L LN S
Sbjct: 54 ------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKS 104
Query: 1680 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739
R ++ A + NP I+++ + + D+ +R A+ A+ +
Sbjct: 105 ACVRATAIESTAQRCKKNPIYS------PKIVEQSQITAFDKSTNVRRATAFAISVI--- 155
Query: 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 1799
N + +L ++ L D + +VR A A+ N
Sbjct: 156 -------NDKATIPLL---INLLKDPNGDVRNWAAFAININKYDNSDIR--------DCF 197
Query: 1800 AECLKDGSTPVRLAA 1814
E L+D + VR+ A
Sbjct: 198 VEMLQDKNEEVRIEA 212
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 44/336 (13%), Positives = 86/336 (25%), Gaps = 69/336 (20%)
Query: 1483 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542
+ +A+ G K+ L R++ D + + L
Sbjct: 7 KRKASKEYGLY------NQCKKLNDD---ELFRLLDDHN-SLKRISSARVL------QLR 50
Query: 1543 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAG 1601
+ + I+ D R A LG++ D + L + A
Sbjct: 51 GGQDAVRLA----IEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSAC 106
Query: 1602 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661
+R + + K V+ + + +VR + A + + D
Sbjct: 107 VRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAIS----VIND 157
Query: 1662 GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE 1721
LL LL P+ R+ + N D L+D+
Sbjct: 158 KATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIR----------DCFVEMLQDK 204
Query: 1722 KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 1781
+R + L V+ +L L + V + A +
Sbjct: 205 NEEVRIEAIIGLSYR----------KDKRVLSVL---CDELKKN--TVYDDIIEAAGEL- 248
Query: 1782 KANPSAIMVHVALFGPALAECLKDGSTP-VRLAAER 1816
+ + + P L L + +A
Sbjct: 249 -GDKTLL--------PVLDTMLYKFDDNEIITSAID 275
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 973 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1093 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1152
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1153 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1212
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1213 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 1272
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 1273 VLPHIL 1278
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 729 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 788
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 789 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 847
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 907
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 908 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1027
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1028 IRQSSVELLG 1037
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 47/323 (14%), Positives = 99/323 (30%), Gaps = 53/323 (16%)
Query: 1332 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 1391
++A++ L + + EL + + D+ + R SSA ++ +
Sbjct: 8 RKASKEYGLYNQCK--KLNDDELFRLLDDHNSLKRISSARVLQLR----------GGQDA 55
Query: 1392 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 1451
+ I SD + L ++ + K+ + + ++ + + R
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKSACVRATAIE 113
Query: 1452 PILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 1511
P ++ S +R A + + + IP
Sbjct: 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI--------NDKATIP--- 162
Query: 1512 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAA 1571
LI ++ D V++ ++ I + ++ ++ LQD VR A
Sbjct: 163 LLINLLKDP-NGDVRNWAAFAIN-INKYDNSDIRDCF-------VEMLQDKNEEVRIEAI 213
Query: 1572 LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 1631
+ L + L +L + + I+ A G L +
Sbjct: 214 IGLSYRKDKRV-LSVLCDEL------KKNTVYDDIIEAA-GELGDK----------TLLP 255
Query: 1632 VLKDLVYHDDD-HVRVSAASILG 1653
VL ++Y DD + SA L
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 44/293 (15%)
Query: 1127 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1186
L L +S +R + R L G + + D + RR L +
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 1187 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 1246
+ + AL D VR +A + + K + + +IV
Sbjct: 81 IKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-PKIVEQSQ 134
Query: 1247 HALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG 1304
D T+ + I T +L ++L K + + + A A+ + +
Sbjct: 135 ITAFDKSTNVRRATAFAISVINDKATIPLLINLL-KDPNGDVRNWAAFAIN-INKYDNS- 191
Query: 1305 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 1364
I + + D + +V+ EA ++ D+ + L EL + +
Sbjct: 192 ------DIRDCFVEMLQDKNEEVR---IEAIIGLSYRKDKRVLSVLCDEL------KKNT 236
Query: 1365 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV-AAAWEALSR 1416
+ G ++ L +L D + +A + L R
Sbjct: 237 VYDDIIEAAGEL----------GDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 35/284 (12%), Positives = 81/284 (28%), Gaps = 66/284 (23%)
Query: 1134 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1193
S++ +++ A + G L + L R L D ++ +R L
Sbjct: 2 SNTYQKRKASKEYG-----LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG---- 52
Query: 1194 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253
+ + D R+ + + D + L + +D+
Sbjct: 53 -------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE--DNVFNILNNMALNDK 103
Query: 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 1313
++ VR TA + + + I+
Sbjct: 104 SAC-----------VRATA------------------IESTAQRCKKNP----IYSPKIV 130
Query: 1314 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 1373
D +V+ + A ++++ D+ + L++ L D +R +A+ I
Sbjct: 131 EQSQITAFDKSTNVR---RATAFAISVINDKATIPLLINLL----KDPNGDVRNWAAFAI 183
Query: 1374 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 1417
++ ++ + +L D + A LS
Sbjct: 184 NINKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 40/287 (13%), Positives = 84/287 (29%), Gaps = 53/287 (18%)
Query: 1293 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 1352
+ L G + + D + + A + + + E V
Sbjct: 43 SARVLQLRGGQ-------DAVRLAIEFCSDKNYIRRD---IGAFILGQIKICKKCEDNVF 92
Query: 1353 ELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410
+L + D A +R ++ K + +Y +P ++ + D + A
Sbjct: 93 NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRAT 148
Query: 1411 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 1470
A+S + + I ++ + + + + R I I + +
Sbjct: 149 AFAISVIND-------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFV-- 198
Query: 1471 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAIL 1530
+ L + E+R +A +GL ++ L L + V I+
Sbjct: 199 --EMLQDKNEEVRIEAIIGLSYR---KDKRVLS--------VLCDELKKN---TVYDDII 242
Query: 1531 STLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGK 1576
G + K LP L L + +SA L +
Sbjct: 243 EAA------GELGDKTLLPVLD----TMLYKFDDNEIITSAIDKLKR 279
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 379 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 438
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 439 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 496
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 497 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 556
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 557 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 616
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 676
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 677 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-14
Identities = 94/622 (15%), Positives = 179/622 (28%), Gaps = 107/622 (17%)
Query: 1251 DDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 1307
D Q + T ++ + T +P H A L +N+
Sbjct: 82 DGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINY 141
Query: 1308 HLGTI-----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 1354
+P L + D+D V L+K+ A ++ + V ++V +
Sbjct: 142 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 201
Query: 1355 LKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412
N R ++ + + L + I L+ +L + + A
Sbjct: 202 QNT---NDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAIT 256
Query: 1413 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 1472
L ++ Q +R A GG L +
Sbjct: 257 TLHNLLLH-----QEGAKMAVRLA-------------GG----------------LQKMV 282
Query: 1473 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK---SAI 1529
L + + L L E L L+ I+ ++ S +
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Query: 1530 LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 1582
L LS+ I+ GG+ L L D ++ + + L LS +T
Sbjct: 343 LKVLSVCSSNKPAIVEAGGM---QALGLH-------LTDPSQRLVQNCLWTLRNLSDAAT 392
Query: 1583 RV---DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 1639
+ + L+G L+ L D + L + + K+ ++ L V
Sbjct: 393 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452
Query: 1640 DDDH--VRVSAASILGIMSQCMEDGQLA-------DLLQELLNLASSPSWAARHGSVLVF 1690
D + A L ++ +D ++A L ++ L PS + +
Sbjct: 453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512
Query: 1691 ATFLRHNPSAISM------SPLFLSILDR----------LKSSLKDEKFPLREASTKALG 1734
L P+ + P + +L R + + + +R
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572
Query: 1735 RLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 1792
LH + N V+ + V L+ ++R A L +A+ +A +
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632
Query: 1793 ALFGPALAECLKDGSTPVRLAA 1814
L E L + V A
Sbjct: 633 EGATAPLTELLHSRNEGVATYA 654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 42/287 (14%), Positives = 96/287 (33%), Gaps = 43/287 (14%)
Query: 1555 FIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSDAGIRE 1604
K L D + V + AA+ + +LS V +V + ++ +D
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVETAR 211
Query: 1605 AILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVYHDDDHVRVSAASILGIMSQCM 1659
L + S + ++ L +++ D V A + L +
Sbjct: 212 CTSGTLHNL------SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265
Query: 1660 EDGQL----ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS---AISMSPLFLSILD 1712
E ++ A LQ+++ L + + + N I S ++++
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 325
Query: 1713 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVR 1770
+++ ++ L +++ L L + +N +V+ + ++ L D S +
Sbjct: 326 IMRTYTYEK---LLWTTSRVLKVLSVC-----SSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 1771 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERC 1817
+ L L++++ A + L L + L V A
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLL--GTLVQLLGSDDINVVTCAAGI 422
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 5e-07
Identities = 89/601 (14%), Positives = 178/601 (29%), Gaps = 124/601 (20%)
Query: 1204 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDT-- 1257
IP + L D V A + L K + ++V ++ +++ +T
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211
Query: 1258 ----ALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGLNFHLG 1310
L L +P LV++ P+ + HA+ L + +
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271
Query: 1311 TI----LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGV 1358
L +++ + ++ LA E+ +++ G ++LV +++
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRT- 329
Query: 1359 GDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
+ +++ ++ ++K +V+ + L + L+D V L
Sbjct: 330 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA--GGMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 1417 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 1476
+ + K+ ++ LL +Q L
Sbjct: 387 LSDAATKQE-------------------------------------GMEGLLGTLVQLLG 409
Query: 1477 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITG--PLIRIIGDRFP-WQVKSAILSTL 1533
S + AA L L + K V + G L+R + + + L
Sbjct: 410 SDDINVVTCAAGILSNL--TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 1534 SIIIRKGG--------IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-- 1583
+ + + L LP + +K L + A + L + AL
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVV----VKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 1584 --------VDPLVGDLLSS---------------LQVSDAGIREAILTALKGVLKHAGKS 1620
+ LV LL Q + E I+ A G L +
Sbjct: 524 APLREQGAIPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582
Query: 1621 VSSAVKIR---VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL---ADLLQELLNL 1674
+ + + IR + L+Y ++++ AA +L ++Q E + L L
Sbjct: 583 IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 1675 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKAL 1733
S + + V P + L SSL + E E L
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYKK-----RLSVELTSSLFRTEPMTWNETGDLGL 697
Query: 1734 G 1734
Sbjct: 698 D 698
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-14
Identities = 80/553 (14%), Positives = 155/553 (28%), Gaps = 101/553 (18%)
Query: 1313 LPALLSAMGDDDMDVQS--------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 1364
+P L + D+D V + L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT---NDVE 75
Query: 1365 IRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
R +A + + L + I L+ +L + + A L ++
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH-- 131
Query: 1423 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 1482
Q +R A GG L + L + +
Sbjct: 132 ---QEGAKMAVRLA-------------GG----------------LQKMVALLNKTNVKF 159
Query: 1483 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---- 1538
L L E L L+ I+ ++ L ++
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219
Query: 1539 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR---VDPLVGDLLSSL 1595
K I + L L D ++ + + L LS +T+ ++ L+G L+ L
Sbjct: 220 KPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275
Query: 1596 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH--VRVSAASILG 1653
D + L + + K+ ++ L V D + A L
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 1654 IMSQCMEDGQL-------ADLLQELLNLASSPS--------WAA---------------R 1683
++ ++ ++ L ++ L PS
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 1684 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS 1743
G++ L + ++ E+ + E T AL L
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARD---- 449
Query: 1744 GPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 1801
N V+ + V L+ ++R A L +A+ +A + L E
Sbjct: 450 -VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508
Query: 1802 CLKDGSTPVRLAA 1814
L + V A
Sbjct: 509 LLHSRNEGVATYA 521
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 564 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 620
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 621 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 677
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 8e-12
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 682 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 742 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 794
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 795 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 3e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 956 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1015
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1016 AVEDGIFNDNWRIRQSSVELLGDLL 1040
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 6e-05
Identities = 33/191 (17%), Positives = 68/191 (35%), Gaps = 15/191 (7%)
Query: 1226 FSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHILPKLVHL 1284
F FK + A+D L+ + S + D L + ++R P L K++
Sbjct: 56 FHKDFKQ-HLAALDS----LVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE- 109
Query: 1285 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 1344
+ + + P + +P LL G+ ++++ ++ ++ V+
Sbjct: 110 ----LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163
Query: 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS 1404
G + LL + A R +I Y+ N+ + + + T+ + D D
Sbjct: 164 -GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDV 221
Query: 1405 TTVAAAWEALS 1415
AA L
Sbjct: 222 NVRNAAINVLV 232
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 784 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 844 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 901
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 902 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 960 LPRSLGVQFQNYLQQVLPAILDGLAD 985
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 505 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 563
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 564 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 621
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 622 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 681
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 682 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 739
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 740 KLTEVL 745
K ++
Sbjct: 252 KDKSLV 257
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 5e-14
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 947
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 948 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1002
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1003 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1049
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1050 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1109 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1165
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1166 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1225
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1226 FSTLFKSAGMQAI-DEIVPTLLHAL 1249
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 3e-12
Identities = 69/475 (14%), Positives = 147/475 (30%), Gaps = 38/475 (8%)
Query: 1309 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 1368
L TIL +S D A++ E + + L L N R +
Sbjct: 3 LITILEKTVSP----DRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVA 56
Query: 1369 SAYLI------------GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
+ I + + + + + ++ L +A+
Sbjct: 57 AGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 116
Query: 1417 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPI 1470
A +P P I + ++ E K+ + I L +L
Sbjct: 117 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176
Query: 1471 FLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 1528
+QG+ S ++ A L +E T KE ++ +V+ A
Sbjct: 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236
Query: 1529 ILSTLSIIIRKGGIALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 1587
L L I+ ++ ++ L I+ ++ V + +
Sbjct: 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296
Query: 1588 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 1647
+ + + + AL+ ++ + + + + DD + +
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKA 347
Query: 1648 AASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF 1707
A L +++ C ED + +L + +P W R +V+ F L P + PL
Sbjct: 348 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKPLV 406
Query: 1708 LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 1762
+ + L +KD +R+ + +GR + + N + +L ++ L
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGR-ICELLPEAAINDVYLAPLLQCLIEGL 460
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 6e-08
Identities = 79/457 (17%), Positives = 140/457 (30%), Gaps = 74/457 (16%)
Query: 1195 QLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 1248
L E +PT L + R +AGL S + L
Sbjct: 24 FLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83
Query: 1249 LEDDQTS--DTALDGLKQILSVRTTAVL---------------PHILPKLVHLPLS---- 1287
+ + + L L ++A P ++P+LV +
Sbjct: 84 DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST 143
Query: 1288 -AFNAHALGALA----EVAGPGLNFHLGTILPALLSAMGDDDM--DVQSLAKEA----AE 1336
L A+ ++ L IL A++ M ++ +V+ A A E
Sbjct: 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203
Query: 1337 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAY--LIGYFYKNSKLYLVDEAPNMIST 1394
D+E + +++ + R +A L+ + P + +
Sbjct: 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263
Query: 1395 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 1454
I + E S V + AI S E+ + P
Sbjct: 264 TIEAMKSDIDEVALQGIEFWSNVCDEE-----------MDLAIEASEAAEQGRP---PEH 309
Query: 1455 IPGFCLPKALQPLLPIFLQGLISGSAELREQ-------AALGLGELIEVTSEQSLKEFVI 1507
F ALQ L+PI Q L + A + L L + ++
Sbjct: 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-----IV 364
Query: 1508 PITGPLI-RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 1566
P P I I + +A+++ I+ LKP + Q T I+ ++D + V
Sbjct: 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 424
Query: 1567 RSSAALALGKLSAL-------STRVDPLVGDLLSSLQ 1596
R +AA +G++ L + PL+ L+ L
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 55/452 (12%), Positives = 126/452 (27%), Gaps = 95/452 (21%)
Query: 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTLK------------EIMPVLMNTLISSLASSS 1135
+ S R AA K + + +K + N ++ +L + +
Sbjct: 44 LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET 103
Query: 1136 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS--RRQGVCIGLSEVMASAGK 1193
+ G ++ P +IP L + +P+++ ++ + +
Sbjct: 104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP 163
Query: 1194 SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL-- 1249
QL +E++ I + V+ +A A + E + +
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223
Query: 1250 -----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-------ALGAL 1297
D + AL L +I+S+ + ++ P L + + A + +
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283
Query: 1298 AEVAGPGL------------------------NFHLGTILPALLSAMGDDDMD------- 1326
+ V + L ++P L + D +
Sbjct: 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Query: 1327 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN-SKLYLV 1385
A + +++ V ++ + + + + R ++ G + L
Sbjct: 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 403
Query: 1386 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445
+ TLI L+ D A + R+ +P+
Sbjct: 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN------------------ 445
Query: 1446 RKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 1477
L PLL ++GL +
Sbjct: 446 ---------------DVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 5e-07
Identities = 61/490 (12%), Positives = 147/490 (30%), Gaps = 81/490 (16%)
Query: 542 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 601
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 602 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 661
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 719
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 720 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 775
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 776 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 828
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 829 TKKKAAQIVGNMCSLVTE-------------PKDMIP--YIGLLLPEVKKVLVDPIPE-- 871
+ + N+C + P + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 872 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 923 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 974
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 975 VLPAILDGLA 984
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-07
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 628 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 684
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 685 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 739
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 740 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 774
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 775 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 829 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 889 E-----ENFPDLVSWLLDALKS 905
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 55/354 (15%), Positives = 128/354 (36%), Gaps = 45/354 (12%)
Query: 372 LFKALSHSN--YNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 428
L +++ N +++ + EA+ + P+ +Q + + + I+ + + +
Sbjct: 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV-- 190
Query: 429 LGRQGIALALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKH 484
+ AL ++ + + D F+ + A + VR L + I+ +
Sbjct: 191 --KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 485 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 544
+ + + P + A + ++ +G+ ++ V D+ +D
Sbjct: 249 YQYMETYMGPALFAITIE-AMKSDIDEVALQGIEFWS---------------NVCDEEMD 292
Query: 545 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE------RRGAAFG 598
+ SEA ++ + + LV L L K D+ + + A
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351
Query: 599 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQ 657
L + + + ++E + + + R+ A++AF C+ E +P VIQ
Sbjct: 352 LMLLATCCEDDIVPH--VLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 658 MLPLLLVAFSDQVVAVREAAECAARAMMS------QLSAQGVKLVLPSLLKGLE 705
+P L+ D V VR+ A + ++ + +L L++GL
Sbjct: 409 AMPTLIELMKDPSVVVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 7e-14
Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 35/282 (12%)
Query: 1547 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 1606
F P + + L R + A L L V + S + + E
Sbjct: 59 FTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQF 118
Query: 1607 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---Q 1663
A +R + L+ + + + A S I +++
Sbjct: 119 NVQ-------APSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIEN 171
Query: 1664 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILD-RLKSSLKDEK 1722
+ D +++ + S W RHG+ L FA + + S L ++ L +K
Sbjct: 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDK 231
Query: 1723 F----------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 1772
F P+R+A+ L R+ + DI+ +V L +V+
Sbjct: 232 FNDFVDDRTVAPVRDAAAYLLSRIYPLIGPN---------DIIEQLVGFLDSGDWQVQFS 282
Query: 1773 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 1814
L AL + + L L ++L +
Sbjct: 283 GLIALGYLK-----EFVEDKDGLCRKLVSLLSSPDEDIKLLS 319
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 7e-06
Identities = 64/436 (14%), Positives = 125/436 (28%), Gaps = 69/436 (15%)
Query: 1330 LAKEAAETVTLVIDEEGVES--LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL--- 1384
L + + I E + ++ + + + + RR+ A ++ KL
Sbjct: 41 LKGYTTDELVSQIKEYVDFTPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFK 100
Query: 1385 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 1444
++ + L + + + + + V+ +++ I + +
Sbjct: 101 IEYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIK 160
Query: 1445 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 1504
R K PI + + L+S R A L + +
Sbjct: 161 RHKVDERPI--------ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ 212
Query: 1505 FVIP--ITGPLIRIIG-DRF----------PWQVKSAILSTLSIIIRKGGIALKPFLPQL 1551
+ + + I+ D+F P V+ A LS I I + QL
Sbjct: 213 IRVDSKLFSKIYEILVTDKFNDFVDDRTVAP--VRDAAAYLLSRIYPL--IGPNDIIEQL 268
Query: 1552 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 1611
L V+ S +ALG L D L L+S L D I+ L
Sbjct: 269 VGF----LDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLC 324
Query: 1612 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 1671
+ V + ++ + VS S L ++++ + + E
Sbjct: 325 HFP-------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPELSIPPER 376
Query: 1672 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----------LKDE 1721
L + S L+++ L L +E
Sbjct: 377 LK---------------DIFPCFTSPVPEVRTS--ILNMVKNLSEESIDFLVAEVVLIEE 419
Query: 1722 KFPLREASTKALGRLL 1737
K +RE + K L +
Sbjct: 420 KDEIREMAIKLLKKRR 435
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 5e-05
Identities = 56/458 (12%), Positives = 127/458 (27%), Gaps = 89/458 (19%)
Query: 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 791
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 792 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 851
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 905
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 906 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 955
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 956 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1015
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1016 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1075
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1076 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1130
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1131 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1167
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGS 452
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-04
Identities = 39/250 (15%), Positives = 76/250 (30%), Gaps = 37/250 (14%)
Query: 1194 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-----MQAIDEIVPT-LLH 1247
+L F +++ L R A LAF+ +F +D + + +
Sbjct: 170 ENVLDFFEQIS----DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYE 225
Query: 1248 ALEDDQTSDTALDGLKQILSVRTTA------VLPHILPKLVHLPLSAFNAH--------- 1292
L D+ +D D + VR A + P I P + L F
Sbjct: 226 ILVTDKFNDFVDDRT--VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSG 283
Query: 1293 --ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 1350
ALG L E + L+S + D D++ L+ E + + V
Sbjct: 284 LIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEK 338
Query: 1351 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410
+ ++ S S+ L+ Y+ + + P + + + +
Sbjct: 339 CWKNIESEELISVSK-TSNLSLLTKIYRENPELSIP--PERLKDIFPCFTSPVPEVRTSI 395
Query: 1411 WEALSRVVAS 1420
+ +
Sbjct: 396 LNMVKNLSEE 405
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 4e-12
Identities = 83/697 (11%), Positives = 227/697 (32%), Gaps = 85/697 (12%)
Query: 870 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 927
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 928 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 986
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 987 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1047 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1096
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1097 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1156
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1157 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1214
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1215 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DDQTSDTALDGLKQI 1265
I + + ++ G S L ++ + ++ + LE ++ + + + I
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI 640
Query: 1266 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 1325
L + + + + + ++ +LS +D
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700
Query: 1326 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 1385
V+++ ++V ++D+ +V +L + +G ++I ++
Sbjct: 701 VVEAVCAIFEKSVKTLLDD--FAPMVPQLCEMLGRMYSTIPQA----------------- 741
Query: 1386 DEAPNMISTLIVLLSDSDST--TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 1443
A ++ L+ + + + + A + ++ V ++ ++ + ++ +
Sbjct: 742 -SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800
Query: 1444 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSL 1502
+RK P L C ++ + + L A + + EL+ E +S+
Sbjct: 801 LKRK----PDLF--LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESV 854
Query: 1503 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 1539
+ V L+ + + Q +++ + I+
Sbjct: 855 GKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFA 891
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240 | Back alignment and structure |
|---|
Score = 65.7 bits (159), Expect = 1e-11
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 20/223 (8%)
Query: 1568 SSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 1627
SS + G A T + + I K + A S
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGE 70
Query: 1628 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSV 1687
+ + D VR+ A + G +S+ L+ ++ +W +
Sbjct: 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYLSK-----DKEILIFMRDEVSKDNNWRVQEVLA 125
Query: 1688 LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 1747
F F + + L + LK R A+T+ L N
Sbjct: 126 KAFDEFCKK--------IEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKEN 175
Query: 1748 TTVVVDILASVVSALHDDSSE-VRRRALSALKSVAKANPSAIM 1789
+ +A L +D SE VR+ +AL+ ++K P +
Sbjct: 176 PNEAIRRIA----DLKEDVSEYVRKSVGNALRDISKKFPDLVK 214
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 48/230 (20%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 25 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 78
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 1675
R L + +D VR SAA LG + ++ L+
Sbjct: 79 DE----------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKAL 121
Query: 1676 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 1735
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 122 KDEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 169
Query: 1736 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 1785
+ G + A++ + R+ A++ L++ N
Sbjct: 170 I------GGER-------VRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 54/239 (22%)
Query: 1579 ALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 1637
A R DP V + +LQ +R A AL G + R L +
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------RAVEPLIKAL 59
Query: 1638 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHN 1697
+D VR +AA LG + ++ L+ R + + +
Sbjct: 60 KDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAVALGQI--GD 110
Query: 1698 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILAS 1757
A+ + L +LKDE + +R A+ ALG + V+ L
Sbjct: 111 ERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPL-- 148
Query: 1758 VVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 1816
+ AL D+ VR+ A AL + A+ + + G+ R A
Sbjct: 149 -IKALKDEDGWVRQSAADALGEIG--GERVR--------AAMEKLAETGTGFARKVAVN 196
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 716
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 717 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 776
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 777 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 831
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 832 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 883
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 42/206 (20%)
Query: 1468 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKS 1527
+ ++++ L S +R AA LG++ E++++ PLI+ + D W V+
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDEDAW-VRR 68
Query: 1528 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL 1587
A L G I + + L IK L+D VR SAA+ALG++ +
Sbjct: 69 AAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI-----GDERA 113
Query: 1588 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 1647
V L+ +L+ D +R A AL G + R L + +D VR S
Sbjct: 114 VEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDEDGWVRQS 162
Query: 1648 AASILGIMSQCMEDGQLADLLQELLN 1673
AA LG + ++ +++L
Sbjct: 163 AADALG----EIGGERVRAAMEKLAE 184
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 594
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 595 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 714
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 715 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 973 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1093 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1151
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1152 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1186
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 973 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1093 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1149
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 38/226 (16%)
Query: 1151 RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1210
R P + + + L+D S R+ L ++ + + + A
Sbjct: 10 AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKA 58
Query: 1211 LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSV 1268
L D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 59 LKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI--- 108
Query: 1269 RTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQ 1328
+ ++ L A AL E+ + L+ A+ D+D V+
Sbjct: 109 GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWVR 160
Query: 1329 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 1374
A +A + E G E + + + K R+ + +
Sbjct: 161 QSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 199
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 33/134 (24%)
Query: 1681 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740
A H A LR +P + + +L+D+ + +R A+ ALG++
Sbjct: 1 AWSHPQFEKAAAPLRADPEKV----------EMYIKNLQDDSYYVRRAAAYALGKI---- 46
Query: 1741 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800
V+ L + AL D+ + VRR A AL + + A+ L
Sbjct: 47 ------GDERAVEPL---IKALKDEDAWVRRAAADALGQI--GDERAV--------EPLI 87
Query: 1801 ECLKDGSTPVRLAA 1814
+ LKD VR +A
Sbjct: 88 KALKDEDGWVRQSA 101
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 37/217 (17%)
Query: 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTAL 1259
E + L D VR +A A G + V L+ AL+D+ A
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYAL-------GKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
D L QI + ++ L A AL ++ + L+ A
Sbjct: 72 DALGQI---GDERAVEPLIKALKD-EDGWVRQSAAVALGQIGDE-------RAVEPLIKA 120
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
+ D+D V+ A A + G E V L+K + D +R+S+A +G
Sbjct: 121 LKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWVRQSAADALGEI--- 170
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416
+ + + L A L
Sbjct: 171 -------GGERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 735 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 794
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 795 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 849
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 909
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 910 VERSGAAQGLSEV 922
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 698 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 753
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 754 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 805
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 863
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 864 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 905
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 857 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 910
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 911 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 962
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 963 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 6e-09
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 580 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 635
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 636 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 693
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 694 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 745
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 746 TDTHPKVQSAGQTAL 760
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 11/199 (5%)
Query: 1661 DGQLADLLQELLN-LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 1719
++LL + + + A + + + L K
Sbjct: 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK 114
Query: 1720 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS---- 1775
++K + EA KAL L + + A++ D+L ++ + + ++R
Sbjct: 115 EKKPSVIEAIRKAL--LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172
Query: 1776 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQ 1835
++K + P + + + D +R ++ G
Sbjct: 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF-GMNTF---V 228
Query: 1836 KFITGLDARRLSKFPEHSD 1854
K + LD + K E
Sbjct: 229 KTLEHLDNLKRKKIEETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1145
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1146 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1198
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1199 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 1245
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 48/222 (21%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
IK LQD + VR +AA ALGK+ + V L+ +L+ DA +R A AL G +
Sbjct: 20 IKNLQDDSYYVRRAAAYALGKI-----GDERAVEPLIKALKDEDAWVRRAAADAL-GQIG 73
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 1675
R L + +D VR SAA LG + D + + L + L
Sbjct: 74 DE----------RAVEPLIKALKDEDGWVRQSAAVALGQIG----DERAVEPLIKALK-- 117
Query: 1676 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 1735
W R + + A+ + L +LKDE +R+++ ALG
Sbjct: 118 -DEDWFVRIAAAFALGEI--GDERAV----------EPLIKALKDEDGWVRQSAADALGE 164
Query: 1736 LLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777
+ G + A++ + R+ A++ L
Sbjct: 165 I------GGER-------VRAAMEKLAETGTGFARKVAVNYL 193
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 46/248 (18%), Positives = 78/248 (31%), Gaps = 60/248 (24%)
Query: 1570 AALALGKLSALSTRVDP-LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628
+ + DP V + +LQ +R A AL G + R
Sbjct: 3 GSHHHHHHT------DPEKVEMYIKNLQDDSYYVRRAAAYAL-GKIGDE----------R 45
Query: 1629 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 1688
L + +D VR +AA LG + ++ L+ R + +
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 1689 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 1748
+ A+ + L +LKDE + +R A+ ALG +
Sbjct: 99 ALGQI--GDERAV----------EPLIKALKDEDWFVRIAAAFALGEI----------GD 136
Query: 1749 TVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGST 1808
V+ L + AL D+ VR+ A AL + A+ + + G+
Sbjct: 137 ERAVEPL---IKALKDEDGWVRQSAADALGEI--GGERVR--------AAMEKLAETGTG 183
Query: 1809 PVRLAAER 1816
R A
Sbjct: 184 FARKVAVN 191
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 647 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 706
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 707 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 767 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 821
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 822 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 881
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 882 SL 883
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 35/181 (19%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
IK L+D VR +AA ALG++ + V L+ +L+ D +R++ AL G +
Sbjct: 51 IKALKDEDAWVRRAAADALGQIGD-----ERAVEPLIKALKDEDGWVRQSAAVAL-GQIG 104
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 1675
R L + +D VR++AA LG + ++ L+
Sbjct: 105 DE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKAL 147
Query: 1676 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR 1735
R + ++ + R+ + L
Sbjct: 148 KDEDGWVRQSAADALGEI--GGERVR----------AAMEKLAETGTGFARKVAVNYLET 195
Query: 1736 L 1736
Sbjct: 196 H 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 49/224 (21%)
Query: 1461 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 1520
P+ ++ + + L S +R AA LG++ E++++ PLI+ + D
Sbjct: 13 PEKVEMYI----KNLQDDSYYVRRAAAYALGKI---GDERAVE--------PLIKALKDE 57
Query: 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 1580
W V+ A L G I + + L IK L+D VR SAA+ALG++
Sbjct: 58 DAW-VRRAAADAL------GQIGDERAVEPL----IKALKDEDGWVRQSAAVALGQI--- 103
Query: 1581 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 1640
+ V L+ +L+ D +R A AL G + R L + +
Sbjct: 104 --GDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDE----------RAVEPLIKALKDE 150
Query: 1641 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 1684
D VR SAA LG + ++ +++L + + AR
Sbjct: 151 DGWVRQSAADALG----EIGGERVRAAMEKLAE---TGTGFARK 187
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 539 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 596
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 597 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 656
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 716
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 717 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 974 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1033
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1034 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1093
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1094 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1152
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1153 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1186
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 918 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1038 DL 1039
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 54/289 (18%), Positives = 87/289 (30%), Gaps = 91/289 (31%)
Query: 1293 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 1352
P + + + DD V+ AA + + DE VE L+
Sbjct: 3 GSHHHHHHTDPE-------KVEMYIKNLQDDSYYVRR---AAAYALGKIGDERAVEPLIK 52
Query: 1353 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412
L D A +RR++A +G + LI L D D +A
Sbjct: 53 AL----KDEDAWVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAV 98
Query: 1413 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 1472
AL + I D +A++PL+
Sbjct: 99 ALGQ----------------IGD-------------------------ERAVEPLIKA-- 115
Query: 1473 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 1532
L +R AA LGE+ E++++ PLI+ + D V+ +
Sbjct: 116 --LKDEDWFVRIAAAFALGEI---GDERAVE--------PLIKALKDE-DGWVRQSAADA 161
Query: 1533 LSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 1581
L I GG ++ + K + T R A L +L
Sbjct: 162 LGEI---GGERVRAAM-------EKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 41/232 (17%)
Query: 995 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1054
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1055 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1115 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1173
L +I + LI +L R A ALGE+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDED 151
Query: 1174 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1225
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 38/227 (16%)
Query: 1150 VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1209
P + + + L+D S R+ L ++ + + +
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIK 52
Query: 1210 ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS 1267
AL D VR +A A G + V L+ AL+D+ +A L QI
Sbjct: 53 ALKDEDAWVRRAAADAL-------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI-- 103
Query: 1268 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDV 1327
+ ++ L A AL E+ + L+ A+ D+D V
Sbjct: 104 -GDERAVEPLIKALKD-EDWFVRIAAAFALGEIGDE-------RAVEPLIKALKDEDGWV 154
Query: 1328 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 1374
+ A +A + E G E + + + K R+ + +
Sbjct: 155 RQSAADA-------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 735 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 793
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 794 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 913
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 914 GAAQGLSEV 922
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 8e-11
Identities = 65/328 (19%), Positives = 111/328 (33%), Gaps = 28/328 (8%)
Query: 1122 VLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASR----R 1177
+M + +SS + + LG + G + I+
Sbjct: 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454
Query: 1178 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF-KSAGMQ 1236
G +G+ G + + S E+ ++ L + E+A L + +
Sbjct: 455 HGASLGI-------GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507
Query: 1237 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-PLSAFNAHALG 1295
AI ++ + T A+ GL I R I L L +
Sbjct: 508 AIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKMLASDESLLRYGGAFTI 566
Query: 1296 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 1355
ALA AG G N + L A+ D + DV+ A A V L+ D V +V L
Sbjct: 567 ALAY-AGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFV-LLRDYTTVPRIVQLLS 621
Query: 1356 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 1415
K + A +R +A+ +G L + I L L D AA ALS
Sbjct: 622 K---SHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALS 672
Query: 1416 RVVASVPKEVQPSYIKVIRDAISTSRDK 1443
++ +++ P + ++ +S +K
Sbjct: 673 MILIQQTEKLNPQVADINKNFLSVITNK 700
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-07
Identities = 70/424 (16%), Positives = 130/424 (30%), Gaps = 75/424 (17%)
Query: 1346 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 1405
S + L +G Q + ++ +G +K + + E +++ + S
Sbjct: 355 TDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGN----LLEGKKVMAPYLPGSRASSRF 410
Query: 1406 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGF-CLPKAL 1464
+ L + A ++ +I + TS D++ G L G + A
Sbjct: 411 IKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470
Query: 1465 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 1524
+ + L + SA E AALG+G L + + + + +
Sbjct: 471 IEVYEALKEVLYNDSATSGEAAALGMG-LCMLGTGKP------EAIHDMFTYSQET---- 519
Query: 1525 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSA-ALALGKLSALSTR 1583
R A LAL
Sbjct: 520 ------------------------------------QHGNITRGLAVGLALINYGR-QEL 542
Query: 1584 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
D L+ +L ++ +R + L +AG +SAVK +L V +D
Sbjct: 543 ADDLITKML---ASDESLLRYGGAFTI--ALAYAGTGNNSAVK----RLLHVAVSDSNDD 593
Query: 1644 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 1703
VR +A LG + + + + L+ S + R G+
Sbjct: 594 VRRAAVIALGFVLLRDYT----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--- 646
Query: 1704 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 1763
S +D L KD +R+A+ AL +L+ Q + + SV++ H
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701
Query: 1764 DDSS 1767
+
Sbjct: 702 QEGL 705
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 53/374 (14%), Positives = 101/374 (27%), Gaps = 52/374 (13%)
Query: 1457 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 1516
G ++ LP L + A LG + + + K P +
Sbjct: 353 GTTDNSFIKANLPW----LGKAQNWAKFTATASLGVIHKGNLLEGKKVMA-----PYLPG 403
Query: 1517 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576
+ ++ I G + + + A+L +G
Sbjct: 404 SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG- 462
Query: 1577 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 1636
L+A+ + + L L A EA + G+ + + YS
Sbjct: 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGM-GLCMLGTGKPEAIHDMFTYSQETQ- 520
Query: 1637 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRH 1696
+ R A + I E AD L + + +S R+G A
Sbjct: 521 ---HGNITRGLAVGLALINYGRQEL---ADDL--ITKMLASDESLLRYGGAFTIALAYAG 572
Query: 1697 NPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALG-----------RLLLHQIQSGP 1745
+ ++ L ++ D +R A+ ALG R++ +S
Sbjct: 573 TGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHN 625
Query: 1746 ANTTVVV--------------DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791
A+ + + D VR+ A+ AL + +
Sbjct: 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685
Query: 1792 VALFGPALAECLKD 1805
VA + +
Sbjct: 686 VADINKNFLSVITN 699
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 76/480 (15%), Positives = 160/480 (33%), Gaps = 99/480 (20%)
Query: 1329 SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 1388
++ A+ + + GV + S++++ + + S+ +DE
Sbjct: 2 AMGFHEAQINNMEMAPGGV--ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEV 59
Query: 1389 ---PNMISTLIVLLSDSDSTTV--AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK 1443
P +++ + L ++ T+ +AW L+ + + +++ A
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAW-VLTNIASG-----NSLQTRIVIQA------- 106
Query: 1444 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-- 1501
+PIF++ L S +++EQA LG + ++
Sbjct: 107 ----------------------GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 1502 -LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG-----IALKPFLPQLQTTF 1555
L ++P PL+++ + + + LS + R + P L L
Sbjct: 145 VLDCNILP---PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVL---- 197
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
L S V + A AL LS +A++ A GV +
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSD------------------GPNDKIQAVIDA--GVCR 237
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 1671
L +L+ H+D V A +G + + LQ L
Sbjct: 238 R----------------LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 1672 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTK 1731
L+L SSP + + + + N + I + + +I L S L+ +F R+ +
Sbjct: 282 LHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTAEFRTRKEAAW 340
Query: 1732 ALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791
A+ V + + + L S++ + AL+ L+++ + +
Sbjct: 341 AITNATSGGSAEQ-IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-08
Identities = 65/422 (15%), Positives = 130/422 (30%), Gaps = 73/422 (17%)
Query: 1295 GALAEVAGPGLNF---HLGTILPALLSAMGDDDMDVQSLA---------KEAAETVTLVI 1342
GA+ N G I ++ + + Q A KE + VI
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1343 DEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLL 1399
G V V L + +++ SA+++ + + +V +A + I LL
Sbjct: 61 STPGVVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELL 116
Query: 1400 SDSDSTTVAAAWEALSRVVASVPKEVQ-----------------PSYIKVIRDAIST--- 1439
S A AL + + + + R+A+
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 1440 -SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 1498
R K + + P L + L ++ A L L + +
Sbjct: 177 LCRGKSPPPEFA------------KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 1499 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQL 1551
++ + VI + L+ ++ +V S L + I+ + I L L
Sbjct: 225 DK--IQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281
Query: 1552 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREA 1605
+ L +++ A + ++A + V D L+S LQ ++ R+
Sbjct: 282 ----LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337
Query: 1606 ILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 1664
A+ + + V++ L DL+ D + A + L + + E
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK 397
Query: 1665 AD 1666
+
Sbjct: 398 RN 399
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 68/464 (14%), Positives = 147/464 (31%), Gaps = 98/464 (21%)
Query: 1241 IVPTLLHALEDDQTSD--TALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAH 1292
I ++ + +A +++LS + P ++ + V N
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 1293 ----ALGALAEVAGPGLNFHL----GTILPALLSAMGDDDMDVQ--------SLAKEAAE 1336
+ L +A +P + + + DVQ ++A ++
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 1337 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPNMIST 1394
V+D + L+ K N+ ++ R++ + + K+ +P ++
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAKVSP-CLNV 196
Query: 1395 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 1454
L LL SD+ +A A ALS + + I+ + DA
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLS-----DGPNDKIQAVIDA------------------ 233
Query: 1455 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITG 1511
+ ++ L+ ++ A +G ++ Q+ L +
Sbjct: 234 -----------GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ--- 279
Query: 1512 PLIRIIGDRFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTV 1566
L+ ++ K A T+S I + + P L I LQ +
Sbjct: 280 SLLHLLSSPKESIKKEACW-TISNITAGNRAQIQTVIDANIFPAL----ISILQTAEFRT 334
Query: 1567 RSSAALALGKLSALSTR-------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
R AA A+ ++ + + L L V D+ I + L L+ +L+ +
Sbjct: 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394
Query: 1620 -SVSSAVKIRVYSV----------LKDLVYHDDDHVRVSAASIL 1652
+ + I Y ++ L H++ + A ++
Sbjct: 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-06
Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 30/280 (10%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDP----------LVGDLLSSLQVSD-AGIRE 1604
I+ + + + SA KL LS +P +V + L+ + ++
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKL--LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 1664
L + ++ + +L+ + + V+ A LG ++ +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 1665 ----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSS 1717
++L LL L S +V + R + + L++L L
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL--- 200
Query: 1718 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALS 1775
L + + AL L V+D + +V L + +V AL
Sbjct: 201 LFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 1776 ALKSVAKANPSAIMVHVALFG-PALAECLKDGSTPVRLAA 1814
A+ ++ + V + +L L ++ A
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 522 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 574
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 575 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 627
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 628 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 680
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 681 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 739
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 791
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 792 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 848
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 720 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 775
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 776 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 826
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 827 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 887 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 935
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 994
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 995 LGA 997
Sbjct: 297 CWT 299
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 35/372 (9%)
Query: 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQV-AGR 1144
M+ S A K + + E++ ++ + L + Q +
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAW 87
Query: 1145 ALGELVRKLGERVLP----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1200
L + + +PI L ++ L + + +
Sbjct: 88 VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 1201 DELIPTIRTALC-DSILEVRESAGLAFSTLFKS----AGMQAIDEIVPTLLHALE--DDQ 1253
++P + + L + +A A S L + + + L L D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207
Query: 1254 TSDTALDGLKQILSV---RTTAVLPH-ILPKLVHL---PLSAFNAHALGALAE-VAGPGL 1305
A L + + AV+ + +LV L + AL A+ V G +
Sbjct: 208 VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Query: 1306 NFHLGT---ILPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSEL 1354
+ L +LL + ++ ++ + VID +L+S L
Sbjct: 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327
Query: 1355 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 1414
+ + YLV+ I L LL+ DS V A L
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL--GCIKPLCDLLTVMDSKIVQVALNGL 385
Query: 1415 SRVVASVPKEVQ 1426
++ +E +
Sbjct: 386 ENILRLGEQEAK 397
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 7e-09
Identities = 53/408 (12%), Positives = 129/408 (31%), Gaps = 67/408 (16%)
Query: 1313 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 1363
+ ++ + ++++ Q L++E + +I + VS L K + +
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCS 115
Query: 1364 SIRRSSAYLIGYFYKNSKLYLVDEAPNM-ISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
I+ SA+ + + I I LL+ + A AL +
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175
Query: 1423 K---------------------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 1461
++ +R+ T + R K P+
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL-------- 227
Query: 1462 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI--PITGPLIRIIGD 1519
A++ +LP ++ L E+ + + L + +E+ E V+ + L++++G
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER--IEMVVKKGVVPQLVKLLGA 285
Query: 1520 RFPWQVKSAILSTLSIII-----RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574
+ + L + I+ + + L L + ++ A +
Sbjct: 286 TEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF----PSLLTNPKTNIQKEATWTM 340
Query: 1575 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAG-KSVSSAVKI 1627
++A V + L+ L +D ++ A+ + + V
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400
Query: 1628 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DGQLADLLQEL 1671
+ L +L+ D + + + Q E +L+ +++E
Sbjct: 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 448
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 53/380 (13%), Positives = 124/380 (32%), Gaps = 37/380 (9%)
Query: 1467 LLPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 1525
L+P F+ L + + ++ ++A L + TSEQ+ I ++
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 1526 KSAI--LSTLSI-------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576
+ A+ L ++ ++ K G A+ P L L + L + L
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHG-AIDPLLALLAVPDLSTLACG---YLRNLTWTLSN 216
Query: 1577 L------SALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 1630
L + V+ ++ L+ L +D + A+ + + + VK V
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV 276
Query: 1631 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPSWAARHGS 1686
L L+ + + A +G + ++ A L +L ++P + +
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336
Query: 1687 VLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 1746
+ I + ++ L L F ++ + A+
Sbjct: 337 TWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG---GTVE 392
Query: 1747 NTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKA-------NPSAIMVHVALFGP 1797
+V I+ +++ L +++ + L A+ ++ +A +IM+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452
Query: 1798 ALAECLKDGSTPVRLAAERC 1817
+ + + V A+
Sbjct: 453 KIEALQRHENESVYKASLNL 472
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 9e-09
Identities = 61/403 (15%), Positives = 120/403 (29%), Gaps = 58/403 (14%)
Query: 1313 LPALLSAMGDDDMDVQS---------LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA 1363
LP + + DDM Q L++E + +VI V LV + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQPE 145
Query: 1364 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA--AAWEALSRVVASV 1421
++ +A+ + + L + L + S V A W AL V
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW-ALGNVAGDS 204
Query: 1422 P----------------KEVQPSYIKVIRDAIST----SRDKERRKKKGGPILIPGFCLP 1461
+ +IR A T R K+ +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD------------W 252
Query: 1462 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 1521
+ LP + + S E A + L + E + I L+ ++
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 1522 PWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 1580
V++ L + I+ + + + + L ++ A + ++A
Sbjct: 313 T-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 1581 STRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKS---VSSAVKIRVYS 1631
+T V D L+ L+V++ ++ A+ + + V
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431
Query: 1632 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 1674
L DL+ D+ + L + + E + A L N
Sbjct: 432 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA 474
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-08
Identities = 63/472 (13%), Positives = 149/472 (31%), Gaps = 106/472 (22%)
Query: 1237 AIDEIVPTLLHALEDDQTSD--TALDGLKQILSVRT-----TAVLPHILPKLVHLPLSAF 1289
+ + +P + L D + +A +QILS + ++P+LV
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 1290 NA----HALGALAEVAGPGLNFHLGTI-----LPALLSAMGDDDMDVQ--------SLAK 1332
A AL +A G + + +P + + ++V+ ++A
Sbjct: 144 PEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202
Query: 1333 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF--YKNSKLYLVDEAPN 1390
++ + V+ +E ++ N+ S+ R++ + + K + +
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ- 257
Query: 1391 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKG 1450
+ TL L+ D+ T+ A A+S + ++ +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDG-------------------PQEAIQAVIDV 298
Query: 1451 GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 1510
+ ++ L S ++ A +G ++ Q+ +
Sbjct: 299 R---------------IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343
Query: 1511 GPLIRIIGDRFPWQVKSA--ILSTLS--------IIIRKGGIALKPFLPQLQTTFIKCLQ 1560
L ++ K A +S ++ +I I +K L+
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP----------LVKLLE 393
Query: 1561 DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS---------LQVSDAGIREAILTALK 1611
+ + A A+ S+ + ++ L+S L+++D I E L AL+
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 1612 GVLKHAGKSVSSAVKIRVYSV-----------LKDLVYHDDDHVRVSAASIL 1652
+LK + + + + +++D + A I+
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 530 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 582
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 583 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 640
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 641 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 694
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 753
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 754 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 806
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 807 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 862
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 863 KVLVDPIPEVRSVAARAIGSLIR 885
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 521 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 574
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 575 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 628
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 629 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 684
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 685 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 737
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 738 VPKLTEVLTDTHPKVQSAGQTALQQV 763
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-04
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 1663 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK 1722
QL L ++ +S + + + F L + ++ RL +++ +
Sbjct: 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Query: 1723 FP-LREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKS 1779
L+ + AL + A T VVVD + + L+ S EV+ +A+ AL +
Sbjct: 144 PEMLQLEAAWALTNIASGT----SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 1780 VAKANPS---AIMVHVALFGPALAECLKDGSTPVRLAA 1814
VA + ++ A+ + + A
Sbjct: 200 VAGDSTDYRDYVLQCNAM--EPILGLFNSNKPSLIRTA 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 55/354 (15%), Positives = 104/354 (29%), Gaps = 127/354 (35%)
Query: 1310 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSS 1369
G+ LP + + DDM Q A S++L + ++ +
Sbjct: 11 GSELPQMTQQLNSDDMQEQ---LSATRKF-------------SQILSDGNEQIQAVIDAG 54
Query: 1370 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 1429
A + L+ LLS + + A ALS + + +++Q
Sbjct: 55 A---------------------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--- 90
Query: 1430 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 1489
+ DA G LP +Q L S + ++ ++A
Sbjct: 91 --AVIDA-------------GA----------------LPALVQLLSSPNEQILQEALWA 119
Query: 1490 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 1549
L + +EQ + +I G + P L
Sbjct: 120 LSNIASGGNEQ--------------------------------IQAVIDAGAL---PAL- 143
Query: 1550 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----------VDPLVGDLLSSLQVSD 1599
++ L + A AL +++ + LV LLSS +
Sbjct: 144 ------VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-QLLSS---PN 193
Query: 1600 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 1653
I + L AL + + + + L+ L H+++ ++ A L
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 36/235 (15%), Positives = 80/235 (34%), Gaps = 36/235 (15%)
Query: 1468 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 1524
LP Q L S + + A +++ +EQ + +P L++++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 1525 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 1575 GKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628
+++ V D L+ L + I + L AL + + + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 1629 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASSPS 1679
L L+ ++ + A L ++ + + A L++L L S +
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 40/212 (18%)
Query: 1468 LPIFLQGLISGSAELREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQ 1524
LP +Q L S + + A L ++ +EQ + +P L++++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP---ALVQLLSSPNEQI 70
Query: 1525 VKSAI--LSTLSI--------IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574
++ A+ LS ++ +I G + ++ L + A AL
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPA----------LVQLLSSPNEQILQEALWAL 120
Query: 1575 GKLSALSTR----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 1624
+++ + LV LLSS + I + L AL + + +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALV-QLLSS---PNEQILQEALWALSNIASGGNEQKQAV 176
Query: 1625 VKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656
+ L+ L H+++ ++ A L +
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 804 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 863
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 864 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 919
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 920 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 951
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 25/217 (11%)
Query: 1467 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 1526
+ + + L +G+A LR +AA +G + + + + L+R++ V+
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 1527 SAILSTLSIIIRKGGIALKPF-----LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 1581
L +S ++R+ L F L ++ +Q + ++ +A L L
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVL----MRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 1582 TRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 1635
+ L++ ++ + E +L AL ++ + V + + L++
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEE 256
Query: 1636 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 1672
L+ H +L + E+ + + L +
Sbjct: 257 LLRHRC--------QLLQQHEEYQEELEFCEKLLQTC 285
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-06
Identities = 87/762 (11%), Positives = 221/762 (29%), Gaps = 126/762 (16%)
Query: 1133 SSSSERRQVAGRALGELVRKLG--ERVLPS-IIPILSRGLKDPSASRRQGVCIGLSEVMA 1189
++ ++R+ A L L ++ E + I ++ K + L +
Sbjct: 19 ATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 1190 SAGKSQLLSFMDEL-IPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQAIDEIVPTLLH 1247
+ + EL +P L +A T+ + +G++ + P
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 1248 ALEDDQTSDTALDGLKQILSVRT----------TAVLPHILPKLVHLPLSAFNAHALGAL 1297
+++ DT L L ++ RT + ++ + L L
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198
Query: 1298 AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 1357
+V ++ + + S+ + + + + + ++ + + L
Sbjct: 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLA 258
Query: 1358 VG--DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 1415
+A L G +++ + ++ ++ + + D A E L
Sbjct: 259 PDMESKVRVTVAITALLNGPLDVGNQVVARE---GILQMILAMATTDDELQQRVACECLI 315
Query: 1416 RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 1475
+ S K++ K L + +L
Sbjct: 316 ----------------------AASSKKDKAK-----------ALCEQGVDILKRLYH-- 340
Query: 1476 ISGSAELREQAALGLGEL---------IEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 1526
S + +R +A +GL +L I + + + LI+ D+ +
Sbjct: 341 -SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399
Query: 1527 SAILSTLSI--IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV 1584
+ L+ L++ ++ I K + L + + ++ L +
Sbjct: 400 ADGLAYLTLDAECKEKLIEDKASIHAL----MDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455
Query: 1585 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHV 1644
+ L +++ + + I E + K ++ + + L L + +
Sbjct: 456 EMLP-EMIELAKFAKQHIPE---EHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
Query: 1645 RVSAASILGIMSQCMED-GQLADL--LQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 1701
+ A +L + E G++ ++ LL +A + + + A +
Sbjct: 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571
Query: 1702 SMS--------PLFLSIL------------------------------------DRLKSS 1717
S S L++L +++
Sbjct: 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY 631
Query: 1718 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777
L ++ L A+ + L L++ + D + + D+ E AL
Sbjct: 632 LMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689
Query: 1778 KSVAKANPSA--IMVHVALFGPALAECLKDGSTPVRLAAERC 1817
+ + ++ +A + L + + S V+
Sbjct: 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-06
Identities = 47/267 (17%), Positives = 81/267 (30%), Gaps = 33/267 (12%)
Query: 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 1516
+ + LQ ++ S LR A + L L K + + G L+
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN--KATLCSMKGCMRALVAQ 251
Query: 1517 IGDRFPWQVKSAI-----LSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT-VRSSA 1570
+ + LS + + K + + L ++C + + S
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKSV 307
Query: 1571 ALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 1619
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367
Query: 1620 SVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQLA----DLLQELL 1672
+ +R + L+ L+ + +A L +S Q A + L
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427
Query: 1673 NLASSPSWAARHGSVLVFATFLRHNPS 1699
NL S GS + + P+
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 35/268 (13%)
Query: 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG---PLIRI 1516
+ + LQ ++ S LR A + L L + + K + + G L+
Sbjct: 78 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQ 135
Query: 1517 IGDRFPWQVKSAILSTLSIIIR------KGGIALKPFLPQLQTTFIKCLQDSTR-TVRSS 1569
+ ++ I S L + K + + L ++C + + + S
Sbjct: 136 LKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL----MECALEVKKESTLKS 190
Query: 1570 AALALGKLSALSTR-----------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 1618
AL LSA T + LVG L Q + I E+ L+ V
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250
Query: 1619 KSVSSAVKIRVYSVLKDLV---YHDDDHVRVSAASILGIMSQCMEDGQL----ADLLQEL 1671
+ +R + L+ L+ + +A L +S Q + L
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310
Query: 1672 LNLASSPSWAARHGSVLVFATFLRHNPS 1699
NL S GS + + P+
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 48/353 (13%), Positives = 114/353 (32%), Gaps = 42/353 (11%)
Query: 1320 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
+ VQ LA T+ + E L E+ K + + + +R+ +A + +
Sbjct: 116 LNHSTQFVQGLA---LCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK 172
Query: 1380 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 1439
+ + LL++ + + + L+ + P ++ + K++ +
Sbjct: 173 VP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-DMLAHFRKLVPQLVRI 227
Query: 1440 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 1499
++ + G P +L L+ L + E L ++ T
Sbjct: 228 LKNLIMSGYS-PEHDVSGISDPFLQVRIL-RLLRILGRNDDDSSEAMNDILAQVATNTET 285
Query: 1500 QS------LKEFVIPITG------------PLIRIIGDRFPWQVKSAILSTLSIIIRKGG 1541
L E V+ I ++ ++ L++L ++
Sbjct: 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345
Query: 1542 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--STRVDPLVGDLLSSLQVSD 1599
A++ ++T + CL+D +++ A+ AL + ++ +LL L +
Sbjct: 346 NAVQRH----RSTIVDCLKDLDVSIKR---RAMELSFALVNGNNIRGMMKELLYFLDSCE 398
Query: 1600 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL 1652
+ + + A K S + ++ +VR A L
Sbjct: 399 PEFKADCASG---IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNL 446
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 1461 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 1520
L P + + +R + L + + PL+ + +
Sbjct: 11 SSGLVPRG----SHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE 54
Query: 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 1580
W+++ A + G + + L IK L+D + VRS AA +L ++
Sbjct: 55 D-WRIRGAAAWII------GNFQDERAVEPL----IKLLEDDSGFVRSGAARSLEQIG-- 101
Query: 1581 STRVDPLVGDLLSSLQVSDAGIREAILTAL 1610
RV + L + R+ + L
Sbjct: 102 GERVRAAMEKLAET---GTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
++ L + +R +AA +G + V L+ L+ +R +L +
Sbjct: 48 LESLSNEDWRIRGAAAWIIGNFQD-----ERAVEPLIKLLEDDSGFVRSGAARSL-EQIG 101
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 1653
RV + ++ L R A + L
Sbjct: 102 GE----------RVRAAMEKLAETGTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 1711 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 1770
+ L SL +E + +R A+ +G Q A V+ L + L DDS VR
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIG-----NFQDERA-----VEPL---IKLLEDDSGFVR 90
Query: 1771 RRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 1816
A +L+ + A+ + + G+ R A
Sbjct: 91 SGAARSLEQI--GGERVR--------AAMEKLAETGTGFARKVAVN 126
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 918 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 33/147 (22%)
Query: 1633 LKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 1692
+ ++ VR ++ L M + + LL S+ W R + +
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGD--------EAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 1693 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752
F + A+ + L L+D+ +R + ++L ++ V
Sbjct: 69 F--QDERAV----------EPLIKLLEDDSGFVRSGAARSLEQI----------GGERVR 106
Query: 1753 DILASVVSALHDDSSEVRRRALSALKS 1779
+ + R+ A++ L++
Sbjct: 107 AAM---EKLAETGTGFARKVAVNYLET 130
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 13/254 (5%)
Query: 1540 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS---TRVDPLVGDLLSSLQ 1596
G I + L KCL+D VR +AA+ + KL ++ + L +
Sbjct: 111 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170
Query: 1597 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656
S+ + + AL + + S + + + L + + ++ L +
Sbjct: 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN 230
Query: 1657 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 1716
+D + + + + S + A +V V FL P + L L
Sbjct: 231 P-KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289
Query: 1717 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSA 1776
+L + ++ + + + ++ + ++ V ++D V+ L
Sbjct: 290 TLLSGEPEVQYVALRNINLIVQKR--------PEILKQEIKVFFVKYNDPIYVKLEKLDI 341
Query: 1777 LKSVA-KANPSAIM 1789
+ +A +AN + ++
Sbjct: 342 MIRLASQANIAQVL 355
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 47/250 (18%), Positives = 93/250 (37%), Gaps = 23/250 (9%)
Query: 1554 TFIKCLQDSTRTVRSSAALALGKLSALSTR--VDPLVGDLLSSLQVSDAGIR-EAILTAL 1610
+F+K +D +R ALA+ + + + L L L+ D +R A +
Sbjct: 90 SFVKDCEDPNPLIR---ALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVA 146
Query: 1611 KGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL--- 1667
K + + V + L+DL+ + V +A + L +S+ + L DL
Sbjct: 147 K-LHDINAQMVEDQGFL---DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202
Query: 1668 -LQELLNLASSPS-WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPL 1725
+ +LL + + W G + + +NP SI +R+ L +
Sbjct: 203 NINKLLTALNECTEW----GQIFILDCLSNYNP---KDDREAQSICERVTPRLSHANSAV 255
Query: 1726 REASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 1785
++ K L L + +++ LA + L EV+ AL + + + P
Sbjct: 256 VLSAVKVL-MKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRP 314
Query: 1786 SAIMVHVALF 1795
+ + +F
Sbjct: 315 EILKQEIKVF 324
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 42/251 (16%), Positives = 86/251 (34%), Gaps = 28/251 (11%)
Query: 1584 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643
+ L + SS + D R + ALK + K V + VL+ D +
Sbjct: 23 IQKLCDRVASSTLLDD---RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQT-DRSDSEI 78
Query: 1644 VRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM 1703
+ + ++ I+S E+ + ++ +L F +
Sbjct: 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLG------------SQFTEIFIKQQENV-- 124
Query: 1704 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 1763
L LS+L+ + F +R K L LL V ++ ++ L
Sbjct: 125 -TLLLSLLE-------EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 1764 DDSSEVRRRALSALKSVAKANPS--AIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 1821
D +R + L+++ ++N + I+ F L ++G++ + E C +
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 1822 FQLTRGSEYIQ 1832
L + + Q
Sbjct: 237 QNLLKNNNSNQ 247
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-04
Identities = 92/772 (11%), Positives = 222/772 (28%), Gaps = 129/772 (16%)
Query: 899 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 958
++ + S +N+ + + +S + + + +L D+ S+ G LT+
Sbjct: 90 IVPLMISLPNNL-QVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAH 148
Query: 959 YLPRSLGVQFQ-NYLQQVLPAILDGLADE-----NESVRDAALGAGHVLVEHYATTSLPL 1012
+ + F+ + L + +LD + + L +
Sbjct: 149 SIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLV 208
Query: 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1072
L+ D D + ++++ + K S L + + + +I E
Sbjct: 209 LIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQE 268
Query: 1073 VLGRDKR--------------NEVLAALYMVRSDVSL-SVRQAALHVWKTIVANTP---- 1113
++ L + + + +L +
Sbjct: 269 LVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEI 328
Query: 1114 KTLKEIMPVLMNTLISSLA------------------------SSSSERRQVAGRALGEL 1149
+ M + +I S + RR+ L EL
Sbjct: 329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388
Query: 1150 VRKLGERVLPSIIPILSRGLKDPSAS-----RRQGVCIGLSEVMASAG------------ 1192
K V + + + + + + + I L +A G
Sbjct: 389 KEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN 448
Query: 1193 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 1252
++ F + I T+ + +R A T + E++P L L+ D
Sbjct: 449 LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTD 508
Query: 1253 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 1312
+ V T A + K++ + S + + +++ +
Sbjct: 509 E------------YVVYTYAA--ITIEKILTIRESNTSPAFIFHKEDISN-----STEIL 549
Query: 1313 LPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEGVESLVSELLKGVGDNQASIRRS 1368
L L++ + + LA+ ++ E+ ++ L +LL
Sbjct: 550 LKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL------------- 596
Query: 1369 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 1428
A I +K + S+ +E++ ++ ++ P
Sbjct: 597 -AQFIEIVTIMAK------------------NPSNPRFTHYTFESIGAILNYTQRQNLPL 637
Query: 1429 YIKVIRDAIST--SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQA 1486
+ + T S D + I+ + + Q L++ + +
Sbjct: 638 LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGN 697
Query: 1487 ALGLGELIEVTSEQSLKEF--VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544
+ L++ + F ++P+ G R+I + +L I++ L
Sbjct: 698 IPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEH--IMLLIDMNRL 755
Query: 1545 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 1596
+P++ Q+ ++ LQ+S L + D L+ + +Q
Sbjct: 756 RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLI-HFIDEVQ 806
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 | Back alignment and structure |
|---|
Score = 45.4 bits (106), Expect = 2e-04
Identities = 100/958 (10%), Positives = 247/958 (25%), Gaps = 127/958 (13%)
Query: 870 PEVRSVAARAIGSLIR----GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925
EV+ A + S + + EN +L +L+++
Sbjct: 54 QEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG---------------- 97
Query: 926 LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 985
+ + + H + L +L+ L
Sbjct: 98 -PKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSA--DVQLWIMLEVLTA 154
Query: 986 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1045
E + V++ + L++ VE + R+ + + K
Sbjct: 155 IPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCV- 213
Query: 1046 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1105
+ + + T + + ++ +
Sbjct: 214 GTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIII 273
Query: 1106 KTIVANTPKTLKEIMPVLMNTL--ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1163
+ N PKT ++ + +++L I+ + + L E
Sbjct: 274 QPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVE----RHST 329
Query: 1164 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR---TALCDSILEVR- 1219
+L G+ V + E++ K + + L D + +
Sbjct: 330 LLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389
Query: 1220 ESAGLAFSTLFKSAGMQAIDEIV-------PTLLHALEDDQTSD------TALDGLKQIL 1266
+ K +V L D D
Sbjct: 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCY 449
Query: 1267 SVRTTAVLPHILPKLVHLPLSAFNA-----------HALGALAEVAGPGLNFHLGTILPA 1315
V +L + L ++ ++AE G + ++
Sbjct: 450 DVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRV 509
Query: 1316 LLSAMGDDDM-DVQSLAKEAAETVT--LVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 1372
L + + A E + L+ + + ++ L++G+ +S+ +
Sbjct: 510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL---NSSMSAQATLG 566
Query: 1373 IGYFYKNSKLYLVDEAPNMISTLIVLLSDS--DSTTVAAAWEALSRVVASVPKEVQPSYI 1430
+ ++ +L L A +++ L+ ++ ++ ++++ + E P Y+
Sbjct: 567 LKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626
Query: 1431 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGL 1490
+I + P + IF +IS L +
Sbjct: 627 DIIVSPCFEELQAICQADSKTPA-----------ARIRTIFRLNMIST---LFSSLNTDV 672
Query: 1491 GELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW--QVKSAILSTLSIIIRKGGIALKPFL 1548
E V+ T P+ + I + + V A S + I + +P L
Sbjct: 673 DEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPML 732
Query: 1549 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL------------- 1595
L + Q + + PL+ LL
Sbjct: 733 QDLCLFIVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPE 792
Query: 1596 --QVSDAGIREAILTALKGVLKHAGKSV---SSAVKIRVYSVLKDLVYHDDDHVRVSAAS 1650
+ + E L ++K + + + A V+ + + + + +
Sbjct: 793 QNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE----SGAIRN 848
Query: 1651 ILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR-----HNPSAISMSP 1705
+ ++ + + + E++ G ++ + +
Sbjct: 849 SIQFLTHFVMQSRNHAHVTEVVL---------ATGEQTLYTAMMCVGYLTPRSQVDKFAD 899
Query: 1706 LFLSILDR--------LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDIL 1755
+ L++ + +KS + FP + + R I N ++ L
Sbjct: 900 ILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTR-YTALIIKEKVNKRLLQQHL 956
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.9 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.86 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.86 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.86 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.85 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.82 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.81 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.78 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.76 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.76 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.75 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.75 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.75 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.74 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.73 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.73 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.67 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.67 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.67 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.67 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.66 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.65 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.65 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.64 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.63 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.62 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.62 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.6 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.59 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.59 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.59 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.58 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.58 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.56 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.54 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.52 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.49 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.47 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.46 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.45 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.44 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.44 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.39 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.37 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.33 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.28 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.28 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.15 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.12 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.11 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.1 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.04 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.97 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.97 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.96 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.95 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.94 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.94 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.9 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.89 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.88 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.88 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.87 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.87 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.82 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.78 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.78 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.76 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.71 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.7 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.7 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.67 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.64 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.59 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.57 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.56 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.49 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.42 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.38 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.35 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.34 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.21 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.19 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.94 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.94 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.82 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.79 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.7 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.63 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.5 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.44 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.41 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.38 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.35 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 97.32 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 97.14 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.01 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.41 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 95.15 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 94.37 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.31 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 94.03 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 93.71 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 92.52 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 90.14 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 90.11 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 89.56 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 88.71 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 83.51 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 82.69 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 82.24 | |
| 2b6c_A | 220 | Hypothetical protein EF3068; structural genomis, D | 80.39 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=578.33 Aligned_cols=1017 Identities=17% Similarity=0.186 Sum_probs=761.1
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~----l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
.-++.++..+.+++.++|..|...+...... +.+...+.+++.+++.+.+++|++|..|+.+|+.++..++. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999998877765432 22234578999999999999999999999999999988766 4
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 812 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~ 812 (1866)
+++.+++.++..+.|+++.||.+|+.+|+.++..+..+.. +. ......+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5678899999999999999999999999999876653210 00 00012455
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 813 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 813 ~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
.++|.+.+.+. +.++.+|..|+.+++.++...+ +.+.+|.+.+++.+...+.++++.||..|+.+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 67788888887 4778999999999999997543 36778999999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
++.+++.+++.+.+..+...|..++++++.++...|.. +++.++|.+++.+.++++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88899999988876544347888999999999988864 567899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccCC-------------------------------------ChHHHHHHHHHHHHHHHhhcc---c
Q 000201 969 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1008 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~-------------------------------------~~~VR~~a~~al~~i~~~~~~---~ 1008 (1866)
.||++.++|.++..+..+ ...+|..+..++..+....+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999877421 124688888888887775442 2
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
.+..++|.+...+.|.++.+|.++++.++.++...+...+.. . +. ..-...+.....+. ...+.+++.+..
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~-----~~l~~ll~~l~~ 441 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL--C-DP-DAMEQGETPLTMLQ-----SQVPNIVKALHK 441 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------------CCCHHHHHH-----HHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc--c-Cc-cccccccchHHHHH-----HHhhHHHHHHHH
Confidence 345567877777788888899988888888876653211000 0 00 00000000000111 223456666666
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHhccc----cccchH
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSII 1162 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~--~~R~~A~~~L~~lv~~~~~~----~l~~ll 1162 (1866)
.+.|.++.+|+.++.+++.++...+..+.++++.+++.+...+.+++. .+|..++.+++.++...++. .++.++
T Consensus 442 ~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll 521 (1230)
T 1u6g_C 442 QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521 (1230)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH
Confidence 688999999999999999999887777778899999999999988764 88999999999998877655 567889
Q ss_pred HHHhcccCCCCccchhhHHHHHHHHHHhhch------hhHHhhHhhHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1163 p~L~~~L~d~~~~vr~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
|.+...+.++++.+|..++.+++.++..+++ ..+.+|++.+++.+...+ .|.++++|..|..+++.+....|
T Consensus 522 p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 522 PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999889998888888899999998877654 356789999999999988 78899999999999999999888
Q ss_pred hhh---HhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHH-hCCCchhhHh
Q 000201 1235 MQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFHLG 1310 (1866)
Q Consensus 1235 ~~~---~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~-~g~~l~~~l~ 1310 (1866)
... +..++|.|.+.+.++..+..++.++.. ++.. .+..+.++++
T Consensus 602 ~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~--------------------------------i~~~~~~~~~~~~~~ 649 (1230)
T 1u6g_C 602 DNLGSDLPNTLQIFLERLKNEITRLTTVKALTL--------------------------------IAGSPLKIDLRPVLG 649 (1230)
T ss_dssp GGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHH--------------------------------HTTCSSCCCCHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccchhHHHHHHHHHH--------------------------------HHhCccccchHHHHH
Confidence 643 344455555555544333233333322 2211 1235678999
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhh
Q 000201 1311 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 1386 (1866)
Q Consensus 1311 ~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~ 1386 (1866)
.++|.+...+.+++..+|..+..+++.++...+. +.+..++..+...+.++|+..+..+..++..+++..+..+.+
T Consensus 650 ~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 650 EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 9999999999999999999999999999987653 345555555556677888999999999999999877777777
Q ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccc
Q 000201 1387 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP 1466 (1866)
Q Consensus 1387 ~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ 1466 (1866)
+.+.+++.++..+.++.- ...+..++..+.+.. ... +. + +..+..
T Consensus 730 ~~~~~l~~~~~~l~~~~~--~~~~~~~l~~~~~~l---------------~~~----------~~-----~---~~~~~~ 774 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLL--QGGALSAMLDFFQAL---------------VVT----------GT-----N---NLGYMD 774 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTC--CHHHHHHHHHHHHHH---------------HTT----------CC-----T---TCSHHH
T ss_pred hHHhHHHHHHHHHcCccc--chHHHHHHHHHHHHH---------------Hhc----------CC-----C---CCCHHH
Confidence 788888888888865531 111222222221110 000 00 0 012223
Q ss_pred cHHHHHHhhcc-----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhc
Q 000201 1467 LLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKG 1540 (1866)
Q Consensus 1467 ilp~l~~~L~~-----~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~-~~~~~vr~~al~~L~~L~~~~ 1540 (1866)
+++.+.+.+.. .....+..++.+++.++..++. .....+.. ++..+.+ ......+..++.+++.+....
T Consensus 775 ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 849 (1230)
T 1u6g_C 775 LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQ----FIQDVKNSRSTDSIRLLALLSLGEVGHHI 849 (1230)
T ss_dssp HHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTT----TTTTTTTTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHH----HHHHhCCCCccHHHHHHHHHHHHHhcccC
Confidence 33333322211 1234577889999999987743 22222222 2333332 135677888888999887654
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCcc
Q 000201 1541 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620 (1866)
Q Consensus 1541 ~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~ 1620 (1866)
+ +.+ .|++++++++++.++++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++.+.+..
T Consensus 850 ~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~ 923 (1230)
T 1u6g_C 850 D--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVV 923 (1230)
T ss_dssp C--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCST
T ss_pred C--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChh
Confidence 3 344 48899999999999999999999999999974 56778999999999764 677999999999999987766
Q ss_pred ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1621 l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
...++...|+..|...+.+.++.+|..+++|+|.++...++
T Consensus 924 ~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~--------------------------------------- 964 (1230)
T 1u6g_C 924 GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------------------------------------- 964 (1230)
T ss_dssp TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG---------------------------------------
T ss_pred hHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH---------------------------------------
Confidence 66799999999999988888889999999999999876542
Q ss_pred ccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000201 1701 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 1780 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~ 1780 (1866)
.+++.+.+.+.++++.+|.+++.++++++.... +..+.++.++++.++.+++|++.+||++|+++++++
T Consensus 965 --------~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~ 1033 (1230)
T 1u6g_C 965 --------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1033 (1230)
T ss_dssp --------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 122233334566777889999999888876553 223457788889999999999999999999999999
Q ss_pred HhhCcchhhhhHhhHHHHHHhhhccCcc------------------hhhhhHHHHHHHhhcccccchhHHHHHHHhhhhh
Q 000201 1781 AKANPSAIMVHVALFGPALAECLKDGST------------------PVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLD 1842 (1866)
Q Consensus 1781 a~~~~~~~~~~l~~l~p~l~~~~~~~~~------------------~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~~ 1842 (1866)
++++|+.+.++++.++|.|+++++.++. .+|.+|..|+..+++...+ ..+ +.+|+
T Consensus 1034 ~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~--~i~-~~~~~---- 1106 (1230)
T 1u6g_C 1034 AHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD--RLD-IFEFL---- 1106 (1230)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS--SSC-HHHHH----
T ss_pred HhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH--hCC-HHHHH----
Confidence 9999999999999999999999865443 7999999999999987544 222 44444
Q ss_pred hhhhccCCCC
Q 000201 1843 ARRLSKFPEH 1852 (1866)
Q Consensus 1843 ~~~~~~~~~~ 1852 (1866)
.+|+..||++
T Consensus 1107 ~~~~~gl~d~ 1116 (1230)
T 1u6g_C 1107 NHVEDGLKDH 1116 (1230)
T ss_dssp HHHHHTTSSC
T ss_pred HHHHcccCch
Confidence 4889999984
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=561.27 Aligned_cols=1080 Identities=17% Similarity=0.183 Sum_probs=780.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCc--chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~--~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+..++.++. +.+.+.|+.|...|...++.... +......+++.+.+.+.+ .+|..|.+|+.+++.+++..+.
T Consensus 7 ~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH---
Confidence 4556677764 56678999999888877654211 101123578888888875 5789999999999999987653
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---------hHHhHHHHHHhhcC-CCChhhHHHHHHHHHHH
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---------~v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l 722 (1866)
+++..+++.++..+.|+++.||.++..+++.++..+++. ..+.++|.+++.+. +++|++|.+|+.+|+.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999988875 36899999999998 58999999999999999
Q ss_pred HhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC-hhHH-HHHHHHHhc
Q 000201 723 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 800 (1866)
Q Consensus 723 ~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~-~~vr-~al~~L~~~ 800 (1866)
++..++.+..+++.+++.+...+.|+++.||..|+.+++.++...++..+..+++.+++.+.+++ ..+| .++..+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 99888877778899999999999999999999999999999988876666777787777765443 2233 344444331
Q ss_pred -cccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-------------
Q 000201 801 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 866 (1866)
Q Consensus 801 -~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~------------- 866 (1866)
......-.+++..++|.+.+.+.+.++++|..+..+++.++...+ +.+.+|++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111112235678899999999999999999999999999998643 4778999999999877663
Q ss_pred ------------------------CCCHhHHHHHHHHHHHHHhhcCC---CChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 867 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 867 ------------------------d~~~~vR~~a~~aL~~l~~~~g~---~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
|..|.+|..|+.+++.++...++ .+++.++|.+...+.+.. ..+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 12467899999999999997664 256677888877775544 45899999999
Q ss_pred HHHHHHhCh------------------h----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 920 SEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 920 ~~l~~~~g~------------------~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
+.++...|. . .++.+++.+.+.+.++++.+|.+++.+++.+...++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 988887653 1 335556666666889999999999999999999988888899999999
Q ss_pred HHHhhccCCCh--HHHHHHHHHHHHHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 978 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 978 ~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
.++..+.|+.+ .+|..++.++..++...+.. .++.++|.+...+.|.+|++|..++..++.++..+....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~---- 554 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD---- 554 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc----
Confidence 99999999875 89999999998888766554 456788999999999999999999999999886653210
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
.. ..... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 555 ----~~-~~~~~------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 555 ----QP-SSFDA------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----SC-CCCCC------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----cc-cccch------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 00 00000 023345666666655 788899999999999999998888777889999999988
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhc----cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1205 (1866)
.+.+. ..|..+..+++.++.... ..+++.++|.+...+.++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 87643 478889999998875432 235688899999999999999999999999999887754322233333443
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhh
Q 000201 1206 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 1282 (1866)
Q Consensus 1206 ~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~ 1282 (1866)
.+...+.+.|.++...+..++..+.+..+.. ..+.++|.++..+.+...++.++..+..++.
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~--------------- 760 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ--------------- 760 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHH---------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHH---------------
Confidence 3445567888888888888888887655432 2345666666665554323333332222111
Q ss_pred cCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCC-----CCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhc
Q 000201 1283 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 1357 (1866)
Q Consensus 1283 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~ 1357 (1866)
.+... +.. ...+..+++.++..+.. .+...+..+..+++.++...++... .+++.+...
T Consensus 761 -------------~l~~~-~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~ 824 (1230)
T 1u6g_C 761 -------------ALVVT-GTN-NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQD 824 (1230)
T ss_dssp -------------HHHTT-CCT-TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTT
T ss_pred -------------HHHhc-CCC-CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHH
Confidence 11100 110 23456666666544332 2345677778888888876654332 677777777
Q ss_pred cCC--CchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHH
Q 000201 1358 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 1435 (1866)
Q Consensus 1358 l~~--~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~ 1435 (1866)
+++ .+...+..++.+++.+.... ++.+ .+++.+.+...+.|+++.||.+|+.+|+.++...
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~--~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~-------------- 887 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHI--DLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVGN-------------- 887 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHS--CCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT--------------
T ss_pred hCCCCccHHHHHHHHHHHHHhcccC--CCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccC--------------
Confidence 764 35667788888888774422 2333 2567888889999999999999999999986321
Q ss_pred HHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHH
Q 000201 1436 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 1515 (1866)
Q Consensus 1436 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~ 1515 (1866)
+..++|.+++++.++ ++.|...+.++++++...+.+.+.||+..+
T Consensus 888 ----------------------------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i------ 932 (1230)
T 1u6g_C 888 ----------------------------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENI------ 932 (1230)
T ss_dssp ----------------------------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH------
T ss_pred ----------------------------HHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHH------
Confidence 123345555555443 445667777777777655444445554444
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHh
Q 000201 1516 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 1595 (1866)
Q Consensus 1516 ~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l 1595 (1866)
++.+++.+.+.++.+|..++.|+|.+....+ +.++|.+.+.+
T Consensus 933 ------------------------------------~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 933 ------------------------------------WALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp ------------------------------------HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred ------------------------------------HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 4444444444455677777777777765433 56777777777
Q ss_pred ccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh---HHHHHHHHHH
Q 000201 1596 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 1672 (1866)
Q Consensus 1596 ~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~---~~~~~l~~ll 1672 (1866)
+++++.+|..++.+++.++...+.... ++...++..+...+.+++..+|..+..+++.+++..|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~~-~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPID-PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTHH-HHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhhH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 777777888888888777776665554 677777777777788999999999999999999887742 2344444444
Q ss_pred hccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHH
Q 000201 1673 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752 (1866)
Q Consensus 1673 ~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~ 1752 (1866)
+...-.....| .+..+|.+ +..+++.++|++|..|+++++.++... -.+.
T Consensus 1054 ~~~~~~~~~~~---------~v~~gp~k----------------~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR---------EVEMGPFK----------------HTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE---------EEEETTEE----------------EEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe---------eeccCCcc----------------cccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 32221111111 01122321 235677799999999999999987543 2478
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc--Ccchh----------hhhHHHHHHH
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPV----------RLAAERCAVH 1820 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~--~~~~v----------k~aae~a~~~ 1820 (1866)
++++.++.++.|+ .|+|..+...+.++++.+|..+.++++.++.++.+.+.. +..+| ++++.||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999887543 33344 4566689999
Q ss_pred hhcccccchhHHHHHHHhh
Q 000201 1821 AFQLTRGSEYIQGAQKFIT 1839 (1866)
Q Consensus 1821 l~~~~~~~~~~~~~~~~~~ 1839 (1866)
+.+++..+ ..+.|.+|+.
T Consensus 1183 l~~~~~~~-~~~~~~~~~~ 1200 (1230)
T 1u6g_C 1183 LLTIPEAE-KSPLMSEFQS 1200 (1230)
T ss_dssp TTSSCSCS-SSSSCCCCCH
T ss_pred HHhCCCcc-cChHHHHHHH
Confidence 98888654 3345555554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-35 Score=405.39 Aligned_cols=742 Identities=13% Similarity=0.155 Sum_probs=565.0
Q ss_pred hhhhhhhc-CCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh--
Q 000201 369 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-- 444 (1866)
Q Consensus 369 ~~~ll~~l-~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~-- 444 (1866)
+..++... .++|+.+|+.|.+.|..+.+. .|+.+ ..+...+. .. +.+.++|+.++..|++....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~----~~l~~il~----~~----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFA----GLSSQVLI----DE----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHH----HHHHHHHh----CC----CCChHHHHHHHHHHHhhccCcC
Confidence 45677777 899999999999999887654 24433 33333321 11 11468999999999987421
Q ss_pred --------------cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhh
Q 000201 445 --------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 509 (1866)
Q Consensus 445 --------------~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~ 509 (1866)
++++....+...++. .+.++++.+|..+..+...+....++ ..|+.+++.+-..+.++.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~----- 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ----- 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-----
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-----
Confidence 444444456666654 57788899999999888777766555 489999998888876521
Q ss_pred hhhHHHHHHHHHHHHhhhhccC----CcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhh-----hHHHHHH
Q 000201 510 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSR 578 (1866)
Q Consensus 510 ~~~vr~~av~~l~~i~~~l~~~----~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ 578 (1866)
+..+|+.++.+++.++..+.+. .+....+++.+...+.++ ++.++..+.+|+..++....+. ....+-.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 1578999999999999876543 346788999999999987 8899999999988765443321 1233333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhh--c-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-------
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 648 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~--~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~------- 648 (1866)
.+..+..++++.+|+.+..+|..++...+. .+.. . .+++.+...+.+. +...|..++..+..+++...
T Consensus 228 ~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334455678899999999999999987642 2211 1 5666666666654 56888899999998887631
Q ss_pred ----------cCchhcHHhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 649 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 649 ----------~~~~p~v~~llp~ll~~~~D-------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
..+.+++..++|.++..+.+ .+..+|.++..++..++..++...++.++|.+.+.+.+++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999988874 3468999999999999998887667899999999999999999
Q ss_pred HHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhH
Q 000201 712 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 790 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~v 790 (1866)
|.+++.+++.+++++. +.+..+++.++|.+...++|+++.||.++++++++++..+....
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------- 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI------------------- 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------------
Confidence 9999999999998875 77888899999999999999999999999999999987654210
Q ss_pred HHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CcchhhhHhhhhHHHHHHhcC-
Q 000201 791 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 867 (1866)
Q Consensus 791 r~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~--~~~l~~~~~~ll~~L~~~l~d- 867 (1866)
...+.+..++|.+.+.+++. +.+|..++.++++++..+++ +..+.+|++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 00123445667777777665 88999999999999987652 356789999999999999984
Q ss_pred -CCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccC--------------CCHHHHHHHHHHHHHHHHHhChh
Q 000201 868 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 868 -~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~--------------~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
.++.+|..++.+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4566777777666531 12346778889999999998875
Q ss_pred ---HHHHHHHHHHHHhccCCh-hHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 000201 930 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 930 ---~l~~ll~~l~~~l~~~~~-~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~ 1005 (1866)
+.+.+++.+...+++.++ .+|+.++.+++.++...|..|.||++.++|.++..+.++++++|..++.++..+...+
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 567888888888888777 8999999999999999999999999999999999998888888888877766665543
Q ss_pred cccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHH
Q 000201 1006 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1085 (1866)
Q Consensus 1006 ~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~ 1085 (1866)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 101 11123333
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000201 1086 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1152 (1866)
Q Consensus 1086 L~~~~~D~--~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-----------~~~R~~A~~~L~~lv~~ 1152 (1866)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..++.+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999998888899999999999998886432 45799999999999988
Q ss_pred hcc------ccccchHHHHhcccCCC----CccchhhHHHHHHHHHHhhchhhHHhhHh-hHHHHHHHhhc---CCcHHH
Q 000201 1153 LGE------RVLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1218 (1866)
Q Consensus 1153 ~~~------~~l~~llp~L~~~L~d~----~~~vr~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~~~~v 1218 (1866)
+++ +.++.+++.+...+.|. +..+|..++.+++.+...+++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 24566677776766663 78899999999999988884456777888 88888877665 567889
Q ss_pred HHHHHHHHHHHHH
Q 000201 1219 RESAGLAFSTLFK 1231 (1866)
Q Consensus 1219 r~~A~~al~~l~~ 1231 (1866)
++.|..+.+.+..
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=407.24 Aligned_cols=707 Identities=15% Similarity=0.190 Sum_probs=549.0
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh-hc--
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VL-- 445 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~-~~-- 445 (1866)
+..+++...++|+.+|+.|.+.+..+ ...|+.. .++..+... . . + .+..+|+.++..|++... ++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~-~~l~~il~~----~-~--~---~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFN-NYLIFVLTK----L-K--S---EDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHH-HHHHHHHHT----C-T--T---SCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHH-HHHHHHHhc----c-C--C---CChHHHHHHHHHHHHHHHHccCC
Confidence 45667666789999999999999765 3455543 233333321 0 1 1 145899999999998764 33
Q ss_pred -CCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHH
Q 000201 446 -RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 524 (1866)
Q Consensus 446 -~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i 524 (1866)
+++....+...++ .++.|+++.||..+..+...+....+...|+.+++.+-..+.+++ ..+|+.++.+++.+
T Consensus 83 ~~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~------~~~r~~al~~L~~i 155 (852)
T 4fdd_A 83 FPNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSED------YNTCEGAFGALQKI 155 (852)
T ss_dssp CCHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSS------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCC------HHHHHHHHHHHHHH
Confidence 2333334555554 457899999999999998888887788899999998888876532 56899999999999
Q ss_pred hhhhccC------CcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh----hhHHHHHHHHHHHHcCCChhHHHH
Q 000201 525 AKHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRG 594 (1866)
Q Consensus 525 ~~~l~~~------~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~----~~~~~l~~ll~~L~~~~~~~~R~~ 594 (1866)
+...... ...+..+++.+++.+.++++.++..++.++..++..... .....++.++.. ..++++.+|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~-~~d~~~~vr~~ 234 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFAL-AGDEEPEVRKN 234 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHH-HTCCCHHHHHH
T ss_pred HHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-cCCCCHHHHHH
Confidence 9765432 123678999999999999999999999998877644332 234556655553 35678899999
Q ss_pred HHHHHHHHHhhhCcchhhh--cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--hCcCchhcHHhHHHHHHHHc----
Q 000201 595 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF---- 666 (1866)
Q Consensus 595 A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~--l~~~~~p~v~~llp~ll~~~---- 666 (1866)
|+.+|..++...+ +.+.. ..+++.+.+.+.+. ++..|..|+..+..+++. ..+.+.|++..++|.++..+
T Consensus 235 a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 235 VCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9999999998653 22222 25777887777764 567888888888888763 22346789999999999887
Q ss_pred -------CC-----------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 667 -------SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 667 -------~D-----------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
+| .+..||.++..+++.++..++...++.++|.+.+.+.+++|++|.+|+.+||.+++++++
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 44 345789999999999999888766788999999999999999999999999999999998
Q ss_pred hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCc
Q 000201 729 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~ 808 (1866)
.+..+++.++|.+...++|+++.||.+|+++++.++..+.... ..
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~ 437 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PD 437 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HH
Confidence 8888999999999999999999999999999999987553110 01
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
+.+..++|.+.+.+.+.++.+|..|+.++++++...+. .+.+|++.+++.+...+.+........+..+++.++...|
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 515 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhh
Confidence 23455677777788888899999999999999986543 5889999999999999998888887889999999998877
Q ss_pred CC-----ChhhHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhc--------------
Q 000201 889 EE-----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS-------------- 943 (1866)
Q Consensus 889 ~~-----~~~~l~~~L~~---~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~-------------- 943 (1866)
+. +++.++|.+++ .+.++.. ..+ .++++++.++..+|.. +++.+++.++..+.
T Consensus 516 ~~~~~~~~~~~l~p~l~~~~~~l~d~~~-~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 516 HHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHSCTTCT-THH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhccHHHHHHHHHHHHHHHHhcccccH-HHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 53 67778888874 3443332 244 7889999999999875 44555554443322
Q ss_pred ---cCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---chhchHH
Q 000201 944 ---HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLP 1015 (1866)
Q Consensus 944 ---~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i~~llp 1015 (1866)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++.++.|++++||..+..++..+...++.. .++.++|
T Consensus 594 ~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp 673 (852)
T 4fdd_A 594 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 673 (852)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12567889999999999999999999998 789999999999999999999999999998877654 3456888
Q ss_pred hHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCC--C
Q 000201 1016 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--V 1093 (1866)
Q Consensus 1016 ~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D--~ 1093 (1866)
.+.+.+.++++.+|..++..+|++....+.. + .++...+++.|+..+++ .
T Consensus 674 ~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~---------------------------~-~p~~~~il~~L~~~l~~~~~ 725 (852)
T 4fdd_A 674 ILGTNLNPEFISVCNNATWAIGEISIQMGIE---------------------------M-QPYIPMVLHQLVEIINRPNT 725 (852)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG---------------------------G-GGGTHHHHHHHHHHHTCSSC
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHhhHh---------------------------H-HHHHHHHHHHHHHHhCCCCC
Confidence 8888888888899999999999987554210 0 12334566666655444 3
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhccccccchHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPI 1164 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1164 (1866)
...+++.|+.+++.++...|..+.++++.+++.++..+.. .+.+.|..|..++..+++..+....+.+..+
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~ 797 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFF 797 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 5689999999999999999988889999999999998864 5667899999999999998777666665533
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=381.94 Aligned_cols=719 Identities=14% Similarity=0.172 Sum_probs=537.0
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHh--c-cccccCCcchhhhHHHHHHHhh
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ--T-TFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~--~-~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
.++++.+|+.|-..|.++- .+|.+...+-.++..+.+.+..+|.....+.. . ..-...+......+.+.+.+.+
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~---~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l 99 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 99 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHT---TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHHHHH---hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999998764 24655544445555445666778853332222 1 1112244556678888899999
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--------Chhh
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFPD 894 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~--------~~~~ 894 (1866)
.+.++.+|..++++++.++..- ....++.+++.+.+.+.++++.+|..+..+++.+++..++. .+..
T Consensus 100 ~~~~~~vr~~~a~~i~~ia~~~-----~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 100 GDSSPLIRATVGILITTIASKG-----ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT-----TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-----CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 9999999999999999999842 12357889999999999999999999999999999987643 2667
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
++|.+++.+.+ .+..+|..++.+++.++...+.. .++.+++.+...+.++++.+|..++.+|+.++...+..+.+|
T Consensus 175 il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 175 MIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888887764 45679999999998776554432 456788889998999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh-----hcccchhchHHhHhcccC-----------C-----------C
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N-----------D 1024 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~-----~~~~~i~~llp~l~~~l~-----------d-----------~ 1024 (1866)
++.+++.++..+.|++++||..+++.+..+.+. +-...+..++|.+...+. | .
T Consensus 254 l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 254 MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------C
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 999999999999999999999999988877542 112234456666654441 2 4
Q ss_pred chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000201 1025 NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV 1104 (1866)
Q Consensus 1025 ~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~ 1104 (1866)
+|.+|.++...++.+. ..+|.+....+++.+...+.|.++.+|.+|+.+
T Consensus 334 ~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp CCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5666666666666553 233333444566666666788899999999999
Q ss_pred HHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc----ccccchHHHHhcccCCCCccchhhH
Q 000201 1105 WKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGV 1180 (1866)
Q Consensus 1105 l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vr~~a 1180 (1866)
++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.+++.+...+.++++.+|..+
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a 462 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988888889999999999999999999999999999999987654 3567888888889999999999999
Q ss_pred HHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHH
Q 000201 1181 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260 (1866)
Q Consensus 1181 ~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~ 1260 (1866)
+.+++.+...+++. +.+|++.+++.+...+.+.+......+..+++.+....|....
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~---------------------- 519 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN---------------------- 519 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC----------------------
T ss_pred HHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc----------------------
Confidence 99999998877654 7789999999999888766666555566666666655443110
Q ss_pred HHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHH---HhcCCCCHHHHHHHHHHHhH
Q 000201 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL---SAMGDDDMDVQSLAKEAAET 1337 (1866)
Q Consensus 1261 ~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~---~~l~~~~~~vr~~a~~~l~~ 1337 (1866)
-..|++.++|.++ +.+.+.++.++ .+.++++.
T Consensus 520 --------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~ 554 (852)
T 4fdd_A 520 --------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSS 554 (852)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHH
T ss_pred --------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHH
Confidence 0123333344333 22333333343 34455555
Q ss_pred hhhccch---hcHHHHHHHHHhc-----------------cCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHH
Q 000201 1338 VTLVIDE---EGVESLVSELLKG-----------------VGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTL 1395 (1866)
Q Consensus 1338 l~~~~~~---~~~~~ll~~L~~~-----------------l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L 1395 (1866)
++..++. ++.+.+++.++.. ...++...+..++.+++.++...+..+.+|+ +.+++.+
T Consensus 555 i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l 634 (852)
T 4fdd_A 555 VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM 634 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHH
Confidence 5554433 1223333322211 2233567899999999999988888888887 7899999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhh
Q 000201 1396 IVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 1475 (1866)
Q Consensus 1396 ~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L 1475 (1866)
+.++.|++..||..++.+++.++...+.+. ..++..++|.+.+.+
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTNL 679 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHTC
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHHc
Confidence 999999999999999999999986554321 134556778888888
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 000201 1476 ISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554 (1866)
Q Consensus 1476 ~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~-~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~ 1554 (1866)
..+..+.|..++.++|.++... +..+.||+..++++|++++.+. .+..++..+..++|.++...+..+.|+++++++.
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~-~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQM-GIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHH-GGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHH
Confidence 7778899999999999999988 5679999999999999999763 2467999999999999999888888999999999
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHh---ccCChhHHHHHHH
Q 000201 1555 FIKCLQDS-TRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL---QVSDAGIREAILT 1608 (1866)
Q Consensus 1555 l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~L~~~l---~~~~~~vr~~~l~ 1608 (1866)
+++.|.+. +.+.|..|..+|+.++...|. +.+.+..++..+ .++.++++..+.+
T Consensus 759 ~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 817 (852)
T 4fdd_A 759 WCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCK 817 (852)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999864 667899999999999776553 334444444443 3344555544443
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=383.24 Aligned_cols=743 Identities=15% Similarity=0.173 Sum_probs=540.7
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh----
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD---- 443 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~---- 443 (1866)
+..++..+.+++..+|+.|++.+..+.+. .|+. +..|+..... .. .+..+|+.++.+|++...
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~----~~~L~~~l~~---~~-----~~~~vR~~a~~~Lk~~i~~~~~ 70 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTF----LVELSRVLAN---PG-----NSQVARVAAGLQIKNSLTSKDP 70 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC---TT-----SCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhH----HHHHHHHHhC---CC-----CCHHHHHHHHHHHHHhccccch
Confidence 45677778899999999999999877643 2333 3333332211 10 135799999999998642
Q ss_pred -----------hcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhh
Q 000201 444 -----------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 444 -----------~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
.+.++....+...++ ..+.++++.+ ..+..+...+....+. .+|+.+++.+...+.++.. +.
T Consensus 71 ~~~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~----~~ 144 (876)
T 1qgr_A 71 DIKAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TE 144 (876)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CH
T ss_pred HhHHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCC----CH
Confidence 122222333444444 3566777777 7777776666555444 8899999999888876310 15
Q ss_pred hHHHHHHHHHHHHhhhhccC--CcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhhh-----HHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQ 582 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~~-----~~~l~~ll~~ 582 (1866)
.+|..++.+++.++..+.++ .+.++.+++.+...+.++ +..++..+..|+..++....... ...+-..+..
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~ 224 (876)
T 1qgr_A 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (876)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 69999999999999765321 345778889999999887 68899999999887765433211 1222223333
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh-hc-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC------------
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------ 648 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~-~~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~------------ 648 (1866)
+..++++.+|..+..+|..++...+..... .. .+++.+.....+. +...|..++..+..+++...
T Consensus 225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 446677889999999999999865422111 12 5777777766553 56778888888888876531
Q ss_pred ---------cCchhcHHhHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 649 ---------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 649 ---------~~~~p~v~~llp~ll~~~~-------D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
....+++..++|.++..+. |.+..+|.++..++..++..++...+..++|.+...+.+++|++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHH
Confidence 1123456788898888875 346789999999999999988866678899999999999999999
Q ss_pred HHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 713 QSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
.+++.+|+.++.+.+ +.+..+++.++|.++..++|+++.||.+|++++++++..+....
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------------------- 443 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA-------------------- 443 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT--------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc--------------------
Confidence 999999999999876 66777889999999999999999999999999999998664210
Q ss_pred HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC------------CCcchhhhHhhhhH
Q 000201 792 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLP 859 (1866)
Q Consensus 792 ~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~------------~~~~l~~~~~~ll~ 859 (1866)
...+.+..++|.+.+.+.+. +.+|..++.++++++...+ ....+.||++.+++
T Consensus 444 --------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 444 --------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp --------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 00123445666666666664 7888888888888887643 12357899999999
Q ss_pred HHHHHhcCC---CHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhccc----------CCC----HHHHHHHHHHH
Q 000201 860 EVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGL 919 (1866)
Q Consensus 860 ~L~~~l~d~---~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~----------~~~----~~~R~~a~~~L 919 (1866)
.+...+.+. ...+|..+..+++.++...|.+ +...++|.+++.+.. +.+ ...|..++.++
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 588 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Confidence 999999865 4689999999999999999876 344677777666542 111 23466778889
Q ss_pred HHHHHHhC-hh---HHHHHHHHHHHHhccCC--hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHH
Q 000201 920 SEVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRD 992 (1866)
Q Consensus 920 ~~l~~~~g-~~---~l~~ll~~l~~~l~~~~--~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~ 992 (1866)
+.++..+| .. +++.++|.++..+.+.. +.+|+.++.+++.++...|..|.||++.++|.+...+.+. ++.+|.
T Consensus 589 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 589 QNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999888 44 56788888888887764 5799999999999999999999999999999999998876 788888
Q ss_pred HHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHH
Q 000201 993 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1072 (1866)
Q Consensus 993 ~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1072 (1866)
.+..++..++..++.. +.|
T Consensus 669 ~a~~~l~~l~~~~~~~----~~~--------------------------------------------------------- 687 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSN----IIP--------------------------------------------------------- 687 (876)
T ss_dssp HHHHHHHHHHHHHGGG----GHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHh----hhh---------------------------------------------------------
Confidence 8887777766554321 101
Q ss_pred HhchhhhHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-----------HHHH
Q 000201 1073 VLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERR 1139 (1866)
Q Consensus 1073 ~lg~~~~~~vl~~L~~~~~D--~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-----------~~~R 1139 (1866)
+.+.+++.+...+.+ .+..+|..++.+++.++...+..+.++++.+++.+...+..+. ..+|
T Consensus 688 -----~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 688 -----FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp -----HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 011222222222222 3456889999999999987788888899999999988876442 2788
Q ss_pred HHHHHHHHHHHHHhccc-------------cccchHHHHhcccCCC--CccchhhHHHHHHHHHHhhchhhHHhh-HhhH
Q 000201 1140 QVAGRALGELVRKLGER-------------VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1203 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~~~-------------~l~~llp~L~~~L~d~--~~~vr~~a~~~L~~li~~~~~~~l~~~-l~~l 1203 (1866)
..+..++..++..++.. .++.+++.+.....++ +..+|..++.+++.++...+...+.+| .+.+
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 842 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM 842 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHH
Confidence 99999999998887641 2345555555444566 668999999999999888865356666 5677
Q ss_pred HHHHHH-hhcCCcHHHHHHHHHHHHHHHH
Q 000201 1204 IPTIRT-ALCDSILEVRESAGLAFSTLFK 1231 (1866)
Q Consensus 1204 l~~l~~-~L~d~~~~vr~~A~~al~~l~~ 1231 (1866)
++.+.. .+.|+++++|..|+.+++.+.+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 877777 8899999999999999998865
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=379.20 Aligned_cols=751 Identities=12% Similarity=0.118 Sum_probs=558.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC--ChhHHH-HHHHHHhc-ccc------------cc-CCc
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TFV------------NT-VDA 808 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~--~~~vr~-al~~L~~~-~~~------------~~-~~~ 808 (1866)
.++++.+|..|...|.++.+. ....+.+.+...+.+. +..+|. |...+-.. ... .. ++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 567889999999999886542 1234555666666543 456774 33333221 100 11 344
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC-CHhHHHHHHHHHHHHHhhc
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l~~~~ 887 (1866)
.....+.+.+...+.+.+..+|..++++++.++..... ...++.+++.+...+.++ ++.+|..++.+++.+.+.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p----~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP----HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG----GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566777888889899999999999999999874211 124678999999999988 9999999999999999977
Q ss_pred CCC------ChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHH
Q 000201 888 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 955 (1866)
Q Consensus 888 g~~------~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~ 955 (1866)
+++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ..+.+++.+.+.+.++++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 644 45667787877777652 5679999999998765433321 23457777777888889999999999
Q ss_pred HHHHhhhhhchhhHhHHH-HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc--------------------ccchhchH
Q 000201 956 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1014 (1866)
Q Consensus 956 ~l~~L~~~~g~~f~~~l~-~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~--------------------~~~i~~ll 1014 (1866)
++..+....+..|.+|+. .+++.++..+.|.++.+|..+++.+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888776531 11223455
Q ss_pred HhHhcccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH
Q 000201 1015 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1087 (1866)
Q Consensus 1015 p~l~~~l~-------d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~ 1087 (1866)
|.+...+. +++|.+|..+...++.+... +|......+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 55544432 34577777777777665433 23333445566666
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-----ccccch
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1161 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~-----~~l~~l 1161 (1866)
..+++.+|.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++..++. ..++.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 66778899999999999999998764 777889999999999999999999999999999999988764 357888
Q ss_pred HHHHhcccCCCCccchhhHHHHHHHHHHhhc---hhhHHhhHhhHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1162 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1162 lp~L~~~L~d~~~~vr~~a~~~L~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
+|.+...+.++ +.+|..+|.++..++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....+..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99888888876 8899999999999988765 35677899999999999887 445789999999999999887754
Q ss_pred ---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHH
Q 000201 1237 ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 1313 (1866)
Q Consensus 1237 ---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 1313 (1866)
.+..++|.+++.|.+....+. ++++.....- ...+......+++.+....|..+.+|++.++
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~------~i~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 599 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDE------NQLTLEDAQS---------LQELQSNILTVLAAVIRKSPSSVEPVADMLM 599 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCG------GGCCHHHHHH---------HHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhc------ccCChhhHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 244556655554432100000 0000000000 0001112345677788888888899999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHhHhhhccch---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHH
Q 000201 1314 PALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 1389 (1866)
Q Consensus 1314 ~~L~~~l~~~~~-~vr~~a~~~l~~l~~~~~~---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~ 1389 (1866)
+.++..+.+.+. .+|+.+..+++.++...+. ++++.+++.+...++++++.+|..++.+++.++...+..+.+|.+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 679 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH
Confidence 999999987766 8999999999998876654 457889999999888888999999999999999888888999999
Q ss_pred HHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhcCCcch---hhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCc
Q 000201 1390 NMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 1464 (1866)
Q Consensus 1390 ~il~~L~~ll~d~~--~~v~~~A~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 1464 (1866)
.+++.++..+.+++ ..+|..+..+++.++...+... ++.+++.+.+.+.... |. +
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~----~- 739 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---------------EN----G- 739 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---------------SS----S-
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC---------------CC----C-
Confidence 99999999998764 8899999999999998766543 3333333333322100 00 0
Q ss_pred cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHh
Q 000201 1465 QPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1465 ~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~--~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~al~~L~~L~~~ 1539 (1866)
+.-.. .....+|..++.+++.++...+ +..+.+|+..+++.+.+.+.+. +++.+|.+++.+++.++..
T Consensus 740 d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 740 TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 00000 0013478889999999998774 2679999999999998888653 1789999999999999999
Q ss_pred c-CCCCCCchH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000201 1540 G-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 1578 (1866)
Q Consensus 1540 ~-~~~~~~~lp-~L~~~l~~~l~d---~~~~vR~~Aa~aLg~L~ 1578 (1866)
+ |..+.+|++ ++++.+++.+.. .+..++..|..+++.+.
T Consensus 813 ~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 813 FPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9 888999999 999999998873 46789999999999874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=383.38 Aligned_cols=754 Identities=15% Similarity=0.159 Sum_probs=546.2
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC--ChhHHHHHHHHHhccc--------------ccc
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTF--------------VNT 805 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~--~~~vr~al~~L~~~~~--------------~~~ 805 (1866)
+..+.++++.+|..|...|.++... ....+.+.|+..+.++ +..+|.....+..... -..
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887542 2345666666666553 3567742222221100 012
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 883 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l 883 (1866)
........+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 334455666777888888877778 889999999987421 1245788999999999998 999999999999999
Q ss_pred HhhcCC----CChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhChh----HH-HHHHHHHHHHhccCChhHHhHH
Q 000201 884 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV----YF-EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 884 ~~~~g~----~~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g~~----~l-~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
++..++ .+++.+++.+...+.+++ +..+|..++.+++.++..++.. .+ +.+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987653 356778888888887653 5678999999998887654432 11 2467777777888899999999
Q ss_pred HHHHHHhhhhhchhhHhHHH-HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc--------------------c----
Q 000201 954 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT--------------------T---- 1008 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l~-~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~--------------------~---- 1008 (1866)
+.+++.+....+..|.||+. .+++.++..+.+.++++|..+++.+..+...... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred chhchHHhHhcccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHH
Q 000201 1009 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1081 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~-------d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~ 1081 (1866)
.+..++|.+...+. +++|++|.++...++.+... .|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 11234444433331 45677777777777666433 22233445
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000201 1082 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1155 (1866)
Q Consensus 1082 vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~----- 1155 (1866)
+++.+...+.|.+|.+|.+|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 66666666789999999999999999998765 667788999999999999999999999999999999988764
Q ss_pred ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhc-------------hhhHHhhHhhHHHHHHHhhcCC---cHHHH
Q 000201 1156 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1219 (1866)
Q Consensus 1156 ~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---~~~vr 1219 (1866)
..++.+++.+...+.++ +.+|..++.+++.++..++ +..+.+|++.+++.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 45678888888888875 8889999999999887654 1246789999999999988765 45789
Q ss_pred HHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhcccc---ccchhhhhhhhcCCccchhHHH
Q 000201 1220 ESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHA 1293 (1866)
Q Consensus 1220 ~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~---~ilp~Lip~L~~~~~~~~~~~a 1293 (1866)
..+.++++.+....|.. .+..++|.+++.+.. .+..... .--+...+. +......+
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-------------~~~~~~~~~~~~d~~~~~~-----~~~~~~~~ 587 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ-------------VLQMESHIQSTSDRIQFND-----LQSLLCAT 587 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH-------------HHTTTTSCCSTTHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHH-------------HHHHHhccCChhhHHHHHH-----HHHHHHHH
Confidence 88999999998877753 233455555544421 0000000 000000000 00112345
Q ss_pred HHHHHHHhC-CCchhhHhhHHHHHHHhcCCCC--HHHHHHHHHHHhHhhhccch---hcHHHHHHHHHhccCCC-chhHH
Q 000201 1294 LGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN-QASIR 1366 (1866)
Q Consensus 1294 l~~La~~~g-~~l~~~l~~il~~L~~~l~~~~--~~vr~~a~~~l~~l~~~~~~---~~~~~ll~~L~~~l~~~-~~~vR 1366 (1866)
++.+....| ..+.+|++.++|.++..+.+.. ..+++.+..+++.++...+. ++++.+++.+...+.+. ++.+|
T Consensus 588 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr 667 (876)
T 1qgr_A 588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC 667 (876)
T ss_dssp HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 666776778 7888999999999999998764 47899999999998876543 45788888888888775 78999
Q ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcCCcch---hhhhHHHHHHHHhhhh
Q 000201 1367 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSR 1441 (1866)
Q Consensus 1367 ~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~A~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~ 1441 (1866)
..++.+++.++...+..+.+|.+.+++.++..+.+ .+..++..+..+++.++...+.+. ++.+++.+.+.+....
T Consensus 668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~ 747 (876)
T 1qgr_A 668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQV 747 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccC
Confidence 99999999999877788999999999999999986 467899999999999987665442 3333333333221000
Q ss_pred hhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh---------hhhhhhhhhhhHH
Q 000201 1442 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFVIPITGP 1512 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~---------~~l~~~v~~i~~~ 1512 (1866)
+ .. + +-..+. ...+|..+..+++.++...+. ..+.||++.+++.
T Consensus 748 --------~-----------~~-d---~~~~~~----~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 800 (876)
T 1qgr_A 748 --------D-----------KS-D---YDMVDY----LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSF 800 (876)
T ss_dssp --------C-----------TT-C---HHHHHH----HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHH
T ss_pred --------C-----------CC-C---hHHHHH----HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHH
Confidence 0 00 0 000000 125777888888888776532 4688999999877
Q ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHHHhcCC-CCCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 000201 1513 LIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALS 1581 (1866)
Q Consensus 1513 Li~~l~~~~-~~~vr~~al~~L~~L~~~~~~-~~~~~-lp~L~~~l~~-~l~d~~~~vR~~Aa~aLg~L~~~~ 1581 (1866)
+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.
T Consensus 801 l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 801 IDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 777666543 689999999999999999988 77777 5778888888 999999999999999999997654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=372.18 Aligned_cols=565 Identities=18% Similarity=0.223 Sum_probs=446.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
.+..++..+ .++++.+|..|+..+..++...|+... ...++++|.+.. ++++..|..+..+++.+....+. ..+
T Consensus 11 ~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHH
Confidence 355666666 456789999999999999887776554 346889988766 34567888888877766655443 346
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
...++|.+.....|++..||..|.+++..++..+++..+ +.++|.+.+...+++|..|..++.+++.++...+...
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--- 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--- 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH---
Confidence 778999998888999999999999999999999888766 5677777777788899999999999999988876543
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhh
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 813 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 813 (1866)
.+.++|.+..+++|+++.||.+|+.+|+.+++.++.+.+ ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 457889999999999999999999999999987654221 123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-h
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 892 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~ 892 (1866)
++|.+...++|.++.+|..|+..++.++..++. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++. .
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 455555555666677777777777777765432 23445677888888888888888888888888888776542 3
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
+.++|.+...+.+ .++.+|..++.+++.++..+|.+ +++.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 5677777776654 44568888888888888877754 56778888888889999999999999999999999875
Q ss_pred hHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc-hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~-i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
. +.+.++|.+...+.|++++||..++.++..+...++... .+.++|.+...+.|++|++|..+++.++.+...++
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 434 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-- 434 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--
Confidence 4 467788999999999999999999999998887765432 35688998888899999999999999998764432
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhh-hHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1125 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~-~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~ 1125 (1866)
.+. .+.+++.+...+.|.++.||..|+.+++.++...+.. .+++.+++
T Consensus 435 -----------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 435 -----------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp -----------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 111 1346667777788999999999999999998765542 24567777
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHH
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1204 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll 1204 (1866)
.+...+.++++.+|..++.+++.++..++.. +.+.++|.+...+.|+++++|..++.+++.+....++... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 7777788899999999999999999888765 5688999999999999999999999999999877665432 25778
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1205 PTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1205 ~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
|.+...+.|.+++||..|..+++.+
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 8888888999999999999998765
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=346.82 Aligned_cols=557 Identities=17% Similarity=0.203 Sum_probs=452.5
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcchHHH
Q 000201 460 RALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 538 (1866)
Q Consensus 460 ~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l 538 (1866)
..+.++++.+|..+......+....|. ..++.++|.+...++ . ++.+|..+...++.++.+++.. .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d---~----~~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY---D----EDEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCC---C----CHHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcC---C----cHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 356789999999998887776665554 456788888876641 1 1579999999999888776543 346778
Q ss_pred HHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchH
Q 000201 539 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 617 (1866)
Q Consensus 539 ~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii 617 (1866)
++.+...+.++++.++..+..++..+..... +.....+..++..+.+++++..|..|+..++.++...+... ...++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 8888887888889999999999887776554 22344555667777778888899999999999887765432 24688
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhH
Q 000201 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 696 (1866)
Q Consensus 618 ~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~l 696 (1866)
+.+.+.+.++ ++.+|..|+.+++.+++..+. +.+...++|.+...+.|+++.||..|..++..++..+++... +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888887764 689999999999999988774 355678999999999999999999999999999998887654 778
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-----h
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----E 771 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~ 771 (1866)
+|.+...+++++|++|..++.+|+.++...+... ..+.++|.+.++++|+++.||..|+++|+.++..++.. .
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 9999999999999999999999999998754432 34578999999999999999999999999999887643 4
Q ss_pred HHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 772 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 772 i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
...++|.+...+.|+++.+|. ++..+......- ........++|.+...++|.++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH----
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH----
Confidence 578999999999999999985 333333311000 01123467889999999999999999999999999876532
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.++|.++..+.+ ....+|..++.+++.++..+|.+
T Consensus 397 ~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch
Confidence 234577899999999999999999999999999999987744 5788988888765 44669999999999999999987
Q ss_pred -HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 930 -YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 930 -~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..+.+++..+...++..
T Consensus 476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh
Confidence 557889999988888999999999999999999998764 88999999999999999999999999999998877655
Q ss_pred ch-hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1009 SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1009 ~i-~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.. +.++|.+.....|.+|.+|..+.+.++.+
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 43 45788888888999999999999888764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=266.95 Aligned_cols=312 Identities=26% Similarity=0.471 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC--cC
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 650 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~--~~ 650 (1866)
...+..+++.+..++ ...|+.++..++.++.+.+........++..+.+.+.++++. ++|+.++..|++..+ ..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 13 IKVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 344555666666544 578899999999998865433332357888999999988766 999999999997665 46
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
++||+..++|.++..+.|....||++|..++..++..++++.++.++|.++.+|.+. .|+.|.+|+.+++.+++.+|++
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 899999999999999999999999999999999999999999999999999999765 6999999999999999999999
Q ss_pred HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcc
Q 000201 730 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 809 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 809 (1866)
+...+|+++|.+..++.|.+++|..+|..++..++..+.|..+..++|.|++++.+| +.+.+|+..|.+++|+..++.|
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~ 247 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPA 247 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHH
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecch
Confidence 999999999999999999999999999999999999999999999999999999999 4588999999999999999999
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcC
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g 888 (1866)
.++.++|.|.++|++++..++++++-++.|||+.+.++.+..+|++.++|++.+.... .+|++|+.+.+++..+.+..+
T Consensus 248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999997763 679999999999999988655
Q ss_pred C
Q 000201 889 E 889 (1866)
Q Consensus 889 ~ 889 (1866)
.
T Consensus 328 ~ 328 (986)
T 2iw3_A 328 V 328 (986)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-17 Score=232.44 Aligned_cols=710 Identities=10% Similarity=0.106 Sum_probs=420.4
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-cC-
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR- 446 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~-~~- 446 (1866)
+..++....++++.+| |.+.|..+ +..|+.+..++.-+. . .. .+.++|..+++.|++.... +.
T Consensus 7 l~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~----~---~~-----~~~~vR~~A~i~lkn~i~~~w~~ 71 (960)
T 1wa5_C 7 VAKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIA----S---TN-----LPLSTRLAGALFFKNFIKRKWVD 71 (960)
T ss_dssp HHHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHH----C---TT-----SCHHHHHHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHh----c---CC-----CCHHHHHHHHHHHHHHHHhcCCC
Confidence 4566766778888888 77777666 667876644333331 1 11 1357999999999987653 33
Q ss_pred --------CCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHH
Q 000201 447 --------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 518 (1866)
Q Consensus 447 --------~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av 518 (1866)
+++...+-..++.... +.+..||..+..+...+.....++.|+.+++.+-..+++++ ...+.+++
T Consensus 72 ~~~~~~l~~~~k~~ik~~ll~~l~-~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL 144 (960)
T 1wa5_C 72 ENGNHLLPANNVELIKKEIVPLMI-SLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVL 144 (960)
T ss_dssp SSSCBSSCHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHH
Confidence 2222334445544333 33488999999888888777667899999998888876532 34678899
Q ss_pred HHHHHHhhhhcc--CC----cc----hHHHHHHHHH-------hcCCCcHH---HH------HHHHhhhhhhhH-hhh--
Q 000201 519 IFTGALAKHLAK--DD----PK----VHAVVDKLLD-------VLNTPSEA---VQ------RAVSSCLSPLMQ-SMQ-- 569 (1866)
Q Consensus 519 ~~l~~i~~~l~~--~~----~~----~~~l~~~l~~-------~l~~~~~~---v~------~~~~~~l~~lv~-~~~-- 569 (1866)
.++..+++.+.. .. +. +...++.++. .+.++... ++ ..+++++..+.. ...
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 999999976542 11 01 2223332222 24443221 22 223333322211 001
Q ss_pred --hhhHHHHHHHHHHHHcC----------CC----hhHHHHHHHHHHHHHhhhCcchhhh--cchHHHHHHHHh----CC
Q 000201 570 --DEAPTLVSRLLDQLMKS----------DK----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLA----DR 627 (1866)
Q Consensus 570 --~~~~~~l~~ll~~L~~~----------~~----~~~R~~A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~----~~ 627 (1866)
+.....++.++.-+... .+ +..|+.+..++..++...+ +.+.. ..+++.+.+.+. ..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~~f~~~~~~~~~~~~~~l~~~~~~~ 303 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-DVFGPMINEFIQITWNLLTSISNQP 303 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHCCSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 12233333233323210 00 3467888888888876543 22211 134444444443 12
Q ss_pred CcHHHHHHHHHHHHHHHHHh--CcCch--hcHHhHH-HHHHHHcC-----------------------CCCHHHHHHHHH
Q 000201 628 NSAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAEC 679 (1866)
Q Consensus 628 ~~~~~r~~al~al~~L~~~l--~~~~~--p~v~~ll-p~ll~~~~-----------------------D~~~~VR~~a~~ 679 (1866)
.+...+..++..+..+++.. ...|. +++.+++ +.++..+. +....+|.+|..
T Consensus 304 ~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 304 KYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp TSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHH
Confidence 33455666666666665432 23454 7888777 56666542 112368999999
Q ss_pred HHHHHHHhhcHhhHHhHHHHHHhhcC------CCChhhHHHHHHHHHHHHhhC--hh-hHHh-----hhcch-hHHHhhh
Q 000201 680 AARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEV 744 (1866)
Q Consensus 680 al~~i~~~l~~~~v~~llp~L~~~L~------~~~w~~r~~a~~~L~~l~~~~--~~-~~~~-----~l~~i-v~~l~~~ 744 (1866)
++..++...+...++.+++.+.+.+. +.+|+.|.+|+.++|.++.+. .+ .... .+..+ ...+...
T Consensus 384 ~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~ 463 (960)
T 1wa5_C 384 FLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD 463 (960)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH
Confidence 99999998875556777887777776 678999999999999998642 11 1111 12222 2234455
Q ss_pred ccCC---ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHh
Q 000201 745 LTDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 821 (1866)
Q Consensus 745 L~D~---~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~ 821 (1866)
++|+ +|.||..|++++++++..+....+.. ++|.+.++
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~ 504 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATF 504 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHH
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHH
Confidence 6777 99999999999999998763222333 44445555
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcC---------CCcchhhhHhhhhHHHHHHhcCCC---H--hHHHHHHHHHHHHHhhc
Q 000201 822 LRERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 822 l~d~~~~vr~~a~~~l~~l~~~l~---------~~~~l~~~~~~ll~~L~~~l~d~~---~--~vR~~a~~aL~~l~~~~ 887 (1866)
+.+.+..||..|+.++.+++.... ....+.||++.+++.|..++.... . .....+..+++.++...
T Consensus 505 L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 505 LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 556667888999999999987432 235688999999999999988741 1 13467899999999988
Q ss_pred CCC---ChhhHHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHH
Q 000201 888 GEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTL 956 (1866)
Q Consensus 888 g~~---~~~~l~~~L~~~L~----~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~ 956 (1866)
+++ |+..+++.+...+. +..+...+...+.+++.++...+.+ ..+.++|.+...+........+.++..
T Consensus 585 ~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i 664 (960)
T 1wa5_C 585 EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664 (960)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 866 55566666665543 3344556667889999998886654 445677777776666656677778888
Q ss_pred HHHhhhhhchhhHhHHHHHHHHHH--hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 957 FKYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 957 l~~L~~~~g~~f~~~l~~il~~ll--~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
+..+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...+.. ++ . +
T Consensus 665 ~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~-------- 719 (960)
T 1wa5_C 665 IAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--L-------- 719 (960)
T ss_dssp HHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--S--------
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--H--------
Confidence 88777666 667778888888777 5544321 22 12222222222211110 00 0 0
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
+.++..+.....+.. .+..|..+++.++.+.|.
T Consensus 720 ---------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~ 752 (960)
T 1wa5_C 720 ---------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDM 752 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCH
T ss_pred ---------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCH
Confidence 001111111112222 237788899999988887
Q ss_pred h-HHHhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhccccc--------cc-hHH----HHhcccCC-CCccchh
Q 000201 1115 T-LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL--------PS-IIP----ILSRGLKD-PSASRRQ 1178 (1866)
Q Consensus 1115 ~-l~~~l~~l~~~L~~~l~~~-~~~~R~~A~~~L~~lv~~~~~~~l--------~~-llp----~L~~~L~d-~~~~vr~ 1178 (1866)
. +.+|+|.+++.++..+... ....+...+..++.++...++... +. +.. .+...+.. ....-|.
T Consensus 753 ~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk 832 (960)
T 1wa5_C 753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRK 832 (960)
T ss_dssp HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHH
Confidence 7 9999999999999998755 455665666666665555444211 11 111 11111111 2234566
Q ss_pred hHHHHHHHHHHhh--chhhHHhhHhhHHHHHHHhhc
Q 000201 1179 GVCIGLSEVMASA--GKSQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1179 ~a~~~L~~li~~~--~~~~l~~~l~~ll~~l~~~L~ 1212 (1866)
-++.++..++... .+....+.+..++..+...+.
T Consensus 833 ~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 6777777766543 022333445555555555443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-18 Score=239.67 Aligned_cols=718 Identities=13% Similarity=0.125 Sum_probs=416.2
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcCCcc
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 365 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~~~~ 365 (1866)
..+.++|+.+++||+..|++|++.|+++. .+ |....+...+. ..+.+..+|-.| ...|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~---~~--p~~w~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAE---AS--PQAWQFSWQLM--QLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTT---TS--THHHHHHHHHT--CTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---cC--HHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 34667788889999999999999999875 11 21222222222 234455555433 35687655444
Q ss_pred CCCh-hhhhhhcCC---CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000201 366 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 440 (1866)
Q Consensus 366 ~~~~-~~ll~~l~~---~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 440 (1866)
...+ ..+++.+.+ ....+|.+.+++++.+... || .|++.+..+++..... .. +..+ +...+......|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~--~~-~~~~-~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQ--RM-PNVS-ADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHT--C-----C-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcc--cc-ccCC-CHHHHHHHHHHHHH
Confidence 4445 566665544 3589999999999998644 66 6666667776554221 00 0000 11245555555555
Q ss_pred hhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCC--ChhhhhhHHHHHH
Q 000201 441 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 518 (1866)
Q Consensus 441 ~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~--~~~~~~~vr~~av 518 (1866)
+++.+ +.+ . -.++...++.. + ..+.+.++++|..++..... .++....++..++
T Consensus 155 l~EEi--------~~~---~-~~~~r~~~~~~--------l----~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEA--------QVI---H-TSVKRVVLRAE--------I----AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHH--------HHC---C-CSSCHHHHHHH--------H----HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHH--------hcc---C-cHHHHHHHHHH--------H----HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 54321 100 0 01111112111 1 12345666667666653221 1111236888888
Q ss_pred HHHHHHhh--hhccCCcchHHHHHHHHHhc----------------CCCcHHHHHHHHhhhhhhhHhhh-h----hhHHH
Q 000201 519 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-D----EAPTL 575 (1866)
Q Consensus 519 ~~l~~i~~--~l~~~~~~~~~l~~~l~~~l----------------~~~~~~v~~~~~~~l~~lv~~~~-~----~~~~~ 575 (1866)
.++..... .++.. ....+++.++. + .+++++++..+++|+..++.... . .....
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 88877665 23322 23456666665 4 11456889999999888775321 1 12222
Q ss_pred HHHHHH---HH---HcCCCh---hHHHHHHHHHHHHHhhhCcchh-------------hhcchHHHHHHHHhC----CCc
Q 000201 576 VSRLLD---QL---MKSDKY---GERRGAAFGLAGVVKGFGISSL-------------KKYGIAATLREGLAD----RNS 629 (1866)
Q Consensus 576 l~~ll~---~L---~~~~~~---~~R~~A~~~L~~l~~~~g~~~l-------------~~~~ii~~L~~~i~~----~~~ 629 (1866)
++.++. .+ ..+++. ...+..+..+..+.... ...+ ....+++.|.+.... ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 366 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH-STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE 366 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence 322222 11 122332 44555555555554321 1111 011355555555433 234
Q ss_pred HHHHHHHHHHHHHHHHHh-C-----------cCchhcHHhHHHHHHHHcCCCC---------------HHHHHHHHHHHH
Q 000201 630 AKRREGALLAFECLCEKL-G-----------RLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAAR 682 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l-~-----------~~~~p~v~~llp~ll~~~~D~~---------------~~VR~~a~~al~ 682 (1866)
......++..+..+++.. . ..+.|++..+++.++..+.-++ ...|.++.+++.
T Consensus 367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~ 446 (971)
T 2x1g_F 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM 446 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence 456777777777777632 1 2346778888888887763221 257888999999
Q ss_pred HHHHhhcHhhHHhHHHHHHhhcCC-----CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc-cCCChHHHHHH
Q 000201 683 AMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAG 756 (1866)
Q Consensus 683 ~i~~~l~~~~v~~llp~L~~~L~~-----~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L-~D~~~~VR~aA 756 (1866)
.++..++...+..+++.+.+.+.+ .+|+.|.+++.+++.+++++.......++.+++.+..+. .|.++.||..+
T Consensus 447 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 447 YCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 998877755557777777766654 789999999999999999988766677788888544444 26799999999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQI 836 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~ 836 (1866)
+++++++++++.+. + ..+..++|.+.+++ + +.++..|+.+
T Consensus 527 ~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~a 566 (971)
T 2x1g_F 527 LETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATLG 566 (971)
T ss_dssp HHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHH
T ss_pred HHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHHH
Confidence 99999999876521 0 12233445555555 2 4678889999
Q ss_pred HHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcc----cC
Q 000201 837 VGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SD 906 (1866)
Q Consensus 837 l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~----~~ 906 (1866)
+.++++.. ...+.||++.++..+...+.. .....+..+..+++.++...+++ ++..+++.++..+. +.
T Consensus 567 l~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 644 (971)
T 2x1g_F 567 LKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQAD 644 (971)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999854 357889999999999999987 35789999999999999987633 44555555554332 22
Q ss_pred C-CHHHHHH---HHHHHHHHHHHhCh------------h----HHHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhh
Q 000201 907 N-SNVERSG---AAQGLSEVLAALGT------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSL 964 (1866)
Q Consensus 907 ~-~~~~R~~---a~~~L~~l~~~~g~------------~----~l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~ 964 (1866)
. +...+.. ....|+.++..++. + +++.++|.+...+.. .+..+.+.++.+++.++..+
T Consensus 645 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 645 SKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 1 2223333 33445555555542 1 345677766666543 36789999999999999999
Q ss_pred chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhc
Q 000201 965 GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 965 g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~ 1044 (1866)
|.+|.||++.+++.++..+..... ..++..+..++..++... .++....+++..+..
T Consensus 725 ~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~~--- 781 (971)
T 2x1g_F 725 RSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFIQ--- 781 (971)
T ss_dssp HC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHHH---
T ss_pred hhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHHH---
Confidence 999999999999999988765322 235555555555443310 000000011111100
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHhhcChhhHH--Hh
Q 000201 1045 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--EI 1119 (1866)
Q Consensus 1045 ~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~---~~D~~~~vR~~A~~~l~~l~~~~p~~l~--~~ 1119 (1866)
.++..+... ..+..+.+++.....+..+..+.|..+. +.
T Consensus 782 ------------------------------------~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~ 825 (971)
T 2x1g_F 782 ------------------------------------HSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTL 825 (971)
T ss_dssp ------------------------------------HHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTS
T ss_pred ------------------------------------HHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcc
Confidence 000000000 0112467899999999999998887664 56
Q ss_pred -HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000201 1120 -MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1152 (1866)
Q Consensus 1120 -l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~ 1152 (1866)
++.+++..+..+..++.....+++.++..++..
T Consensus 826 ~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 826 AYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp CHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 788888888888777766677788888887655
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-17 Score=230.74 Aligned_cols=712 Identities=13% Similarity=0.161 Sum_probs=431.8
Q ss_pred hhHHHHHhh-hcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcCCc
Q 000201 294 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYD 364 (1866)
Q Consensus 294 ~~~~~~l~~-~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~~~ 364 (1866)
.++.++|++ ..+||+..|++|++.|+++. .++ ....+...+. ..+.+..+|..| ...|.....+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~---~~p--~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQ---VSP--QAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HST--THHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCH--HHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 346677777 45799999999999998865 111 1122222221 224455555433 3568765544
Q ss_pred cCCCh-hhhhhhcCC---CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000201 365 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439 (1866)
Q Consensus 365 ~~~~~-~~ll~~l~~---~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 439 (1866)
-...+ ..+++.+.+ ....+|.+.+.+++.+.. .||+.|++.+..+.+.... ..+. ..+...+......|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~----~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA----EDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh----hccC-CCcHHHHHHHHHHHH
Confidence 44445 566665544 368999999999999864 4676677777777664311 0000 001123444555555
Q ss_pred HhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHH
Q 000201 440 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 519 (1866)
Q Consensus 440 ~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~ 519 (1866)
.+++.+..... ..-|+. .++..=..+.+.+++.|..++....+. ..++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~-------~~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKG-------LVRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Confidence 55432111100 001110 001000234577888888888653321 247777888
Q ss_pred HHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHH----------cCCC
Q 000201 520 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSDK 588 (1866)
Q Consensus 520 ~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~----------~~~~ 588 (1866)
++..... ++........+++.+++.+.+ ++++..+++|+..++.... ......+..++..+. ..++
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQD--SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTTS--TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhCC--chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 7765443 222111126677888877754 4588888899887765321 112233333333222 1233
Q ss_pred hhHHHHHHHHHHHHHhhhCcchh--------hhcchHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHh---------
Q 000201 589 YGERRGAAFGLAGVVKGFGISSL--------KKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL--------- 647 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g~~~l--------~~~~ii~~L~~~i~~----~~~~~~r~~al~al~~L~~~l--------- 647 (1866)
....+..+..+..+..... ..+ ....+++.+.+.... ..++.....++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 380 (963)
T 2x19_B 302 METSHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQA 380 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhH
Confidence 3444444555554443211 111 011455566555553 123345666677777777632
Q ss_pred --CcCchhcHHhHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc----CC
Q 000201 648 --GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----ED 706 (1866)
Q Consensus 648 --~~~~~p~v~~llp~ll~~~~D~~~---------------~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L----~~ 706 (1866)
...+.|++.++++.++..+.-++. ..|.++.+++..++...+...+..+++.+.+.+ .+
T Consensus 381 ~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 460 (963)
T 2x19_B 381 VYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP 460 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC
Confidence 134567888888888877643221 347788888988888777666677777777777 67
Q ss_pred CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC
Q 000201 707 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786 (1866)
Q Consensus 707 ~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~ 786 (1866)
.+|+.|.+++.++|.+++++.......++.+++.+..+ .++++.||..++++++++++++...
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~---------------- 523 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH---------------- 523 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC----------------
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 89999999999999999997765555667777765544 4468999999999999998765321
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
...+..+++.+...+.+ +.++..|+.++.+++... .+.+.||++.+++.+...+.
T Consensus 524 ---------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 524 ---------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp ---------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhc
Confidence 01223345555555544 578889999999999854 35688999999999999887
Q ss_pred C--CCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcc----cCCCHHHH---HHHHHHHHHHHHHhCh-----
Q 000201 867 D--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVER---SGAAQGLSEVLAALGT----- 928 (1866)
Q Consensus 867 d--~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~----~~~~~~~R---~~a~~~L~~l~~~~g~----- 928 (1866)
. -....|..+..+++.++...+++ ++..+++.+.+.+. +..+...+ .....+|+.+++.++.
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 5 35789999999999999877622 45566665555443 22223233 3556777888887762
Q ss_pred ----------------h----HHHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccC-
Q 000201 929 ----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD- 985 (1866)
Q Consensus 929 ----------------~----~l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d- 985 (1866)
+ .++.++|.+...+.. .++.+.+.++.+++.++..+|..|.||++.+++.++.....
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 659 DHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC
Confidence 1 345566665555432 46789999999999999999999999999998887775433
Q ss_pred CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHH
Q 000201 986 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 986 ~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~ 1065 (1866)
..+ ..+..+..++..++... .+.|
T Consensus 739 ~~~----~~l~l~~~li~~f~~~~--~~~~-------------------------------------------------- 762 (963)
T 2x19_B 739 PQA----SALDLTRQLVHIFAHEP--AHFP-------------------------------------------------- 762 (963)
T ss_dssp CCH----HHHHHHHHHHHHHTTCT--TTCH--------------------------------------------------
T ss_pred Ccc----HHHHHHHHHHHHhCCCc--chHH--------------------------------------------------
Confidence 111 12233333333221110 0000
Q ss_pred HHHHHHHHhchhhhHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHhhcChhhHH--Hh-HHHHHHHHHHhhcCCCHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYM---VRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNTLISSLASSSSERR 1139 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~---~~~D~~~~vR~~A~~~l~~l~~~~p~~l~--~~-l~~l~~~L~~~l~~~~~~~R 1139 (1866)
.+.+. .+.++..++. ..-+..+.+|+.....+..+..+.|..+- +. ++.+++.++..+...+..+.
T Consensus 763 ---~~~~~-----l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 834 (963)
T 2x19_B 763 ---PIEAL-----FLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTV 834 (963)
T ss_dssp ---HHHHH-----HHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHH
T ss_pred ---HHHHH-----HHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHH
Confidence 00000 0011111111 11123578999999999999988886542 34 78888888888998899999
Q ss_pred HHHHHHHHHHHHHhc
Q 000201 1140 QVAGRALGELVRKLG 1154 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~ 1154 (1866)
..++.++..++...+
T Consensus 835 ~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 835 KASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999886543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-17 Score=228.37 Aligned_cols=644 Identities=12% Similarity=0.129 Sum_probs=389.2
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcC--C
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYG--Y 363 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~--~ 363 (1866)
+++.++|.+++|||..+| |+++|++.. ..|.+...+..+.. ..+.+..+|..| ...|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 999998764 12223333333322 223345666554 36786321 1
Q ss_pred ccCC----Ch-hhhhhhcCCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000201 364 DFGT----DY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437 (1866)
Q Consensus 364 ~~~~----~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 437 (1866)
.+++ .+ ..+++.+.++...+|.+.+++++.+.. .||+.|++.+..+++.. ... +...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s~------~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SND------DMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CSS------CTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CCC------CHHHHHHHHHH
Confidence 2332 23 667788888789999999999999864 36666666777776432 111 23577888889
Q ss_pred HHHhhhhcCC----CC----hHHHH--------HHHH--hhhcCCCcH---HHHHHHHHHHHHHHHhh------c-----
Q 000201 438 LHSAADVLRT----KD----LPVIM--------TFLI--SRALADTNA---DVRGRMLNAGIMIIDKH------G----- 485 (1866)
Q Consensus 438 l~~~~~~~~~----~~----~~~~~--------~fli--~~~l~d~~~---~vr~~~~~a~~~~i~~~------g----- 485 (1866)
|..+++.+.. ++ ...++ ..+. ...+.+... .++ ...++...+++.. +
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHH
Confidence 9998876542 11 11111 1110 012343322 233 2222222222111 1
Q ss_pred ccchhhhHHHHHHhhcCCCC---C--h----hhhhhHHHHHHHHHHHHhhhhcc-CCcchHHHHHHHHHhcC-----CCc
Q 000201 486 RDNVSLLFPIFENYLNKKAS---D--E----EKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLN-----TPS 550 (1866)
Q Consensus 486 ~~~~~~ll~~le~~L~~~~~---~--~----~~~~~vr~~av~~l~~i~~~l~~-~~~~~~~l~~~l~~~l~-----~~~ 550 (1866)
.++....++.|-.+|....+ . + .....+|..++.++..++..+.. -.++++.+++.++..+. ..+
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 305 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKY 305 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 12345566666666654211 0 0 01135788888888888743322 23456677777766663 234
Q ss_pred HHHHHHHHhhhhhhhHhhh--------hhhHHHH-HHHHHHHH----------------------cCCChhHHHHHHHHH
Q 000201 551 EAVQRAVSSCLSPLMQSMQ--------DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGL 599 (1866)
Q Consensus 551 ~~v~~~~~~~l~~lv~~~~--------~~~~~~l-~~ll~~L~----------------------~~~~~~~R~~A~~~L 599 (1866)
+.+...+...+..++.... +....++ ..++..+. .++.+..|+.|...|
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 4555555555444332110 1122223 11222221 122346899999999
Q ss_pred HHHHhhhCcchhhhcchHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHhC------c------CchhcHHhHHHHH
Q 000201 600 AGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLG------R------LFEPYVIQMLPLL 662 (1866)
Q Consensus 600 ~~l~~~~g~~~l~~~~ii~~L~~~i~-----~~~~~~~r~~al~al~~L~~~l~------~------~~~p~v~~llp~l 662 (1866)
..++...|...+ ..+++++.+.+. +..+|..|++|+++++.++++.. . .+.+++. ..+
T Consensus 386 ~~l~~~~~~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~---~~v 460 (960)
T 1wa5_C 386 KELKEKNEVLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT---KEI 460 (960)
T ss_dssp HHHHHHCHHHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH---HHT
T ss_pred HHHHHHcchhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH---HHh
Confidence 999988763332 346677766665 24679999999999999987531 1 2333322 223
Q ss_pred HHHcCCC---CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh-----------Chh
Q 000201 663 LVAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQ 728 (1866)
Q Consensus 663 l~~~~D~---~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~-----------~~~ 728 (1866)
+..+.|+ .+.||.++.++++++...+++.....++|.++..|.+++.++|..|+.+|..+++. .++
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~ 540 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGG
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHH
Confidence 3344566 89999999999999999888777799999999999999999999999999998873 245
Q ss_pred hHHhhhcchhHHHhhhccCCC---hH--HHHHHHHHHHHHHhhccc---hhHHhHHHHHHHhhCCCChhHHHHHHHHHhc
Q 000201 729 QLSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQT 800 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~---~~--VR~aA~~aL~~l~~~i~~---~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~ 800 (1866)
.+.++++.+++.++.+++... +. ....+..++..++....+ |++..+++.+...+
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l----------------- 603 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV----------------- 603 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH-----------------
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----------------
Confidence 577888999999988887641 11 345677777777665543 23333333332221
Q ss_pred cccccCCcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 801 TFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 801 ~~~~~~~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
....+ ..+...+..++++++.++.. ..+....++.+.++|.+...+.....+....+...
T Consensus 604 ------------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i 664 (960)
T 1wa5_C 604 ------------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664 (960)
T ss_dssp ------------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred ------------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 11111 23456666788888888875 34456778899999999999987777788888888
Q ss_pred HHHHHhhcC--CCChhhHHHHHH--HhcccCCCHHHHHHHHHHHHHHHHHhChhHH--HHHHHHHHHHhccCChhHHhHH
Q 000201 880 IGSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 880 L~~l~~~~g--~~~~~~l~~~L~--~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l--~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
++.+..... .+++..++|.+. ..+.... .....+..|...+...+.... +.++..+...+.+.. .+..+
T Consensus 665 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a 739 (960)
T 1wa5_C 665 IAFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHG 739 (960)
T ss_dssp HHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchH
Confidence 888887652 125566777776 5554432 122333444444433322211 223322223333333 34789
Q ss_pred HHHHHHhhhhhchh-hHhHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHH
Q 000201 954 LTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1002 (1866)
Q Consensus 954 l~~l~~L~~~~g~~-f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al~~i~ 1002 (1866)
+.+++.++..+|.. |.||++.+++.++..+... .++++...+..+..++
T Consensus 740 ~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 740 FDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 99999999999988 9999999999999988654 4555544444444333
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-18 Score=218.60 Aligned_cols=395 Identities=13% Similarity=0.154 Sum_probs=291.1
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 444 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~--- 444 (1866)
+..++..+.++++.+|+.|.+.|..+... .|+.+..++..+. . . +.+..+|+.++..|++....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~----~----~----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA----N----P----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----T----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH----c----C----CCChHHHHHHHHHHHHhccccch
Confidence 45678788899999999999999887643 4444433322221 1 1 12568999999999998532
Q ss_pred ------------cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhh
Q 000201 445 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 445 ------------~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
++++....+...++. .+.++++.+ ..+..+...+....++ ..|+.+++.+-..+.++. . +.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll~-~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~-~---~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVLQ-TLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-S---TE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHH-HTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-C---CH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHH-HhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC-C---CH
Confidence 233333345555553 566777777 7777776666665555 489999998887776531 0 15
Q ss_pred hHHHHHHHHHHHHhhhhcc--CCcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhh-----hHHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQ 582 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~--~~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ll~~ 582 (1866)
.+|+.++.+++.+++.+.+ ..+.++.+++.+...+.++ ++.++..++.|+..++....+. ...++-..+..
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6999999999999976532 2456788999999999988 7899999999987755433211 22333333444
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh--hc-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh------------
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 647 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l------------ 647 (1866)
+..+.+..+|+.++.+|..++...+. .+. .. .+++.+...+.+. +...|..++..+..+++..
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 55677789999999999999986542 221 12 6778777777664 5678888888888888763
Q ss_pred ---------CcCchhcHHhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 648 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 648 ---------~~~~~p~v~~llp~ll~~~~D-------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
...+++++..++|.++..+.+ .+..+|.++..+++.++..++...++.++|.+.+.+.+++|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456678899999888853 3468999999999999999886556889999999999999999
Q ss_pred HHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-----hhHHhHHHHHHHhh
Q 000201 712 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 783 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~L~~~l 783 (1866)
|.+++.+||.+++++. +.+..+++.++|.+...++|+++.||.+|+++|++++..+.+ +++..++|.+++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999999765 556778899999999999999999999999999999987754 35566677666544
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-18 Score=217.28 Aligned_cols=391 Identities=16% Similarity=0.237 Sum_probs=296.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhh-----------
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 886 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~----------- 886 (1866)
..+.+.+.++|+.|.+.+..+... + .+.....|...+.+ ..+.+|..|...|..+...
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 345567788999999988886541 1 12334444444544 3689999999999988743
Q ss_pred ----cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-HHHHHHHHHHHHhccC--ChhHHhHHHHHHHH
Q 000201 887 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 959 (1866)
Q Consensus 887 ----~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~ 959 (1866)
++++....+...+++.+.++... + ..++.+++.++...+.+ .+++++|.+.+.+.++ ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 23333345667777777765544 5 77888999999887664 7899999999999888 89999999999999
Q ss_pred hhhhh-chhhHhHHHHHHHHHHhhccCC--ChHHHHHHHHHHHHHHHhhccc----c-hhchHHhHhcccCCCchHHHHH
Q 000201 960 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1031 (1866)
Q Consensus 960 L~~~~-g~~f~~~l~~il~~ll~~l~d~--~~~VR~~a~~al~~i~~~~~~~----~-i~~llp~l~~~l~d~~w~vR~~ 1031 (1866)
++..+ +..+.+|.+.+++.++.++.|+ ++.||..+++++..++..+... . .+.+++.+.....+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99876 6677899999999999999988 7899999999998865433211 1 1235676767778889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 000201 1032 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1110 (1866)
Q Consensus 1032 s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~-~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~ 1110 (1866)
+++.++.+....+... + ++.. .+++.+.....|.+..+|..|+..|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999998875532110 0 1122 344444455678888999999999998876
Q ss_pred cC---------------------hhhHHHhHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHhccccccchH
Q 000201 1111 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1162 (1866)
Q Consensus 1111 ~~---------------------p~~l~~~l~~l~~~L~~~l~~-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1162 (1866)
.. ...++++++.+++.++..+.+ .++.+|..|..+|+.++..++..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123345667788888777753 34678999999999999999988889999
Q ss_pred HHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh-----h
Q 000201 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 1237 (1866)
Q Consensus 1163 p~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~-----~ 1237 (1866)
|.+...+.++++.+|.+++.+++.+...+.+..+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987766545566788999999999999999999999999999999887763 3
Q ss_pred HhhHHHHHHHhc
Q 000201 1238 IDEIVPTLLHAL 1249 (1866)
Q Consensus 1238 ~~~ilp~Ll~~L 1249 (1866)
++.++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-16 Score=215.08 Aligned_cols=518 Identities=10% Similarity=0.083 Sum_probs=317.7
Q ss_pred ccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhc
Q 000201 290 GLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRY 361 (1866)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~ 361 (1866)
-.+..++.++|+++++|+...|++|++.|+++. .++ ....+...+. ..+.+..+|..| ...|...
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~---~~p--~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQ---DNP--DAWQKADQIL--QFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HST--TGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---hCc--hHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 344567889999999999999999999998764 112 2233333332 224455555443 3568765
Q ss_pred CCccCCCh-hhhhhhcCCC---------CHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcch
Q 000201 362 GYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 430 (1866)
Q Consensus 362 ~~~~~~~~-~~ll~~l~~~---------~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 430 (1866)
+.+-+..+ ..+++.+.+. +..+|.+.+++++.+... ||+.|++.+..+++... . +...
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~-------~~~~ 153 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S-------SVNV 153 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------CHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------ChHH
Confidence 54444445 5666665542 478999999999998644 77777777777776531 1 1134
Q ss_pred hhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhh
Q 000201 431 RQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 510 (1866)
Q Consensus 431 R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~ 510 (1866)
+......|+.+++.+..-. .++....-+..+.+ .+. .+.+.+++.+...+.... .
T Consensus 154 ~~~~l~~L~~l~eev~~~~------------~~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~~-----~ 208 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFS------------AEQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQGS-----S 208 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSC------------TTTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHHHHHHHHHhc------------chhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhcC-----C
Confidence 5566666666654322100 00111111111111 111 124567777777766532 1
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-h-------hhHHHHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-D-------EAPTLVSRLLDQ 582 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~-------~~~~~l~~ll~~ 582 (1866)
..++..++.++.....+.+.....-..+++.+.+.+. .+++++..+++|+..++.... + ....++..++..
T Consensus 209 ~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~ 287 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQ 287 (1049)
T ss_dssp HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHH
Confidence 4588889888877665544211000123444442221 256899999999887775421 1 122222223332
Q ss_pred HH-----------------cCCChhHHHHHHHHHHHHHhhhC-----cchhh--hcchHHHHHHHHhCCCcHHHHHHHHH
Q 000201 583 LM-----------------KSDKYGERRGAAFGLAGVVKGFG-----ISSLK--KYGIAATLREGLADRNSAKRREGALL 638 (1866)
Q Consensus 583 L~-----------------~~~~~~~R~~A~~~L~~l~~~~g-----~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~ 638 (1866)
+. .+.+....+..+..+..+..... ..... -..+++.+......+ +...+..++.
T Consensus 288 l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~~le 366 (1049)
T 3m1i_C 288 IATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKTTLD 366 (1049)
T ss_dssp HHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred HHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 21 11223334444444444433211 00011 113456666655544 5566777777
Q ss_pred HHHHHHHHh------CcCchhcHHhHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHHhhcH
Q 000201 639 AFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQLSA 690 (1866)
Q Consensus 639 al~~L~~~l------~~~~~p~v~~llp~ll~~~~D~-------------------~---~~VR~~a~~al~~i~~~l~~ 690 (1866)
.+..+++.+ ...+.+++.++++.++..+.-+ + ...|+++.+++..++...+.
T Consensus 367 fw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~ 446 (1049)
T 3m1i_C 367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI 446 (1049)
T ss_dssp HHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH
Confidence 788888732 2456788889999988766311 1 14577888999998865554
Q ss_pred hhHHhHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhChhhHH-hhhcchhHHHhhhcc-----CCChHHHHHHHHHHHH
Q 000201 691 QGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 691 ~~v~~llp~L~~~L~--~~~w~~r~~a~~~L~~l~~~~~~~~~-~~l~~iv~~l~~~L~-----D~~~~VR~aA~~aL~~ 762 (1866)
..+..+++.+.+.+. +.+|+.|.+++.++|+++.+...... ..++.+++.+..+.. |+++.||..+++++++
T Consensus 447 ~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr 526 (1049)
T 3m1i_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ 526 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 445777777777775 46899999999999999988765543 347888888777543 5678888889999999
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
+++++.+.. ..+..+++.+..++.+.++.++..|+.++.++++
T Consensus 527 y~~~~~~~~-------------------------------------~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 527 YPRFLKAHW-------------------------------------NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp CHHHHHHCH-------------------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHH-------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 987654210 1233345555666677778889999999999987
Q ss_pred hcCC------CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 843 LVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 843 ~l~~------~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
.... +.++.||++.++..+...+......-+.....+++.++...++
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 5421 1222499999999999999887777778889999999998873
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-14 Score=184.50 Aligned_cols=677 Identities=12% Similarity=0.088 Sum_probs=413.6
Q ss_pred HHHHhhhcCCccCCChhhhhhhcCC-CCHHHHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhhcCCCCCCCCCCcchh
Q 000201 354 AEDIWDRYGYDFGTDYSGLFKALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLF-SLYIRDIGLGGDNVDAGWLGR 431 (1866)
Q Consensus 354 ~~~~w~~~~~~~~~~~~~ll~~l~~-~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~R 431 (1866)
|..+|.+.+ +..+++.+.+ .|..+.-+|.+++..+++.+++.....+..+- .-+..-... . ..+.-
T Consensus 42 a~~i~~~~~------~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~-----~~~~~ 109 (810)
T 3now_A 42 AELLYKDHC------IAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQ-K-----HENCV 109 (810)
T ss_dssp HHHHHHTTH------HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHC-C-----STTHH
T ss_pred hHHHHhCch------HHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcC-C-----CHHHH
Confidence 567898754 2334444555 78999999999999999877654433332221 001110000 0 11222
Q ss_pred hHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhh
Q 000201 432 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
.++...+..+...+...+. +.-.-|++.+... + +.....++..|-..+.++. . ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----------~-~~~~~~~~~~l~~~~~~~~-~---~~ 164 (810)
T 3now_A 110 STAQFCLQTILNALSGLKN---------KPDSKPDKELCTR-----------N-NREIDTLLTCLVYSITDRT-I---SG 164 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCS---------STTCCCCHHHHHH-----------T-HHHHHHHHHHHHHHHTCTT-S---CH
T ss_pred HHHHHHHHHHHHHHhcccc---------ccccCCcHHHHhh-----------h-hhHHHHHHHHHHHHhhccc-c---Ch
Confidence 3333334333222111000 0001122222110 0 1122334444444444422 1 14
Q ss_pred hHHHHHHHHHHHHhhhhccCCcc-hH--HHHHHHHHhcCC-C----------cHHHHHHHHhhhhhhhHhhh-----hhh
Q 000201 512 LVREGVVIFTGALAKHLAKDDPK-VH--AVVDKLLDVLNT-P----------SEAVQRAVSSCLSPLMQSMQ-----DEA 572 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~-~~--~l~~~l~~~l~~-~----------~~~v~~~~~~~l~~lv~~~~-----~~~ 572 (1866)
..|+.+++++.+-..+-+...+. +. .=+.++++.-.. + .++.|..++-|+..+...+. +.+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 67888887776666443322111 11 112233333222 0 23678888888887765544 456
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
.+.+..++...+...+.+....|++++..++.+.. ...+...+.++.+...+.++ +...++.|+.+++.++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa~~~~- 322 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACECLIAASSKKD- 322 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCcH-
Confidence 77778888777777777888899999999998642 22232447889999888875 46777889999988776522
Q ss_pred CchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---------HhhHHhHHHHHHhhcCCC--ChhhHHHHHH
Q 000201 650 LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDK--AWRTKQSSVQ 717 (1866)
Q Consensus 650 ~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~---------~~~v~~llp~L~~~L~~~--~w~~r~~a~~ 717 (1866)
...++ ..-+|.|...++..+..+|.-|..+|..+..... ...+..++|.+...|.++ +..+|..|++
T Consensus 323 -~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 323 -KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp -HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred -HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 23333 2334889999998889999999999988874321 123578899999999887 8999999999
Q ss_pred HHHHHHhhChhhHHh-hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchh-HHhHHHHHHHhhCC--C--C----
Q 000201 718 LLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLTD--P--N---- 787 (1866)
Q Consensus 718 ~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~L~~~l~d--~--~---- 787 (1866)
.|.+++........- .-...+|.|+++++..++.++..|.++|+.++.....+. +.++ ..+-+.... | .
T Consensus 402 aLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l-~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM-IELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC-GGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH-HHHHHHhhccCcccccccc
Confidence 999998764332211 124789999999998899999999999999987432110 0000 000111100 1 0
Q ss_pred -hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHh
Q 000201 788 -DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVL 865 (1866)
Q Consensus 788 -~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l 865 (1866)
+.++.-.+.++ -...+|.|...+.+.++++|..|+.++++++. +....... -...+|.|..++
T Consensus 481 ~~~v~~r~~~Vv------------eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL 545 (810)
T 3now_A 481 VDFINKRITVLA------------NEGITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMA 545 (810)
T ss_dssp HHHHHHHHHHHH------------HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHH
Confidence 01110011221 12478999999999999999999999999985 21111111 124788889999
Q ss_pred cCCCHhHHHHHHHHHHHHHhhcCCCC------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh---hHH-HHHH
Q 000201 866 VDPIPEVRSVAARAIGSLIRGMGEEN------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYF-EHIL 935 (1866)
Q Consensus 866 ~d~~~~vR~~a~~aL~~l~~~~g~~~------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~---~~l-~~ll 935 (1866)
.++.+.+|..|+.+|+.++....++. ..+.+|.|.+.|.++.+...+..++.+|+.++..-.. ... ...+
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 99999999999999999987544321 1347899999887654544456788888887753211 111 2467
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhch
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1013 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~l 1013 (1866)
|.+...+.+.++.+|+.++.+++.++..-. ....+. ...++.++..+..++..+|..|..++..+.......
T Consensus 626 ~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~----- 699 (810)
T 3now_A 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKC----- 699 (810)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHH-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHH-----
Confidence 888898889999999999999999986432 223333 247788888888888888888877777655421000
Q ss_pred HHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCC
Q 000201 1014 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1093 (1866)
Q Consensus 1014 lp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~ 1093 (1866)
. +.+++. ...++.|...+.+.
T Consensus 700 ----------------------~-------------------------------~~ii~~------~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 700 ----------------------C-------------------------------EKILAI------ASWLDILHTLIANP 720 (810)
T ss_dssp ----------------------H-------------------------------HHHHTS------TTHHHHHHHHHTCS
T ss_pred ----------------------H-------------------------------HHHHHH------cCCHHHHHHHHCCC
Confidence 0 000100 01233344445567
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhH-HHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS---SSERRQVAGRALGELVR 1151 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l-~~l~~~L~~~l~~~---~~~~R~~A~~~L~~lv~ 1151 (1866)
+..+|+.|+.++..++.+.+.....+. ...++.|+..+..+ +.+++..|..+|..+.+
T Consensus 721 d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 778888888888888875543221111 13455566555433 57788888888877764
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-14 Score=182.84 Aligned_cols=661 Identities=12% Similarity=0.098 Sum_probs=430.5
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHHHHHHhh-hCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 574 TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKG-FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 574 ~~l~~ll~~L~~-~~~~~~R~~A~~~L~~l~~~-~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
.-+.+||+-++. +.+.+.|+.|++.|.-+++. -|.+.+-..+-+..+.+.++..+++...-+|+..+..+|.+-....
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 346677777773 44567899999999988874 3445443456677888888876777888888888888887653211
Q ss_pred hhcHHh-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH------------------hhHHhHHHHHHhhcCCCC--hh
Q 000201 652 EPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDKA--WR 710 (1866)
Q Consensus 652 ~p~v~~-llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~------------------~~v~~llp~L~~~L~~~~--w~ 710 (1866)
...+.. -.|.+...+.-++..+-.++..++..+...+++ ..++.++..|+..+.+.. -.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 86 KGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChh
Confidence 222222 256677777778888888898888888876542 124667888888888764 67
Q ss_pred hHHHHHHHHHHHHhhC----hhhHHhhhcchhHHHhhhcc---C--------CChHHHHHHHHHHHHHHhhccc----hh
Q 000201 711 TKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---D--------THPKVQSAGQTALQQVGSVIKN----PE 771 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~----~~~~~~~l~~iv~~l~~~L~---D--------~~~~VR~aA~~aL~~l~~~i~~----~~ 771 (1866)
.|..++.+|..-+... +..+.. ..-+..++++.. + -.+..|..|.-||.++-+.... ..
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 8999998887655322 111111 111222333222 2 1468999999999999987763 23
Q ss_pred HHhHHHHHHH-hhCCCC--hhHH--HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000201 772 IASLVPTLLM-GLTDPN--DHTK--YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846 (1866)
Q Consensus 772 i~~lv~~L~~-~l~d~~--~~vr--~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~ 846 (1866)
+.+.+..+++ .+..++ .+++ .++..+....+......-.....+|.+...+.+.+..++..|+.++++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--- 320 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--- 320 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---
Confidence 3444444433 333333 2333 2333333211100000001236789999999999999999999999998762
Q ss_pred Ccchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC----C-----ChhhHHHHHHHhcccCC-CHHHHHHH
Q 000201 847 PKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----E-----NFPDLVSWLLDALKSDN-SNVERSGA 915 (1866)
Q Consensus 847 ~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~----~-----~~~~l~~~L~~~L~~~~-~~~~R~~a 915 (1866)
. .... ..+.-+|.|..++.+.+..+|..|..+|..+....+. . ....+++.+...|.++. +..+|..+
T Consensus 321 ~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~A 399 (810)
T 3now_A 321 K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399 (810)
T ss_dssp H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHH
T ss_pred c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 1111 1222248889999888899999999999998754331 1 13467788888777651 34589999
Q ss_pred HHHHHHHHHHhChh--HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh-----------h------------
Q 000201 916 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-----------F------------ 968 (1866)
Q Consensus 916 ~~~L~~l~~~~g~~--~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~-----------f------------ 968 (1866)
+++|+.+....... .. ...+|.+++.+.++++.+..+++.+++.++...... |
T Consensus 400 veaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 400 ADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 99998876533221 11 468899999999999999999999999999743100 0
Q ss_pred -HhHH---------HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc--chhc-hHHhHhcccCCCchHHHHHHHHH
Q 000201 969 -QNYL---------QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--SLPL-LLPAVEDGIFNDNWRIRQSSVEL 1035 (1866)
Q Consensus 969 -~~~l---------~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~--~i~~-llp~l~~~l~d~~w~vR~~s~~l 1035 (1866)
..+. ...+|.+...+..+++++|+.|.+++..+...-... .++. .+|.+...+.+.+...|..+...
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~A 559 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQA 559 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHH
Confidence 0011 247899999999999999999999999887431110 1111 46667776767777888889988
Q ss_pred HHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcChh
Q 000201 1036 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1036 l~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~-D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
++.+..... .+ ..++.......++.|+..+. |.+...+..|+.+|..++...+.
T Consensus 560 L~nL~~~~~------------------p~-------~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 560 LARIGITIN------------------PE-------VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp HHHHHHHSC------------------HH-------HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhcCCC------------------hh-------hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 888753210 00 00000001124556655544 33445566789999999987554
Q ss_pred hHHHhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--ccc--cchHHHHhcccCCCCccchhhHHHHHHHHHH
Q 000201 1115 TLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVL--PSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1189 (1866)
Q Consensus 1115 ~l~~~l~-~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l--~~llp~L~~~L~d~~~~vr~~a~~~L~~li~ 1189 (1866)
.-..++. ..++.|...+.+.++.+|..|+.+++.++..-.. .+. ...++.|...+.+++..+|..++++|+.+..
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 3323332 3466777777888999999999999998753211 112 3577888888888889999999999998865
Q ss_pred hhchhhHHhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh-----HhhHHHHHHHhccCCCc-----hhH
Q 000201 1190 SAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALEDDQT-----SDT 1257 (1866)
Q Consensus 1190 ~~~~~~l~~~l--~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L~~~~~-----~~~ 1257 (1866)
. .+......+ ...++.+...+.+.+.+++..|+.++..+... +.+. -...+|.|.+.++..+. .+.
T Consensus 695 ~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~ 772 (810)
T 3now_A 695 V-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREV 772 (810)
T ss_dssp H-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHH
T ss_pred C-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHH
Confidence 3 233333333 36888899999999999999999999988652 2221 13457788877765421 134
Q ss_pred HHHHHHHHhh
Q 000201 1258 ALDGLKQILS 1267 (1866)
Q Consensus 1258 al~~l~~il~ 1267 (1866)
++++|..++.
T Consensus 773 Al~aL~~ll~ 782 (810)
T 3now_A 773 ATQCLAAAER 782 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666553
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-14 Score=199.03 Aligned_cols=679 Identities=10% Similarity=0.026 Sum_probs=399.3
Q ss_pred CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc----hhcHH-hHHHH
Q 000201 587 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF----EPYVI-QMLPL 661 (1866)
Q Consensus 587 ~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~----~p~v~-~llp~ 661 (1866)
.+...|+.|-..|..+-+. + +....+...+....+...|..|...+......-...+ ..++. .+++.
T Consensus 19 ~d~~~r~~A~~~L~~~~~~--p------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~ 90 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS--P------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILES 90 (971)
T ss_dssp STTTC----CHHHHHTTTS--T------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC--H------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHH
Confidence 3445677777777654332 1 2233444455555677888888888887776532222 22232 35555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC------ChhhHHHHHHHHHHHHhhC---------
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCA--------- 726 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~------~w~~r~~a~~~L~~l~~~~--------- 726 (1866)
+.....+ ...||.....++..|+....+ .++.+++.+...+.++ +...+..++.+|..+.+-.
T Consensus 91 l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r 168 (971)
T 2x1g_F 91 IVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKR 168 (971)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHH
Confidence 5554433 489999999999999988665 7788999999888654 4567888888888777521
Q ss_pred ---hhhHHhhhcchhHHHhhhccCCC-h-------HHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhh----------
Q 000201 727 ---PQQLSQCLPKIVPKLTEVLTDTH-P-------KVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGL---------- 783 (1866)
Q Consensus 727 ---~~~~~~~l~~iv~~l~~~L~D~~-~-------~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l---------- 783 (1866)
.+.+..+++.+++.+..++++.. + .++..+.+|+..+.. ++.......+++.+.. +
T Consensus 169 ~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~ 247 (971)
T 2x1g_F 169 VVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIH 247 (971)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhcccccc
Confidence 12345566777777777665322 2 789999999998887 4543333567776665 4
Q ss_pred ------CCCChhHH-HHHHHHHhccccc--cCCcchhhhHHHHHHH-------hhcCCCH---HHHHHHHHHHHHHhhhc
Q 000201 784 ------TDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHR-------GLRERSA---ETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 784 ------~d~~~~vr-~al~~L~~~~~~~--~~~~~~l~~l~p~L~~-------~l~d~~~---~vr~~a~~~l~~l~~~l 844 (1866)
.++++..+ .+++.+....... ....+....++|.+.. ...+.+. +.....++++..+++..
T Consensus 248 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~ 327 (971)
T 2x1g_F 248 AGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH 327 (971)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 01223444 4555554421110 1111234444554443 2233342 66667788877776421
Q ss_pred CC---------CcchhhhHhhhhHHHHHHhcC-----CCHhHHHHHHHHHHHHHhhc-C-----C---------CChhhH
Q 000201 845 TE---------PKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGM-G-----E---------ENFPDL 895 (1866)
Q Consensus 845 ~~---------~~~l~~~~~~ll~~L~~~l~d-----~~~~vR~~a~~aL~~l~~~~-g-----~---------~~~~~l 895 (1866)
.. .....+++..+++.+...... .+..+...++..+..+++.. + . .++..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 407 (971)
T 2x1g_F 328 STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL 407 (971)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 00 001224566677777776643 36788888999888887632 1 1 134556
Q ss_pred HHHHHHhcccCCC--------------HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-----CChhHHhHHHHH
Q 000201 896 VSWLLDALKSDNS--------------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTL 956 (1866)
Q Consensus 896 ~~~L~~~L~~~~~--------------~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-----~~~~vR~~al~~ 956 (1866)
++.++..+.-+++ ..-|..+...+..++..+|...++.+++.+.+.+.+ .+|..|++++.+
T Consensus 408 l~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 408 TRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYS 487 (971)
T ss_dssp HHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 6666666532111 124566777788888888867777777777666554 689999999999
Q ss_pred HHHhhhhhchhhHhHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHH
Q 000201 957 FKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1035 (1866)
Q Consensus 957 l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~l 1035 (1866)
++.++..+.....++++.+++.+..... |.++.||..++.++..+...+...
T Consensus 488 l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--------------------------- 540 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN--------------------------- 540 (971)
T ss_dssp HHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----------------------------
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 9999998876666788888884433332 457778887777666554322110
Q ss_pred HHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhh
Q 000201 1036 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1115 (1866)
Q Consensus 1036 l~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~ 1115 (1866)
.++...+++.++..+ | ..|+..|+.++..++...+..
T Consensus 541 ----------------------------------------~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 541 ----------------------------------------PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp ------------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 011223444444444 2 467889999999999888888
Q ss_pred HHHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhcc-c---cccc----hHHHHhcccCCC--Cccchhh---H
Q 000201 1116 LKEIMPVLMNTLISSLAS--SSSERRQVAGRALGELVRKLGE-R---VLPS----IIPILSRGLKDP--SASRRQG---V 1180 (1866)
Q Consensus 1116 l~~~l~~l~~~L~~~l~~--~~~~~R~~A~~~L~~lv~~~~~-~---~l~~----llp~L~~~L~d~--~~~vr~~---a 1180 (1866)
+.++++.+++.+...+.. -+...+..+..+++.++...++ . .+.. ++..+...+... +.+.+.. .
T Consensus 578 l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 657 (971)
T 2x1g_F 578 LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFR 657 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 899999999999888876 3578899999999999987652 1 2223 333333333332 2222333 3
Q ss_pred HHHHHHHHHhhc------------hhhHHhhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHHhchh---hHhhHHH
Q 000201 1181 CIGLSEVMASAG------------KSQLLSFMDELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVP 1243 (1866)
Q Consensus 1181 ~~~L~~li~~~~------------~~~l~~~l~~ll~~l~~~L~d--~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp 1243 (1866)
...|+.++...+ +..+.++.+.+++.+...+.+ .+.++.+.++.+++.+...+|.. .+..+++
T Consensus 658 l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~ 737 (971)
T 2x1g_F 658 LNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCL 737 (971)
T ss_dssp HHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHH
T ss_pred HHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 334444444332 123456778888888877653 37799999999999988877654 2333444
Q ss_pred HHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCC------chhhHhhHHHHHH
Q 000201 1244 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG------LNFHLGTILPALL 1317 (1866)
Q Consensus 1244 ~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~------l~~~l~~il~~L~ 1317 (1866)
.++..+..... ..++..+..++.. +|.. +...+..+...++
T Consensus 738 ~l~~~~~~~~~-~~~l~l~~~~i~~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 738 FIVASFQTRCC-APTLEISKTAIVM--------------------------------FFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp HHHHHCC--CC-HHHHHHHHHHHTT--------------------------------CCC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHH--------------------------------hCCCcchHHHHHHHHHHHHHHHH
Confidence 44444443222 2233333333321 1211 2223333333334
Q ss_pred HhcCC-------CCHHHHHHHHHHHhHhhhccc-----hhc-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh
Q 000201 1318 SAMGD-------DDMDVQSLAKEAAETVTLVID-----EEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379 (1866)
Q Consensus 1318 ~~l~~-------~~~~vr~~a~~~l~~l~~~~~-----~~~-~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~ 1379 (1866)
..+.. .++++++.....+..++.... .+. +..+++..+..+..++.....+++.++..++..
T Consensus 785 ~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 785 KLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 33332 256788888777777776543 244 788888888888777777777888888887654
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-14 Score=190.96 Aligned_cols=765 Identities=11% Similarity=0.089 Sum_probs=419.8
Q ss_pred HHHhccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHH
Q 000201 286 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDI 357 (1866)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 357 (1866)
++.+.++-..+.+++..+++|+...|++|.+.|++.. .++ ....+...+. ..+.+..++-.| ...
T Consensus 8 ~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q---~sp--~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~~ 80 (1023)
T 4hat_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQ---DNP--DAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1023)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HCT--TGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---cCc--cHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhh
Confidence 3444456677888999999999999999999998765 122 1222222222 223344444332 367
Q ss_pred hhhcCCccCCCh-hhhhhhcC----CC-----CHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 358 WDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 358 w~~~~~~~~~~~-~~ll~~l~----~~-----~~~vr~~aa~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
|...+.+-...+ ..+++.+. ++ ...+|.+.+++++.+. ..||+.|++.+..+.+... .
T Consensus 81 W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~------- 149 (1023)
T 4hat_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1023)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----T-------
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----C-------
Confidence 976554444444 45554442 22 4678888999999986 4588888888888876531 1
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCC
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 506 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~ 506 (1866)
+..........|+.+.+.+. .| .-.+-...-|..+.++.. .+.+.+++.+...|+....
T Consensus 150 ~~~~~~~~L~iL~~L~EEV~--------~~----~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~~~- 208 (1023)
T 4hat_C 150 SVNVCENNMIVLKLLSEEVF--------DF----SAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQGAS- 208 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--------TS----CTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCSS-
T ss_pred CHHHHHHHHHHHHHHHHHHH--------Hh----hhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCCC-
Confidence 11223334444444433211 00 000111111222222221 1245677777777765221
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHHH-HhcCCCcHHHHHHHHhhhhhhhHhh--hh------hhHHHHH
Q 000201 507 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD------EAPTLVS 577 (1866)
Q Consensus 507 ~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~-~~l~~~~~~v~~~~~~~l~~lv~~~--~~------~~~~~l~ 577 (1866)
..+...+..++++....++.+.-.-..+++.++ ..|. +++++..+++|+..++... ++ ....++.
T Consensus 209 ----~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~ 282 (1023)
T 4hat_C 209 ----SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1023)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence 346677888887776655432100023556666 5554 4579999999998887521 11 1222333
Q ss_pred HHHHHH---------------HcC--CChhHHHHHHHHHHHHHhhhCcchhh---h-cchHH----HHHHHHhCCCcHHH
Q 000201 578 RLLDQL---------------MKS--DKYGERRGAAFGLAGVVKGFGISSLK---K-YGIAA----TLREGLADRNSAKR 632 (1866)
Q Consensus 578 ~ll~~L---------------~~~--~~~~~R~~A~~~L~~l~~~~g~~~l~---~-~~ii~----~L~~~i~~~~~~~~ 632 (1866)
..+..+ ... ++....++-+..+..+...... .+. . ..++. .|..... .++...
T Consensus 283 ~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~-li~~~~~~~~~l~~~l~~Ll~~~~-~~d~ei 360 (1023)
T 4hat_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRA-LLESDESLRELLLNAHQYLIQLSK-IEEREL 360 (1023)
T ss_dssp HHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGG-GGTSCGGGHHHHHHHHHHHHHHTT-SSCHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHHHhhC-CCcHHH
Confidence 333222 111 1222222333333333332211 111 0 12222 3333222 234444
Q ss_pred HHHHHHHHHHHHHHhC------cCchhcHHhHHHHHHHHcCCCC--------------------H--HHHHHHHHHHHHH
Q 000201 633 REGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV--------------------V--AVREAAECAARAM 684 (1866)
Q Consensus 633 r~~al~al~~L~~~l~------~~~~p~v~~llp~ll~~~~D~~--------------------~--~VR~~a~~al~~i 684 (1866)
-..++.-+..+++.+- ..+.|++.++++.++..+.-|. + ..-+...+++..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4455666666776543 2478888899999988765432 0 1111223677666
Q ss_pred HHhhcHhhHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChh-hHHhhhcchhHHHhhhcc-----CCChHHHHHH
Q 000201 685 MSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSAG 756 (1866)
Q Consensus 685 ~~~l~~~~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~~L~-----D~~~~VR~aA 756 (1866)
....+.+.++.+++.+.+.+.+ .+|+.+.+++.++|+++++... .....++.++|.++.++. |+++.||..+
T Consensus 441 ~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 441 THLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHH
Confidence 6655555557788888777764 6899999999999999998654 467889999999999886 5667889999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQI 836 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~ 836 (1866)
++++|++++++... ...+..++..+..++.+.++.+...||.+
T Consensus 521 ~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 521 MYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1023)
T ss_dssp HHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999999877421 01223344555666666677888888889
Q ss_pred HHHHhhhcCC------CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHhcccCCCH
Q 000201 837 VGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSN 909 (1866)
Q Consensus 837 l~~l~~~l~~------~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l~~~L~~~L~~~~~~ 909 (1866)
+.++|+.... +....||++.++..+.....+-.+.-+..+..+++.++...+... .+.++..|+..+..
T Consensus 564 l~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~---- 639 (1023)
T 4hat_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM---- 639 (1023)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH----
T ss_pred HHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH----
Confidence 8888875421 123467999999999998887788888999999999999887542 23333333322110
Q ss_pred HHHHHHHHHHHHHHHHhChhHHH--HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC
Q 000201 910 VERSGAAQGLSEVLAALGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 987 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g~~~l~--~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~ 987 (1866)
..+.+..-. .-+...+. +-+..+ -..+.++..++..+|..|.|++..+.+.++....-..
T Consensus 640 -----~~~~l~~~~-~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 640 -----AWDTIVEQS-TANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp -----HHHHHHHHH-HHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHH-hcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111000 01111110 000011 1234577788889999999999999888876532111
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHH
Q 000201 988 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067 (1866)
Q Consensus 988 ~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~ 1067 (1866)
..+ ...+..-+....+. | ..+.+ -.+|.+.++++...+.+..+ .+.+.
T Consensus 702 ~~i--------~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~~-----------------~~~~~ 749 (1023)
T 4hat_C 702 SMI--------SAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKARN-----------------LDDVV 749 (1023)
T ss_dssp HHH--------HHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCSC-----------------HHHHH
T ss_pred HHH--------HHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCCC-----------------HHHHH
Confidence 111 11111111110000 0 00000 11667777777776644210 11111
Q ss_pred HHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhc---CCCHHHHHHHH
Q 000201 1068 RAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAG 1143 (1866)
Q Consensus 1068 ~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~---~~~~~~R~~A~ 1143 (1866)
..++. ...+.++...-... ...++.|=.....++..+.......+..++..++..-+..+. +..++.|..-.
T Consensus 750 ~~~~~----~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff 825 (1023)
T 4hat_C 750 KVLVE----PLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFY 825 (1023)
T ss_dssp HHTHH----HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHH
T ss_pred HHhHH----HHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 11111 01111111111110 112234444444444444443333344444444444444554 36789999999
Q ss_pred HHHHHHHHHhccc-------cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhc
Q 000201 1144 RALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1192 (1866)
Q Consensus 1144 ~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~ 1192 (1866)
+.+..+....... ..+.++..+.-+++++.+++-..++..+.+++.++.
T Consensus 826 ~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 826 KLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999988876543 234455556667788887777777777777765543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-12 Score=183.97 Aligned_cols=698 Identities=11% Similarity=0.077 Sum_probs=402.8
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHh-cCCCHhHHHHHHHHHHHHHhh---
Q 000201 811 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG--- 886 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l-~d~~~~vR~~a~~aL~~l~~~--- 886 (1866)
+..+...+.....+.+++.|+.|.+.+..+-.. + + ..+.+..++ .+.++.+|..|+..|...+..
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 333444444434556788999999988887651 1 1 122223333 256789999999999988864
Q ss_pred -cCCCChhhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-----CChhHHhHHHHHHH
Q 000201 887 -MGEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFK 958 (1866)
Q Consensus 887 -~g~~~~~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-----~~~~vR~~al~~l~ 958 (1866)
+.++....+-..+++.+.+. .+..+|...+.+++.++.....+.|+++++.+.+.+++ +++..++.++.+|.
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 23333344444555544432 24568999999999999887667788999999998865 36667888999998
Q ss_pred Hhhhhh-c------------hhhHhHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHHHhhcccch--hchHHhHhccc
Q 000201 959 YLPRSL-G------------VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGI 1021 (1866)
Q Consensus 959 ~L~~~~-g------------~~f~~~l~~il~~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~~i--~~llp~l~~~l 1021 (1866)
.++... . ..+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 888532 1 12334566666666665544322 255555555544333 111111 22333333322
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHH
Q 000201 1022 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAA 1101 (1866)
Q Consensus 1022 ~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A 1101 (1866)
.+|.+|..++
T Consensus 251 --~~~~~~~~a~-------------------------------------------------------------------- 260 (963)
T 2x19_B 251 --QDSELFDSSV-------------------------------------------------------------------- 260 (963)
T ss_dssp --TSTTTHHHHH--------------------------------------------------------------------
T ss_pred --CCchHHHHHH--------------------------------------------------------------------
Confidence 1344444444
Q ss_pred HHHHHHHhhcC-hhhHHHhHHHHHHHHH-------HhhcCCCHHHHHHHHHHHHHHHHHhc---------cccccchHHH
Q 000201 1102 LHVWKTIVANT-PKTLKEIMPVLMNTLI-------SSLASSSSERRQVAGRALGELVRKLG---------ERVLPSIIPI 1164 (1866)
Q Consensus 1102 ~~~l~~l~~~~-p~~l~~~l~~l~~~L~-------~~l~~~~~~~R~~A~~~L~~lv~~~~---------~~~l~~llp~ 1164 (1866)
+++..++... +....+++..+++.++ ..+...+.+.....++.+..+..... ...+..+++.
T Consensus 261 -~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 339 (963)
T 2x19_B 261 -EAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNM 339 (963)
T ss_dssp -HHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -HHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHH
Confidence 4444444321 1111111111111111 11122233333333333333332211 1123344454
Q ss_pred HhcccCC-----CCccchhhHHHHHHHHHHhh----------chhhHHhhHhhHHHHHHHhhcCCcH-------------
Q 000201 1165 LSRGLKD-----PSASRRQGVCIGLSEVMASA----------GKSQLLSFMDELIPTIRTALCDSIL------------- 1216 (1866)
Q Consensus 1165 L~~~L~d-----~~~~vr~~a~~~L~~li~~~----------~~~~l~~~l~~ll~~l~~~L~d~~~------------- 1216 (1866)
+...... .+..+...++..+..+.... ....+.+++..+++.+...+.-++.
T Consensus 340 ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~ 419 (963)
T 2x19_B 340 IMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQ 419 (963)
T ss_dssp HHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHH
Confidence 5444443 24555666665555544421 1123456777778777665542211
Q ss_pred --HHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCC--ccchhHH
Q 000201 1217 --EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP--LSAFNAH 1292 (1866)
Q Consensus 1217 --~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~--~~~~~~~ 1292 (1866)
+.|..+..++..++...+...+..+++.+-..+..-. .... .......
T Consensus 420 ~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------------------~~~~w~~~eaal~ 471 (963)
T 2x19_B 420 FRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE----------------------------EPYSWQHTEALLY 471 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC----------------------------CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC----------------------------CCCchHHHHHHHH
Confidence 1233444455555544443333333322222221000 0000 0011234
Q ss_pred HHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhccCCCchhHHHHHH
Q 000201 1293 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSA 1370 (1866)
Q Consensus 1293 al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~l~~~~~~vR~~a~ 1370 (1866)
+++++++.......++++.+++.+. .+.++++.+|..+..+++.+...+. .+.+..+++.++..+.+ +.++..|+
T Consensus 472 al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~ 548 (963)
T 2x19_B 472 GFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSV 548 (963)
T ss_dssp HHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHH
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 5666665544445567777777443 4455678899999999998876543 35688888989888865 88999999
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcCCcc----hhhhhHHHHHHHHhhhhhhh
Q 000201 1371 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKE----VQPSYIKVIRDAISTSRDKE 1444 (1866)
Q Consensus 1371 ~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~A~~aL~~l~~~~~~~----~l~~l~~~l~~~l~~~~~~~ 1444 (1866)
.++..+++..+..+.+|++.++..+..++.. .+...+..++++++.++...+.+ ++..++.++.+.+...
T Consensus 549 ~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~---- 624 (963)
T 2x19_B 549 STLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL---- 624 (963)
T ss_dssp HHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999988888999999999999998874 45788999999999999877622 2222332222222111
Q ss_pred hhhhcCCccccCCcCCCCCccccHHHHHHhhcc-CCHHHHH---HHHHHHHHHHhhcCh---------------------
Q 000201 1445 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELRE---QAALGLGELIEVTSE--------------------- 1499 (1866)
Q Consensus 1445 ~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~-~~~~~r~---~a~~~L~~l~~~~~~--------------------- 1499 (1866)
..+ .+++.+. ....+++.++...+.
T Consensus 625 ------------------------------~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (963)
T 2x19_B 625 ------------------------------AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGP 674 (963)
T ss_dssp ------------------------------HSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CC
T ss_pred ------------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCC
Confidence 001 1222222 445556666655421
Q ss_pred hhhhhhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000201 1500 QSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL 1577 (1866)
Q Consensus 1500 ~~l~~~v~~i~~~Li~~l~~~-~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L 1577 (1866)
..+.++...+++.+.+++... .+..+...++.++..++..+|..+.||+|++.+.++...... ... ....++.+
T Consensus 675 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~l 750 (963)
T 2x19_B 675 NPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQL 750 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH----HHHHHHHH
Confidence 124456667777776666432 246788999999999999999999999999999888776553 222 22333433
Q ss_pred Hh---ccC----ChhhHHHHHHHH----hc-c--CChhHHHHHHHHHHHHHHhcCcccc-HHH-HHHHHHHHHHhhcCCC
Q 000201 1578 SA---LST----RVDPLVGDLLSS----LQ-V--SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1578 ~~---~~~----~~~~~l~~L~~~----l~-~--~~~~vr~~~l~aL~~vi~~~~~~l~-~~~-~~~i~~~L~~~l~~~~ 1641 (1866)
+. .++ .+..++..++.. ++ + ..++++...+..+..++.+....+. .+. ...++..+...+.+.+
T Consensus 751 i~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 22 222 233333333332 22 2 3589999999999999988776542 344 7788888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 000201 1642 DHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1642 ~~vr~~aa~~l~~L~~~~~ 1660 (1866)
..+...+...+..+....+
T Consensus 831 ~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 831 APTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8888888888888876543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-15 Score=193.56 Aligned_cols=506 Identities=13% Similarity=0.147 Sum_probs=343.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH
Q 000201 577 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 577 ~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~ 656 (1866)
..+-..| ++.+...|+.+..-+..+. ..|.+. ....+.+.+.+.++ +...|..+..++..+++.-+ ....
T Consensus 16 ~~i~~~L-~~~~~~~k~~~~~kli~~~-~~G~d~---~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~ 85 (591)
T 2vgl_B 16 FELKAEL-NNEKKEKRKEAVKKVIAAM-TVGKDV---SSLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAI 85 (591)
T ss_dssp HHHHHHT-TSSCHHHHHHHHHHHHHHH-HTTCCC---GGGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHH-HCCCCh---HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHH
Confidence 3333333 4445556666555544322 234322 12345555666654 56777777777777776422 2334
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
.+++.+.+.++|+++.+|..|..++..+. .+.-...++|.+.+.+.|+++.+|+.|+.+++.+....|+.+.. ..
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~ 160 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QG 160 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--cc
Confidence 55677888899999999998877776653 45556888999999999999999999999999999977765433 36
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
+++.+..+++|+++.|+.+|+.+|..++..-.+. .....++.+++.+.+.++..+ ..++.+.... ..+....
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~ 237 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKDDREA 237 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHH
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHH
Confidence 8899999999999999999999999998754322 123456666666666665554 3455443321 1223455
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc-CCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l-~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
..+++.+...+++.++.++..|+.++..+...+ .++..+....+.+.+.+..++ ++++++|..+..+++.++...+ +
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~ 315 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-E 315 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-S
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-H
Confidence 678899999999999999999999999987543 223344445566777777655 5789999999999999998644 3
Q ss_pred ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHh
Q 000201 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 970 (1866)
Q Consensus 891 ~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~ 970 (1866)
.+...+..++ .+.++. ..+|..++..+..++. .+..+.+++.+...+.+.++.+|..++..++.++..++.
T Consensus 316 ~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~~---~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~---- 386 (591)
T 2vgl_B 316 ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLAS---QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ---- 386 (591)
T ss_dssp TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTCC---SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHCC---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----
Confidence 2322222221 222333 6688888887766542 334677888899999899999999999999999987654
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccC-CCchHHHHHHHHHHHHHHHHhcCCccc
Q 000201 971 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDNWRIRQSSVELLGDLLFKVAGTSGK 1049 (1866)
Q Consensus 971 ~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~-d~~w~vR~~s~~ll~~ll~~~~~~~~~ 1049 (1866)
....+++.++..+.+..+.++..+..++..++..++.. ....++.+.+.+. .....+|..++..+|+.....
T Consensus 387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~------ 459 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI------ 459 (591)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC------
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc------
Confidence 44556777888888889999999988888888776543 2334555555554 345668888888888742110
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1050 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1050 ~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
. . -.+++..++....+.+..||..++.++..+....|....+.+..++..
T Consensus 460 --------~---~----------------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~--- 509 (591)
T 2vgl_B 460 --------D---N----------------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSL--- 509 (591)
T ss_dssp --------T---T----------------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHH---
T ss_pred --------c---C----------------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---
Confidence 0 0 013444444455677889999999999999887775332333333332
Q ss_pred hhc-CCCHHHHHHHHHHHHH
Q 000201 1130 SLA-SSSSERRQVAGRALGE 1148 (1866)
Q Consensus 1130 ~l~-~~~~~~R~~A~~~L~~ 1148 (1866)
+.. +.+.++|.-|...+.-
T Consensus 510 ~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 510 ATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHTTCCCHHHHHHHHHHHTT
T ss_pred hhhcCCChHHHHHHHHHHHH
Confidence 223 4678999988876543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-15 Score=191.82 Aligned_cols=500 Identities=15% Similarity=0.148 Sum_probs=343.3
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcc-hHHHH
Q 000201 461 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVV 539 (1866)
Q Consensus 461 ~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~-~~~l~ 539 (1866)
.+.+++...|..++.-.... ...|.+....++.+++ ++++++ ..+|..+...+..++.. ++. ..-++
T Consensus 21 ~L~~~~~~~k~~~~~kli~~-~~~G~d~~~~~~~vi~-l~~s~~------~~~Krl~yl~l~~~~~~----~~e~~~l~~ 88 (591)
T 2vgl_B 21 ELNNEKKEKRKEAVKKVIAA-MTVGKDVSSLFPDVVN-CMQTDN------LELKKLVYLYLMNYAKS----QPDMAIMAV 88 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHH-HHTTCCCGGGHHHHHH-TTSSSC------HHHHHHHHHHHHHHHHH----SHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHH-HHCCCChHHHHHHHHH-HhCCCC------HHHHHHHHHHHHHHccc----CchHHHHHH
Confidence 45566766666554444432 3346665555555555 554322 45777776666665542 111 23456
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
+.+.+.|.++++.++..+..++..+.. .+.....++.+. .++.+.++.+|+.|+.++..+... +++.+...++++.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~-~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLR-KCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDS 164 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHH-HHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHH
Confidence 778888999999999988888766531 122334444444 455688899999999999999984 4555543467889
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcC-chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 698 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~-~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp 698 (1866)
+.+.+.+ .++.++..|+.+++.++..-+.. +-+.....++.++..+.+.++-.+-...+++..+.. ..+.....+++
T Consensus 165 l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~-~~~~~~~~~l~ 242 (591)
T 2vgl_B 165 LRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-KDDREAQSICE 242 (591)
T ss_dssp HHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-CSHHHHHHHHH
T ss_pred HHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 9998875 46789999999998888754432 233445566677777777777777666655544321 12234578999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhC---hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCA---PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~---~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
.+...+.+.++.++.+|+.++..+.... ++.+......+.+.+..++ ++++.||..|+.+|..++....+ .+...
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~ 320 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQE 320 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHH
Confidence 9999999999999999999999987532 3334444556677777655 47899999999999999875432 12222
Q ss_pred HHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
+..+.....|| .++| .+++.+..+. +......+++.+...+++.++++|..++..++.++... .+..
T Consensus 321 ~~~~~~~~~d~-~~Ir~~al~~L~~l~-----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~------~~~~ 388 (591)
T 2vgl_B 321 IKVFFVKYNDP-IYVKLEKLDIMIRLA-----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV------EQSA 388 (591)
T ss_dssp TTTTSCCTTSC-HHHHHHHHHHHHHTC-----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC------HHHH
T ss_pred HHhheeccCCh-HHHHHHHHHHHHHHC-----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC------hhHH
Confidence 22222223455 6777 6888776532 22345678899999999999999999999999998742 3445
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
+.+++.+.+++.+....++..+..+++.+....++. ....++.|.+.+.+...+..|..+++.+|+.+..... ..++
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~~ 465 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADEL 465 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHHH
Confidence 668888899999999999999999999998865543 4567788888887666677888888888887654432 2455
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh-ccC-CChHHHHHHHHHHH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGAGH 999 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~-l~d-~~~~VR~~a~~al~ 999 (1866)
+..+.+.+.+.++.+|..++.++..+....+....+ .+..+++. ..| .+.+||+.|...+.
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 555665666678999999999999998877654323 33334443 345 67899998876543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-13 Score=181.52 Aligned_cols=616 Identities=13% Similarity=0.116 Sum_probs=367.4
Q ss_pred hhHHHHHhhhcCC--ChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHHHHHhhhcCCccCCChhh
Q 000201 294 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSG 371 (1866)
Q Consensus 294 ~~~~~~l~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 371 (1866)
+++.+.++.+++| |+..|.+|.+.|+++. ..+ +-|.-
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q---~sp---------------------------~aw~~----------- 44 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLR---SSS---------------------------TGWKI----------- 44 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH---HST---------------------------THHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH---cCh---------------------------hHHHH-----------
Confidence 4566677777787 6889999999998764 000 12331
Q ss_pred hhhhcCC---CCHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000201 372 LFKALSH---SNYNVRLAAAEALATALDEYPDS-----IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 443 (1866)
Q Consensus 372 ll~~l~~---~~~~vr~~aa~~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~ 443 (1866)
++..|.+ .+..+|..|++.+-..+...|+. ...+...+++.... ... . .++..+|.-++.++..++.
T Consensus 45 ~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~-~~~-~---~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 45 CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE-LSF-L---DEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH-CCS-T---TSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH-hcC-C---CCcHHHHHHHHHHHHHHHH
Confidence 1111222 26788888888887766555443 33444555554432 111 0 1256788888888888877
Q ss_pred hcCCCChHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhc----------------------ccc----hhhhHHHH
Q 000201 444 VLRTKDLPVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHG----------------------RDN----VSLLFPIF 496 (1866)
Q Consensus 444 ~~~~~~~~~~~~fli~~~l-~d~~~~vr~~~~~a~~~~i~~~g----------------------~~~----~~~ll~~l 496 (1866)
..-++.|+.++..++...- ++.+ ......+.....+-+.-+ ... .+..+.++
T Consensus 120 ~~~p~~Wp~~i~~l~~~~~~~~~~-~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL 198 (980)
T 3ibv_A 120 QLYPSNWNDFFASLQGVIAASSQS-EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMM 198 (980)
T ss_dssp HHTTTTCTTHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HhCcccCchHHHHHHHHhcCCChh-HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHH
Confidence 7666677776666654211 1221 122222222221001000 001 23333444
Q ss_pred HHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh--hhHH
Q 000201 497 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPT 574 (1866)
Q Consensus 497 e~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~--~~~~ 574 (1866)
+.+.... .+.++..+..++++-....+...-.-..+++.+...+.+ ++++.++++|+..++....+ ...+
T Consensus 199 ~~~~~~~------~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~ 270 (980)
T 3ibv_A 199 LAYSNAK------NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLN 270 (980)
T ss_dssp HHHHHTT------CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHhccC------CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHH
Confidence 4443321 145777788877776655433210014677778888775 68999999999888765431 1122
Q ss_pred HHHH-----HHHHHHc-CCChhHHHHHHHHHHHHHhh-----hCcc--------h--hhhcchHHHHHHHHhCCCcHHHH
Q 000201 575 LVSR-----LLDQLMK-SDKYGERRGAAFGLAGVVKG-----FGIS--------S--LKKYGIAATLREGLADRNSAKRR 633 (1866)
Q Consensus 575 ~l~~-----ll~~L~~-~~~~~~R~~A~~~L~~l~~~-----~g~~--------~--l~~~~ii~~L~~~i~~~~~~~~r 633 (1866)
++.. .+..+.. .++.+.+++-+.-+..+... ..+. . -.-..+++.+.....++++ ..-
T Consensus 271 li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~d-eVs 349 (980)
T 3ibv_A 271 LLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYD-ETS 349 (980)
T ss_dssp HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSH-HHH
T ss_pred HHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCch-hHH
Confidence 2221 1222222 34555544333332222111 0110 0 0012577777777777554 333
Q ss_pred HHHHHHHHHHHHHh---------CcCchhcHHhHHHHHHHHcCCC------C----------HHHHHHHHHHHHHHHHhh
Q 000201 634 EGALLAFECLCEKL---------GRLFEPYVIQMLPLLLVAFSDQ------V----------VAVREAAECAARAMMSQL 688 (1866)
Q Consensus 634 ~~al~al~~L~~~l---------~~~~~p~v~~llp~ll~~~~D~------~----------~~VR~~a~~al~~i~~~l 688 (1866)
..+...+..+.+.. ...+.|++.++++.++..+.-+ + ...|+... .+..++..+
T Consensus 350 ~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l 428 (980)
T 3ibv_A 350 TAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSI 428 (980)
T ss_dssp HTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhc
Confidence 33444444444332 2235677888888888776521 1 14777777 666666666
Q ss_pred cHhhH-H----hHHHHHHhhcC---CCChhhHHHHHHHHHHHHhhChhhH------HhhhcchhHHHhhhcc-----CCC
Q 000201 689 SAQGV-K----LVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTH 749 (1866)
Q Consensus 689 ~~~~v-~----~llp~L~~~L~---~~~w~~r~~a~~~L~~l~~~~~~~~------~~~l~~iv~~l~~~L~-----D~~ 749 (1866)
.+..+ . .+.+.+.+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|
T Consensus 429 ~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h 508 (980)
T 3ibv_A 429 DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH 508 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC
Confidence 66554 4 44444445553 4579999999999999999976532 2467788888888766 899
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHH--hhcCCCH
Q 000201 750 PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSA 827 (1866)
Q Consensus 750 ~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~--~l~d~~~ 827 (1866)
|.||..+++.++++.+++... .+ .+..+++.+.. ++.+++.
T Consensus 509 p~V~~~~~~~l~rys~~~~~~--~~-----------------------------------~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFDYE--SA-----------------------------------AIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGGTC--CT-----------------------------------THHHHHHHHTSTTTTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcC--ch-----------------------------------hHHHHHHHHhccccccCCCh
Confidence 999999999999999988531 01 22233444444 6666777
Q ss_pred HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC---------------------CHhHHHHHHHHHHHHHhh
Q 000201 828 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---------------------IPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 828 ~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~---------------------~~~vR~~a~~aL~~l~~~ 886 (1866)
.+|..|+.++.++++... ..+.||.+.++..+..++.-. ..+-+.....++|.++..
T Consensus 552 ~V~~~a~~af~~f~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~ 629 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISS 629 (980)
T ss_dssp TTHHHHHHHHHHHHHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhC
Confidence 889999999999998653 467899999998888877621 012466789999999988
Q ss_pred cCC--C----ChhhHHHHHHHhcc----cCCCH-HHHH---HHHHHHHHHHHHhCh---------hHHHHHHHHHHHHhc
Q 000201 887 MGE--E----NFPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS 943 (1866)
Q Consensus 887 ~g~--~----~~~~l~~~L~~~L~----~~~~~-~~R~---~a~~~L~~l~~~~g~---------~~l~~ll~~l~~~l~ 943 (1866)
.+. + ++..+++.+++.+. ..... ..+. ..+.+++.+++++.. ..+.+.++.+...+.
T Consensus 630 ~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~ 709 (980)
T 3ibv_A 630 GNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILD 709 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHH
Confidence 763 1 45556655554432 21111 1111 344556888887632 245566666666655
Q ss_pred --cCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 944 --HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 944 --~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
..+..+|+.+..+|..+..++|.++.|+++.++..++...+- .+. ...+..+..++..|+.+
T Consensus 710 ~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~--~e~-~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 710 RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDM--NEL-VDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCT--TTH-HHHHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCH--HHH-HHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999965432 222 23556677777777665
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=183.66 Aligned_cols=345 Identities=13% Similarity=0.069 Sum_probs=254.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh-CcCchhcHH--hHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHh-
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKL-GRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 691 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l-~~~~~p~v~--~llp~ll~~~~D~-~~~VR~~a~~al~~i~~~l~~~- 691 (1866)
++.+.+.+.++ ++..|..|+.++..++... .......+. .++|.+...+.++ ++.+|..+.+++..++..-+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56666666654 5778999999998876532 222333343 5899999999988 8999999999999998633221
Q ss_pred -h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccC-CChHHHHHHHHHHHHHHhh
Q 000201 692 -G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 692 -~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~ 766 (1866)
. + ...+|.+++.|.++++.+|..|+.+|+.++...+......+ ..++|.++.++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 1 45899999999999999999999999999987654322211 3688999999985 7899999999999999964
Q ss_pred c-c---chhHHhHHHHHHHhhCCCChhHH-HHHHHHHhcccccc--CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 I-K---NPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i-~---~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
. . ...+..++|.|.+.+.+++..++ .++..+........ ...-....++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 1 12347899999999998887777 45555544221110 0000123578999999999999999999999999
Q ss_pred HhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---Ch-hhHHHHHHHhcccCCCHHHHHH
Q 000201 840 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 914 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~-~~l~~~L~~~L~~~~~~~~R~~ 914 (1866)
++.. ......... ..+++.+..++.++++.+|..|+.+|+.++....+. .+ ..++|.++..+.+. +..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHH
Confidence 9873 211111112 258899999999999999999999999998632111 11 35788888888764 4568999
Q ss_pred HHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc
Q 000201 915 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965 (1866)
Q Consensus 915 a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g 965 (1866)
++.+|+.++.....+.. ..++|.+++.+.++++.+|..++.++..+....+
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 99999999876444322 3578899999999999999999999999887544
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-12 Score=176.85 Aligned_cols=760 Identities=9% Similarity=0.076 Sum_probs=402.8
Q ss_pred HHHhccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHH
Q 000201 286 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDI 357 (1866)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 357 (1866)
++.+.++-..+.+++..+.+|+...|.+|.+.|++.. .++ ........+. ..+.+..++-.| ...
T Consensus 20 d~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q---~sp--~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 20 DFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK---EHP--DAWTRVDTIL--EFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp SSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS---CCS--CHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCc--hHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhh
Confidence 3444455567889999999999999999999999876 122 1222222221 223344443322 366
Q ss_pred hhhcCCccCCCh-hhhhhhcC----C-----CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 358 WDRYGYDFGTDY-SGLFKALS----H-----SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 358 w~~~~~~~~~~~-~~ll~~l~----~-----~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
|...+.+-...+ ..+++.+. + +++.++.+.+++++.+.. .||+.|++.+..+++....
T Consensus 93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~----------- 161 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT----------- 161 (1073)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-----------
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-----------
Confidence 876544444444 55554442 2 367889999999999864 4787777777777765421
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCC
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 506 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~ 506 (1866)
+...+......|+.+.+.+.. |- ..-+ ...-+..+.+. +. .+++.+++.+...|+....
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d--------~~-~~~l---~~~r~~~lk~~----L~----~~~~~Il~ll~~iL~~~~~- 220 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFD--------FS-SGQI---TQVKAKHLKDS----MC----NEFSQIFQLCQFVMENSQN- 220 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT--------SH-HHHB---CHHHHHHHHHH----HH----HTCHHHHHHHHHHHHHCCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHh--------cc-cccc---cHHHHHHHHHH----HH----HHHHHHHHHHHHHhcccCC-
Confidence 112334444555555443211 00 0000 00111111111 11 2357788888888765321
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHH-HHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH-
Q 000201 507 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM- 584 (1866)
Q Consensus 507 ~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l-~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~- 584 (1866)
..+...+..++++....++.+.-.-..+++.+ ...|. +++++..+++|+..++....+...+.+..++..++
T Consensus 221 ----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 221 ----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp ----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34666677888877776643210002355655 35554 55799999999988876532222233333332221
Q ss_pred ------c-CCChhH--------HHHHHHHHHHHHhhhCcchhh----hcc-------hHHHHHHHHhCCCcHHHHHHHHH
Q 000201 585 ------K-SDKYGE--------RRGAAFGLAGVVKGFGISSLK----KYG-------IAATLREGLADRNSAKRREGALL 638 (1866)
Q Consensus 585 ------~-~~~~~~--------R~~A~~~L~~l~~~~g~~~l~----~~~-------ii~~L~~~i~~~~~~~~r~~al~ 638 (1866)
. ..+... -..-..+++.+....|..... ..+ .+..+...... .+...-.....
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~-~d~ei~kitf~ 373 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV-EETEIFKICLE 373 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-SCHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 0 001000 012233344333332211110 001 12222332222 33333334445
Q ss_pred HHHHHHHHhC-------------------------cCchhcHHhHHHHHHHHcCCCC----------------------H
Q 000201 639 AFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV----------------------V 671 (1866)
Q Consensus 639 al~~L~~~l~-------------------------~~~~p~v~~llp~ll~~~~D~~----------------------~ 671 (1866)
-+..+.+.+- ..+.|++.++...+...+.-|. .
T Consensus 374 fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~ 453 (1073)
T 3gjx_A 374 YWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSI 453 (1073)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHH
T ss_pred HHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchH
Confidence 4555555431 0155666777777776665221 1
Q ss_pred HHHHHHHHHHHHHHHhhcHh-hHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChh-hHHhhhcchhHHHhhhccC
Q 000201 672 AVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTD 747 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~-~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~~L~D 747 (1866)
.+++...+++..+. ++.+. ....+++.+-+.++. .+|+...+++.++|+|+.+... .-...++.+++.|+.+...
T Consensus 454 ~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~ 532 (1073)
T 3gjx_A 454 NLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ 532 (1073)
T ss_dssp HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc
Confidence 34555666665554 34333 346667776665543 5799999999999999976654 3557899999999988865
Q ss_pred C-----ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 748 T-----HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 748 ~-----~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
+ .+.|+...++.+|++.+++... . ..+..++..+.+++
T Consensus 533 ~~~kd~k~~vas~i~~vlgrY~~wl~~h--~-----------------------------------~~L~~vl~~L~~~m 575 (1073)
T 3gjx_A 533 KRGKDNKAIIASNIMYIVGQYPRFLRAH--W-----------------------------------KFLKTVVNKLFEFM 575 (1073)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHC--H-----------------------------------HHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHhhhHHHHHhC--H-----------------------------------HHHHHHHHHHHHHH
Confidence 4 4567888889999998877531 0 01222334444555
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCC------cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhH
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEP------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDL 895 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~------~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l 895 (1866)
.+.++.++..||.++..+|..+... .+..||++.++..+.....+-.++-......++|.++...+.+. .+.+
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~ 655 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 655 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 5666678888888888888754321 23457899999988888887778888889999999999888652 2333
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHhccCChh-HHh--HHHHHHHHhhhhhchhhHh
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQRAS-VRD--GYLTLFKYLPRSLGVQFQN 970 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~--~g~~~l~~ll~~l~~~l~~~~~~-vR~--~al~~l~~L~~~~g~~f~~ 970 (1866)
+..|+.... +.+..+... -+.+.+ . ++. ++. ..+.+...++...|..|.|
T Consensus 656 i~~Lm~~~~------------~~w~~l~~~~~~~~~~~-----------~--d~~~i~~l~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 656 IEKYMLLPN------------QVWDSIIQQATKNVDIL-----------K--DPETVKQLGSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHTHHHH------------HHHHHHHHHHHHCGGGG-----------G--CHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHH------------HHHHHHHHHhhcCchhc-----------c--ChHHHHHHHHHHhhhHHHHhhcchhHHH
Confidence 333332211 001111110 011111 0 111 111 2345666788899999999
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccc
Q 000201 971 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1050 (1866)
Q Consensus 971 ~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~ 1050 (1866)
++..+.+-++...+--...+ ...+..-+....+. ...+++ -.+|.+.++++...+.+
T Consensus 711 ~~~~i~~~~l~~y~~~s~~i--------~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~-------- 767 (1073)
T 3gjx_A 711 QLGRIYLDMLNVYKCLSENI--------SAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR-------- 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc--------
Confidence 99998887764321100111 11111101100000 011111 02566667777665421
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1051 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1051 ~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
.+ +.+.+ .+.+=....+.++...-... .-.++.|-.....++..+....+..+..++..++..-+.
T Consensus 768 -----~~----~~~~v----~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~ 834 (1073)
T 3gjx_A 768 -----SN----DPQMV----AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLN 834 (1073)
T ss_dssp -----CS----CHHHH----HHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHH
T ss_pred -----CC----CHHHH----HHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 00 11111 11110011111111111110 012344444444455555544444444455555444445
Q ss_pred hhc---CCCHHHHHHHHHHHHHHHHHhcccc-------ccchHHHHhcccCCCCccchhhHHHHHHHHHHh
Q 000201 1130 SLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1190 (1866)
Q Consensus 1130 ~l~---~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~ 1190 (1866)
.+. +..++.|..-.+.+..+...+.... ...++..+.-++++..+++-..++..+.+++.+
T Consensus 835 mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 835 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 554 5678999999999999998865532 233455555566676666666666666665544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=182.49 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=267.4
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+|.+++.++++++.+|..|+.+|..+...-.++.+..++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 777888888999999999999999876432232221100 0 0135677
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---C-
Q 000201 818 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N- 891 (1866)
Q Consensus 818 L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~- 891 (1866)
+.+.+++. ++.+|..++.++.+++.. .+.....+ -...+|.|..++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777776 789999999999999862 21111111 2458999999999999999999999999998743211 1
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g----~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
-...++.++..+.++.+..+|..++.+|+.++...+ .......+|.+...+.+.++.+|..++.+++.++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 125788888888865667799999999999986542 2244778899999999999999999999999988654322
Q ss_pred hHhHH-HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 968 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 968 f~~~l-~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
..... ..++|.++..+.++++.+|..++.++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 21111 23555566666555555655555554443321000
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhH-HHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1125 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l-~~l~~ 1125 (1866)
....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 02445555566777889999999999999877665544444 35667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccc-----cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhh-----
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1195 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~----- 1195 (1866)
.++..+.++++.+|..|+.+|+.++....+. +-..++|.+...+.++++.+|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 7777788889999999999999998753222 123578888888888899999999999998876433211
Q ss_pred -HHhhHhhH-----HHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000201 1196 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1196 -l~~~l~~l-----l~~l~~~L~d~~~~vr~~A~~al~~l~ 1230 (1866)
..+|...+ ++.+...+.+++.++++.|..++..++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12333333 455666666778888888887776654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=187.85 Aligned_cols=382 Identities=13% Similarity=0.091 Sum_probs=285.2
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
....+|.+...+.++++.+|..|..++..++..-.. ..+ ..++|.+++.|.++ +|.+|..|+.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445678888888999999999999999998764321 122 45899999999987 899999999999999987654
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-h-h-H-HhHHHHHHHhhCCCChhHH-HHHHHHHhccc
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF 802 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~-i-~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~ 802 (1866)
..... -..++|.++.++.++++.||..|+++|+.++..-.. . . + ..++|.|...+.+++..++ .++..|.....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43221 147899999999999999999999999999864211 1 1 1 4688999999988777776 46666655322
Q ss_pred c--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 803 V--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 803 ~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
. ..........++|.|.+.+.+.++.++..++.++++++.. .+....... ..+++.|..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 1 2223344567899999999999999999999999999862 222222222 2688999999999999999999999
Q ss_pred HHHHHhhcCCC---C-hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHh
Q 000201 880 IGSLIRGMGEE---N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 880 L~~l~~~~g~~---~-~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~ 951 (1866)
|+.++...+.. . -..++|.|...+.+. +..+|..++.+|+.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998632211 1 135788888888765 4668999999999987632211 11 35778888888889999999
Q ss_pred HHHHHHHHhhhhhch--hhHhHHH--HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------chh-----c
Q 000201 952 GYLTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1012 (1866)
Q Consensus 952 ~al~~l~~L~~~~g~--~f~~~l~--~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~i~-----~ 1012 (1866)
.++.+++.++...+. ....++- .++|.++..+.++++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999887544 4444443 38999999999999999999999999887654321 111 1
Q ss_pred hHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1013 LLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1013 llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.++.+.....+++..++..+..++..+
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356677777888888998888888775
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-13 Score=182.86 Aligned_cols=527 Identities=13% Similarity=0.061 Sum_probs=315.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-hhh-hcc
Q 000201 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-SLK-KYG 615 (1866)
Q Consensus 538 l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~l~-~~~ 615 (1866)
-++.++..|.+++++++..++..+...-. ..-....++.+...| .+++..+|..|+.+|..+....... .+. ..+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~--~~i~~g~ip~Lv~lL-~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDD--AELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhH--HHHHhCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 35678888888888888877776543211 111244566666544 4667889999999999998743211 111 225
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-- 691 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-- 691 (1866)
+++.|.+.+.+..++..|..|+.++..++..... ...+ ...+|.+...+.++++.+|..|.++|..++......
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 7888888887656788888899888887653211 1111 257899999999999999999999999998754332
Q ss_pred hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-hhcchhHHHhhhccCCChH-HHHHHHHHHHHHHhhc
Q 000201 692 GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVI 767 (1866)
Q Consensus 692 ~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~-VR~aA~~aL~~l~~~i 767 (1866)
.+ ...+|.+++.|.+++++++..++.+|..++...++.... .-...++.++.++.+.+++ ++..++.+|..++..-
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 12 468999999999999999999999999888754432111 1125678888888877655 4567888888887532
Q ss_pred cch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 768 KNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 768 ~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
.+. .+ ...+|.|...+.+++..++ .++..+........ .......++|.|.+.+.+.++++|..|+.++++++..
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 221 22 3578999999988876555 55555544221111 1122457899999999999999999999999999862
Q ss_pred cCCCcchhhh-HhhhhHHHHHHhcC-CC-HhHHHHHHHHHHHHHhhcCCCC-------hhhHHHHHHHhcccCCCHHHHH
Q 000201 844 VTEPKDMIPY-IGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVERS 913 (1866)
Q Consensus 844 l~~~~~l~~~-~~~ll~~L~~~l~d-~~-~~vR~~a~~aL~~l~~~~g~~~-------~~~l~~~L~~~L~~~~~~~~R~ 913 (1866)
........ -...++.|...+.+ .. ..+|..|+.+|+.++...++.. -...+|.|.+.+.+.....+|.
T Consensus 430 --~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~ 507 (780)
T 2z6g_A 430 --NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 507 (780)
T ss_dssp --CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHH
Confidence 21111111 12356777777765 23 4899999999999875333210 1246788888888776656899
Q ss_pred HHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHH
Q 000201 914 GAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 990 (1866)
Q Consensus 914 ~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~V 990 (1866)
.++..|+.++..-... .+ ..++|.+++.+.+.++.+|..+.++++.-....|.............+.....+ +..
T Consensus 508 ~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~ 585 (780)
T 2z6g_A 508 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHN 585 (780)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhh
Confidence 9999999987521111 11 246677777776655555544333333200000111111111122222222111 111
Q ss_pred HHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHH
Q 000201 991 RDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1070 (1866)
Q Consensus 991 R~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l 1070 (1866)
|.. +.. ...+|.+...+.+.+..++..++..++.+... ......
T Consensus 586 ~~~-------l~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~---------------------~~~~~~- 629 (780)
T 2z6g_A 586 RIV-------IRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---------------------KEAAEA- 629 (780)
T ss_dssp HHH-------HHH-------TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS---------------------HHHHHH-
T ss_pred HHH-------HHH-------CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---------------------HHHHHH-
Confidence 110 000 01334444445555555665555555554200 000011
Q ss_pred HHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1071 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1071 ~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
+...| .++.|.....+.+..||..|..+|..++.+.+..+
T Consensus 630 i~~~g------~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 630 IEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp HHHTT------CHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHCC------CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 11111 23444455678889999999999999998776433
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-14 Score=180.77 Aligned_cols=388 Identities=14% Similarity=0.112 Sum_probs=281.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
.++.++..| .++++..|..|++.|..++.... ...+...+++|.|.+.+.+.+++..|..|+.+++.++.+.....
T Consensus 75 ~l~~lv~~L-~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGV-YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 455566666 45678899999999999887543 12333457899999999887668899999999999997432211
Q ss_pred hhcHH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhc-CCCChhhHHHHHHHHHHHHhh
Q 000201 652 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 652 ~p~v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L-~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
...+. ..+|.++..+.++++.||..|.+++..++..-+.. .+ ...+|.++..| .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 58999999999999999999999999998643321 12 24789999999 678999999999999999987
Q ss_pred ChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcccccc
Q 000201 726 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 805 (1866)
Q Consensus 726 ~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~ 805 (1866)
.+.........++|.+..++.+.++.|+..|+++|..++.... ..++.+ .
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~----~------------------------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAV----I------------------------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHH----H-------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHH----H-------------------------
Confidence 5443334457899999999999999999999999999985321 111100 0
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCC-CHhHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 883 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l 883 (1866)
-..++|.+...+.+.++.++..|+.++++++.. ......... ..+++.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 113567777778888889999999999999862 221111122 35788899999988 999999999999999
Q ss_pred HhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHhHHH
Q 000201 884 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 954 (1866)
Q Consensus 884 ~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~~al 954 (1866)
+....+. .-..++|.|+..+.+. +..+|..++.+|+.++.....+.. ...++.+...+.++++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632111 1125678888887765 456899999999999876444422 35678899999999999999999
Q ss_pred HHHHHhhhhhchh----------hHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 955 TLFKYLPRSLGVQ----------FQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 955 ~~l~~L~~~~g~~----------f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++..+....+.. +..++.. .++.+.....+++++++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999998765431 2222221 245566666777788877776665543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-11 Score=170.01 Aligned_cols=782 Identities=12% Similarity=0.081 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 574 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 574 ~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
..+..++..+.+.+ ...|+.|-..|..+-+.. +.+ ..+...+.+..+...|..|...+......-...+.+
T Consensus 16 ~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p--~~~------~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNP--DAW------QKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHST--TGG------GGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCc--hHH------HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 44555555555444 457888888887765432 221 122233333456788888888888777643222222
Q ss_pred ----cHH-hHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000201 654 ----YVI-QMLPLLLVAFSDQ-----VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 723 (1866)
Q Consensus 654 ----~v~-~llp~ll~~~~D~-----~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~ 723 (1866)
++. .++..+.....++ +..||.....++..|+..--+..++.+++.+++.+. .+...+..++.+|..+.
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 222 2444444333233 478999999999999988656677889999999886 45556777777777766
Q ss_pred hhCh----------------hhHHhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC
Q 000201 724 YCAP----------------QQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786 (1866)
Q Consensus 724 ~~~~----------------~~~~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~ 786 (1866)
+-.. +.+..+++.+++.+..++++. ++.++..+.+|+..+..++..+.+. .
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~----------~-- 233 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIY----------E-- 233 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH----------S--
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHh----------h--
Confidence 4321 223444566666666666532 4567777777777665544322110 0
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
..+++.+...+. .++++|..|++++..++.. . +.++.......+...+
T Consensus 234 -------------------------~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~--~---~~~~~~~~~~~~~~l~- 281 (1049)
T 3m1i_C 234 -------------------------TNILELLSTKFM-TSPDTRAITLKCLTEVSNL--K---IPQDNDLIKRQTVLFF- 281 (1049)
T ss_dssp -------------------------SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC--C---CCTTCHHHHHHHHHHH-
T ss_pred -------------------------hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC--C---CCcchhhHHHHHHHHH-
Confidence 012222221111 1457777777777777652 1 1111000001111000
Q ss_pred CCCHhHHHHHHHHHHHHHh-hcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh------C---hhHHHHHHH
Q 000201 867 DPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL------G---TVYFEHILP 936 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~-~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~------g---~~~l~~ll~ 936 (1866)
...+..+.. .++.. ..+.+.+... ++.+.......+..+..++... + ...+..+++
T Consensus 282 ----------~~~l~~l~~si~p~~--~~l~~~~~~~--~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 347 (1049)
T 3m1i_C 282 ----------QNTLQQIATSVMPVT--ADLKATYANA--NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQ 347 (1049)
T ss_dssp ----------HHHHHHHHHHTCCTT--SCHHHHHHHT--CTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhCCCc--ccHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 000111111 00000 0011111000 1111112222222222222110 0 123455666
Q ss_pred HHHHHhccCChhHHhHHHHHHHHhhhh------hchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccch
Q 000201 937 DIIRNCSHQRASVRDGYLTLFKYLPRS------LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1010 (1866)
Q Consensus 937 ~l~~~l~~~~~~vR~~al~~l~~L~~~------~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i 1010 (1866)
.++.....++..++..++..|..++.. ....+.+++..+++.++..+.-+++.. ....+..
T Consensus 348 ~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~-------------~~~dd~~ 414 (1049)
T 3m1i_C 348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-------------VVENDEG 414 (1049)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCC-------------EEECTTS
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCccee-------------eeeCCCC
Confidence 677666677888899999999888773 235677889999998888775432110 0000000
Q ss_pred hchHHhHhccc-CCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh
Q 000201 1011 PLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV 1089 (1866)
Q Consensus 1011 ~~llp~l~~~l-~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~ 1089 (1866)
+ .+.... +++.|..|.++.+++..+... .+.+...-+++.+-..
T Consensus 415 e----~~r~~~~d~d~~~~~~~~~~~L~~l~~~-------------------------------~~~~~l~~v~~~l~~~ 459 (1049)
T 3m1i_C 415 E----IVREFVKESDTIQLYKSEREVLVYLTHL-------------------------------NVIDTEEIMISKLARQ 459 (1049)
T ss_dssp C----EEECSSCCHHHHHHHHHHHHHHHHHHHH-------------------------------CHHHHHHHHHHHHHHH
T ss_pred c----chHhhhccchHHHHHHHHHHHHHHHHcc-------------------------------CHHHHHHHHHHHHHHH
Confidence 0 000111 123455665555555444211 0111111111111111
Q ss_pred c--CCCcHHHHHHHHHHHHHHhhcChhhH-HHhHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHhcc--cccc
Q 000201 1090 R--SDVSLSVRQAALHVWKTIVANTPKTL-KEIMPVLMNTLISSLA-----SSSSERRQVAGRALGELVRKLGE--RVLP 1159 (1866)
Q Consensus 1090 ~--~D~~~~vR~~A~~~l~~l~~~~p~~l-~~~l~~l~~~L~~~l~-----~~~~~~R~~A~~~L~~lv~~~~~--~~l~ 1159 (1866)
. ...+|..|++|+-+++.++....... ..+++.+++.+..... ++.+.+|..++.+++++.+.+.. ..++
T Consensus 460 l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~ 539 (1049)
T 3m1i_C 460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR 539 (1049)
T ss_dssp HTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2 24689999999999999987665442 3467888887765332 13344555688888877765433 4678
Q ss_pred chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH-------HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 000201 1160 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232 (1866)
Q Consensus 1160 ~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~ 1232 (1866)
.+++.+..++.++++.++..||.++..+...+..... .+|++.++..+...+.+.+.+-.....++++.+...
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 8888888889888899999999999999887764322 388999999888888877666667777888888776
Q ss_pred hch-hhH----hhHHHHHHHhccCCCchhHHHHHHHHHhhcccc--ccc--hhhhhhhhcCCccchhHHHHHHHHHHhCC
Q 000201 1233 AGM-QAI----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTT--AVL--PHILPKLVHLPLSAFNAHALGALAEVAGP 1303 (1866)
Q Consensus 1233 ~g~-~~~----~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~--~il--p~Lip~L~~~~~~~~~~~al~~La~~~g~ 1303 (1866)
.+. ... ..+++.++..+. .++..... ... +.-...+ ......+..++...|.
T Consensus 620 ~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~d~~~~~~l------~~~l~~~~~~~~~l~~ 680 (1049)
T 3m1i_C 620 ERSVAERNRLLSDLMQLPNMAWD-------------TIVEQSTANPTLLLDSETVKII------ANIIKTNVAVCTSMGA 680 (1049)
T ss_dssp CCSHHHHHHHHHHHTHHHHHHHH-------------HHHHHHHHCGGGGGSHHHHHHH------HHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhchhhhcCHHHHHHH------HHHHHHHHHHHHHhhH
Confidence 662 222 233333333221 11100000 000 0000000 0001223344444555
Q ss_pred CchhhHhhHHHHHHHhcCC-----------------CCHH------HHHHHHHHHhHhhhccc------hhcHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVID------EEGVESLVSEL 1354 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~-----------------~~~~------vr~~a~~~l~~l~~~~~------~~~~~~ll~~L 1354 (1866)
.|.+++..+++.++..+.. ..+. +.......+........ .+.++.++..+
T Consensus 681 ~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 681 DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5555555554443321110 0000 00001111111111111 12234444444
Q ss_pred HhccCCCchhHH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHH----hC---CCChhHHHHHHHHHHHHHhcCCcchh
Q 000201 1355 LKGVGDNQASIR-RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL----LS---DSDSTTVAAAWEALSRVVASVPKEVQ 1426 (1866)
Q Consensus 1355 ~~~l~~~~~~vR-~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l----l~---d~~~~v~~~A~~aL~~l~~~~~~~~l 1426 (1866)
+..........| ..++.+++.++...+..+.+|++.++..++.. +. +.+++++...+..++++++..+...+
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 443221111111 34677777777666667778888888777765 32 46789999999999999987765432
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh----hh-
Q 000201 1427 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE----QS- 1501 (1866)
Q Consensus 1427 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~----~~- 1501 (1866)
+. . |..+..++...+.++.....+....++..+..++..... +.
T Consensus 841 ~~---------~----------------------~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 889 (1049)
T 3m1i_C 841 EL---------P----------------------PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFA 889 (1049)
T ss_dssp HS---------C----------------------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHH
T ss_pred cC---------C----------------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 10 0 011223444555566667777888888888887765421 11
Q ss_pred ---hhhhhhhhhHHHHHHhcCCC
Q 000201 1502 ---LKEFVIPITGPLIRIIGDRF 1521 (1866)
Q Consensus 1502 ---l~~~v~~i~~~Li~~l~~~~ 1521 (1866)
++.|...++..++.++.+..
T Consensus 890 ~~f~~~~~~~l~~~~~~~l~~~~ 912 (1049)
T 3m1i_C 890 NEFHKNYFFIFVSETFFVLTDSD 912 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcch
Confidence 22333445555555665543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-14 Score=185.36 Aligned_cols=388 Identities=13% Similarity=0.128 Sum_probs=282.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCc---chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~---~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..| .++++..|..|+..|..++..... ..+...+++|.|.+.+.+..++..|..|+.+++.++.+... ..
T Consensus 89 i~~lv~~L-~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~ 166 (530)
T 1wa5_B 89 LPQMTQQL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QT 166 (530)
T ss_dssp HHHHHHHH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HH
Confidence 44455555 455678888999999888764211 22334578999999988765788999999999988864321 11
Q ss_pred hcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC
Q 000201 653 PYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 726 (1866)
Q Consensus 653 p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~ 726 (1866)
..+ ..++|.++..+.++++.||..|.+++..++...+.. . + ..++|.++..+.+.++.++..++.+|+.++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 222 357889999999999999999999999998643221 1 1 457899999999999999999999999999765
Q ss_pred -hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcccccc
Q 000201 727 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 805 (1866)
Q Consensus 727 -~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~ 805 (1866)
+.........++|.+..++.+.++.||..|+++|..++.... ..... +.
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~----~~------------------------- 296 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQA----VI------------------------- 296 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHH----HH-------------------------
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-HHHHH----HH-------------------------
Confidence 332223346889999999999999999999999999985321 01110 00
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
-..++|.+...+.+.++.+|..|+.++++++.. ......... ..+++.|..++.++++.+|..|+.+|+.++
T Consensus 297 -----~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 297 -----DVRIPKRLVELLSHESTLVQTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp -----HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -----hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 013567777788888899999999999999862 211111112 368899999999999999999999999998
Q ss_pred hhcCCC---Ch-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh--hHH-----HHHHHHHHHHhccCChhHHhHH
Q 000201 885 RGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF-----EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 885 ~~~g~~---~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~--~~l-----~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
....+. .+ ..++|.|+..+.+. +..+|..++.+|+.++...+. +.. ...+|.+...+.+.++.+|..+
T Consensus 370 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 370 AGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 632211 11 34677777777654 456899999999999887554 322 2478889999999999999999
Q ss_pred HHHHHHhhhhhchh-------hHhHHHH-----HHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 954 LTLFKYLPRSLGVQ-------FQNYLQQ-----VLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 954 l~~l~~L~~~~g~~-------f~~~l~~-----il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
+.++..+....... ..+|... .++.+...+.+++++|+..+..++..+..
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999988765432 1233332 47778888889999999988877766553
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=179.55 Aligned_cols=381 Identities=14% Similarity=0.111 Sum_probs=283.1
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCCCC-hhhHHHHHHHHHHHHhhChhhH
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~~~-w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
.-+|.++..+.++++.+|..|..++..++..-.. ..+ ..++|.|++.|.+++ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4578888888999999999999999999775431 122 468999999999886 9999999999999998765543
Q ss_pred Hhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhh-CCCChhHH-HHHHHHHhcccc
Q 000201 731 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 803 (1866)
Q Consensus 731 ~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l-~d~~~~vr-~al~~L~~~~~~ 803 (1866)
.... ...+|.++.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++..|......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2222 26889999999999999999999999999853211 112 35788999998 56666665 455555553222
Q ss_pred -ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 804 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 804 -~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
..........++|.|.+.+.+.+++++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222334567899999999999999999999999999862 21111122 2358899999999999999999999999
Q ss_pred HHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHH
Q 000201 882 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 882 ~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
.++...... .-..++|.|...+.+..+..+|..++.+|+.++...... .-..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998632211 113578888888876635678999999999988632211 113677899999988999999999
Q ss_pred HHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------c---hh--chHHh
Q 000201 954 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLLPA 1016 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~---i~--~llp~ 1016 (1866)
+.+++.++.........|+ ..+++.++..+.+++++++..++.++..++...... . +. ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987555555665 468999999999999999999999999887643220 0 11 12445
Q ss_pred HhcccCCCchHHHHHHHHHHHHH
Q 000201 1017 VEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1017 l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+.....+.+..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 55666777888888888877765
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=180.85 Aligned_cols=506 Identities=11% Similarity=0.072 Sum_probs=323.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-Hhhhcc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPK 736 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~ 736 (1866)
-+|.++..+.+++..+|.++...+..+-.. .-....+|.|...|.+++..+|..|+.+|+.++....... ....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 356677778888899999888877654221 1126678889888889999999999999999997543221 112346
Q ss_pred hhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 737 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 737 iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
+++.|+..|.+ .++.+|..|+.+|..++..-.+ . ..+. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~----~~i~------------------------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--L----LAIF------------------------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--H----HHHH------------------------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--H----HHHH------------------------------HcCCH
Confidence 88888888874 4899999999999987653110 0 0000 01346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 890 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---- 890 (1866)
|.|.+.+++.+..+|..|+.++.+++..-.. ....+ -...++.|..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777788888889999999999999874221 11122 2468899999999999999999999999887521110
Q ss_pred ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--H-HHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 891 ~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~-l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
.-...++.|+..+++......+..++..|..++..-... . -...++.++..+.+.+..++..++.++..++......
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 112457777777776655444445556666655321111 1 1345788888888888999999999999998766432
Q ss_pred hHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---ch-hchHHhHhcccCC-Cch-HHHHHHHHHHHHHHH
Q 000201 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1041 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i-~~llp~l~~~l~d-~~w-~vR~~s~~ll~~ll~ 1041 (1866)
.....++|.++..+.++++.+|..+..++..+...-... .+ ...+|.+...+.+ .++ .+|..++..++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568899999999999999999999988775432110 00 1144555555543 233 789999988887621
Q ss_pred HhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhcChhhHHH--
Q 000201 1042 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKE-- 1118 (1866)
Q Consensus 1042 ~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~-~~vR~~A~~~l~~l~~~~p~~l~~-- 1118 (1866)
. +. +.+.....+... ..++.|...+.+.+ +.+|..|+.+++.++.+.. ....
T Consensus 473 ~--------------~~---~~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQ---DAEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLR 527 (780)
T ss_dssp S--------------ST---THHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHH
T ss_pred c--------------Cc---hHHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 0 00 000011111111 13445555555444 5899999999999986432 2111
Q ss_pred ---hHHHHHHHHHHh----------------hcC--CCHHHHHHHHHHHHHHHHHhccc---cccchHHHHhcccCCCCc
Q 000201 1119 ---IMPVLMNTLISS----------------LAS--SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1174 (1866)
Q Consensus 1119 ---~l~~l~~~L~~~----------------l~~--~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1174 (1866)
.++.++..+... +.+ ..++++..++.+|+.++...... .-...+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 234444433211 000 12456777888888775321100 124567888888889999
Q ss_pred cchhhHHHHHHHHHHhhchhhHHhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1175 SRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1175 ~vr~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
.++..++.+|..+... +. ....+ ...++.+...+.+.+++||..|..++..+.....
T Consensus 608 ~v~~~a~~aL~~L~~~--~~-~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC--HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999887532 11 22222 2357778888999999999999999999876544
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-15 Score=166.85 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=172.4
Q ss_pred HHcCCChhHHHHHHHHHHH-HHhhhCc-c--hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-cCch-hcHH
Q 000201 583 LMKSDKYGERRGAAFGLAG-VVKGFGI-S--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVI 656 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~-l~~~~g~-~--~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~-~~~~-p~v~ 656 (1866)
.+.+++|..|++|...|.. ++.+... . .....+++..|.+.+.++.+...|..|+.+++.++++++ ..|. +|..
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 3478899999999999999 8865321 1 122246788888888656678899999999999999999 8899 9999
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---h-HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh---hh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQ 729 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~-v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---~~ 729 (1866)
.++|.++..++|....||+++..++..++..+++. . +..+++.++..|++++|++|.+++.+|+.++...+ ..
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 99999999999999999999999999999988543 2 46899999999999999999999999999998876 66
Q ss_pred HHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHH
Q 000201 730 LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779 (1866)
Q Consensus 730 ~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 779 (1866)
+..++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 88899 999999999999999999999999999999999988777777765
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-10 Score=156.43 Aligned_cols=772 Identities=12% Similarity=0.091 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+.++.++..+.+.++ ..|+.|-..|..+-+.. +.. .+. ...+....++..|..|+..+......-...+.
T Consensus 15 v~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp--~aw---~~~---~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNP--DAW---QKA---DQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCT--TGG---GGH---HHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCc--cHH---HHH---HHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4556666666666554 47777877777666543 222 112 22223344678888888877777664322222
Q ss_pred h----cH-HhHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 000201 653 P----YV-IQMLPLLLVAFSDQ-----VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p----~v-~~llp~ll~~~~D~-----~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l 722 (1866)
+ .+ ..++..+.....++ ...++.....++..++...-+..++.+++.+++.+.++ .......+.+|..+
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 1 22 23555555544343 46788889999999998877777889999999988653 34455666666665
Q ss_pred HhhCh----------------hhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhH--HhHHHHHHHhh
Q 000201 723 AYCAP----------------QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGL 783 (1866)
Q Consensus 723 ~~~~~----------------~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~L~~~l 783 (1866)
.+-.. +.+...++.+++.+..++.+ .++.+...+.+|++.+..++.-..+ ..+++.+..
T Consensus 165 ~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~-- 242 (1023)
T 4hat_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLST-- 242 (1023)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT--
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHH--
Confidence 54310 12344556666666666643 4567777777777777776542222 223333330
Q ss_pred CCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc--chhhhHhhhhHHH
Q 000201 784 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK--DMIPYIGLLLPEV 861 (1866)
Q Consensus 784 ~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~--~l~~~~~~ll~~L 861 (1866)
..+. +++.|..|++++..++..-..+. .....+..+.+.+
T Consensus 243 ------------------------------------~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~ 284 (1023)
T 4hat_C 243 ------------------------------------KFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1023)
T ss_dssp ------------------------------------HHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHH
Confidence 3332 34567777777776664110001 1111111111111
Q ss_pred HHHh----cCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh-----hHHH
Q 000201 862 KKVL----VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-----VYFE 932 (1866)
Q Consensus 862 ~~~l----~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~-----~~l~ 932 (1866)
...+ -...... -+.+.. .++.+.....+.+..+.+++..... ..+.
T Consensus 285 l~~l~~~i~p~~~~l-----------------------~~~~~~--~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~ 339 (1023)
T 4hat_C 285 LQQIATSVMPVTADL-----------------------KATYAN--ANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1023)
T ss_dssp HHHHHHHTCCTTCCH-----------------------HHHHHH--TCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGH
T ss_pred HHHHHHHhCCCcchH-----------------------HHHHhc--cccchHHHHHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 1111 0000000 011100 0000010111111111111111000 0011
Q ss_pred HH----HHHHHHHhccCChhHHhHHHHHHHHhhhhh------chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 000201 933 HI----LPDIIRNCSHQRASVRDGYLTLFKYLPRSL------GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 933 ~l----l~~l~~~l~~~~~~vR~~al~~l~~L~~~~------g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~ 1002 (1866)
++ +..++.....++.++-..++..|..+.... ...|.|++.++++.++..+.-+.+..- +
T Consensus 340 ~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~i----------v 409 (1023)
T 4hat_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV----------V 409 (1023)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCE----------E
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCccccc----------C
Confidence 11 123333334456666566677777666533 235788888999988888765532100 0
Q ss_pred HhhcccchhchHHhHhcccCCC----chH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 1003 EHYATTSLPLLLPAVEDGIFND----NWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 1003 ~~~~~~~i~~llp~l~~~l~d~----~w~-vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
..-..+.++ ....|. .|+ .| +.+..+ ....+.+
T Consensus 410 e~d~~~~~~-------e~~~d~d~~~~f~~~R----d~L~~l-------------------------------~~l~~~~ 447 (1023)
T 4hat_C 410 ENDEGEIVR-------EFVKESDTIQLYKSER----EVLVYL-------------------------------THLNVID 447 (1023)
T ss_dssp ECTTSCEEE-------CSSCCGGGHHHHHHHH----HHHHHH-------------------------------HHHCHHH
T ss_pred CCCCccHHH-------HhccchHHHHHHHHHH----HHHHHH-------------------------------hccCHHH
Confidence 000000000 001111 222 22 222211 1111111
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHH
Q 000201 1078 KRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~-----~~~~~R~~A~~~L~~l 1149 (1866)
....+++.+.... .+.+|..|++++-++++++.+... ...+++|.+++.++..+.+ +...+|..++.++|+.
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 1112222222222 246899999999999999986554 3678999999988887652 3345677788899887
Q ss_pred HHHhc--cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH-------HhhHhhHHHHHHHhhcCCcHHHHH
Q 000201 1150 VRKLG--ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRE 1220 (1866)
Q Consensus 1150 v~~~~--~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~~~~vr~ 1220 (1866)
.+.+. +..++.++..+.+++.++++.+...||.++..+...+..... .+|++.++..+.....+-++.-+.
T Consensus 528 ~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 76653 346788888888899888889999999999999888765432 468899998888888777788888
Q ss_pred HHHHHHHHHHHHhchhh-HhhHHHHHHHhccCCCchhHHHHHHHHHhhc--cccccc------hhhhhhhhcCCccchhH
Q 000201 1221 SAGLAFSTLFKSAGMQA-IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVL------PHILPKLVHLPLSAFNA 1291 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g~~~-~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~--~~~~il------p~Lip~L~~~~~~~~~~ 1291 (1866)
...++++.+....+... ...++..|+..+ ...+.+++.. ....++ ..+.+ ..
T Consensus 608 ~lyeai~~vi~~~~~~~~~~~~l~~L~~~~---------~~~~~~l~~~~~~~~~~~~d~~~~~~l~~----------il 668 (1023)
T 4hat_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLP---------NMAWDTIVEQSTANPTLLLDSETVKIIAN----------II 668 (1023)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHCTTGGGCHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHHhH---------HHHHHHHHHHHhcCchhhcCHHHHHHHHH----------HH
Confidence 88889999988776432 233333332211 1111122110 000000 11111 12
Q ss_pred HHHHHHHHHhCCCchhhHhhHHHHHHHhcCCC-----------------CHH------HHHHHHHHHhHhhhccch----
Q 000201 1292 HALGALAEVAGPGLNFHLGTILPALLSAMGDD-----------------DMD------VQSLAKEAAETVTLVIDE---- 1344 (1866)
Q Consensus 1292 ~al~~La~~~g~~l~~~l~~il~~L~~~l~~~-----------------~~~------vr~~a~~~l~~l~~~~~~---- 1344 (1866)
+.+++++...|..+.+++..+++.+++..+.- .+. +|....+.+...+....+
T Consensus 669 ~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~ 748 (1023)
T 4hat_C 669 KTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDV 748 (1023)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 35566777788999999998888887542211 111 222233333333332221
Q ss_pred --hcHHHHHHHHHhccCCCchhHHHH-HHHHHHHHHhhccchhhhhHHHHHHHHHH----HhCC---CChhHHHHHHHHH
Q 000201 1345 --EGVESLVSELLKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEAL 1414 (1866)
Q Consensus 1345 --~~~~~ll~~L~~~l~~~~~~vR~~-a~~~l~~l~~~~~~~~~~~~~~il~~L~~----ll~d---~~~~v~~~A~~aL 1414 (1866)
.-+++++..++.......+..|.. .+.+...++..-+..+.+.++.++..++. ++++ ..++.|..-+.-+
T Consensus 749 ~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll 828 (1023)
T 4hat_C 749 VKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLL 828 (1023)
T ss_dssp HHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 235666666666555555555544 45566666666666677777888777764 4543 5677888888777
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 1494 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~ 1494 (1866)
.++..+.+...+. ++ +..+..++...+-++.....++-..+...+.++.
T Consensus 829 ~~~~~~~f~~~~~---------------------------~~----~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll 877 (1023)
T 4hat_C 829 KVINEKSFAAFLE---------------------------LP----PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLV 877 (1023)
T ss_dssp HHHHHHCTHHHHT---------------------------SC----HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHChHHHHc---------------------------CC----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 7777665432211 00 0112223444445566666677677777776666
Q ss_pred hhcC--------hhhhhhhhhhhhHHHHHHhcCCC
Q 000201 1495 EVTS--------EQSLKEFVIPITGPLIRIIGDRF 1521 (1866)
Q Consensus 1495 ~~~~--------~~~l~~~v~~i~~~Li~~l~~~~ 1521 (1866)
.... ..-++.|...++.-++.++.|..
T Consensus 878 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 878 KNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 5432 11234455556666666676653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=165.81 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=165.0
Q ss_pred HcCCChhHHHHHHHHHHHHHhhhC-cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHH
Q 000201 584 MKSDKYGERRGAAFGLAGVVKGFG-ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 662 (1866)
Q Consensus 584 ~~~~~~~~R~~A~~~L~~l~~~~g-~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~l 662 (1866)
.++++|.+|++|+.+|..++.+.+ ...-...++++.|...+.++.+..+|.+|+.+++.++..++..|.+|+..++|.+
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 368899999999999999998732 1111224688888888863467899999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC-hhh-HHhhhcchhHH
Q 000201 663 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQ-LSQCLPKIVPK 740 (1866)
Q Consensus 663 l~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~-~~~-~~~~l~~iv~~ 740 (1866)
+..++|++..||+++..++..++...+ ++.++|.+...+++++|++|..++..|+.++... |+. ...+++.++|.
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTS 180 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 999999999999999999999998764 5789999999999999999999999999987765 443 56788999999
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 181 l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 181 LVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999988655554444
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-12 Score=173.29 Aligned_cols=453 Identities=12% Similarity=0.058 Sum_probs=309.9
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcch-h-hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISS-L-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQM 658 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~-l-~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~l 658 (1866)
++.++++.+|..|+..|..++....... + ...++++.|.+.+.+..++..+..|+.++..++.... ....+ ...
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~g~ 99 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGG 99 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--HHHHHHTTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHHHHHHcCC
Confidence 3346677889999999998887543111 1 1125778888888776677888888888887764321 11111 258
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh--H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-h
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-C 733 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~--v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~ 733 (1866)
+|.+..++.++++.+|..|.+++..++....... + ...+|.+++.|.+++++.+..++.+|..++...++.-.. .
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~ 179 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8999999999999999999999999987643221 2 468999999999999999999999999999765433111 1
Q ss_pred hcchhHHHhhhccCCC-hHHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCc
Q 000201 734 LPKIVPKLTEVLTDTH-PKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~-~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~ 808 (1866)
-...++.++.++.+.+ ..++..++.+|..++..-.+. .+ ...++.|.+.+.+++..++ .++..|....... ...
T Consensus 180 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~-~~~ 258 (644)
T 2z6h_A 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQ 258 (644)
T ss_dssp HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC-TTC
T ss_pred HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc-hhh
Confidence 1266888888888654 567889999999887532221 12 3578999999988877666 4555555432211 111
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHh
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~ 885 (1866)
.....++|.|.+.+.+.++++|..++.++++++.. .+..... .-...++.|..++.+. .+.+|..++.+|+.++.
T Consensus 259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 23457899999999999999999999999999862 2111111 1123677777777653 37999999999999975
Q ss_pred hcCCC-C------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-H--HHHHHHHHHHHhccCC---------
Q 000201 886 GMGEE-N------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-Y--FEHILPDIIRNCSHQR--------- 946 (1866)
Q Consensus 886 ~~g~~-~------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~--l~~ll~~l~~~l~~~~--------- 946 (1866)
..+++ . ....+|.|.+.+.+..+..++..++..|+.++..-... . -...+|.+++.+.+.+
T Consensus 337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~ 416 (644)
T 2z6h_A 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416 (644)
T ss_dssp SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence 43321 0 12578889888887665668999999998876532111 1 1345666666655433
Q ss_pred -------------hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc-ccch--
Q 000201 947 -------------ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL-- 1010 (1866)
Q Consensus 947 -------------~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~-~~~i-- 1010 (1866)
..+++.++.++..++........-.-...+|.+...+.+.+++++..+..++..+...-. ...+
T Consensus 417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~ 496 (644)
T 2z6h_A 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496 (644)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred ccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345666677777776543222111123578999999999999999999988887664200 0011
Q ss_pred hchHHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 1011 PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 1011 ~~llp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
...++.+.+.+.+++..+|..+...++.+.
T Consensus 497 ~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 497 EGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 114567777788899999999999998863
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-12 Score=170.04 Aligned_cols=468 Identities=14% Similarity=0.075 Sum_probs=316.9
Q ss_pred cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc--HHhHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcH
Q 000201 614 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSA 690 (1866)
Q Consensus 614 ~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~--v~~llp~ll~~~~D-~~~~VR~~a~~al~~i~~~l~~ 690 (1866)
.+.++.|...+.+ .++..|+.|+.+++.++...... ... ...+++.+...+.+ ++..+|..+..++..+...-..
T Consensus 13 ~g~i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 13 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp TTTHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hchHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3568888888875 46789999999999998754311 111 12567888877765 4899999999999877654221
Q ss_pred hh-H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 691 QG-V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 691 ~~-v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.. + ...+|.+++.|.+++..+|..|+.+|..++...+...... -..++|.+++++.+.+++++..++.+|..++..
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 11 1 3578999999999999999999999999998754332221 147899999999999999999999999998852
Q ss_pred ccch--hH--HhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccCCcc-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 IKNP--EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i~~~--~i--~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~~~~-~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
..+. .+ ...++.|.+.+.+++. .++ .++..+............ .-...+|.+.+.+.+.+..++..++.++.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2110 11 3568888888887653 333 344444443222111111 112468889999999999999999999999
Q ss_pred HhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCC-CHHHHHH
Q 000201 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSG 914 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~-~~~~R~~ 914 (1866)
++...... .....+++.|..++.+.++.+|..++.+|+.++..-.+. .-...++.|+..+.+.. ...++..
T Consensus 251 L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 251 LSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 98743221 223468899999999999999999999999998642111 01246777777776533 2568889
Q ss_pred HHHHHHHHHHHhChh-H------HHHHHHHHHHHhccCC-hhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhccC
Q 000201 915 AAQGLSEVLAALGTV-Y------FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLAD 985 (1866)
Q Consensus 915 a~~~L~~l~~~~g~~-~------l~~ll~~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~d 985 (1866)
++.+|+.++...+.. . ....+|.+.+.+.+++ +.+|..++.+++.++..-... .... ..++|.++..+.+
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhc
Confidence 999999886543321 1 1356788888888774 799999999999998654322 1121 3466767666654
Q ss_pred C----------------------ChHHHHHHHHHHHHHHHhhcc-cch--hchHHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 986 E----------------------NESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 986 ~----------------------~~~VR~~a~~al~~i~~~~~~-~~i--~~llp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
. +++++..+..++..+...-.. ..+ ...+|.+...+.+.+..++..+...++.+.
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 345666666666655432110 011 125778888888888999999988888764
Q ss_pred HHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1041 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1041 ~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
.. ..... .+...| .++.|.....+.+..||+.|..+++.++...+..+
T Consensus 486 ~~---------------------~~~~~-~i~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 486 QD---------------------KEAAE-AIEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp TS---------------------HHHHH-HHHHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred cC---------------------HHHHH-HHHHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 10 01111 122222 24445555788899999999999999987765433
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-13 Score=172.86 Aligned_cols=509 Identities=14% Similarity=0.076 Sum_probs=318.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+..+...+.+++...|..+..-+-.+ .+-++.+...++.+++.+.+++...|+.+-..+..++...++.. ..++
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~--~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~i 109 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM--HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMT 109 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH--HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH--HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHH
Confidence 33444455555555555443222222 22344456677788888889999988887777777776554432 2456
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHH
Q 000201 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 739 ~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
..+.+-++|+++.+|..|.++|+.++. ......++|.+.+.+.|+++++| .|+..+..... ........+++.
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~ 183 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPA 183 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGG
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHH
Confidence 677888899999999999999999872 22347788999999999999998 45555543211 111234467788
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc---------------CCCHhHHHHHHHHHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGS 882 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~---------------d~~~~vR~~a~~aL~~ 882 (1866)
+...+.|.++.++..|+.++..++.. ++ +...++..++|.+...+. .+++-.+..+.++++.
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~--~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~ 260 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCER--SP-DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI 260 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCS--HH-HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHh--Ch-HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence 88899999999999999999998762 21 112233344454444433 2467788888888888
Q ss_pred HHhhcCC--CChhhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHH
Q 000201 883 LIRGMGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 958 (1866)
Q Consensus 883 l~~~~g~--~~~~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~ 958 (1866)
+...-.+ +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.++++++|..++..++
T Consensus 261 l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 261 LGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp HTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 7753111 12223444443322111 122345555555544211 11122345566777788889999999999999
Q ss_pred HhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHH
Q 000201 959 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1038 (1866)
Q Consensus 959 ~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ 1038 (1866)
.++...+..|.+|.. .++.++.|++..||..+++.+..+++ ...++.+++.+...+.+.+..+|..++..++.
T Consensus 339 ~i~~~~p~~~~~~~~----~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 339 KTVQTDHNAVQRHRS----TIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHHHGGGHH----HHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHH----HHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999887776666654 46677889999999998887776654 33456677777777777788899999999999
Q ss_pred HHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHH
Q 000201 1039 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1118 (1866)
Q Consensus 1039 ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~ 1118 (1866)
+..+.++ ..+.+ ++.+...+.+....++..++..+..++...|.....
T Consensus 412 la~k~~~----------------~~~~~----------------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~ 459 (618)
T 1w63_A 412 AAEKYAP----------------SKRWH----------------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY 459 (618)
T ss_dssp HHHSSCC----------------CHHHH----------------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH
T ss_pred HHHHhCc----------------cHHHH----------------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH
Confidence 8654321 11111 222222222222334555666777777766754444
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc---------ccc-chHHHHhcccC--CCCccchhhHHHHHHH
Q 000201 1119 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VLP-SIIPILSRGLK--DPSASRRQGVCIGLSE 1186 (1866)
Q Consensus 1119 ~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~---------~l~-~llp~L~~~L~--d~~~~vr~~a~~~L~~ 1186 (1866)
.++.+...+.... ........+++++|+....+... +.| .+++.+...++ ..++.+|..++.++..
T Consensus 460 ~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~K 537 (618)
T 1w63_A 460 TVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMK 537 (618)
T ss_dssp HHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5555555543321 23344456899999998765321 112 23444444443 4577889999988888
Q ss_pred HHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000201 1187 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1187 li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~ 1230 (1866)
+....+. ..+.+...+.....+.+.+||+.|...+..+.
T Consensus 538 l~~~~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 538 LSTRFTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHTTCSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCcc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 7654431 12444455556677899999999987665543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-10 Score=152.70 Aligned_cols=585 Identities=10% Similarity=0.056 Sum_probs=345.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCCC----ChHHHHH
Q 000201 380 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIMT 455 (1866)
Q Consensus 380 ~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~----~~~~~~~ 455 (1866)
++..|+.|.+.+..+- ..|+.+.....-+. .+. . .+.++|..++..|+.....++++ +...+..
T Consensus 21 d~~~r~~A~~~L~~~q-~sp~aw~~~~~iL~--------~~~-~--~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~ 88 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLR-SSSTGWKICHEIFS--------EKT-K--YKPSTRLICLQTLSEKVREWNNESNLLELQMIRD 88 (980)
T ss_dssp CHHHHHHHHHHHHHHH-HSTTHHHHHHHHTT--------CTT-T--SCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-cChhHHHHHHHHHh--------CCC-C--CCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence 7889999888887765 45777644333331 110 0 13589999999999887777887 6666656
Q ss_pred HHHhhhc----CCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC
Q 000201 456 FLISRAL----ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 531 (1866)
Q Consensus 456 fli~~~l----~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~ 531 (1866)
+++.... .+...-||.++..+...+.....++.|+.+++-+-..+..... ...-......+..|...+...
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~-----~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ-----SEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh-----hHHHHHHHHHHHHhHHHHHhc
Confidence 6554221 1346789999999888887777778898888866666543111 011122233333333332211
Q ss_pred C--------c------------chHHHHHHHHHhcC----CCcHHHHHHHHhhhhhhhHhhhhh---hHHHHHHHHHHHH
Q 000201 532 D--------P------------KVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDE---APTLVSRLLDQLM 584 (1866)
Q Consensus 532 ~--------~------------~~~~l~~~l~~~l~----~~~~~v~~~~~~~l~~lv~~~~~~---~~~~l~~ll~~L~ 584 (1866)
. . .++.+++.....|. ..++.+...+.+|+...+.-..-. ...+++.++..+
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L- 242 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL- 242 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT-
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc-
Confidence 0 0 02223444444442 256678888888887766533311 245666666444
Q ss_pred cCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHH--HHHH----hCCCcHHHHHHHHHHHHHHHHHhCc---------
Q 000201 585 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLGR--------- 649 (1866)
Q Consensus 585 ~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L--~~~i----~~~~~~~~r~~al~al~~L~~~l~~--------- 649 (1866)
. +...|..|+.+|..++..... .-....++..+ ...+ .+..|...+++....+..+++.+-.
T Consensus 243 ~--~~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~ 319 (980)
T 3ibv_A 243 Q--IEELRCAACETMTEIVNKKMK-PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELS 319 (980)
T ss_dssp T--SHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--C
T ss_pred C--ChHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 2 357899999999999875321 11111223222 1112 1134555555444444444332110
Q ss_pred -----CchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---H-----hh----HHhHHHHHHhhcC---CCCh
Q 000201 650 -----LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QG----VKLVLPSLLKGLE---DKAW 709 (1866)
Q Consensus 650 -----~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~---~-----~~----v~~llp~L~~~L~---~~~w 709 (1866)
...+.+..++|.++.++++++.+|-..+...+..+...+. . .. +..+++.++..+. +.+|
T Consensus 320 ~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~ 399 (980)
T 3ibv_A 320 PELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEW 399 (980)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 0125677899999999999999998888776666554321 1 11 2445555555553 2233
Q ss_pred -------------hhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhcc---CCChHHHHHHHHHHHHHHhhccchhH
Q 000201 710 -------------RTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPEI 772 (1866)
Q Consensus 710 -------------~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~i 772 (1866)
..|+....++..++--.++....++- .+.+.+.+.+. ..+...+++|..+|+.+++.+++...
T Consensus 400 ~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~ 479 (980)
T 3ibv_A 400 DDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA 479 (980)
T ss_dssp CCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence 23444444444444444554433111 23333334442 34577889999999999987764211
Q ss_pred HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhhcCCC
Q 000201 773 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTEP 847 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~-----d~~~~vr~~a~~~l~~l~~~l~~~ 847 (1866)
. . ....+.++.+++.+.+.++ +..+.+|..++.+++..++.+...
T Consensus 480 ~-----------------------------~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 480 F-----------------------------F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp T-----------------------------B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC
T ss_pred c-----------------------------c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0 0001123334455544443 567899999999999999877542
Q ss_pred cchhhhHhhhhHHHHH--HhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccC----C-----------
Q 000201 848 KDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N----------- 907 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~--~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~----~----------- 907 (1866)
..|++.+++.+.. .+.++++.||..|+.++..+++..... +.+.++..+...+... .
T Consensus 530 ---~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 530 ---SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp ---CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred ---chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 2578888888888 888899999999999999999988764 5555666555444411 1
Q ss_pred -----CHHHHHHHHHHHHHHHHHhCh--h----HHHHHHHHHHHHhc----cC----ChhHH-hHHHHHHHHhhhhhchh
Q 000201 908 -----SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 908 -----~~~~R~~a~~~L~~l~~~~g~--~----~l~~ll~~l~~~l~----~~----~~~vR-~~al~~l~~L~~~~g~~ 967 (1866)
....+....+++|.++...+. + +++.+++.+++.+. .. +...+ ...+.+++.++..+...
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 012466788999999987663 2 55666666554432 21 11111 13466677888766421
Q ss_pred ------hHhHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhc
Q 000201 968 ------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019 (1866)
Q Consensus 968 ------f~~~l~~il~~ll~~l~--d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~ 1019 (1866)
+...+.++++.++..+. ..+..||+++..++..++..++.. +..++|.+..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~ 745 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLIS 745 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHH
Confidence 44566777777777665 467899999999999999887665 3334444433
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-12 Score=168.43 Aligned_cols=456 Identities=12% Similarity=0.068 Sum_probs=301.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-h-hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-S-LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~-l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
++.+.. ++.++++.+|..|+..|..+....... . +...+.++.|.+.+.+..++..+..+..++..++.... ...
T Consensus 19 i~~Lv~-lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--~~~ 95 (529)
T 1jdh_A 19 IPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLL 95 (529)
T ss_dssp HHHHHH-HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--HHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--hHH
Confidence 444443 345667788888888888887643211 1 11225677888877665577888888888888764321 111
Q ss_pred cH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 654 YV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 654 ~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
.+ ...+|.+...+.++++.++..+.+++..++..-... .+ ...+|.+++.+.+++|+++..++.+|..++...+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 12 258899999999999999999999999998753321 22 5689999999999999999999999999987654
Q ss_pred hhHHh-hhcchhHHHhhhccCCCh-HHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhcc
Q 000201 728 QQLSQ-CLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 728 ~~~~~-~l~~iv~~l~~~L~D~~~-~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~ 801 (1866)
+.-.. .-...++.++.++.+.++ .++.+++.+|..++..-.+. .+ ...+|.|.+.+.+++..++ .++..+....
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 33111 112567788888876654 45667888888887532211 12 4678999999988877665 4555555422
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcC--CCHhHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAAR 878 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d--~~~~vR~~a~~ 878 (1866)
.... .......++|.+.+.+.+.++++|..++.++++++.. .+...... -...++.+.+.+.+ .++.+|..++.
T Consensus 256 ~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 256 DAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp TTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCh-hhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 1111 1123457899999999999999999999999999762 21111111 12356777777764 34899999999
Q ss_pred HHHHHHhhcCCC-----C--hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCChh
Q 000201 879 AIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRAS 948 (1866)
Q Consensus 879 aL~~l~~~~g~~-----~--~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~~~ 948 (1866)
+|+.++...++. . -...+|.|...+.++.+..+|..++..++.++..-... .+ ..++|.+++.+.+.++.
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 999997543321 0 12467888888887666568889999998887532111 11 35678888877776666
Q ss_pred HHhHHHH----------------------HHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 000201 949 VRDGYLT----------------------LFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH 1004 (1866)
Q Consensus 949 vR~~al~----------------------~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~ 1004 (1866)
+|..+.+ ++..++..... ...+ ...++.+...+.+++++++..+..++..+...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~--~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH--HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 6664443 44444432111 1111 24678899999999999999999888776532
Q ss_pred hc-ccch--hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1005 YA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1005 ~~-~~~i--~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
-. ...+ ...++.+...+.+++..+|..+...+..+
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 00 0011 12457777778888999998888777653
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-11 Score=159.91 Aligned_cols=474 Identities=12% Similarity=0.073 Sum_probs=301.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHH
Q 000201 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 697 (1866)
Q Consensus 618 ~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ll 697 (1866)
..+.+++.+++ ...|..+..++..+ +.. -......++..+.+-+.|+++.+|-.|..++..+. .++-.+.++
T Consensus 73 ~~vik~~~s~~-~~~Krl~Yl~~~~~---~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~ 144 (618)
T 1w63_A 73 LECLKLIASQK-FTDKRIGYLGAMLL---LDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLA 144 (618)
T ss_dssp HHHHHHHHSSS-HHHHHHHHHHHHHH---CCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHcCCc-hHHHHHHHHHHHHH---hCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHH
Confidence 33445556544 44444443333333 222 12234567778888899999999999999998885 345558889
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhHHhH
Q 000201 698 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASL 775 (1866)
Q Consensus 698 p~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~l 775 (1866)
|.+...+.++++.+|+.|+.+++.+....|+.+ +.+++.+..++.|.++.|+.+|+.+|..++..-.+ ..+..+
T Consensus 145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999999999999888654 36777788899999999999999999999854221 134566
Q ss_pred HHHHHHhhCC---------------CChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhc------CCCHHHHHHH
Q 000201 776 VPTLLMGLTD---------------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKA 833 (1866)
Q Consensus 776 v~~L~~~l~d---------------~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~------d~~~~vr~~a 833 (1866)
+|.+.+.+.+ +++..+ ..++.+..... .+......+.+.+.+.+. +.+..+...+
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR---NDDDSSEAMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT---TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 7766655432 233333 23333332111 111112333444444332 2345777777
Q ss_pred HHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHH
Q 000201 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 913 (1866)
Q Consensus 834 ~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~ 913 (1866)
+.++..+.. . .......++.+..++.++++.+|..|..+|+.++...+ +.+....+.++..+.++ +..+|.
T Consensus 298 ~~~i~~l~~---~----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~~~~~~~~~i~~~l~d~-d~~Ir~ 368 (618)
T 1w63_A 298 VLTIMDIKS---E----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-NAVQRHRSTIVDCLKDL-DVSIKR 368 (618)
T ss_dssp HHHHHHSCC---C----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-HHHGGGHHHHHHGGGSS-CHHHHH
T ss_pred HHHHHhcCC---C----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHccCC-ChhHHH
Confidence 777766422 1 11233467778888898999999999999999998533 33455566777777654 456899
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHH
Q 000201 914 GAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 993 (1866)
Q Consensus 914 ~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~ 993 (1866)
.++..+..++.. +.++.+++.+...+.+.+.++|..++..++.++..++..+..|++.++ +.+.+....++..
T Consensus 369 ~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll----~lL~~~~~~v~~~ 441 (618)
T 1w63_A 369 RAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM----RVLTTAGSYVRDD 441 (618)
T ss_dssp HHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH----HHHHHTGGGSCSS
T ss_pred HHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH----HHHHhccchhHHH
Confidence 999888776543 335677888888888889999999999999999988777766765554 4444444455555
Q ss_pred HHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCC---cchHHHH
Q 000201 994 ALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG---ASTEAHG 1067 (1866)
Q Consensus 994 a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~---~~~e~~~ 1067 (1866)
+...+..++...+.. .+..+...+.+.. ........+++++|+....+.+. ..++++ .....
T Consensus 442 ~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~--------~~~~~~~~~~~~~~-- 509 (618)
T 1w63_A 442 AVPNLIQLITNSVEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSG--------QCEEEEPIQVTEDE-- 509 (618)
T ss_dssp HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTC--------CCSSSCCCCCCHHH--
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhccc--------ccccccccCCCHHH--
Confidence 666666776654322 2223333333221 23444557899999986554321 001100 00100
Q ss_pred HHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 1068 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1147 (1866)
Q Consensus 1068 ~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~ 1147 (1866)
+. +++..+... ...+..+|..++.++..+....|.. .+.+...+-.+..+.+.++|.-|...+.
T Consensus 510 --~~---------~~l~~~l~~-~~~~~~vr~~~lta~~Kl~~~~~~~----~~~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 510 --VL---------DILESVLIS-NMSTSVTRGYALTAIMKLSTRFTCT----VNRIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp --HH---------HHHHHHHHS-TTCCHHHHHHHHHHHHHHHTTCSSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HH---------HHHHHHHhc-cCCCHHHHHHHHHHHHHHHHhCcch----HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 01 122222111 1567899999999998888777642 2333333444566788899999888765
Q ss_pred HHH
Q 000201 1148 ELV 1150 (1866)
Q Consensus 1148 ~lv 1150 (1866)
-+.
T Consensus 574 ll~ 576 (618)
T 1w63_A 574 LFK 576 (618)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-12 Score=163.49 Aligned_cols=461 Identities=12% Similarity=0.061 Sum_probs=305.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh--h---hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC-cch
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 610 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~--~---~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g-~~~ 610 (1866)
..++.++..|.++++.++..++.++..+...... . ....++.++..|..++++..|+.|+..|..+..... ...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 4678888888889999999999988776643321 1 235677777777666688999999999999876422 122
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+...+.++.|.+.+.+. ++..+..|+.++..++...+..-.... ...+|.+...+.+++..++..+..++..++..-+
T Consensus 97 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 22346888998888775 467888899999999886443212222 4689999999999999999999999988765211
Q ss_pred Hh--h-H-HhHHHHHHhhcCCCC-hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 690 AQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 690 ~~--~-v-~~llp~L~~~L~~~~-w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
.. . . ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 1 1 235677777776544 45666788888888864321111111368899999999999999999999999998
Q ss_pred hhccch-hHHhHHHHHHHhhCCCChhHH-HHHHHHHhcccccc--CCcchhhhHHHHHHHhhcC--CCHHHHHHHHHHHH
Q 000201 765 SVIKNP-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRE--RSAETKKKAAQIVG 838 (1866)
Q Consensus 765 ~~i~~~-~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~l~p~L~~~l~d--~~~~vr~~a~~~l~ 838 (1866)
...... ....++|.|.+.+.+++..++ .++..+........ ...-.-...+|.+.+.+.+ .+++++..++.+++
T Consensus 256 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 764332 236789999999998888877 45555554322110 0000112357777777764 34899999999999
Q ss_pred HHhhhcCCCcchh-h-hHhhhhHHHHHHhcCCC-HhHHHHHHHHHHHHHhhcCCC-C--hhhHHHHHHHhcccCCCHHHH
Q 000201 839 NMCSLVTEPKDMI-P-YIGLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE-N--FPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 839 ~l~~~l~~~~~l~-~-~~~~ll~~L~~~l~d~~-~~vR~~a~~aL~~l~~~~g~~-~--~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+++......+... . .....+|.|..++.++. +.+|..++.+++.++..-... . -..++|.|.+.+.+. +..+|
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 414 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA-HQDTQ 414 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH-HHHHC
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHH-hHHHH
Confidence 9976311100011 1 11246788899999876 699999999999988532111 0 124677777766542 23344
Q ss_pred HHHHHHH----------------------HHHHHHhCh-hHH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 913 SGAAQGL----------------------SEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 913 ~~a~~~L----------------------~~l~~~~g~-~~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
..+++++ ..++..... ..+ ...++.++..+.++++.++..+..++..++.. ..
T Consensus 415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~ 492 (529)
T 1jdh_A 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE 492 (529)
T ss_dssp -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH
T ss_pred HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH
Confidence 4444333 322221100 011 24568888999999999999999999988743 22
Q ss_pred hHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 968 FQNYL--QQVLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 968 f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
....+ ...++.+...+.+++++||..+..++..+
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 22222 24678889999999999999998887654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-12 Score=160.90 Aligned_cols=379 Identities=14% Similarity=0.119 Sum_probs=269.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHH
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
-++-+.+.+...+..++..|..+++.+.+.-.. +.+ ..++|.|++.|.+ ++..++..|+.+|++++.+.++...
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 356677788889999999999999988753221 222 4579999999975 4588999999999999988776543
Q ss_pred hhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChh------HHHHHHHHHhc
Q 000201 732 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 800 (1866)
Q Consensus 732 ~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~------vr~al~~L~~~ 800 (1866)
... ...+|.|+.+|.++++.||..|+++|+.++..-.+ ..+ ...++.|...+..++.. .+.+...+...
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 322 26899999999999999999999999999853221 111 35678888888776532 23444444432
Q ss_pred ccc--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHH
Q 000201 801 TFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAA 877 (1866)
Q Consensus 801 ~~~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~ 877 (1866)
... ..........++|.|.+.+.+.+.+++..++.++.+++.. ....... ....+++.|..++.++++.++..++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 211 1112223467899999999999999999999999999862 2111111 1235788899999999999999999
Q ss_pred HHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-HHHHHHHHHHHhccCChhH
Q 000201 878 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASV 949 (1866)
Q Consensus 878 ~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l~~ll~~l~~~l~~~~~~v 949 (1866)
.+|+.++...... .-...++.|...+.+ .+..+|..++.+|+.++...... . -..++|.++..+.+.++.+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9999987532211 011344555555554 44568999999999887533221 1 1357899999999999999
Q ss_pred HhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----c----hhc--hHHhH
Q 000201 950 RDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LPL--LLPAV 1017 (1866)
Q Consensus 950 R~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~----i~~--llp~l 1017 (1866)
|..+..++..++.....+...|+ ..+++++...+...+++++..+++++..+....... . +.. .+..+
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 99999999999876554433344 347899999999999999999999998887633211 0 111 24556
Q ss_pred hcccCCCchHHHHHHHHHHHHH
Q 000201 1018 EDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1018 ~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+....++|..++..+..++...
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 6666778888988888887765
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=158.93 Aligned_cols=382 Identities=14% Similarity=0.118 Sum_probs=272.5
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
+...++.+...+..+++.++..|..++..+.+.-.. +.+ ..++|.|++.|. ++++..+..|+.+|+.++.+.+.
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 334567778888889999999998888887653221 222 458999999996 45689999999999999988766
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChh------HHHHHHHH
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDIL 797 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~------vr~al~~L 797 (1866)
..... -...+|.|+.++.++++.||..|+++|+.++..-.+ ..+ ...++.|+..+.+++.. .+.+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 53222 236899999999999999999999999999853211 111 35688889988876532 23344444
Q ss_pred Hhcccc--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHH
Q 000201 798 LQTTFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRS 874 (1866)
Q Consensus 798 ~~~~~~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~ 874 (1866)
...... ..........++|.|.+.+.+.+.+++..++.++.+++.. ....... ....+++.|..++.++++.++.
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 432111 1112223467899999999999999999999999999862 2111111 1235788999999999999999
Q ss_pred HHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCC
Q 000201 875 VAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQR 946 (1866)
Q Consensus 875 ~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~ 946 (1866)
.++.+|+.++...... .-...++.|...+.+. +..+|..++.+|+.++...... .. ..++|.++..+.+.+
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 9999999997532211 0123566676666654 4568999999999987643221 11 357899999999999
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----c----hhc--hH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LPL--LL 1014 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~----i~~--ll 1014 (1866)
+.+|..+..++..++.....+...++ ..++++++..+...+++++..++.++..+....... . +.. .+
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 99999999999999876544433344 247899999999999999999999998887533211 0 111 34
Q ss_pred HhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1015 PAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1015 p~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
..++....++|..++..+..++...
T Consensus 471 ~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 471 DKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5566666788899999888888765
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=153.88 Aligned_cols=199 Identities=20% Similarity=0.286 Sum_probs=162.2
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccc---
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~--- 769 (1866)
..+-|.+.+.+.+++|+.|++|+..|..++++++......+..+++.+...+. |+++.||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445688889999999999999999999998765444556788999999995 99999999999999999988775
Q ss_pred hhHHhHHHHHHHhhCCCChhHHHHH-HHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc
Q 000201 770 PEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~d~~~~vr~al-~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
+++..++|.+++.+.|++..+|.+. ..+....- ......++|.+...+++.+|.+|..++.+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYA-----STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-----TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 5678899999999999999898533 33322111 11356789999999999999999999999999876443222
Q ss_pred chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 000201 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 897 (1866)
Q Consensus 849 ~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~ 897 (1866)
...+|++.++|.+...+.|++++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999764444443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=156.82 Aligned_cols=387 Identities=14% Similarity=0.119 Sum_probs=267.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..+ .+++...+..|.+.+-.++..- +.+.+...+++|.|.+.+...+++..+..|..+++.|+.+-...-.
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455555 4566778888888887776422 2234445678999999998777788888899999999865432222
Q ss_pred hcHH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCCh-----hhHHHHHHHHHHH
Q 000201 653 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w-----~~r~~a~~~L~~l 722 (1866)
..+. ..+|.+..++.+++..||+.|.++|..++..-+.. .+ ...++.++..+.+.+. .....++..|..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2232 47999999999999999999999999998643321 11 3467888888876543 3466788888888
Q ss_pred HhhChh-hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc
Q 000201 723 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 723 ~~~~~~-~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~ 801 (1866)
+.+... ........++|.|.+++.+.+++|+..|+++|..++..-. +... . +
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~~---~------------------i---- 270 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---M------------------V---- 270 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHHH---H------------------H----
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhHH---H------------------H----
Confidence 876422 2222345788999999999999999999999999875321 1100 0 0
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
....++|.|...+.+.+..++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|
T Consensus 271 --------~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 271 --------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp --------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred --------HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 0112466677777788888999999999998762 2111111 1124566777888899999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHh
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~ 951 (1866)
+.++...... .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+.+.+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997632211 11257888888887654 56899999999998876555433 34678899999999999999
Q ss_pred HHHHHHHHhhhhhc-----hhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 952 GYLTLFKYLPRSLG-----VQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 952 ~al~~l~~L~~~~g-----~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++.++..+..... ..+..++.. .+..+-....+++++|+..|...+..+
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999988875432 122223322 355566666789999988877665443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-11 Score=155.99 Aligned_cols=478 Identities=13% Similarity=0.105 Sum_probs=299.7
Q ss_pred HhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 690 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 690 ~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
++.+...++.+++.+.+++...|+.+-..+..+++..++.+ --++..+.+-++|+++.+|..|..+|+.+. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~ 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG----S 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----C
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----C
Confidence 44556678888899999999999999999988888776553 245667778889999999999999999885 3
Q ss_pred hh-HHhHHHHHHHhh--CCCChhHHH-HHHHHHhccccccCCcchh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 770 PE-IASLVPTLLMGL--TDPNDHTKY-SLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 770 ~~-i~~lv~~L~~~l--~d~~~~vr~-al~~L~~~~~~~~~~~~~l--~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
++ .+.++|.+.+.+ .|+++++|. |+-.+...-- .+.... ..+++.+.+.+.|+++.|+..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 44 478889999999 999999983 4444433110 111122 25788899999999999999999999999873
Q ss_pred cCCCcchhhhHhhhhHHHHHHhcCC-------------CHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCC
Q 000201 844 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 907 (1866)
Q Consensus 844 l~~~~~l~~~~~~ll~~L~~~l~d~-------------~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~ 907 (1866)
++..+.++.+.++..|.+++.++ ++-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 33445567777777777766432 4556666666666554311111 12234444443322111
Q ss_pred ---C-------HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 908 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 908 ---~-------~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
. ..+.-.++.++..+. ...+.....+..+...+.++++++|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 112223333322221 12234556667777778888999999999999999877652 123444455
Q ss_pred HHHhhcc-CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000201 978 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1056 (1866)
Q Consensus 978 ~ll~~l~-d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ 1056 (1866)
.++.++. |++..||..+++.+..+++ +..++.++.++...+.+.+..+|..++..++.+..+.+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 6677777 8999999888877666553 3445667777777776677788888888888876554311
Q ss_pred CCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-
Q 000201 1057 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1135 (1866)
Q Consensus 1057 ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~- 1135 (1866)
.+.+...+.+.+.. ....+...++..+..++.+.|.. +. ..+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll~~----------------~~~~v~~ev~~~l~~ii~~~~~~-~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIRI----------------AGDYVSEEVWYRVIQIVINRDDV-QG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHHH----------------HGGGSCSHHHHHHHHHHGGGCSC-HH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHHh----------------hcccchHHHHHHHHHHHhCChhH-HH---HHHHHHHHHHcCccc
Confidence 11222222222211 11112333444455555444432 11 12333445555543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--ccc-chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhh
Q 000201 1136 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1211 (1866)
Q Consensus 1136 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1211 (1866)
...-..+++++|+....+... ..| .++..+...+...++.+|..++.++..+.... ++ ..+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~----~~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE----VKATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG----GHHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH----HHHHHHHHHHHHh
Confidence 344456678888887665432 222 45666666666778889999988888775443 22 1233444444455
Q ss_pred c--CCcHHHHHHHHHHHHH
Q 000201 1212 C--DSILEVRESAGLAFST 1228 (1866)
Q Consensus 1212 ~--d~~~~vr~~A~~al~~ 1228 (1866)
. |.+.+||+.|...+.-
T Consensus 568 ~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 5 8999999998865443
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-11 Score=154.09 Aligned_cols=387 Identities=14% Similarity=0.119 Sum_probs=266.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..+ .+++...+..|...+-.++..- ..+.+...+++|.|.+.+...+++..+..|+.++..++.+......
T Consensus 78 l~~lv~~l-~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33444444 3455667777777776665421 1233345678999999998777788888899999999865432222
Q ss_pred hcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCCh-----hhHHHHHHHHHHH
Q 000201 653 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w-----~~r~~a~~~L~~l 722 (1866)
..+ ...+|.+..++.+++..||+.|.++|..++..-+.. .+ ...+|.++..|.+.+. .....++..|..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 257999999999999999999999999998643221 11 3468888888876543 3466788888888
Q ss_pred HhhChh-hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc
Q 000201 723 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 723 ~~~~~~-~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~ 801 (1866)
+.+... ........++|.|..++.+.+++|+..|+++|..++..-. .... . +
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~~---~------------------v---- 289 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---M------------------V---- 289 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHH---H------------------H----
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhHH---H------------------H----
Confidence 876432 2223345788999999999999999999999999875321 1100 0 0
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
....++|.|...+.+.++.++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|
T Consensus 290 --------~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 290 --------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp --------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred --------HhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0113466677777788888999999999998762 2111111 1234678888999999999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHh
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~ 951 (1866)
+.++...... .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+.+.+.++++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998632211 11257888888887654 56899999999998876555432 24678899999999999999
Q ss_pred HHHHHHHHhhhhhc-----hhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 952 GYLTLFKYLPRSLG-----VQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 952 ~al~~l~~L~~~~g-----~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++.++..+..... ..+..++.. .+..|-....+++++|+..|.+.+..+
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999988765432 122222222 345555666789999998887665543
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-07 Score=128.17 Aligned_cols=376 Identities=11% Similarity=0.120 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHhc--cccccchHH
Q 000201 1092 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLG--ERVLPSIIP 1163 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~~~-----~~~R~~A~~~L~~lv~~~~--~~~l~~llp 1163 (1866)
..+|..+++++-++++++..... .-.+++|.+++.|+.....+. ..++...+.++|+..+.+. +..++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 46799999999999999865553 345789999999987665431 2234444457776655543 346777788
Q ss_pred HHhcccCCCCccchhhHHHHHHHHHHhhchhh-------HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1164 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1164 ~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~-------l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+.+++.++++.+...||.++..+...|.... ..+|+..++..+.....+-.++-...-.++++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88888889999999999999999888876543 23588888887777777767666666667788887776653
Q ss_pred h-----HhhHHHHHHHhccCCCchhHHHHHHHHHhhcc--cccc------chhhhhhhhcCCccchhHHHHHHHHHHhCC
Q 000201 1237 A-----IDEIVPTLLHALEDDQTSDTALDGLKQILSVR--TTAV------LPHILPKLVHLPLSAFNAHALGALAEVAGP 1303 (1866)
Q Consensus 1237 ~-----~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~--~~~i------lp~Lip~L~~~~~~~~~~~al~~La~~~g~ 1303 (1866)
. ++.+++.+...| .+++... ...+ +..+.+- .+...+++...|.
T Consensus 650 ~~~~~~i~~Lm~~~~~~w-------------~~l~~~~~~~~~~~~d~~~i~~l~~i----------l~~n~~v~~~~g~ 706 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQVW-------------DSIIQQATKNVDILKDPETVKQLGSI----------LKTNVRACKAVGH 706 (1073)
T ss_dssp HHHHHHHHHHTHHHHHHH-------------HHHHHHHHHCGGGGGCHHHHHHHHHH----------HHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHH-------------HHHHHHhhcCchhccChHHHHHHHHH----------HhhhHHHHhhcch
Confidence 2 222333332222 2222100 0000 1111111 1244456667788
Q ss_pred CchhhHhhHHHHHHHhcCC-----------------CCHH------HHHHHHHHHhHhhhccch------hcHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSEL 1354 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~-----------------~~~~------vr~~a~~~l~~l~~~~~~------~~~~~ll~~L 1354 (1866)
.+.+++..+++.+++..+. +.+. +|....+.+...+....+ .-+++++..+
T Consensus 707 ~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~v 786 (1073)
T 3gjx_A 707 PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAV 786 (1073)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHH
Confidence 8999888888876643210 1121 333344444444433221 2245566555
Q ss_pred HhccCCCchhHHHH-HHHHHHHHHhhccchhhhhHHHHHHHHHH----HhC---CCChhHHHHHHHHHHHHHhcCCcchh
Q 000201 1355 LKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQ 1426 (1866)
Q Consensus 1355 ~~~l~~~~~~vR~~-a~~~l~~l~~~~~~~~~~~~~~il~~L~~----ll~---d~~~~v~~~A~~aL~~l~~~~~~~~l 1426 (1866)
+.......+..|.+ .+.++..++...+..+.+.++.++..++. +++ +..++.|..-+.-+.++....+...+
T Consensus 787 l~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~ 866 (1073)
T 3gjx_A 787 LIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL 866 (1073)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 55444444555543 45666677777777778888888888765 354 35677888777777777765543221
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCC-CCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC------h
Q 000201 1427 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS------E 1499 (1866)
Q Consensus 1427 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~-~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~------~ 1499 (1866)
. +| ..+..++..++-++.....++-..+...+-++..... .
T Consensus 867 ~--------------------------------l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~ 914 (1073)
T 3gjx_A 867 A--------------------------------IPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQ 914 (1073)
T ss_dssp T--------------------------------SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c--------------------------------CCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHH
Confidence 1 01 1122233444445555556666666666666654421 1
Q ss_pred hhhhhhhhhhhHHHHHHhcCCCC
Q 000201 1500 QSLKEFVIPITGPLIRIIGDRFP 1522 (1866)
Q Consensus 1500 ~~l~~~v~~i~~~Li~~l~~~~~ 1522 (1866)
.-++.|...++.-++.++.|...
T Consensus 915 ~F~~~~~~~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 915 SFYQTYFCDILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCchH
Confidence 23445556666666777776543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-12 Score=142.85 Aligned_cols=200 Identities=10% Similarity=0.196 Sum_probs=162.6
Q ss_pred HHHhhcCCCChhhHHHHHHHHHH-HHhhChhhH--HhhhcchhHHHhhhc-cCCChHHHHHHHHHHHHHHhhcc-c----
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 769 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~-l~~~~~~~~--~~~l~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~i~-~---- 769 (1866)
.+.+.+.+++|+.|++|+..|+. +++++++.. ...+..++..+.+.+ +|+++.||..|+++++.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667789999999999999999 988776654 445568888999999 89999999999999999998886 2
Q ss_pred hhHHhHHHHHHHhhCCCChhHHH----HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000201 770 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 845 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~d~~~~vr~----al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~ 845 (1866)
++...++|.++..+.|....+++ ++..+... .......+++..+++.+...+++.+|.+|..++.+++.++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 56678999999999999887774 33333331 11111112377899999999999999999999999999998644
Q ss_pred CC-cchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 000201 846 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899 (1866)
Q Consensus 846 ~~-~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L 899 (1866)
.. ..+.+|+ +.++|.+.+++.|.++.||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-08 Score=133.23 Aligned_cols=498 Identities=14% Similarity=0.072 Sum_probs=304.1
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
+...|+.+..-+..+.. .|.+.. .....+.+++.++ +...|..+..++..+++.- .+.+.-++..+.+-+.
T Consensus 51 ~~~~k~~~l~Kli~l~~-~G~d~s---~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-LGHDID---FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCCCC---SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCCCc---hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence 44455555554443322 343321 2344445566664 4566665555554444321 2345566778888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L--~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L 745 (1866)
|+++.+|-.|..++..+. .++-.+.++|.+.+.+ .|.++.+|+.|+.++..+....|+.+.. +.+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHh
Confidence 999999999999888874 3555688999999999 9999999999999999999988765532 37888899999
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHH----HHHHhhCCC-------------ChhHH-HHHHHHHhccccccCC
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVP----TLLMGLTDP-------------NDHTK-YSLDILLQTTFVNTVD 807 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~----~L~~~l~d~-------------~~~vr-~al~~L~~~~~~~~~~ 807 (1866)
+|+++.|+.+|+.++..++..-.. .+..++| .|.+.+.+. ++-.+ ..++.+.. +....+
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~--~~~~~d 273 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--YPPPED 273 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--SSSCSS
T ss_pred CCCCccHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--hCCCCC
Confidence 999999999999999998764321 2233344 343333221 22233 23444332 211112
Q ss_pred cchhhhHHHHHHHhh---cC---------CC--HHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHH
Q 000201 808 APSLALLVPIVHRGL---RE---------RS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 873 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l---~d---------~~--~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR 873 (1866)
......+.+.+.+.+ .+ .+ ..+...++.++..+. . ..++....+..|..++.++++++|
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L~~~~~nir 346 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFLQHRETNLR 346 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHhcCCCcchH
Confidence 122222333332222 11 11 255555555555442 1 234566778888888988999999
Q ss_pred HHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhH
Q 000201 874 SVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 952 (1866)
Q Consensus 874 ~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~ 952 (1866)
..+..++..++...+. +.+....+.++..+..+.+..+|..++..+..++ ..+.++.++..+...+.+.+.+.|..
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~ 423 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREE 423 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999876542 3455566677777773445668888888776654 33467888888888888889999999
Q ss_pred HHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCch--HHHH
Q 000201 953 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQ 1030 (1866)
Q Consensus 953 al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w--~vR~ 1030 (1866)
++..++.++..++..+.-|++.++..+-.. ...+...+...+..++...+.- -...+..+.+.+.++.. .+-.
T Consensus 424 ~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~~~-~~~~~~~l~~~l~~~~~~~~li~ 498 (621)
T 2vgl_A 424 IVLKVAILAEKYAVDYTWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRDDV-QGYAAKTVFEALQAPACHENLVK 498 (621)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGCSC-HHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCChhH-HHHHHHHHHHHHcCccchHHHHH
Confidence 999999999888877777777665554332 2223333444444454433211 11122233333333332 2334
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 000201 1031 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1110 (1866)
Q Consensus 1031 ~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~ 1110 (1866)
.++.++|+....+.+. +.... .+++..++....+.+..||..++.++..+..
T Consensus 499 ~~~wilGEy~~~~~~~------------~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 499 VGGYILGEFGNLIAGD------------PRSSP----------------LIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp HHHHHHHHHTHHHHSS------------TTSCH----------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHhccc------------CCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4557777753322110 00000 1233444444567788999999998888877
Q ss_pred cChhhHHHhHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHH
Q 000201 1111 NTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1111 ~~p~~l~~~l~~l~~~L~~~l~--~~~~~~R~~A~~~L~~l 1149 (1866)
..|.. .+.+...+-.+.. +.+.++|.-|...+.-+
T Consensus 551 ~~p~~----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 551 LFPEV----KATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HCGGG----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HChHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 66642 2223333323344 78899999888765443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-06 Score=114.26 Aligned_cols=337 Identities=16% Similarity=0.133 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc---CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~ 787 (1866)
.|.+|+..||-+-.+..++- +..+.+.|. .+++.+|..|+.+||-+.....++ .+..|...+.+++
T Consensus 374 ~k~sA~aSLGlIh~g~~~~g-------l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~ 442 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLEG-------KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTTH-------HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhccCchHHH-------HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCcc
Confidence 47778888887776654432 222333333 456788888888888887655432 1222222221111
Q ss_pred hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 788 ~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
.. -.+ ....+|..|+-.+|.+.. +..+ +.+++.|...+.
T Consensus 443 ~~--------------------------------~~~~~~~~ir~gAaLGLGla~~--GS~~------eev~e~L~~~L~ 482 (963)
T 4ady_A 443 GT--------------------------------SGDEDVDVLLHGASLGIGLAAM--GSAN------IEVYEALKEVLY 482 (963)
T ss_dssp SC--------------------------------CSCHHHHHHHHHHHHHHHHHST--TCCC------HHHHHHHHHHHH
T ss_pred cc--------------------------------ccccccHHHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHh
Confidence 00 000 013567777777777654 2211 246677777888
Q ss_pred CCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHh-ccC
Q 000201 867 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQ 945 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l-~~~ 945 (1866)
+.+..+|..|+.++|.+.-..|.. +.+..|+..+.++....+|+.++.+||.+. +|.. +..+.+++.+ .+.
T Consensus 483 dd~~~~~~~AalALGli~vGTgn~---~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~---e~~~~li~~L~~~~ 554 (963)
T 4ady_A 483 NDSATSGEAAALGMGLCMLGTGKP---EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQ---ELADDLITKMLASD 554 (963)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCG---GGGHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHhhhhcccCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCCh---HHHHHHHHHHHhCC
Confidence 778888989999999886544432 334444444444445568889988888763 3433 2233444433 357
Q ss_pred ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhc-ccCCC
Q 000201 946 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFND 1024 (1866)
Q Consensus 946 ~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~-~l~d~ 1024 (1866)
++.+|.+++.+++.-..-.|.. ..++.++.. +..|.+++||..|.-++..+.-. ..+ ..|.+.+ ...+.
T Consensus 555 dp~vRygaa~alglAyaGTGn~--~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g-~~e----~v~rlv~~L~~~~ 624 (963)
T 4ady_A 555 ESLLRYGGAFTIALAYAGTGNN--SAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLR-DYT----TVPRIVQLLSKSH 624 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCH--HHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSS-SCS----SHHHHTTTGGGCS
T ss_pred CHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHH---hccCCcHHHHHHHHHHHHhhccC-CHH----HHHHHHHHHHhcC
Confidence 9999999888887655555542 123333332 33578889999998888765322 112 2333333 34567
Q ss_pred chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000201 1025 NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV 1104 (1866)
Q Consensus 1025 ~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~ 1104 (1866)
+|.+|.++...+|.+- .|. ...+++..|.....|.+..||+.|+..
T Consensus 625 d~~VR~gAalALGli~---aGn-------------------------------~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 625 NAHVRCGTAFALGIAC---AGK-------------------------------GLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp CHHHHHHHHHHHHHHT---SSS-------------------------------CCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc---cCC-------------------------------CcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8999999999998751 000 011344444455689999999999999
Q ss_pred HHHHhhcChhhHHHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHH
Q 000201 1105 WKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1105 l~~l~~~~p~~l~~~l~~l~~~L~~~l~~--~~~~~R~~A~~~L~~lv 1150 (1866)
++.+...+.....+.+..+...+.+...+ .+...|..+.-+.|-+-
T Consensus 671 LG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 99998766554334455566666666654 45667777776666553
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=135.16 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=188.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.+...+.|+++.||..|.+++..+.. +..+|.+.+.+.++++.+|..++..|+.+..... .++.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----CEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----THHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----cchHH
Confidence 46778888999999999999999988742 4578888999999999999999999998763211 12345
Q ss_pred hHHHh-hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHH
Q 000201 738 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 738 v~~l~-~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
++.+. .+++|+++.||..++++|+.++.... .....+++.|...+.|++..+| .++..+..... ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------HHHH
Confidence 66655 36789999999999999999985331 2235678999999999999998 56666654211 2367
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhH
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l 895 (1866)
|.|...+++.++.+|..++..++.+.. . .+..++.+...+.|+++.||..++.+|+.+.. +..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------KRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------Hhh
Confidence 888899999999999999999988742 1 13577888889999999999999999988652 456
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-CChhHHhHHHHHH
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 957 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-~~~~vR~~al~~l 957 (1866)
++.|...+.++. +|..++.+|+.+. . +..+|.+.+.+.+ +++.++..++..+
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i~----~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhcC----c---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 777777776533 7888888887753 2 3566777777654 4555555444443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=134.34 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=187.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
.++.|.+.+.+ .++..|..|+.+++.+.. ...+|.+...+.|+++.||..+.+++..+.. .+..+..
T Consensus 24 ~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDD-HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHc-CCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 35666777765 467888888888776641 3577888899999999999999999987742 2233455
Q ss_pred HHHHHHh-hcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~-~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+++.+.. .+++++|.+|..++.+|+.+....+.. .+.+++.+...++|+++.||..|+++|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 6666663 467899999999999999988655422 24678888899999999999999999998764 23
Q ss_pred HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 775 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
.+|.|.+.+.|++..+| .++..+..... .-..++|.+...++|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcc-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 67888899999999888 46666654211 124578899999999999999999999998752
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
+..++.|...+.|++ ||..++.+|+.+.. +..+|.|.+.+.+..+...+..++..+
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 236777778888754 89999999988643 367888888777655444555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-06 Score=106.75 Aligned_cols=262 Identities=15% Similarity=0.165 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-ccccchHHHHhcccCCCC
Q 000201 1095 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1173 (1866)
Q Consensus 1095 ~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~ 1173 (1866)
..+|..|+-.||-+..++.+ .+.++ .|...+.+.+...|..|+.+||-+.-..+. .+...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--eev~e----~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--IEVYE----ALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--HHHHH----HHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHH----HHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888899899887655443 12333 344445566677888888899877544333 24455555544 3456
Q ss_pred ccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCC
Q 000201 1174 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253 (1866)
Q Consensus 1174 ~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 1253 (1866)
..+|+.++.+|+.+. .+.. +..+.++.. ...+.++-+|..++.+++.-+-..|.. ..+..|+..+.++.
T Consensus 522 e~vrR~aalgLGll~--~g~~---e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d~ 590 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ---ELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSDS 590 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG---GGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhh--CCCh---HHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccCC
Confidence 678899999998653 2221 122333333 234788999999988887655444431 22333333322111
Q ss_pred chhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHh-CCCchhhHhhHHHHHHHhc-CCCCHHHHHHH
Q 000201 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSLA 1331 (1866)
Q Consensus 1254 ~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l~~il~~L~~~l-~~~~~~vr~~a 1331 (1866)
. ...+..|+-+|+.+. |. +...+.++..+ .+.++.+|..+
T Consensus 591 ~--------------------------------d~VRraAViaLGlI~~g~------~e~v~rlv~~L~~~~d~~VR~gA 632 (963)
T 4ady_A 591 N--------------------------------DDVRRAAVIALGFVLLRD------YTTVPRIVQLLSKSHNAHVRCGT 632 (963)
T ss_dssp C--------------------------------HHHHHHHHHHHHHHTSSS------CSSHHHHTTTGGGCSCHHHHHHH
T ss_pred c--------------------------------HHHHHHHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 011223444454432 33 13455555544 56789999999
Q ss_pred HHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHH
Q 000201 1332 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAA 1409 (1866)
Q Consensus 1332 ~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~ 1409 (1866)
..+++.+...-+ ...++..|.....|.+..+|++|+.++|.+.........+.+..+++.|.....| .+...+-.
T Consensus 633 alALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 633 AFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp HHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 999998764333 2456666666678999999999999999998777666667888999998888866 45566666
Q ss_pred HHHHHHHH
Q 000201 1410 AWEALSRV 1417 (1866)
Q Consensus 1410 A~~aL~~l 1417 (1866)
+.-|.+-+
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-09 Score=121.01 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=154.5
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
+.++-....+.++..+.|+++.||..|..++..+.. ...+|.+++.+.+++|.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 445556788899999999999999999999987643 3567888899999999999999999998753
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcc
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 809 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~ 809 (1866)
+..++.+...++|+++.||..|+++|+.++. + ..++.|.+.+.|++..+| .++..+....
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 3567888899999999999999999998863 2 466778888899998888 4666665421
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
....+|.+...+++.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+-
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13467888999999999999999999998842 346778888888999999999999988754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=144.03 Aligned_cols=288 Identities=16% Similarity=0.280 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc--hhhHhHHHHHHHHHHhhccCC
Q 000201 911 ERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLADE 986 (1866)
Q Consensus 911 ~R~~a~~~L~~l~~~~g~~--~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g--~~f~~~l~~il~~ll~~l~d~ 986 (1866)
.+..++..++.+...-+.. .-..++..+.+.+.+.... ++++.++..++...+ ..++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 4566777777766533222 1125666677766665444 999999999998775 478999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHH
Q 000201 987 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~-~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~ 1065 (1866)
...||.+|..|...++..++..++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999988655 69999999999999864321
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1144 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~ 1144 (1866)
++++ ..+.++++.+..+..|...+|+.+|..++..++.... ..+.+++|.+ ++++.+++. +- .+..
T Consensus 167 ------~~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~----~~~~~~p~~-~~-~~~~ 233 (986)
T 2iw3_A 167 ------DQVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL----IQCIADPTE-VP-ETVH 233 (986)
T ss_dssp ------HHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH----HHHHHCTTH-HH-HHHH
T ss_pred ------HHHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH----HHHhcChhh-hH-HHHH
Confidence 1121 2445788888889999999999999999998886332 4455555554 455666644 11 1122
Q ss_pred HHH--HHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh-chhhHHhhHhhHHHHHHHhhc-CCcHHHHH
Q 000201 1145 ALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALC-DSILEVRE 1220 (1866)
Q Consensus 1145 ~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~-d~~~~vr~ 1220 (1866)
.|+ .++..+..+.+.-+.|.|.++|.++...+++.++..+.++..-. .|....+|++.++|.+.+... -.+|++|+
T Consensus 234 ~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 222 12223334567788999999999988888888888777776544 366788999999999998665 56999999
Q ss_pred HHHHHHHHHHHHhc
Q 000201 1221 SAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g 1234 (1866)
.|.+|+..+.+..+
T Consensus 314 ~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 314 VTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876544
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-08 Score=137.90 Aligned_cols=538 Identities=12% Similarity=0.113 Sum_probs=297.0
Q ss_pred hhHHHHHhhhcCC--ChhHHHHHHhhhccCccccCCCCCcccc-ccchheeeecCCchhHHHHH--------HHHhhhcC
Q 000201 294 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIE-VSTSLWIAVHDPEKSVAEAA--------EDIWDRYG 362 (1866)
Q Consensus 294 ~~~~~~l~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~ 362 (1866)
.++.++|..+++| +..+|++|++.|+++. .++ .... +...+. ..+.+..+|..| ...|...+
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~---~~p--~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFK---EKC--PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH---HHC--TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHH---hCc--hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 4578889999998 6678999999998864 111 0111 112221 233345555433 35687755
Q ss_pred CccCCCh-hhhhhhcCC-------CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000201 363 YDFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 433 (1866)
Q Consensus 363 ~~~~~~~-~~ll~~l~~-------~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 433 (1866)
.+....+ ..+++.+.+ +...+|.+.+++++.++. .||+.|++.+..+.+.... +...+.+
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~ 152 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTEL 152 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHH
Confidence 4444455 566665542 468999999999999864 4677677777777654421 1234677
Q ss_pred HHHHHHHhhhh-cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCC---------
Q 000201 434 IALALHSAADV-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--------- 503 (1866)
Q Consensus 434 ~~~~l~~~~~~-~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~--------- 503 (1866)
...+|..+++. +..+. ... .|..-+. ..+. ++.+.+++.+...+...
T Consensus 153 ~L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQT---------------LPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp HHHHHHHHHHHHHTSCC---------------SCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccccc---------------hHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77778877653 21111 111 1111110 0011 11233333333333210
Q ss_pred --CCC--hhhhhhHHHHHHHHHHHHhhhhccCC--cchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh--hh----
Q 000201 504 --ASD--EEKYDLVREGVVIFTGALAKHLAKDD--PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ--DE---- 571 (1866)
Q Consensus 504 --~~~--~~~~~~vr~~av~~l~~i~~~l~~~~--~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~--~~---- 571 (1866)
... .+....++..++.++.......+... ..-..+++.+...+.+ ++++..+++||..++.... +.
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~l 287 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPL 287 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGG
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHH
Confidence 000 01123466667766654443322110 0001356666665554 4689999999888775331 11
Q ss_pred ---h-HHHHHHHHHHHH-------cCCChhHHHHHHHHHHHHHhhhCc---------chhhhcchHHHHHHHHhCCCcHH
Q 000201 572 ---A-PTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVVKGFGI---------SSLKKYGIAATLREGLADRNSAK 631 (1866)
Q Consensus 572 ---~-~~~l~~ll~~L~-------~~~~~~~R~~A~~~L~~l~~~~g~---------~~l~~~~ii~~L~~~i~~~~~~~ 631 (1866)
+ ...+..++..+. .++++..++.-+..+..+...+-. ..-....+++.+.....+. +..
T Consensus 288 i~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~-~~~ 366 (1204)
T 3a6p_A 288 MVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP-SQF 366 (1204)
T ss_dssp GGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS-CHH
T ss_pred HHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc-cHH
Confidence 1 122344555543 111234455544444443321100 0001125677777777664 334
Q ss_pred HHHHHHHHHHHHHHHh----CcCchhcHHhHHHHH---HHHcCCCC------------------------HHHHHHHHHH
Q 000201 632 RREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREAAECA 680 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l----~~~~~p~v~~llp~l---l~~~~D~~------------------------~~VR~~a~~a 680 (1866)
.-..++..+..+.+.. ...+.+++..+++.+ +..+.-+. ...|+...+.
T Consensus 367 vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~ 446 (1204)
T 3a6p_A 367 LRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEV 446 (1204)
T ss_dssp HHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 4444454555555432 123567777888887 33332110 1467778888
Q ss_pred HHHHHHhhcHhhHHhHHHHHHhhcC-------------------------CCChhhHHHHHHHHHHHHhhChhhH-Hhhh
Q 000201 681 ARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGAMAYCAPQQL-SQCL 734 (1866)
Q Consensus 681 l~~i~~~l~~~~v~~llp~L~~~L~-------------------------~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l 734 (1866)
++.++...+...+..+.+.+.+.+. +..|....+....+.++++++.... ..++
T Consensus 447 l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l 526 (1204)
T 3a6p_A 447 MRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEI 526 (1204)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 8888877766666666665544332 2346677777778888877653222 1233
Q ss_pred c-chhHHHhhhc---cCCChHHHHHHHHHHHHHHhhccc-h-hHHhHHHHHHHhhCCCCh-hHHHHHHHHHhccccccCC
Q 000201 735 P-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTVD 807 (1866)
Q Consensus 735 ~-~iv~~l~~~L---~D~~~~VR~aA~~aL~~l~~~i~~-~-~i~~lv~~L~~~l~d~~~-~vr~al~~L~~~~~~~~~~ 807 (1866)
+ .+++.++..+ +..+|.+|..+..+++.++.++.. | .+..+++.++..+.++.. .. . +
T Consensus 527 ~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~-------------~--~ 591 (1204)
T 3a6p_A 527 PVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEES-------------K--A 591 (1204)
T ss_dssp CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCST-------------T--S
T ss_pred cHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccc-------------c--c
Confidence 3 2445555543 456899999999999999887752 2 334455544444433110 00 0 0
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCC---HhHHHHHHHHHHHHH
Q 000201 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSLI 884 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~---~~vR~~a~~aL~~l~ 884 (1866)
. . .+.+.++|..|+.++..++..+ +..+.||++.+...+...+.... ..-+.....+++.++
T Consensus 592 ~-~------------~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 592 P-R------------TRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp C-C------------CHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred c-c------------cHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 0 0 0013478999999999999854 35788999999999998887444 555667778888887
Q ss_pred hhcCCC-----ChhhHHHHHHHhccc
Q 000201 885 RGMGEE-----NFPDLVSWLLDALKS 905 (1866)
Q Consensus 885 ~~~g~~-----~~~~l~~~L~~~L~~ 905 (1866)
..+++. ++..+++.+.+.+.+
T Consensus 657 ~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 657 NQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 665543 355666666666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=120.24 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=134.2
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
...++.+...+.|+++.+|..+..++..+.. +..+|.|.+.+.+++|.+|..++..|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------H
Confidence 3567788888899999999999998887643 3567888888889999999999999987753 3
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..|..... ...
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~ 144 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERA 144 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHH
Confidence 567778888999999999999999988763 2355677777777777777 45555544211 235
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
+|.|...++|.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+....
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 6667777777777777777777776632 235666666777777777777777777666543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.9e-06 Score=103.90 Aligned_cols=540 Identities=12% Similarity=0.081 Sum_probs=299.6
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 694 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~ 694 (1866)
.++.-|+..+...++. +..--+.++-.+...++..|.. +.-++..+. ..-..++||..+.-++..+.+..+...-+
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELI--LRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHH--TTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhc--cccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 4555555555533443 3444556666777777766655 333333322 35678899998888777776655533323
Q ss_pred hHHHHHHhhc----CCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhc-cCCChHHHHHHHHHHHHHHhh-
Q 000201 695 LVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 766 (1866)
Q Consensus 695 ~llp~L~~~L----~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~- 766 (1866)
.+...+-..+ .+..-..-..++.++..+..-.|+.....+ ....+.+.+.+ ...+..+..++.+.|...+..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 2222222222 121233344455566666555555433221 24455566555 345566777777777666532
Q ss_pred -ccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 767 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 767 -i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+++-..+..++.|...+.+ +.+| .++-.|..+.........+...+.+.+.+.+.....+.|..|++.+..+...
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 2222236677888877765 3455 3444554432222222345667889999999887777799999988887641
Q ss_pred CCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHhccc-CCCHHHHHHHHH
Q 000201 845 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKS-DNSNVERSGAAQ 917 (1866)
Q Consensus 845 ~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~-----~~~~l~~~L~~~L~~-~~~~~~R~~a~~ 917 (1866)
.+.++....-+..++.|.+.+.+ .+..+...+...|..+....... .+..+.++.-..... +...... ..-.
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11112112224567778888874 56677777888888877754321 112222221111000 0000000 0001
Q ss_pred HHHH-HHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhccCCChH---HHH
Q 000201 918 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENES---VRD 992 (1866)
Q Consensus 918 ~L~~-l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~d~~~~---VR~ 992 (1866)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..-... ...+ ...+++++..+....+. +|.
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R-~~lvqqGal~~LL~lL~s~~~~~~~~k~ 519 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI-PQLAQQGAVKIILEYLANKQDIGEPIRI 519 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH-HHHHHTTHHHHHHHHTTCC---CCHHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcCCCcchHHHH
Confidence 1111 1111111 247788889999999999999999999998653221 1122 35778888888765443 899
Q ss_pred HHHHHHHHHHHhhc------ccchhchHHhHhcccCC-Cch-------------HHHHHHHHHHHHHHHHhcCCcccccc
Q 000201 993 AALGAGHVLVEHYA------TTSLPLLLPAVEDGIFN-DNW-------------RIRQSSVELLGDLLFKVAGTSGKALL 1052 (1866)
Q Consensus 993 ~a~~al~~i~~~~~------~~~i~~llp~l~~~l~d-~~w-------------~vR~~s~~ll~~ll~~~~~~~~~~~~ 1052 (1866)
.|..|+..+.-... .......+|.+.+.+.. +.- .-+..++..+..+...
T Consensus 520 ~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~---------- 589 (778)
T 3opb_A 520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS---------- 589 (778)
T ss_dssp HHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----------
Confidence 99999988764221 11111244555554431 110 1255666666665411
Q ss_pred cCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH-HHhH----HH---HH
Q 000201 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL-KEIM----PV---LM 1124 (1866)
Q Consensus 1053 ~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l-~~~l----~~---l~ 1124 (1866)
++. ..+...+.++.. ...++.|...+.+.+..+|++|+.++..++.+ |... ..++ |. -+
T Consensus 590 ---~~n---~~E~~r~~Ii~~------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 590 ---ETS---DGEEVCKHIVST------KVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp ---CSH---HHHHHHHHHHHS------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHH
T ss_pred ---Ccc---cchHHHHHHHHh------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccH
Confidence 000 001111222221 12455555566777889999999999999974 4322 2332 22 26
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc---ccc--cchHHHHhcccCC--CCccchhhHHHHHHHHHH
Q 000201 1125 NTLISSLASSSSERRQVAGRALGELVRKLGE---RVL--PSIIPILSRGLKD--PSASRRQGVCIGLSEVMA 1189 (1866)
Q Consensus 1125 ~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~---~~l--~~llp~L~~~L~d--~~~~vr~~a~~~L~~li~ 1189 (1866)
+.++..+.+.+.++|.+|..+|+.+....+. .++ +..++.+...+.+ ++.++|+.++.++..+..
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6788888899999999999999988643322 111 2355566666666 788899999999988875
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-08 Score=125.53 Aligned_cols=338 Identities=14% Similarity=0.112 Sum_probs=222.7
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc-cch-hH-
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP-EI- 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i-~~~-~i- 772 (1866)
+|.++..|.++++.++..|+..|..++...+..- .-.-...+|.|+++|++.++.++..|+++|..++..- .+. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778888888888999999999999886544311 1122478999999999999999999999999998631 111 12
Q ss_pred -HhHHHHHHHhhC-CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh--------cC--------CCHHHHHHH
Q 000201 773 -ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKKA 833 (1866)
Q Consensus 773 -~~lv~~L~~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l--------~d--------~~~~vr~~a 833 (1866)
...+|.|.+.+. +++..++ .+...|......+..........+|.|.+.+ .+ .+.++.+.|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 356899999998 6676666 4656665533322211122336788888888 22 245667799
Q ss_pred HHHHHHHhhhcCCCcchhhhH--hhhhHHHHHHhcC------CCHhHHHHHHHHHHHHHhhc------------------
Q 000201 834 AQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM------------------ 887 (1866)
Q Consensus 834 ~~~l~~l~~~l~~~~~l~~~~--~~ll~~L~~~l~d------~~~~vR~~a~~aL~~l~~~~------------------ 887 (1866)
+.++.+++.. +....... +..++.|..++.+ ++..+.+.++.++..++...
T Consensus 164 ~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 164 TGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999873 22211122 2466666666653 34455555555555543100
Q ss_pred ----------------------------------CCC--ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--
Q 000201 888 ----------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-- 929 (1866)
Q Consensus 888 ----------------------------------g~~--~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-- 929 (1866)
|.+ .....++.+...+.+.++...+..++.+|+.++.+-+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000 113467777777776666678888899999987654331
Q ss_pred -----HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH-HHHHHHHHHhhccCCCh------HHHHHHH
Q 000201 930 -----YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVLPAILDGLADENE------SVRDAAL 995 (1866)
Q Consensus 930 -----~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~-l~~il~~ll~~l~d~~~------~VR~~a~ 995 (1866)
.+ ...+|.+++.+.+++..++..++.++..++..- +.... -...+|+++..+...++ ++...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 12 356799999999999999999999999998743 22222 25688999999886543 5666777
Q ss_pred HHHHHHHHhhccc--chh--chHHhHhcccCCC-chHHHHHHHHHHHHH
Q 000201 996 GAGHVLVEHYATT--SLP--LLLPAVEDGIFND-NWRIRQSSVELLGDL 1039 (1866)
Q Consensus 996 ~al~~i~~~~~~~--~i~--~llp~l~~~l~d~-~w~vR~~s~~ll~~l 1039 (1866)
.++..++..-... .+. ..+|.+.+.+.+. +.+++..+..++..+
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777766432211 111 2567777777777 788888888877665
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.9e-09 Score=119.52 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=166.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-----HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-----~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
++.+...+.++++.+|..|.+++..++.. ..... ...+|.+++.|.++++.+|..++.+|+.++...++.....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55666677888999999999999776665 22221 3578999999999999999999999999998665443222
Q ss_pred h-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC-
Q 000201 734 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 806 (1866)
Q Consensus 734 l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~- 806 (1866)
. ...+|.++.+++++++.||..|+++|+.++..-.+. .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 1 368899999999999999999999999998643322 11 4589999999999888777 466666553221100
Q ss_pred -CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 807 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 807 -~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
..-.-..++|.+.+.+.+.++.+|..++.++++++. ..+.....+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 001124578999999999999999999999999985 2322222222 247888889999999999999999988765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=113.36 Aligned_cols=183 Identities=21% Similarity=0.210 Sum_probs=109.2
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
+..++.+++.|.+++|.+|..++..|+.+.. +..++.+.+.+.|+++.||..|+++|+.++. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567778888888888888888888887643 3567778888888888899888888888753 2
Q ss_pred hHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 774 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
..++.|.+.+.|++..+| .++..|..... ...+|.|...+++.++.+|..++.+++.+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 345566666666666655 34444433110 1234555555666666666666666655532
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
+..++.|...+.|+++.||..++.+|+.+.. +..++.|...+.++ +..+|..+..+|+.+
T Consensus 142 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-TGFARKVAVNYLETH 201 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhc
Confidence 1234555555566666666666666655421 33444444444332 233555555555443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.4e-08 Score=114.10 Aligned_cols=231 Identities=19% Similarity=0.129 Sum_probs=174.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
.+|.+...+.++++.+|..|.+++..++..-+.. .+ ...+|.+++.|.++++.+|..++.+|+.++...++.....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4678888999999999999999999998754421 11 3589999999999999999999999999998754432211
Q ss_pred -hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC-
Q 000201 734 -LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 806 (1866)
Q Consensus 734 -l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~- 806 (1866)
-...+|.+..+++++++.||..|+++|..++..-.+ ..+ ...+|.+.+.+.+++..++ .++..+.........
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 136789999999999999999999999999853211 111 3579999999999888777 466666553221110
Q ss_pred -CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 807 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 807 -~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
..-.-...+|.+...+.+.++++|..++.++++++. ..+...... -...++.+..++.++++.+|..|..+|+.+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 011123578999999999999999999999999986 222111111 2357899999999999999999999999999
Q ss_pred hhcCCC
Q 000201 885 RGMGEE 890 (1866)
Q Consensus 885 ~~~g~~ 890 (1866)
...+..
T Consensus 241 ~~~~~~ 246 (252)
T 4hxt_A 241 SGGWLE 246 (252)
T ss_dssp HTCBCC
T ss_pred cCCCcc
Confidence 866544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-06 Score=109.38 Aligned_cols=478 Identities=11% Similarity=0.086 Sum_probs=291.0
Q ss_pred CCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH----cCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHH
Q 000201 548 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM----KSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 620 (1866)
Q Consensus 548 ~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~----~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L 620 (1866)
...++++..+.-.+..+...+.+.+.+.+..+++.+. .+.....-..+...++.+....+ ...+-..+..+.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l 260 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLF 260 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHH
Confidence 3456788888777777776666667777777777555 22122344555556655554332 1122223566777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc-HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH--hhHHhHH
Q 000201 621 REGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLVL 697 (1866)
Q Consensus 621 ~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~-v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~--~~v~~ll 697 (1866)
.+.+...++.....+++..+...|.. +....+ ....+|.|...+++ ..+|..|+-+|..+...-.. ..+..+.
T Consensus 261 ~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 261 KKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 77665555555555555555444432 112333 34677888887765 47788777777776553322 2357788
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhCh--hhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccc-----
Q 000201 698 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN----- 769 (1866)
Q Consensus 698 p~L~~~L~~~~w~~r~~a~~~L~~l~~~~~--~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~----- 769 (1866)
+.+.+.|.+++-..|.-|++.|+.+.-... +.+.. -+..++.|+.++++ .+..+...+...|.++.....+
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~-d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS-NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHH-CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHh-CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 999999988776779999999998876532 22322 24667778888875 5677888888888888875442
Q ss_pred hhHHhHHHHHHHhhC--CCChh-HH--HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 770 PEIASLVPTLLMGLT--DPNDH-TK--YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~--d~~~~-vr--~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+.+.++-+....... .+++. .. +.+.... ...+ .-..++|.|...+.+.++.+|..++.++.+++..
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~-~~~l------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN-EKYI------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHH-HHHT------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHH-HHHH------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 122222111111000 01111 00 0000000 0000 1134789999999999999999999999999862
Q ss_pred CCCcchhhhH-hhhhHHHHHHhcCCCHh---HHHHHHHHHHHHHhhcCCC------ChhhHHHHHHHhccc--CCC----
Q 000201 845 TEPKDMIPYI-GLLLPEVKKVLVDPIPE---VRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKS--DNS---- 908 (1866)
Q Consensus 845 ~~~~~l~~~~-~~ll~~L~~~l~d~~~~---vR~~a~~aL~~l~~~~g~~------~~~~l~~~L~~~L~~--~~~---- 908 (1866)
++...... ...++.|..++.+.... +|..|+.+|..+.....+. .....+|.|++.|.. ...
T Consensus 488 --~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 488 --KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp --GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred --HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 22222222 34677888888776544 8999999999998644321 112688899988872 111
Q ss_pred -------HHHHHHHHHHHHHHHHHhC---hh----HHH--HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc---hhhH
Q 000201 909 -------NVERSGAAQGLSEVLAALG---TV----YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQ 969 (1866)
Q Consensus 909 -------~~~R~~a~~~L~~l~~~~g---~~----~l~--~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g---~~f~ 969 (1866)
...+..++.+|..++..-+ .+ .+. ..+|.+...+.+++..+|.+++.++..|+..-. ..|.
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 1236678888888877542 11 333 478889999999999999999999999996443 2331
Q ss_pred hHH-H---HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc---cchh--chHHhHhcccCC--CchHHHHHHHHHHHH
Q 000201 970 NYL-Q---QVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP--LLLPAVEDGIFN--DNWRIRQSSVELLGD 1038 (1866)
Q Consensus 970 ~~l-~---~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---~~i~--~llp~l~~~l~d--~~w~vR~~s~~ll~~ 1038 (1866)
..- + +-++.++..+..+++++|.+|..++..+....+. ..+. ..++.+.+.+.+ ++..+|..++.++..
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 111 1 1377888999889999999999888877532221 1111 133344444444 567788888888887
Q ss_pred HH
Q 000201 1039 LL 1040 (1866)
Q Consensus 1039 ll 1040 (1866)
+.
T Consensus 726 L~ 727 (778)
T 3opb_A 726 LF 727 (778)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-08 Score=110.09 Aligned_cols=182 Identities=21% Similarity=0.213 Sum_probs=131.6
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
....+.+++.|.+++|.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+++|+.++. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H---
Confidence 5678889999999999999999999987653 3567788888999999999999999988753 2
Q ss_pred hHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 774 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
..++.|.+.+.|++..+| .++..|..... ...+|.+...+.+.++.+|..++.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 456777778888887777 46666554211 2356777777788888888888888877642
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 921 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~ 921 (1866)
+..++.|...+.|+++.||..|+.+|+.+.. +..++.|...+.+. +..+|..+..+|+.
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2356667777788888888888888877621 34555565555443 34567777666654
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=118.93 Aligned_cols=342 Identities=13% Similarity=0.088 Sum_probs=212.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhh--ccch-hH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~-~i 772 (1866)
+|.+++.|.+.+..++..|+..|..++....+.- .-.-...+|.|+.+|...++.|+..|+++|..++.. -.+. .+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4445555555555555555555555554332211 011126789999999999999999999999999863 1121 22
Q ss_pred --HhHHHHHHHhhCC-CChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh------------------cCCCHHHH
Q 000201 773 --ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAETK 830 (1866)
Q Consensus 773 --~~lv~~L~~~l~d-~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l------------------~d~~~~vr 830 (1866)
...+|.|++.+.. ++..++ .+...|......+.........-+|.|.+.+ ...+.+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 4578889888875 444554 3444444432222211122233466666644 11246999
Q ss_pred HHHHHHHHHHhhhcCC-CcchhhhHhhhhHHHHHHhc------CCCHhHHHHHHHHHHHHHhhcC---------------
Q 000201 831 KKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMG--------------- 888 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~-~~~l~~~~~~ll~~L~~~l~------d~~~~vR~~a~~aL~~l~~~~g--------------- 888 (1866)
..|+.+|.+++..-.+ ...+.. .+.+++.|..++. +++....+.++.+|..|.....
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999999999862111 011111 1234444555443 3456677788888877775421
Q ss_pred ---------CC-----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh------HH--HHHHHHHHHHhccCC
Q 000201 889 ---------EE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQR 946 (1866)
Q Consensus 889 ---------~~-----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~------~l--~~ll~~l~~~l~~~~ 946 (1866)
.. .-+..++.++..+.......++..++.+|..++.+-+.. .+ ...+|.+++.+.+++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 00 112456777777865555668888999999887643221 11 356899999999999
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC--------ChHHHHHHHHHHHHHHHhhccc--c-hh-chH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYATT--S-LP-LLL 1014 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~--------~~~VR~~a~~al~~i~~~~~~~--~-i~-~ll 1014 (1866)
..+++.+..++.+|+...... ...-...+|.++..|.+. .+++...++.++..++..-... . ++ -.+
T Consensus 369 ~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I 447 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Confidence 999999999999999865432 223456889999998765 3577888888887766421111 1 11 156
Q ss_pred HhHhcccCCC--chHHHHHHHHHHHHHH
Q 000201 1015 PAVEDGIFND--NWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 1015 p~l~~~l~d~--~w~vR~~s~~ll~~ll 1040 (1866)
|.+...+.+. ..+++..+..++..+.
T Consensus 448 ~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 448 EKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6676666654 6678888888887775
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-07 Score=116.09 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=226.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhh---h--HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---Cc
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GI 608 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~---~--~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~ 608 (1866)
.-++.++..|.++++++|..++.++..+.....+. . ..-++.|+.. +.+++..++..|+.+|..++.+. ..
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46788899999999999999888887665432211 1 1245555544 46677899999999999999741 22
Q ss_pred chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHc------------------CCCC
Q 000201 609 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQV 670 (1866)
Q Consensus 609 ~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~------------------~D~~ 670 (1866)
..+...+.++.|.+.+.+..+...++.+..++..|+.... .-...+...+|.|...+ ..++
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 3344557889999988865566677778888888875221 11112344566666544 1235
Q ss_pred HHHHHHHHHHHHHHHHhhcH--hhH---HhHHHHHHhhcC------CCChhhHHHHHHHHHHHHhhChhhHH--------
Q 000201 671 VAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCAPQQLS-------- 731 (1866)
Q Consensus 671 ~~VR~~a~~al~~i~~~l~~--~~v---~~llp~L~~~L~------~~~w~~r~~a~~~L~~l~~~~~~~~~-------- 731 (1866)
..|+..|..+|..++..-.. ..+ ..+++.|+..+. +.+.+....|+.+|.+++++......
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 79999999999999753221 111 235566666654 24567788899999988876321110
Q ss_pred ----------------h--hhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc--ch----hH--HhHHHHHHHhhC
Q 000201 732 ----------------Q--CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK--NP----EI--ASLVPTLLMGLT 784 (1866)
Q Consensus 732 ----------------~--~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~--~~----~i--~~lv~~L~~~l~ 784 (1866)
. .-+..++.++.++. ..++.++++|+++|..++..-. .. .+ ...+|.|.+++.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 0 11345677888885 4579999999999999974211 01 22 356999999999
Q ss_pred CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhhcCCCcchhhh-H
Q 000201 785 DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPY-I 854 (1866)
Q Consensus 785 d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~--------~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~ 854 (1866)
.++..++ .+...|.............-...+|.|.+.|.+. +.++...++.++++++. +++...... -
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~ 443 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRE 443 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 9888776 4555554433322222233456789999888764 46888899999999975 232222211 2
Q ss_pred hhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHh
Q 000201 855 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~ 885 (1866)
...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 24677788888765 77888888888887764
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-06 Score=114.18 Aligned_cols=412 Identities=15% Similarity=0.105 Sum_probs=217.0
Q ss_pred cHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhc-
Q 000201 1094 SLSVRQAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR- 1167 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p----~~l~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~- 1167 (1866)
+..-..+|++++..+..+.. ........-+.+.+.+.+. +-+++....-..|+.-+....++.-.+.++..+..
T Consensus 521 dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~ 600 (997)
T 1vsy_5 521 DKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINA 600 (997)
T ss_dssp CHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHh
Confidence 33344555555555554321 2233344455555656666 45666666666677777766666667777776632
Q ss_pred -c-c--CCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHH
Q 000201 1168 -G-L--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 1243 (1866)
Q Consensus 1168 -~-L--~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp 1243 (1866)
. + .+...-.....+..|..++...+-. ... ...++..+. +..+...||++....+..+....-...... +.
T Consensus 601 ~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~ 675 (997)
T 1vsy_5 601 DGMFDRESDAATHQTSKIYMLRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PT 675 (997)
T ss_dssp CCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HH
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HH
Confidence 1 1 1112222222233333333333311 111 344444444 777889999998888887765431111111 12
Q ss_pred HHHHhccCC---------CchhHHHHHHHHHhhccccccchhhhhhhhcCC-ccch----hHHHHHHHHHHhCCC----c
Q 000201 1244 TLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAF----NAHALGALAEVAGPG----L 1305 (1866)
Q Consensus 1244 ~Ll~~L~~~---------~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~-~~~~----~~~al~~La~~~g~~----l 1305 (1866)
.+++.-.+. .........+..++..-.. .-... ....... .... ....+..+...++.. +
T Consensus 676 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~-~~~~~-~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 676 TLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKN-LEDSV-VGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTG-GGGTT-SSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHHHhhccccccccCccccCcchHHHHHHHHHHHHHH-hhhcc-cccCccccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 222221111 0011112222222110000 00000 0000000 0011 122344555555554 6
Q ss_pred hhhHhh-HHHHHHHhcCCCCH-HHHHH-HHHHHhHhhhc-cchhcHHHHHHHHHhccC-CCchhHHHHHHHHHHHHH-hh
Q 000201 1306 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLV-IDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 1379 (1866)
Q Consensus 1306 ~~~l~~-il~~L~~~l~~~~~-~vr~~-a~~~l~~l~~~-~~~~~~~~ll~~L~~~l~-~~~~~vR~~a~~~l~~l~-~~ 1379 (1866)
.++++. ++|.++.....++. ++... +..++..+... +..+.++.++..+....+ +.+| .|.+++..+..+. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 677777 77777766655543 45444 44455555332 245667888888877666 5789 9999999988774 33
Q ss_pred ccchhhhhHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcC-CcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCC
Q 000201 1380 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 1457 (1866)
Q Consensus 1380 ~~~~~~~~~~~il~~L~~ll~d~~-~~v~~~A~~aL~~l~~~~-~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 1457 (1866)
.-.--......++..++.+|.|+. .+||+.|..+|+.+++.. +......++..+++....
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~------------------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV------------------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT------------------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------------------
Confidence 322112233577888888999999 999999999999999876 533333333322221100
Q ss_pred cCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhh-hhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000201 1458 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536 (1866)
Q Consensus 1458 ~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~-l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L 1536 (1866)
.+.... ++- .. ..+...|..+..+|+.++...|-.. ..++++.++..|.+...+ +..++..+=.+++++
T Consensus 895 ---~~~~~~-~~~---~~-~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlseF 964 (997)
T 1vsy_5 895 ---NKYTSK-ERQ---KL-SKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISEF 964 (997)
T ss_dssp ---TSSCHH-HHH---HH-HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHHH
T ss_pred ---cccccc-ccc---cc-chHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHHH
Confidence 000000 110 00 0111467889999999999884332 267888887777666665 445888888888887
Q ss_pred HHhcC
Q 000201 1537 IRKGG 1541 (1866)
Q Consensus 1537 ~~~~~ 1541 (1866)
-+.-.
T Consensus 965 krTH~ 969 (997)
T 1vsy_5 965 KKVRA 969 (997)
T ss_dssp HHHTS
T ss_pred Hhccc
Confidence 65443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-07 Score=116.59 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=222.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 692 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~ 692 (1866)
+|.+.+.+.+. ++..+..|..++..++..-.. ....+ ...+|.+..++.++++.++..|.+++..++..-+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666666654 456788888888888742221 12122 257999999999999999999999999998742221 1
Q ss_pred H--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc--------cC--------CChHHH
Q 000201 693 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TD--------THPKVQ 753 (1866)
Q Consensus 693 v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L--------~D--------~~~~VR 753 (1866)
+ ...+|.|++.|. +.+..++..++.+|++++.+..... ......+|.|+.++ .+ .++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 1 346899999998 7889999999999999998732111 11227788888888 22 245677
Q ss_pred HHHHHHHHHHHhhccc-hhH---HhHHHHHHHhhCC------CChh-HHHHHHHHHhcccc-------------------
Q 000201 754 SAGQTALQQVGSVIKN-PEI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTFV------------------- 803 (1866)
Q Consensus 754 ~aA~~aL~~l~~~i~~-~~i---~~lv~~L~~~l~d------~~~~-vr~al~~L~~~~~~------------------- 803 (1866)
..|+++|..++..-.+ ..+ ...+|.|...+.+ ++.. +..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 7999999999875111 122 1677777777653 3322 33344333221110
Q ss_pred ---------------------------------ccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCC-c
Q 000201 804 ---------------------------------NTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 848 (1866)
Q Consensus 804 ---------------------------------~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~-~ 848 (1866)
+....-....++|.+...+.+ .+++++..|+.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000000123456667777654 46899999999999998621110 0
Q ss_pred ch-hhhH--hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHhcccCCC-----HHHHHHHHHH
Q 000201 849 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 918 (1866)
Q Consensus 849 ~l-~~~~--~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~--~~~~l~~~L~~~L~~~~~-----~~~R~~a~~~ 918 (1866)
.+ .... ...+|.|.+++.+++.+++..|+.+|..++..-.-. .-...+|.|.+.|..... ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 123578888888876432 2344566677
Q ss_pred HHHHHHHhChh--HH--HHHHHHHHHHhccC-ChhHHhHHHHHHHHhhh
Q 000201 919 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPR 962 (1866)
Q Consensus 919 L~~l~~~~g~~--~l--~~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~ 962 (1866)
|+.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+..
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 77776533322 11 35678888888888 88999988888876653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-08 Score=111.87 Aligned_cols=227 Identities=18% Similarity=0.125 Sum_probs=168.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 692 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~ 692 (1866)
.++.|.+.+.+.+ +..|..|+.++..++...+......+ ..++|.+...+.+++..+|..+.+++..++..-+.. .
T Consensus 3 ~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3566777776654 77888899988888865432222222 258999999999999999999999999997642221 1
Q ss_pred H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 693 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 693 v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+ ...+|.++..+.++++.+|..++.+|+.++...+...... -...+|.+++++.+.++.||..|+++|+.++..-.+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 1 3579999999999999999999999999997655432211 136889999999999999999999999999864221
Q ss_pred h--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC--CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 770 P--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV--DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 770 ~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~--~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
. .+ ...+|.|.+.+.++++.++ .++..+......... ..-.-..++|.+.+.+++.++++|..|+.++++++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1 11 4589999999999888877 466666553221100 000123478999999999999999999999999998
Q ss_pred h
Q 000201 843 L 843 (1866)
Q Consensus 843 ~ 843 (1866)
.
T Consensus 242 ~ 242 (252)
T 4hxt_A 242 G 242 (252)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-08 Score=115.47 Aligned_cols=252 Identities=15% Similarity=0.197 Sum_probs=171.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
..+.++..|+ ++.|.+|.||+-+|..+++..|....+. +..+ +..|+..+..++ + +.|..|
T Consensus 175 fcE~L~~DLF-dp~WEiRHGAALGLREILR~hG~GAGR~------------~~~N---~DLAvRLLCVLA--L-DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVD---SKLFSKIYEILV--T-DKFNDF 235 (800)
T ss_dssp TTHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCC----CC------------CCCC---TTHHHHHHHHHH--H-BCCBBC
T ss_pred HHHHHHHHhc-CcchhhhhHHHHHHHHHHHHhccCCcee------------cccc---HHHHHHHHHHHH--h-cccccc
Confidence 5555666676 5679999999999999999876433221 1111 134444444444 2 235555
Q ss_pred HHhHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 655 VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 655 v~~llp~ll~~~~D-~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
+ +| ....||++++++++.+ ..+++. -.++-.++..+..+.|.+|++++..|..+ .++...
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 4 33 2467999999999999 888876 35666666777888999999999999988 222223
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC---hhHHHHHHHHHh-ccccccCCcc
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQ-TTFVNTVDAP 809 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~---~~vr~al~~L~~-~~~~~~~~~~ 809 (1866)
++.+++.++..|+|.+.+||..|+.+|..++ ....+..++..+++.+.+-+ ..+...++.|.. ..+.. ...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccc
Confidence 7899999999999999999999999999988 44568888999988886543 233333444433 11111 111
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHH-HHHHhcCCCHhHHHHHHHHHH
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~-L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
..+.++|.+...+...-..||..+.+++..+.. ..++.. +...+-.++.+++..+.+...
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~------------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE------------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC------------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 123788888888899999999998877766541 112222 334566788888888877764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=140.23 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=66.7
Q ss_pred chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1160 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1160 ~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
.++|.+.. |++++++.|..||.+|++++.......+.-+.+.+.+.+...+.|++.+||.+|+.+|..++...|++..+
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 56776654 78899999999999999987532222222222344456778899999999999999999998887776554
Q ss_pred h-----HHHHHHHhcc
Q 000201 1240 E-----IVPTLLHALE 1250 (1866)
Q Consensus 1240 ~-----ilp~Ll~~L~ 1250 (1866)
. ++|.|+..++
T Consensus 114 ~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 4 6777776654
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-08 Score=113.41 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhh-----HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC--cch
Q 000201 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 610 (1866)
Q Consensus 538 l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~-----~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~ 610 (1866)
.++.++..|.+++++++..++.++..++....+.. ...++.++..| .+++..+|..|+.+|..+..+.. ...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46777778888888899999998865544322111 12344455444 55668899999999999987421 122
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+...+.++.|.+.+.+. ++..|+.|+.+++.++..........+ ...+|.+...+.+++..||..+.+++..++..-+
T Consensus 92 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 22346889999988874 578899999999998765332111122 2588999999999999999999999999976432
Q ss_pred Hhh---H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 690 AQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 690 ~~~---v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
... + ..++|.+++.+.++++.+|..++.+|+.++...+....... ..+++.+..++.+.+++||..|+++|..++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 211 1 45789999999999999999999999999977665432222 368899999999999999999999999876
Q ss_pred h
Q 000201 765 S 765 (1866)
Q Consensus 765 ~ 765 (1866)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-07 Score=112.32 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=201.6
Q ss_pred HhHHHHHHhhcCCC------------ChhhHHHHHHHHHHHHhhChhhHHh--------hh---cchhHHHhhhccCCC-
Q 000201 694 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQ--------CL---PKIVPKLTEVLTDTH- 749 (1866)
Q Consensus 694 ~~llp~L~~~L~~~------------~w~~r~~a~~~L~~l~~~~~~~~~~--------~l---~~iv~~l~~~L~D~~- 749 (1866)
...+|.|++.|... +...|..|+++|.+++.+.|++... .| ....+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 45788888888653 2689999999999999988765322 11 122244444444321
Q ss_pred -h-----HHHH-------HHHHHHHHHHhhccch-hH--HhHHHHHHHhhC----------C-CChhHH-HHHHHHHhcc
Q 000201 750 -P-----KVQS-------AGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT----------D-PNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 750 -~-----~VR~-------aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~----------d-~~~~vr-~al~~L~~~~ 801 (1866)
. .|+. .|+++|+.++..-.+. .+ ...++.|...+. + ++..++ .+...|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1665 8888898886532221 12 346677776663 1 112233 4555555533
Q ss_pred ccccCCcch---hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHH-hcCCCHhHHHHH
Q 000201 802 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKV-LVDPIPEVRSVA 876 (1866)
Q Consensus 802 ~~~~~~~~~---l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~-l~d~~~~vR~~a 876 (1866)
+........ ....+|.|.+.+.+.+.+++..|+.++.+++.. .+........ ...+|.|.++ +.+.++.++..+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 322111111 234689999999999999999999999999752 1111111111 2467788886 456788999999
Q ss_pred HHHHHHHHhhcCC---CC--hhhHHHHHHHhcccCCCH---HHHHHHHHHHHHHHHH--hChhHH-----HHHHHHHHHH
Q 000201 877 ARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTVYF-----EHILPDIIRN 941 (1866)
Q Consensus 877 ~~aL~~l~~~~g~---~~--~~~l~~~L~~~L~~~~~~---~~R~~a~~~L~~l~~~--~g~~~l-----~~ll~~l~~~ 941 (1866)
+.+|..++....+ .. ....+|.|.+.+.+..+. .++..++..|..++.. .+.+.. ...+|.+++.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 9999999873211 11 246788888888765432 3677788888877752 222211 3468899999
Q ss_pred hccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 000201 942 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 942 l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~ 1005 (1866)
+.+.+..+++.+..++..++...... ..++ ...+|++...+...++.+++.|..++..+...-
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998533322 2333 357899999999999999999999999887653
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-07 Score=112.43 Aligned_cols=317 Identities=12% Similarity=0.020 Sum_probs=201.9
Q ss_pred hcchHHHHHHHHhCCC-----------cHHHHHHHHHHHHHHHHHhCcCchhcHH-hH----------HHHHHHHcCCCC
Q 000201 613 KYGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-QM----------LPLLLVAFSDQV 670 (1866)
Q Consensus 613 ~~~ii~~L~~~i~~~~-----------~~~~r~~al~al~~L~~~l~~~~~p~v~-~l----------lp~ll~~~~D~~ 670 (1866)
..+.+|.|.+.+...+ ++..+..|..++..|+.+-++....... .+ .+.++.++..+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 4467777777776532 3688888999999999887654433211 11 133333333221
Q ss_pred -------HHHHH-------HHHHHHHHHHHhhcHh-hH--HhHHHHHHhhcC-----------CCChhhHHHHHHHHHHH
Q 000201 671 -------VAVRE-------AAECAARAMMSQLSAQ-GV--KLVLPSLLKGLE-----------DKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 671 -------~~VR~-------~a~~al~~i~~~l~~~-~v--~~llp~L~~~L~-----------~~~w~~r~~a~~~L~~l 722 (1866)
..||+ .|.++|..++..-... .+ ...++.|+..|. +.+...+..|+.+|..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 12666 7888888875431111 11 235666666652 12356789999999999
Q ss_pred HhhChhhH--HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhc
Q 000201 723 AYCAPQQL--SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 800 (1866)
Q Consensus 723 ~~~~~~~~--~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~ 800 (1866)
+.+.+..- .......+|.|+.+|...+++|+..|+++|..++.. .++... ..+.
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k------------------~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSK------------------KTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHH------------------HHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHH------------------HHHH-----
Confidence 98765321 112356789999999999999999999999998742 111110 0000
Q ss_pred cccccCCcchhhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh--HhhhhHHHHHHhcCCCH----hHH
Q 000201 801 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 873 (1866)
Q Consensus 801 ~~~~~~~~~~l~~l~p~L~~~-l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~--~~~ll~~L~~~l~d~~~----~vR 873 (1866)
-...+|.|.+. +...+.+++..++.++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344567788888888888876221111 111 23578888888886654 489
Q ss_pred HHHHHHHHHHHhh--cCCCC-----hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH--HHHHHHHHHH
Q 000201 874 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRN 941 (1866)
Q Consensus 874 ~~a~~aL~~l~~~--~g~~~-----~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l--~~ll~~l~~~ 941 (1866)
..|..+|..++.. .+++. -...+|.|+..|.+.. ..++..++.+|+.++..- .+ .+ ...+|.+.+.
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHH
Confidence 9999999998862 12221 1247888998887654 458889999999887421 22 12 3567889999
Q ss_pred hccCChhHHhHHHHHHHHhhhhhchh
Q 000201 942 CSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 942 l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
+.+.++.+|+.+..++..|+..-+..
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 99999999999999999998765543
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.6e-05 Score=105.56 Aligned_cols=141 Identities=13% Similarity=0.001 Sum_probs=86.8
Q ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcCc--
Q 000201 576 VSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRLF-- 651 (1866)
Q Consensus 576 l~~ll~~L~~~-~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~~-- 651 (1866)
+..++..+... .+...|+.|-..|..+-+.. + -...+...+ ....+...|..|...+......-...+
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 33444444443 24556888877777654432 1 122222222 244567788888877777765422222
Q ss_pred --hhcHH-hHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 000201 652 --EPYVI-QMLPLLLVAFS---DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 652 --~p~v~-~llp~ll~~~~---D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
..++. .++..+..... +....||.....++..|+..--+..++.+++.+.+.+++ +...+..++.+|..+.+-
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 22333 23444333221 256899999999999999886666778899999988866 456678888888888753
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-07 Score=99.75 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=132.4
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHhC---cCchhc-HHhH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA---DRNSAKRREGALLAFECLCEKLG---RLFEPY-VIQM 658 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~---~~~~~~~r~~al~al~~L~~~l~---~~~~p~-v~~l 658 (1866)
++++..|..|...|...+.....+.+ ..++.+.+.+. .+++...-..++..+..+...++ ..+.+| ...+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 45778888888877776654321211 22233333322 13467777778888888776654 447777 5789
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+|.++..++|+++.||+.+.+.+..+....++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l 206 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSL 206 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGG
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----cccc
Confidence 99999999999999999999999888876554 4577888889999999999999999999987654432 2456
Q ss_pred ---HHHhhhccCCChHHHHHHHHHHHHHHhhccch
Q 000201 739 ---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770 (1866)
Q Consensus 739 ---~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 770 (1866)
|.+.+++.|+++.||.+|..|+..+-...++.
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999888877764
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-07 Score=101.97 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
...|.+..++.++++.+|..|.+++..++..-... .+ ...+|.+++.|.++++.+|..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567778889999999999999999998533221 11 357899999999999999999999999999766544222
Q ss_pred hh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchh
Q 000201 733 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l 811 (1866)
.+ ...+|.++.++++.++.||..|+++|..++..- +.... .+ .-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~---~~------------------------------~~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQ---AV------------------------------ID 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHH---HH------------------------------HH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHH---HH------------------------------HH
Confidence 11 368899999999999999999999999998522 11100 00 01
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHh
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~ 885 (1866)
...+|.+.+.+++.+.++|..++.++++++.. .+..... .-...++.|.+++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 23567777778888889999999999999872 2111111 123578889999999999999999999998763
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.3e-06 Score=82.21 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+.++.++. ++.++-|.+++.|..-+..+++... +.. ..++..|...+..+.....-+....+||.++..-+
T Consensus 31 ~~~l~~lI~-~LDDDlwtV~kNAl~vi~~i~~~~~-el~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---- 102 (253)
T 2db0_A 31 ESVLKKLIE-LLDDDLWTVVKNAISIIMVIAKTRE-DLY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---- 102 (253)
T ss_dssp HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCG-GGH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHH-HhccHHHHHHHhHHHHHHHHHHHhH-HHH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----
Confidence 344555544 3467789999999999999998762 211 12344444444443333344566778888887643
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
..+..++|.++....-.++.+|-....++..|+..- |.....++..+...+.+++---|..++.+++++.++.++...
T Consensus 103 e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~- 180 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN- 180 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG-
T ss_pred HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC-
Confidence 246788999999888889999999999999998754 455577888888899999988999999999999988776654
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
+.+|.+..+|.|.+..||..|+.+|..++.. +|.+..++..-++-+.|+++.+.
T Consensus 181 ---PfLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 181 ---PFLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp ---GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred ---cchHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 5567788899999999999999999999863 67788888888888899886543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=103.51 Aligned_cols=189 Identities=20% Similarity=0.177 Sum_probs=143.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC--cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
....+..|++++++.+|..|+.+|..+..+.. ...+...+.++.|.+.+.+. ++..|+.|+.+++.++.........
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 33455566678889999999999999986421 12233447889999988875 5788999999999887532211111
Q ss_pred cH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 654 YV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 654 ~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
.+ ...+|.+...+.++++.+|..+.+++..++..-... . + ...+|.+++.+.+++..+|..++.+|+.++...+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 12 247899999999999999999999999997633221 1 1 45789999999999999999999999999987554
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
..... -...++.+.+++.+.++.||..|+++|..++.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 42221 23688999999999999999999999998864
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.64 E-value=8.1e-05 Score=100.30 Aligned_cols=391 Identities=15% Similarity=0.103 Sum_probs=226.5
Q ss_pred hccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccc----hhhhhHHHHHHHHHHHhC-CCChhHHHHHHHHH
Q 000201 1340 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL----YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEAL 1414 (1866)
Q Consensus 1340 ~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~il~~L~~ll~-d~~~~v~~~A~~aL 1414 (1866)
.++++..++.+.+.+...+.+.+...+..+++.++.+....+. ........+.+.+...++ +-.++....-..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4566666777888887777888888888999999888765432 223333445555556677 56777666555556
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhh---hh-hhhhhcCCc--cc------cCCcCCCCCccccHHHHHHhhccCCHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSR---DK-ERRKKKGGP--IL------IPGFCLPKALQPLLPIFLQGLISGSAEL 1482 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~---~~-~~~~~~~~~--~~------l~g~~~~~~l~~ilp~l~~~L~~~~~~~ 1482 (1866)
..+....+..-.+.++. .+.... +. ......... .. -.|.-.+. ...++..++ +.++...+
T Consensus 579 ~~~~~~~DprR~~~L~e----~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~V 651 (997)
T 1vsy_5 579 WWLPAVVDLRRSKTFFC----HFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQV 651 (997)
T ss_dssp HHHHHHSCGGGCHHHHH----HHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHH
T ss_pred HHHhcCCChhhhHHHHH----HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHH
Confidence 66655554443343333 221110 00 000000000 00 01111222 344444444 56667889
Q ss_pred HHHHHHHHHHHHhhcChh---hhh---------------------hhhhhhhHHHHHHhc-------CCCCH-HH---HH
Q 000201 1483 REQAALGLGELIEVTSEQ---SLK---------------------EFVIPITGPLIRIIG-------DRFPW-QV---KS 1527 (1866)
Q Consensus 1483 r~~a~~~L~~l~~~~~~~---~l~---------------------~~v~~i~~~Li~~l~-------~~~~~-~v---r~ 1527 (1866)
|+..+..++.++...-.. ... +.+...+..+...+. ++.+. .. -.
T Consensus 652 Re~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~ 731 (997)
T 1vsy_5 652 RQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYF 731 (997)
T ss_dssp HHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHH
Confidence 999999988887654100 000 000110111111111 11110 01 11
Q ss_pred HHHHHHH-HHHHhcCCC----CCCchHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHhccCChhhHHHHHHHHhcc--
Q 000201 1528 AILSTLS-IIIRKGGIA----LKPFLPQ-LQTTFIKCLQDSTR-TVRSS-AALALGKLSALSTRVDPLVGDLLSSLQV-- 1597 (1866)
Q Consensus 1528 ~al~~L~-~L~~~~~~~----~~~~lp~-L~~~l~~~l~d~~~-~vR~~-Aa~aLg~L~~~~~~~~~~l~~L~~~l~~-- 1597 (1866)
..+.|+. -+...++.. +.|+++. ++|.+++..+..+. ++... |..++..+.. .+-....++.++..+..
T Consensus 732 ~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~-~~~~~~~~~~~l~~l~~~~ 810 (997)
T 1vsy_5 732 YRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY-MPIRKNHVAAIVDYVCSSN 810 (997)
T ss_dssp HHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS-SCCCHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Confidence 1222332 233333332 3344444 55555555555543 55555 5566665532 23345556666666532
Q ss_pred ---CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHH
Q 000201 1598 ---SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD-DHVRVSAASILGIMSQCM-EDGQLADLLQELL 1672 (1866)
Q Consensus 1598 ---~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~-~~vr~~aa~~l~~L~~~~-~~~~~~~~l~~ll 1672 (1866)
++. .|..++.-+..++.+----++......|++.+...+.|+. -+||+.|+.+|+.+.+.. +......++..+-
T Consensus 811 ~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~ 889 (997)
T 1vsy_5 811 VALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFA 889 (997)
T ss_dssp TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHT
T ss_pred hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 356 8999988887776644334555666899999999999999 999999999999998887 6344555555554
Q ss_pred hccCC------------CCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhh
Q 000201 1673 NLASS------------PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740 (1866)
Q Consensus 1673 ~~~~~------------~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~ 1740 (1866)
++... .....||+++++|.+++..+|-.+-.+++.++++..+.....+++ +++.++-.+++..-...
T Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 890 KGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKVR 968 (997)
T ss_dssp TSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHHT
T ss_pred HHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhcc
Confidence 44422 111468999999999999999776446678889999998888854 49999989888876544
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-05 Score=80.45 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=162.0
Q ss_pred hhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000201 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 931 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l 931 (1866)
.|-..++..+...+.|.-|.||+-|...+..+++...+ .+..++..|+..++.++.....+..+..+|.++.. .++..
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v 105 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV 105 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH
Confidence 45567888999999999999999999999999986653 45667777877777666655556666677766653 45677
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchh
Q 000201 932 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1011 (1866)
Q Consensus 932 ~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~ 1011 (1866)
..++|.++.+..-.++..|.+.-.+++.++...+. .++.++.-+...+.+++..-|.+++..+..+..+. .+.+.
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~yv~ 180 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FKYVN 180 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHHHG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-ccccC
Confidence 88999999999888999999999999999998876 45667777788888888777777776555443332 23456
Q ss_pred chHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcC
Q 000201 1012 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1091 (1866)
Q Consensus 1012 ~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~ 1091 (1866)
.++|.+...+.|.+.-+|.++++.++.+...- +.+..++...+...+
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n---------------------------------pklRkii~~kl~e~~ 227 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLN---------------------------------DKLRKVVIKRLEELN 227 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC---------------------------------HHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcC---------------------------------HHHHHHHHHHHHHhc
Confidence 68899999999999999999999999874210 111223333334568
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 000201 1092 DVSLSVRQAALHVWKTIV 1109 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~ 1109 (1866)
|.+..|.....+.++.+.
T Consensus 228 D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 228 DTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 888888777777666654
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-07 Score=104.92 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=141.5
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHH
Q 000201 1017 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1096 (1866)
Q Consensus 1017 l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~ 1096 (1866)
+.+.+.+++|+.|.++++-+..++....... .+|+. .. .+.+....+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~-----~~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQ-----IYWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------C-----CTTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HH-----HHHHHHHHHHHHhccchHH
Confidence 5677889999999999998887764322110 00000 00 0112223333456899999
Q ss_pred HHHHHHHHHHHHhhcCh------hhHHHhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhccc
Q 000201 1097 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169 (1866)
Q Consensus 1097 vR~~A~~~l~~l~~~~p------~~l~~~l~~l~~~L~~~-l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1169 (1866)
|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++..... ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677778877764 8899999999999999888865432 345567778888
Q ss_pred CCCCccchhhHHHHHHHHHHhhchhh--HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1170 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1170 ~d~~~~vr~~a~~~L~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+.+|.+|.+++.+|..++..+|... ..+.++.+++.+.+++.|.++.||++|..++..++..+|+.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998877543 34566778888889999999999999999999999988863
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.5e-07 Score=103.23 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=138.7
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHhhChhh-----HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-----
Q 000201 700 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 769 (1866)
Q Consensus 700 L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-----~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~----- 769 (1866)
+.+.|.+++|..|..|++.|..+....+.. ....+..+.+.+.+.+.|++..|...++.++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 568899999999999999999888765433 2223556677778889999999999999999999875542
Q ss_pred ----hhHHhHHHHHHHh-hCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 770 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 770 ----~~i~~lv~~L~~~-l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
..+..++|.++.. +.++...++ .++..+....... .....+++.+..++++.++.+|..++.++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346678887764 788887776 4555554421111 12345678888899999999999999999998876
Q ss_pred cCCC-cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 844 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 844 l~~~-~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
++.. ....+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 2345567788999999999999999999999999999999864
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-06 Score=94.52 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=144.1
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-------hh
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 771 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-------~~ 771 (1866)
.+...|.+++|+.+..+++.|.......++.+...+.-+++-+.-.+.|+++.|-..+...|..+...+.+ .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45666788899999999999998888788777776666666655556699999999999999988765542 23
Q ss_pred HHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchh
Q 000201 772 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 851 (1866)
Q Consensus 772 i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~ 851 (1866)
...++|.|+..+.|+.+.+|+....+...-. .+ .....+.+.+..++++.+|.+|..+++.++.+....|-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~--~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS--DV--VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH--HH--HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HH--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 5679999999999999999865554443100 00 123457888999999999999999999999999876553
Q ss_pred hhHhhhh---HHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 852 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 852 ~~~~~ll---~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
+ ...+ +.+.+++.|++..||..|..++..+....|+..
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 3356 888999999999999999999999999998763
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.5e-06 Score=95.28 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhc
Q 000201 631 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL 704 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~-~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L 704 (1866)
..|..|+..|..+++.... -..+. ...+|.++. ++.++++.||..|+++++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4666777777777764331 01111 246788888 999999999999999999998754322 12 35789999988
Q ss_pred CC-CChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 705 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 705 ~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.+ ++..+|..|+.+|+.++.+.+....... ...+|.|..+|++.++.|+..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 74 5789999999999999988765432221 36889999999999999999999999999865
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-05 Score=95.66 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHhCcCchhcH---HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHH
Q 000201 630 AKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLL 701 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~~~~~p~v---~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~ 701 (1866)
...+..|..++..|+.+-.. ....+ ..++|.|...+..+++.++..|.++|..++..-.+ ..+ ...+|.|+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 45667788888888743221 12222 34699999999999999999999999999764222 122 34688898
Q ss_pred hhc-CCCChhhHHHHHHHHHHHHhhChhh-HHhh-hcchhHHHhhhccCCCh----HHHHHHHHHHHHHHhhcc-chhHH
Q 000201 702 KGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-NPEIA 773 (1866)
Q Consensus 702 ~~L-~~~~w~~r~~a~~~L~~l~~~~~~~-~~~~-l~~iv~~l~~~L~D~~~----~VR~aA~~aL~~l~~~i~-~~~i~ 773 (1866)
+.| .+.+..++..++.+|.+++...++. ..-. -...+|.|++++.+.++ +|+..|+++|..++..+. +++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 874 6678899999999999999855332 1111 35788999999987654 599999999999885321 22111
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 774 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
. . +. -...+|.|...+.+.+.+++..|+.++.+++. ++++.....
T Consensus 257 ~------------------~---i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i 301 (354)
T 3nmw_A 257 Q------------------I---LR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEAL 301 (354)
T ss_dssp H------------------H---HH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHH
T ss_pred H------------------H---HH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 0 0 00 01246777777888888999999999999985 222222111
Q ss_pred H-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 854 I-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 854 ~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
. ...+|.|.+++.+++..+|+.|..+|..++..-+..
T Consensus 302 ~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 302 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 346889999999999999999999999999864443
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-05 Score=96.46 Aligned_cols=254 Identities=15% Similarity=0.086 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHhhhhccCCcch--HHHHHHHHHhcC-----------CCcHHHHHHHHhhhhhhhHhhhh---hh---
Q 000201 512 LVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLN-----------TPSEAVQRAVSSCLSPLMQSMQD---EA--- 572 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~~--~~l~~~l~~~l~-----------~~~~~v~~~~~~~l~~lv~~~~~---~~--- 572 (1866)
.....|+-+|+.++..-+. ...+ ...++.++..|. ..++.+|..++.+|..+.....+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~-R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455677777777743110 0001 023344444442 12456888888888776643221 11
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
...++.|+..| .+++..++..|+.+|..+..+-. ...+...+.+|.|.+.+....+...++.|+.++..|+.....
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 23466666544 56777899999999999986411 223334577888888754444567788888888888863321
Q ss_pred CchhcH--HhHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--cHhhH-----HhHHHHHHhhcCCCChhhHHHHH
Q 000201 650 LFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQGV-----KLVLPSLLKGLEDKAWRTKQSSV 716 (1866)
Q Consensus 650 ~~~p~v--~~llp~ll~~~~D~~~----~VR~~a~~al~~i~~~l--~~~~v-----~~llp~L~~~L~~~~w~~r~~a~ 716 (1866)
.-...+ ...+|.|...+.+.++ .+++.+..++..+...+ .+... ...+|.|++.|.+.+..++..|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 112222 3688999998887654 59999999999987632 22221 34789999999999999999999
Q ss_pred HHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 717 QLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 717 ~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
.+|.+++.+.+++..... ...+|.|..++.+.++++|..|+++|..+...-
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999976655432211 368899999999999999999999999999753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=99.42 Aligned_cols=254 Identities=12% Similarity=0.112 Sum_probs=165.6
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
+...|...|.+++|.+|+||+..|..+....+..-... .. .+.+--+|-.|+-+|.+++..+++..+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~---------~~-~N~DLAvRLLCVLALDRFGDYVSDqVVA-- 242 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IR-VDSKLFSKIYEILVTDKFNDFVDDRTVA-- 242 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC---------CC-CCTTHHHHHHHHHHHBCCBBCSSSSCBC--
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee---------cc-ccHHHHHHHHHHHHhccccccccCeeee--
Confidence 77788888999999999999999999988754321111 01 1124556666777777777666543221
Q ss_pred HHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
-||+ |.++|+.. .+-.+ + -.++-.+...+....|++|..+.-.+..+...+ .-+
T Consensus 243 -------------PVRETaAQtLGaL--~hLp~-e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-------~~L 297 (800)
T 3oc3_A 243 -------------PVRDAAAYLLSRI--YPLIG-P--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-------EDK 297 (800)
T ss_dssp -------------HHHHHHHHHHHHH--TTTSC-S--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-------CCH
T ss_pred -------------ehHHHHHHHHHHH--HhCCh-h--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-------HHH
Confidence 2442 33333332 11111 1 233444445557788999998887777773322 127
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCH-HHHHHHHHHHHHHHHHhChh-HHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV-YFE 932 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~-~~R~~a~~~L~~l~~~~g~~-~l~ 932 (1866)
+.+++.+...|.|++.+||..|+.+|--++ .++.++.++..+++.|.+.++- .-....++.|+.++..-... ..+
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp 374 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPP 374 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCS
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccCh
Confidence 889999999999999999999999988877 5567888899888888753221 12234445566665533211 224
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHh-hccCCChHHHHHHHHHHH
Q 000201 933 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLADENESVRDAALGAGH 999 (1866)
Q Consensus 933 ~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~-~l~d~~~~VR~~a~~al~ 999 (1866)
.++|.+...+.++-+.||.+++.++..+. . ..++..+++ .+-+++++|+..+.+.+.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~--------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS--E--------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC--C--------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH--h--------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 78888999999999999999988887665 1 223333333 345788999988887765
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.21 E-value=8e-05 Score=78.82 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=160.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHhh----cccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000201 974 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1049 (1866)
Q Consensus 974 ~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~----~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~ 1049 (1866)
..+..+...+.|.++.++..++.++..+.+.. ....++.++|.+.+...++|.++-..|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 35666788889999999999999999998874 334567789999999999999999999999999874322
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1050 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1050 ~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
++.+.+..+..++.....+.+...+..|.+.++.+-.. ...+.+...+.+
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHH
Confidence 12233445566666566788889999999999988222 234566777777
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
.+.+++..++.+|..++.++....+++ ++..++.-+...+++.++.++.-++..+.+++..--++.+.+.+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 788999999999999999998876654 6777777777788888999999999998887644222333333344444444
Q ss_pred Hhh-cCCcHHHHHHHHHH
Q 000201 1209 TAL-CDSILEVRESAGLA 1225 (1866)
Q Consensus 1209 ~~L-~d~~~~vr~~A~~a 1225 (1866)
... -...|.+|..|...
T Consensus 238 ~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HGGGCSSCHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHH
Confidence 444 46678888877543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=92.64 Aligned_cols=175 Identities=18% Similarity=0.139 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHhhhCc-chhhhcchHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH--hHHHHHHHH
Q 000201 590 GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 665 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g~-~~l~~~~ii~~L~~-~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~--~llp~ll~~ 665 (1866)
..|..|+..|..++..... ..+...+.+|.+.. .+.+ .++..|+.|+.+++.++..-+. ....+. ..+|.|+.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 4677788888887775431 11223456777777 7765 4678999999999999865332 222222 578888888
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcH--hhH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhH
Q 000201 666 FS-DQVVAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 739 (1866)
Q Consensus 666 ~~-D~~~~VR~~a~~al~~i~~~l~~--~~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~ 739 (1866)
+. +++..+|+.|.+++..++...++ ..+ ...+|.|...|.+++..+|..|+.+|++++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 56899999999999999875443 223 35789999999999999999999999999988665432211 37889
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.|+.+|.++++.||..|+.+|+.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999865
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.003 Score=78.68 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~-~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..+.++.|.+.+.++.-...||.|..+|..+.+....... ..-++.|...++++ .|..
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg--~~~l~~li~~L~~d~~D~e------------------- 77 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG--IQAMEHLIHVLQTDRSDSE------------------- 77 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH--HHTHHHHHHHHHSCTTCHH-------------------
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh--hhhHHHHHHHHhcccccHH-------------------
Confidence 5678889999998888889999999999999886532221 12245555555432 2221
Q ss_pred chhcHHhHHHHHHHHcC-CCCHH--------HHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHH
Q 000201 651 FEPYVIQMLPLLLVAFS-DQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 721 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~-D~~~~--------VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~ 721 (1866)
.+..++..++..+. |+++. ..+.+.+-...+.+. +.-++.|+..|++.+..+|..++++|..
T Consensus 78 ---~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 78 ---IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp ---HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 12233333333222 11110 111112222222211 3467888999999999999999999999
Q ss_pred HHhhChhhHHhh---hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH------HhHHHHHHHhhCCCCh----
Q 000201 722 MAYCAPQQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPND---- 788 (1866)
Q Consensus 722 l~~~~~~~~~~~---l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i------~~lv~~L~~~l~d~~~---- 788 (1866)
++.+.+.....+ -|.-++.|+.+|.|++..+|..+.-.|..+++. ++++ +..++.|.+.+.....
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Gg 226 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKIVAFENAFERLLDIITEEGNSDGG 226 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHTGGGSH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHHHHHhccHHHHHHHHHhcCCCccc
Confidence 999988865543 357889999999999999999999999999863 4444 3456777777654332
Q ss_pred -hHHHHHHHHHhc-cccc-----cCCcchhhhHHHHHHHhhcCCCHHHHH--H---HHHHHHHHhhhcCCC-----cchh
Q 000201 789 -HTKYSLDILLQT-TFVN-----TVDAPSLALLVPIVHRGLRERSAETKK--K---AAQIVGNMCSLVTEP-----KDMI 851 (1866)
Q Consensus 789 -~vr~al~~L~~~-~~~~-----~~~~~~l~~l~p~L~~~l~d~~~~vr~--~---a~~~l~~l~~~l~~~-----~~l~ 851 (1866)
-+..|+..+... .+.. .......+.+.|.+...-....|..++ . +.+++..++..-+.. .+-.
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~ 306 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA 306 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 244666655541 1100 000011222222221110112232222 1 334444444321110 0001
Q ss_pred hhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcCC--C-----------ChhhHHHHHHHhcccCCCHHHHHHHH
Q 000201 852 PYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGE--E-----------NFPDLVSWLLDALKSDNSNVERSGAA 916 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g~--~-----------~~~~l~~~L~~~L~~~~~~~~R~~a~ 916 (1866)
-+-..+++.+.+++..+ ...+|..|..+++.++..... + ..+.++..|+..+.+......|.+++
T Consensus 307 ~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~ 386 (651)
T 3grl_A 307 MFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386 (651)
T ss_dssp HHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHH
Confidence 12223566666666544 567999999999998864321 0 12345665666666666677898888
Q ss_pred HHHHHHHH
Q 000201 917 QGLSEVLA 924 (1866)
Q Consensus 917 ~~L~~l~~ 924 (1866)
.++..+..
T Consensus 387 ~cl~ay~~ 394 (651)
T 3grl_A 387 YCFQCFLY 394 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88876654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=86.51 Aligned_cols=277 Identities=10% Similarity=0.055 Sum_probs=151.0
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
.+++.+++++..++...|+...-.+..+++. . +++--.++.+.+-+++|++.+| -|+..+... .+......+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I-----~~~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQI-----TDSTMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCTTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcC-----CCHHHHHHH
Confidence 6777788999999999999999999998876 2 3344678889999999999998 578877663 223456788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
.+.+.+.+.|+++.||+.|+-+...++.. .++ ....+++.+.+++.|.++-|...|..++..+... +...+..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~k 213 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSK 213 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHH
Confidence 99999999999999999999888887762 222 2345778888899999999987666666666542 1112333
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 974 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~ 974 (1866)
+++.+.+. .-.++......+..++.++..-..+.-..+++.+...+++.++.|--.+..++-.+...... .+..
T Consensus 214 Lv~~l~~~--~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~~~ 287 (355)
T 3tjz_B 214 MISKFTRH--GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----ELAP 287 (355)
T ss_dssp HHHHHHSS--CCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------
T ss_pred HHHHHhcC--CCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HHHH
Confidence 44433221 01112122222222222222110112245666667777888888887777777766553222 2233
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHH
Q 000201 975 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1033 (1866)
Q Consensus 975 il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~ 1033 (1866)
.+..+...+..+++++|..+++.+..+....+ ..+...-..+++.+.|+|-.++.-++
T Consensus 288 a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 288 AVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHccCCcHhHHHHHH
Confidence 44555666777888999999999888877654 34444556677777777766665443
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0057 Score=65.01 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=159.3
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh----cHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQL----SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l----~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
..+..+...+.|.++.|+..+..++..+.+.. ....++.++|.+++.+.+++-++-.-|+.+|+.+.++.|-.- .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-K 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-H
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-H
Confidence 46677888899999999999999999999984 445679999999999999999999999999999999865332 2
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
.+..+...+.....+.++-++..+...++.+ +... ....++..+...+..++..++ .++..+.++... ..|...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~-S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS-SADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG-CSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc-cCCHHHH
Confidence 3457778888889999999999999999998 3222 234556666666677777777 466666653221 2233456
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHh-cCCCHhHHHHHHH
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAAR 878 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l-~d~~~~vR~~a~~ 878 (1866)
..++..+...++..++.++..|..++..+.+. .-+..+.+-+-.+...+..+. -.+.|.+|..|-.
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF-PLLENVKIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 77777888888899999999999999998873 122333333444555555554 4566777766543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0004 Score=81.85 Aligned_cols=314 Identities=10% Similarity=0.075 Sum_probs=159.4
Q ss_pred HHHHHHHHcCCCCHHHHH---HHHHHHHHHHH--hhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 658 MLPLLLVAFSDQVVAVRE---AAECAARAMMS--QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~---~a~~al~~i~~--~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
++.- ...|.++..+.|+ .....+..+.. .++......+++.+++.+.+++...|+..-..+..++.. +++
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e--- 101 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED--- 101 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC---
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH---
Confidence 4444 2466776444443 22333332222 233334577899999999999999999877777776665 222
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l 811 (1866)
.+ -++..+.+=++|+++-+|..|.++|+.+.. ...++.+.+.+.+++.|+++++|. |+-..... ........
T Consensus 102 ~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL---~~~~pe~v 174 (355)
T 3tjz_B 102 VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHL---LKCSFDVV 174 (355)
T ss_dssp GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---TTTCHHHH
T ss_pred HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---hccCHHHH
Confidence 12 456777888999999999999999998852 234588899999999999999994 33332221 11222234
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
..+++.+...+.|+++-+..+|..++..+... + ...+..+++.+... .-.++-.+-...+.++.+...-.++.
T Consensus 175 ~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~--d----~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~~~~ 247 (355)
T 3tjz_B 175 KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN--D----RLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDEDGSR 247 (355)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh--c----hHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccchhh
Confidence 56778888889999999999888888887752 2 11223334333221 01123333333444333332211122
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
-..+++.+...+++ .+..+.-+++..+-.+.. .+...+...++.+...+.++++++|-.++..+..+....+..+..+
T Consensus 248 ~~~~~~~l~~~L~~-~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~ 325 (355)
T 3tjz_B 248 DSPLFDFIESCLRN-KHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC 325 (355)
T ss_dssp ---------CCCCC-SSHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH
Confidence 34566767666664 445577777777654433 2222233334445555778899999999998888888777655443
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHH
Q 000201 972 LQQVLPAILDGLADENESVRDAALG 996 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~ 996 (1866)
-.-+..+++|++..++.-|+.
T Consensus 326 ----n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 326 ----NLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -------------------------
T ss_pred ----HHHHHHHccCCcHhHHHHHHH
Confidence 334566778888777655543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-06 Score=83.73 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=77.0
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
...++.+...+.|+++.||..+.+++..+.. . . +|.|.+.|++++|.+|..++..|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456677778889999999988887765422 1 1 4788888899999999999999887653 2
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
..++.+...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 456777888889999999999999998862 2346667777777766666
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=6.6e-06 Score=91.97 Aligned_cols=188 Identities=19% Similarity=0.159 Sum_probs=111.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhH
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 658 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~l 658 (1866)
++..+..++++.+|+.++..+ ++.. +..+++ +.++.+|..+... ++.
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l-------~~~~---------l~~L~~-D~~~~VR~~aA~~-------L~~--------- 100 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYS-------PVEA---------LTPLIR-DSDEVVRRAVAYR-------LPR--------- 100 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS-------CGGG---------GGGGTT-CSSHHHHHHHHTT-------SCS---------
T ss_pred HHHHHhcCCCHHHHHHHHHhC-------CHHH---------HHHHcc-CcCHHHHHHHHHH-------CCH---------
Confidence 345566788889999988753 1111 122233 3467777766542 221
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+.+...++|++..||..++..+ +. +.+...++|++|.+|.+++..+ + .
T Consensus 101 -~~L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~----------~ 148 (244)
T 1lrv_A 101 -EQLSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------P----------P 148 (244)
T ss_dssp -GGGGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------C----------G
T ss_pred -HHHHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------C----------H
Confidence 2345567888888988877742 21 1234446788888888877521 1 1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHH-HHHHHhccccccCCcchhhhHHHH
Q 000201 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 739 ~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+.+..+++|+++.||.++...+ .. +.+...+.|+++.||.+ ...+ -.+.
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l----------------~~~~ 198 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL----------------RGDD 198 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC----------------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC----------------CHHH
Confidence 1344677888888888887751 11 23345667887777743 2221 0134
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
+...++|.+|.||..+...++ .+.+..+ .|++|.||..+...||
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 555677888888887665422 1334444 7888888877766554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.50 E-value=8.2e-05 Score=75.45 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 696 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~l 696 (1866)
++.+...++++ ++..|..|+.+++.+ + .+ .+|.+...+.|+++.||..+.+++..+.. +..
T Consensus 14 ~~~l~~~L~~~-~~~vR~~A~~~L~~~----~---~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a 74 (131)
T 1te4_A 14 LVPRGSHMADE-NKWVRRDVSTALSRM----G---DE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------ERA 74 (131)
T ss_dssp -------CCSS-CCCSSSSCCSSTTSC----S---ST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHh----C---ch----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 44555555553 456676666654322 1 11 14788889999999999999999887642 346
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~ 762 (1866)
+|.+...+++++|.+|..++..|+.+.. +..++.|...++|+++.||..|.++|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7888888899999999999999998752 3567788889999999999999999865
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0023 Score=69.07 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=123.4
Q ss_pred chHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhh
Q 000201 534 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 613 (1866)
Q Consensus 534 ~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~ 613 (1866)
+|+..+..+.+.+..-..-|+.---.+.. +.. ....+.+..++..|.+++..++|.-|+..|+.. . . .
T Consensus 34 ~~~~~~~~~~~~~~~~~~gf~~~~~~a~~-~~~---~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~--~ 101 (240)
T 3l9t_A 34 SMKQYVARLEKDFSLIEHGFKEEEQRALT-DYK---SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----K--D 101 (240)
T ss_dssp CHHHHHHHHHHHHTC-----CHHHHHHHH-HHH---HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----T--S
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHH-HHH---hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----C--c
Confidence 46666666666655433233222111111 111 112456667888999999899999999977765 2 1 2
Q ss_pred cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH-hh
Q 000201 614 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QG 692 (1866)
Q Consensus 614 ~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~-~~ 692 (1866)
.++++++...+.++++|.+|+.+..+|+.++...+. ...++.+.....|++..||..|.+.+......... ..
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d 175 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN 175 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC
Confidence 357888888555567899999999999999874332 13677888899999999999999887543322111 12
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
...++|.+.....|+++.+|++....|..+++..|+-+.
T Consensus 176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 176 PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 366888888888999999999999999999998876543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.099 Score=65.29 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC---hhHHHHHHHHHhccccccCCc---------c-----
Q 000201 747 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDA---------P----- 809 (1866)
Q Consensus 747 D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~---~~vr~al~~L~~~~~~~~~~~---------~----- 809 (1866)
.+-.+=|.+|+.+|+.+++..+...-..-+|.|+..+.+.. +-++.++++|.........+. .
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQ 112 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHH
Confidence 44566799999999999987665444555677777665433 336677887765211111000 0
Q ss_pred h------hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh---HhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 810 S------LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 810 ~------l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~---~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
. -..-++.|...+++.+..+|..+.+++..++.. .+...... .+.-++.|..+|.|+...+|..+...|
T Consensus 113 ~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~--r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 113 FTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ--LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc--CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 0 123478888899999999999999999999973 32222222 235788899999999999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCC---HHHHHHHHHHHHHHHHH
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~---~~~R~~a~~~L~~l~~~ 925 (1866)
..++..-.+- .|+..++.|++.+..+.. ..+...++..+..+++.
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 9998854321 355667777777765432 22334445555555554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.26 Score=64.82 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=58.6
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh-HHHhhhccCCChHHHHHHHHHHHHHHhhccchh--
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-- 771 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv-~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-- 771 (1866)
.++| +++.|.++++..|.+|+.+|+.++......-.-.-..++ +.+..+|.|++.+||.+|.++|+.++..-+...
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 446688889999999999999998643222111122444 456678999999999999999999985432211
Q ss_pred --H-HhHHHHHHHhh
Q 000201 772 --I-ASLVPTLLMGL 783 (1866)
Q Consensus 772 --i-~~lv~~L~~~l 783 (1866)
+ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 1 33566555543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.35 E-value=5.4e-05 Score=84.64 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=21.0
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHH
Q 000201 664 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 717 (1866)
Q Consensus 664 ~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~ 717 (1866)
.+..|+++.||..++..+ +. +.+...++|++|.+|..++.
T Consensus 81 ~L~~D~~~~VR~~aA~~L-------~~-------~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 81 PLIRDSDEVVRRAVAYRL-------PR-------EQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CS-------GGGGGTTTCSCHHHHHHHHH
T ss_pred HHccCcCHHHHHHHHHHC-------CH-------HHHHHHHcCCCHHHHHHHHH
Confidence 345666666666665431 11 22344455666666666554
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0022 Score=71.07 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=117.1
Q ss_pred hHHHHHHhhcCCCCh--hhHHHHHHHHHHHHhhChhhHHh-hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-ch
Q 000201 695 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 770 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w--~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~ 770 (1866)
..+|.+++.|.+++. .++..|+..|..++...+..-.. .-...+|.|+++|...++++|..|+++|..++..-. +.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 357888888888877 78888888888888766432111 113677999999999999999999999999986321 11
Q ss_pred -hH--HhHHHHHHHhhC-CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh-------c---------CCCHHH
Q 000201 771 -EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 829 (1866)
Q Consensus 771 -~i--~~lv~~L~~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l-------~---------d~~~~v 829 (1866)
.+ ..-+|.|++.+. .++..++ .+...|......+.........-+|.|...+ . ..+.++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457899999887 4566666 3444444432222211222233355554432 1 136699
Q ss_pred HHHHHHHHHHHhhhcCC-Ccchhh---hHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhh
Q 000201 830 KKKAAQIVGNMCSLVTE-PKDMIP---YIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 830 r~~a~~~l~~l~~~l~~-~~~l~~---~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~ 886 (1866)
+..|..++.+++..-.+ .+.+.. .++.++..+.....+ .+...++-++.+|..|...
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999862101 111211 123333333333322 3446677777777766543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.21 Score=59.49 Aligned_cols=297 Identities=11% Similarity=0.070 Sum_probs=180.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000201 1477 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1477 ~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~ 1556 (1866)
.|+...|..|+..|..+.+..+ .....-+..++....+. +.+||..|+..|..+++. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4578899999999999887662 23344456677888774 788999999988877643 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHH
Q 000201 1557 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS-VSSAVKIRVYSVLKD 1635 (1866)
Q Consensus 1557 ~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~-l~~~~~~~i~~~L~~ 1635 (1866)
++|+..+..-+..+-.+|-.+...+| ...+..++..+..++..+|+.+++-|+.-+...+.. +.+..-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888899999988876544 234555666665568899999999999888877655 454555556666666
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhc------cCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHH
Q 000201 1636 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL------ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 1709 (1866)
Q Consensus 1636 ~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~------~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~ 1709 (1866)
.+.+-...--.....+|+.+-..-......++++.+..+ ++..+...-...+.++...+-......-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 676555444444556665543222222233333333332 11112211122344555555554443322223222
Q ss_pred HHHHHHhhhcCCCh-----hHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCC-----------------H
Q 000201 1710 ILDRLKSSLKDEKF-----PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS-----------------S 1767 (1866)
Q Consensus 1710 ~~~~l~~~~~~~~~-----~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----------------~ 1767 (1866)
+..-+...++.=.. ..+---..+++.+..+++..+ .....+..+...+...+.-+. .
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 33333333332111 245556777777777776321 112344445555554433222 2
Q ss_pred HHHHHHHHHHHHHHhhCcchh
Q 000201 1768 EVRRRALSALKSVAKANPSAI 1788 (1866)
Q Consensus 1768 ~vR~~a~~~l~~~a~~~~~~~ 1788 (1866)
..-...++++.++++..|+.+
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 234778899999999988655
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0084 Score=64.72 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=125.0
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh
Q 000201 1582 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661 (1866)
Q Consensus 1582 ~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~ 1661 (1866)
+....|+..+.+.+..-+.+.+. ..++...+..... .+.++.+......++.+.+|-.|+.+||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 45667777777766543322222 1223333333222 456666667777888899999999999988 3 22
Q ss_pred hHHHHHHHHHHh-ccCCCCcchhhhHHHHHHHHHh-hCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhh
Q 000201 1662 GQLADLLQELLN-LASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1662 ~~~~~~l~~ll~-~~~~~~~~~r~~~~~~L~~~l~-~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
. ..++.+.. ......|.++.....++...+. ..|+. .++.+..-+.|+++-+|+.|+.+.......
T Consensus 102 ~---~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 102 K---EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp H---HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred H---HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 2 33444444 3457789889888888888886 77653 346677888999999999999987542221
Q ss_pred hhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHh
Q 000201 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 1793 (1866)
Q Consensus 1740 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~ 1793 (1866)
|........+++.+....+|++.-||++....|+-+++.+|+.|+..+.
T Consensus 170 -----~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 170 -----PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp -----TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 1111244667777777888999999999999999999999998877664
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.031 Score=61.79 Aligned_cols=124 Identities=17% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh--
Q 000201 658 MLPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-- 729 (1866)
Q Consensus 658 llp~ll~~~~D~~~--~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-- 729 (1866)
.+|.+...+..+++ .++..++.++..++..-++. .+ ...+|.|++.|.+++..++..|+.+|..++...++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777776666 88888888888877543221 22 346899999999999999999999999999865543
Q ss_pred -HHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhh
Q 000201 730 -LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGL 783 (1866)
Q Consensus 730 -~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l 783 (1866)
+.. ...+|.|+++|. ..+.++++.|+.+|..++..-.+. .++.-+|.|...+
T Consensus 89 ~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 89 EVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred HHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence 222 367899999997 468999999999999987543332 2244567776544
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=3 Score=49.23 Aligned_cols=248 Identities=12% Similarity=0.096 Sum_probs=144.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 000201 1590 DLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQ 1669 (1866)
Q Consensus 1590 ~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~ 1669 (1866)
++++..+......+-..+.-+.+++-+-...+. ++++..+.+...+.+-.+|...++.|+..+....+ .+...++
T Consensus 29 ~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl----~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~ 103 (386)
T 3o2t_A 29 DLLNQAALITNDSKITVLKQVQELIINKDPTLL----DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIA 103 (386)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGG----GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHhhhccChHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344443332234677888888887665444333 44455555555677888999999999888875442 3444444
Q ss_pred HHHhccCCCCcchhhhHHHHHHHHHhh-------CCCc-ccCCcchHH---HHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1670 ELLNLASSPSWAARHGSVLVFATFLRH-------NPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1670 ~ll~~~~~~~~~~r~~~~~~L~~~l~~-------~p~~-~~~~~~~~~---~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
.+...+.+++..+...++.+...+++. .|.. ......|+. +-..+...+.+++..+|-.++.-+..++.
T Consensus 104 ~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 104 NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 443334445544444555555555432 2210 000134544 34556777888889999999988888776
Q ss_pred hhhhc--CC----------------CCh---------hhHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCcchhh
Q 000201 1739 HQIQS--GP----------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIM 1789 (1866)
Q Consensus 1739 ~~~~~--~~----------------~~~---------~~~~~~l~~l~~~l~~--~~~~vR~~a~~~l~~~a~~~~~~~~ 1789 (1866)
.+... ++ .+. ..-..+|..++..+.+ -++-.-.+++..+..+++..|...
T Consensus 184 ~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~- 262 (386)
T 3o2t_A 184 TLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM- 262 (386)
T ss_dssp HTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH-
T ss_pred HhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH-
Confidence 54321 11 011 1223456666666654 234444667788888888887643
Q ss_pred hhHhhHHHHHHhhh--------ccCcchhhhhHHHHHHHhhcccccchhHHHHHHHhhhhhhhhh
Q 000201 1790 VHVALFGPALAECL--------KDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 1846 (1866)
Q Consensus 1790 ~~l~~l~p~l~~~~--------~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1846 (1866)
..++|.+..-. +-....|+...-..+.+++|-+...+..+.+..+|..+-+++-
T Consensus 263 ---~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~ 324 (386)
T 3o2t_A 263 ---SEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQA 324 (386)
T ss_dssp ---HHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHH
T ss_pred ---HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHH
Confidence 44444444321 1112336677778899999988776677788888755555444
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=94.37 E-value=1.1 Score=47.15 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
...+++.+.+.+.. ..|+.|...|. ...|...+- ..++.++.+.+ .+-+|...-...+.....|.....=.
T Consensus 9 lq~yf~~It~a~~~----~~r~~aL~sL~---~D~gL~~Ll-Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 9 LQLYFDKILSMIKS----DMKDIAIECLE---KESGLQQLV-PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHHHHHTS----TTHHHHHHHHH---HCSSCTTTH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHh----HHHHHHHHHHh---cCCChhhhH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 44555555555554 34665555543 444544432 12333444333 33345555555666677777777667
Q ss_pred chhcHHhHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhhcH--hhH-HhHHHHHHhhcCC--CChhhHHHHHHHHHHH
Q 000201 651 FEPYVIQMLPLLLVAFSDQ---VVAVREAAECAARAMMSQLSA--QGV-KLVLPSLLKGLED--KAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~---~~~VR~~a~~al~~i~~~l~~--~~v-~~llp~L~~~L~~--~~w~~r~~a~~~L~~l 722 (1866)
++||+.+++|.++.|+-.. ...+|+-|+..+..|+...+. .++ +.+...+.+.+.| .+..+.+||+..|.++
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 8999999999999886322 228999999999999998765 233 6778888887765 4689999999998887
Q ss_pred Hh
Q 000201 723 AY 724 (1866)
Q Consensus 723 ~~ 724 (1866)
..
T Consensus 161 G~ 162 (196)
T 4atg_A 161 SK 162 (196)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.31 E-value=12 Score=44.80 Aligned_cols=262 Identities=12% Similarity=0.084 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChh
Q 000201 1522 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAG 1601 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~ 1601 (1866)
+...|..|-+.+....+..|. .-.+-+...+..+.|.+..||..|.+.|..++.- ..+..+..-|.+.+++.++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhccchH
Confidence 678899999988887765543 3345667788888999999999999999999765 66778888888888887777
Q ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh----HHHHHHHHHH-hccC
Q 000201 1602 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG----QLADLLQELL-NLAS 1676 (1866)
Q Consensus 1602 vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~----~~~~~l~~ll-~~~~ 1676 (1866)
-...+-++|..++..-.. ..+..++..+. ..++.+|..+...|..-...++.+ ++..++...+ +.+.
T Consensus 116 E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~----~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~ 187 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAK----GTLGGLFSQIL----QGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE 187 (507)
T ss_dssp HHHHHHHHHHHHHHHCHH----HHHHHHHHHHH----HSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcChH----HHHHHHHHHHc----ccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhc
Confidence 777777788888764322 23333333333 347888888777776544444433 2333333222 2222
Q ss_pred CCCcchhhhHHHHHHHHHhhCCCcccC-CcchHHHHHHHHhhhc------CCChhHHHHHHHHhHHHHhhhhhcCCCChh
Q 000201 1677 SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLK------DEKFPLREASTKALGRLLLHQIQSGPANTT 1749 (1866)
Q Consensus 1677 ~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~~~~~l~~~~~------~~~~~~r~~a~~alg~ll~~~~~~~~~~~~ 1749 (1866)
+.+ .-. ...+..+++... +.. .....++++++..... ..++..-+--+.|+...+.+.... ..+.+
T Consensus 188 DVT--~~E--F~L~m~lL~~lk--l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~-v~Stk 260 (507)
T 3u0r_A 188 DVT--GEE--FVLFMKILSGLK--SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKN-VHSTR 260 (507)
T ss_dssp SCC--HHH--HHHHHHHHHTSG--GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTT-BCCHH
T ss_pred ccc--HHH--HHHHHHHHHhcc--cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccC-CChHH
Confidence 222 111 112334443321 111 1234566776665422 234455555566666665554332 33445
Q ss_pred hHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc
Q 000201 1750 VVVDILASVVSALHDDSS-----EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 1805 (1866)
Q Consensus 1750 ~~~~~l~~l~~~l~~~~~-----~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~ 1805 (1866)
++.-+...++..+++=.. +.|---+.++--++.++.+ .+.....+|.+|.....
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~--~e~a~~~l~~iy~~L~~ 319 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGD--MEKLETNLRKLFDKLLE 319 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCC--CTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCc--cchHHHHHHHHHHHHHH
Confidence 555555566655543211 2455455555555555542 22334556666655543
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=94.03 E-value=2.1 Score=45.12 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC---CHhHHHHHHHHHHHHHhhcCCCC---hhhHHHHH
Q 000201 826 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWL 899 (1866)
Q Consensus 826 ~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~---~~~vR~~a~~aL~~l~~~~g~~~---~~~l~~~L 899 (1866)
+...-....++...+.. +..-.+.||+.+++|.+..++-.. ...+|+.|+..++.++...|..+ -+.+...+
T Consensus 59 ~l~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence 34444445556666655 344578899999999999987532 22799999999999999998753 23445555
Q ss_pred HHhcccC-CCHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHH
Q 000201 900 LDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRN 941 (1866)
Q Consensus 900 ~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~l~~ll-~~l~~~ 941 (1866)
...+.++ .+....-||+.+|+. +|.+....++ |.+...
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~~~ 176 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAEEY 176 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHHHH
Confidence 5555443 455566688777754 5666555443 555443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=1.5 Score=60.19 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhc-------HhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 669 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 669 ~~~~VR~~a~~al~~i~~~l~-------~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
.++.+|+++.-+++.++.... .+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 467889999888887776432 23356677777777777778888899999998876 2333444
Q ss_pred hhhcc-------CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC--hhHH-HHHHHHHhccccccCCcchh
Q 000201 742 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 742 ~~~L~-------D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
.+++. +...+||.+|++||..+.... | ..+-+.+++...|.. ..+| .|+..|..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 44442 224689999999999997532 2 223344555554443 3567 566666542 2333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
..+..+....-.+.+..|+......+.+++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3333444444456778888777777777766
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=19 Score=42.44 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=65.8
Q ss_pred HHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHH
Q 000201 1328 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 1407 (1866)
Q Consensus 1328 r~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~ 1407 (1866)
+-..+.-+..++..-+..-++.+++.++....+.+..+|...+.++...|... .++.+.++..|..+++|.++.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHH
Confidence 33333344444443345567888999998888888999999999999888642 34567888899999999999999
Q ss_pred HHHHHHHHHHH
Q 000201 1408 AAAWEALSRVV 1418 (1866)
Q Consensus 1408 ~~A~~aL~~l~ 1418 (1866)
..+..|.+.+.
T Consensus 118 K~~I~~~tslY 128 (386)
T 3o2t_A 118 KKAILTMTQLY 128 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887764
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.14 E-value=26 Score=38.84 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChH
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 751 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~ 751 (1866)
..+-....-+..++-.-.+.-++.+++.+++.-.+++-.+|+-.+.+|...+...+ ...+.+++.+..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHH
Confidence 34444444444443333445557888888887677888889988888887775443 34456777788888999999
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCC--hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHH
Q 000201 752 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828 (1866)
Q Consensus 752 VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~ 828 (1866)
|.+.+..|...+-.. .++.+ .+++ +....+.+.+ ..+-..+.+.+...+..
T Consensus 106 V~K~~I~~~~~iY~~------------~l~~i~~~~~~~~~~~~~W~~m--------------~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYKN------------GLQYLCSLMEPGDSAEQAWNIL--------------SLIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHTTSSSCCHHHHHHHHHH--------------HHHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHhcCCCCcchHHHHHHHH--------------HHHHHHHHHHHccCCcc
Confidence 998888887766432 11111 2222 1122222222 22344455556667788
Q ss_pred HHHHHHHHHHHHhh
Q 000201 829 TKKKAAQIVGNMCS 842 (1866)
Q Consensus 829 vr~~a~~~l~~l~~ 842 (1866)
+|..+.+.+..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888877664
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=90.11 E-value=15 Score=48.27 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=151.6
Q ss_pred ccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcC
Q 000201 1464 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD--RFPWQVKSAILSTLSIIIRKGG 1541 (1866)
Q Consensus 1464 l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~--~~~~~vr~~al~~L~~L~~~~~ 1541 (1866)
+..++|+...|+-+.+......+..++..++.-. +.+..-.++.++.-+...+.. -.+..-..+++.+|..+++-+-
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3457888888998999988888999999998765 311111223333333444544 3345566788888887776542
Q ss_pred --CCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------c---CC---------------------------
Q 000201 1542 --IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL------S---TR--------------------------- 1583 (1866)
Q Consensus 1542 --~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~------~---~~--------------------------- 1583 (1866)
..+++++..++..++..++-.+..--..+...+..+... . ..
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 346778888888888888766776666777777666331 0 00
Q ss_pred ---------------------hhhHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC
Q 000201 1584 ---------------------VDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1584 ---------------------~~~~l~~L~~~l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~ 1641 (1866)
+..++..++..+++ .+..+......++..++.++ +++..+.++..+.+.+.++.
T Consensus 496 ~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~l----S~~if~~~l~k~~~fv~~n~ 571 (799)
T 1vsy_4 496 RVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESM----DDKIFNYFASLLNRNFWSND 571 (799)
T ss_dssp CCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTB----CHHHHHHHHHHHHHHHHSCS
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHhh
Confidence 11233344444442 33344444444444444444 44444555554444333321
Q ss_pred -HHHHHHHHHH----HHHHHhhcChhHHHHHHHHHHh-------cc-----CC-C---CcchhhhHHHHHHHHHhhCCCc
Q 000201 1642 -DHVRVSAASI----LGIMSQCMEDGQLADLLQELLN-------LA-----SS-P---SWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1642 -~~vr~~aa~~----l~~L~~~~~~~~~~~~l~~ll~-------~~-----~~-~---~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
.......+.+ ++.+++..|. .+..+++.+.. .. .. + ....-.+.+..|..++..++..
T Consensus 572 ~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~ 650 (799)
T 1vsy_4 572 SFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHES 650 (799)
T ss_dssp CCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHH
Confidence 1223334444 6777777787 66655555432 11 11 0 1123355667888999998887
Q ss_pred ccCCcchHHHHHHHHhhhc-CCChhHHHHHHHHhHHHHhh
Q 000201 1701 ISMSPLFLSILDRLKSSLK-DEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~-~~~~~~r~~a~~alg~ll~~ 1739 (1866)
++ ++.+++...+..... ..+..+-..+..-+..++..
T Consensus 651 lL--~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 651 LL--EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp GG--TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred HH--ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 76 467777777766653 33444334344444444443
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=89.56 E-value=20 Score=47.03 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=146.5
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC---CChHHHHHHHHHHHHHHhhccc
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D---~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
|+.++|.++.++.+++-.+...+..+|..++.-.|......+|.++..+...|.. .++.=-.++.++|..++..+..
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667888888888888888888889999999988733333445666666666655 4455455677888777755443
Q ss_pred -h----hHHhHHHHHHHhhCCCChhHH--HHHHHHHhccccccCC-c----chh---hhHHHHHHHhh---c--------
Q 000201 770 -P----EIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVD-A----PSL---ALLVPIVHRGL---R-------- 823 (1866)
Q Consensus 770 -~----~i~~lv~~L~~~l~d~~~~vr--~al~~L~~~~~~~~~~-~----~~l---~~l~p~L~~~l---~-------- 823 (1866)
+ .+..++..++..+ |+++--+ .++..+......-.+. . ..+ ....|.+...+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 2 2233333333333 5554322 3444444333321111 0 010 01111111111 0
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 824 --ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 824 --d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
|...+.+ . ++.. + ..+..++..++..+..++.. ....+-.....++..+...+.++.+..++..+.
T Consensus 496 ~~d~~~~~~-----~---~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 496 RVDDELLNN-----A---FKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLN 564 (799)
T ss_dssp CCCTTHHHH-----H---HHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHH
T ss_pred cccHHHHHH-----H---HHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111100 0 1110 1 12344455556666666653 333343455667777777888887777777777
Q ss_pred HhcccCCCHHHHHHHHHH----HHHHHHHhChhHHHHHHHHHHHHhcc----C------ChhH--Hh----HHHHHHHHh
Q 000201 901 DALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------RASV--RD----GYLTLFKYL 960 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~----L~~l~~~~g~~~l~~ll~~l~~~l~~----~------~~~v--R~----~al~~l~~L 960 (1866)
+.+.+............- +..+++.-+. .++.++|.+...+.. . ..++ ++ -.+.+++.+
T Consensus 565 ~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 565 RNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 655432211011111111 3444555455 677777777644321 1 1111 22 346677788
Q ss_pred hhhhchhhHhHHHHHHHHHHhhc
Q 000201 961 PRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 961 ~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
....|..+-+|-++++..+...+
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHH
Confidence 88888888889888887666555
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.71 E-value=33 Score=38.03 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChh
Q 000201 1326 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 1405 (1866)
Q Consensus 1326 ~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~ 1405 (1866)
+.+-..+.-...++..-++..++.+++.++....+.+..+|...+.++...|... ..+.+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 3444444455554444455678999999999888888999999999998888543 356788899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000201 1406 TVAAAWEALSRVVA 1419 (1866)
Q Consensus 1406 v~~~A~~aL~~l~~ 1419 (1866)
|...+..+.+.+..
T Consensus 106 V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 106 VIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887754
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=83.51 E-value=1.1e+02 Score=42.06 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhhCcchhhhcchHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHhCcC----chhcHHhHHHHHHHHcC
Q 000201 595 AAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRL----FEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 595 A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~---~~~~~~r~~al~al~~L~~~l~~~----~~p~v~~llp~ll~~~~ 667 (1866)
|++.|.......-+ ..+++..+...+.. .+++..|+.++.+++.+....-.. -..++..+...+...+.
T Consensus 375 a~~~l~~~~~~~~P----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~ 450 (1056)
T 1lsh_A 375 ATQIVASTLSNQQA----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD 450 (1056)
T ss_dssp HHHHHHHHHHTCCC----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCC----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh
Confidence 66666654432211 12345555555543 245678889999999998764211 12345556666666666
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCC-------CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHH
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-------KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 740 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~-------~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~ 740 (1866)
..+..-+..+..+|+.+.. +..++.+...+.. ..-++|..|+.+|..++...|+... +.
T Consensus 451 ~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~-------~i 516 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ-------EI 516 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH-------HH
T ss_pred cCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH-------HH
Confidence 6666666666777776643 2345555555532 2358899999999988876555433 33
Q ss_pred Hhhhc--cCCChHHHHHHHHHHH
Q 000201 741 LTEVL--TDTHPKVQSAGQTALQ 761 (1866)
Q Consensus 741 l~~~L--~D~~~~VR~aA~~aL~ 761 (1866)
+++.. .+.+++||.+|+..|-
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHH
Confidence 44555 4567999999998774
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
Probab=82.69 E-value=60 Score=38.32 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhcCCCCCCchHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 1555 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~--~L~~~~~~~~~~~lp~L~~~l 1555 (1866)
+++.-...-..-+.+++...++..+......++..+.+.+.+. +.+|-..|+.... .++.-+.......+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 3443333445668888888877888877777777777777764 6777777776543 122222222222345555555
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhccCC
Q 000201 1556 IKCLQDS-TRTVRSSAALALGKLSALSTR 1583 (1866)
Q Consensus 1556 ~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~ 1583 (1866)
.+..... +..||..+..++..++.+.+.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 5554444 899999999999988776554
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=82.24 E-value=76 Score=36.28 Aligned_cols=193 Identities=20% Similarity=0.227 Sum_probs=105.9
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc-CCC-----C---hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEE-----N---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~-g~~-----~---~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
..++..|...+..-..+.|+.+...++.+.+.- |.. | -++++..|+....+.+. +-..|.+.+.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di-------Al~~G~mLRe 149 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI-------ALNCGIMLRE 149 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT-------HHHHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh-------HhHHHHHHHH
Confidence 346677777777778999999999998888743 322 1 24566666665543321 1222333332
Q ss_pred hC-hhHH------HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 000201 926 LG-TVYF------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 998 (1866)
Q Consensus 926 ~g-~~~l------~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al 998 (1866)
+- .+.+ .+.+-.+.+..+.++.++-..|+..|..+-..-..-...|+.
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~------------------------- 204 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLE------------------------- 204 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-------------------------
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHH-------------------------
Confidence 21 1111 112223444555555555544444444332211110000100
Q ss_pred HHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhh
Q 000201 999 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1078 (1866)
Q Consensus 999 ~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~ 1078 (1866)
.+ .+.+...+...+..+|+-.|+.|++++|+++-.-+. ...+...++.
T Consensus 205 ----~n-----yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N---------------------~~vM~~Yis~-- 252 (341)
T 1upk_A 205 ----QH-----YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN---------------------FTIMTKYISK-- 252 (341)
T ss_dssp ----HT-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG---------------------HHHHHHHTTC--
T ss_pred ----Hh-----HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH---------------------HHHHHHHhCC--
Confidence 01 122334445567788999999999999999743111 0112222221
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcC
Q 000201 1079 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1112 (1866)
Q Consensus 1079 ~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~ 1112 (1866)
.+.+..++..+.|.+..++-.|.++.+-++.|.
T Consensus 253 -~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 253 -PENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 234555556689999999999999999999763
|
| >2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 | Back alignment and structure |
|---|
Probab=80.39 E-value=16 Score=39.82 Aligned_cols=139 Identities=7% Similarity=0.008 Sum_probs=88.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
.++..|..++..+.|..|+.-+....+... .+-++.+...+...++|........+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 455666666666677766666654332221 123445556666677887766544444444332 2224
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
+.+.+.....+++.-+|+.|..++ +..........+++.+...+.|+++-+|++....|..++...|+.+..
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 566778888999999999887654 222222234566776666888999999999999999988887776544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1866 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-77 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-69 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-41 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-25 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-16 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 5e-39 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 9e-27 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-24 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-16 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 6e-14 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 3e-35 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-18 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-14 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-05 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-32 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-19 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-04 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 6e-23 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-21 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 6e-21 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 8e-19 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-18 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-13 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-13 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 1e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 9e-10 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 2e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 2e-17 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 2e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 7e-11 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 9e-08 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 9e-17 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-14 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 7e-11 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 6e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 2e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 9e-12 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 4e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 3e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 3e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.003 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 5e-11 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 8e-10 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 2e-05 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 5e-04 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 3e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.002 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 0.004 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 0.002 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 279 bits (713), Expect = 3e-77
Identities = 154/1100 (14%), Positives = 362/1100 (32%), Gaps = 77/1100 (7%)
Query: 697 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 756 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 816 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 867 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 926
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 927 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 983
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 984 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1044 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1103
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1104 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1160
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1161 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1218
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1219 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 1278
A L L K D +S A +K + T + +
Sbjct: 533 TSEALLVTQQLVKVIRPL--------------DQPSSFDATPYIKDLF----TCTIKRLK 574
Query: 1279 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK--EAAE 1336
+ + +G + G L L L L + ++ + ++ A
Sbjct: 575 AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAG 634
Query: 1337 TVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLI 1396
+ + + V L + NQ +++ + + KN L + + +
Sbjct: 635 SPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 694
Query: 1397 VLLSDSDSTTVAAAW--------EALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 1448
L V+ + ++ + + I ++R +
Sbjct: 695 PPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 754
Query: 1449 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 1508
+++ G + L + +A +Q+ + + + + KE
Sbjct: 755 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAV 814
Query: 1509 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRS 1568
+ + + R ++ L +L + + +L++ ++ + V+S
Sbjct: 815 VGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDL---SGQLELKSVILEAFSSPSEEVKS 871
Query: 1569 SAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628
+A+ ALG +S + + + +L + S + +L +LK ++ A
Sbjct: 872 AASYALGSISVGN--LPEYLPFVLQEIT-SQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928
Query: 1629 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVL 1688
++++L ++ R A LG ++ LL L S S AR V
Sbjct: 929 IWALLLKHCECAEEGTRNVVAECLGKLTL----IDPETLLPRLKGYLISGSSYARSSVVT 984
Query: 1689 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 1748
+ +P I PL + + +L+D +R + ++
Sbjct: 985 AVKFTISDHPQPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK-------P 1035
Query: 1749 TVVVDILASVVSALHDDSSE 1768
+++ D+L +V+ L++++
Sbjct: 1036 SLIRDLLDTVLPHLYNETKV 1055
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 253 bits (647), Expect = 5e-69
Identities = 156/1107 (14%), Positives = 358/1107 (32%), Gaps = 92/1107 (8%)
Query: 500 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 558
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 559 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 613
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 614 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 670
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 671 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 729
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 730 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 785
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 786 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 845
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 846 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 905
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 906 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 966 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1019
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1079
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1080 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1140 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1197
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1198 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 1254
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 1255 SDTALDGLKQIL-----SVRTTAVLPHILPKLVHLPLSAFNA-------HALGALAEVAG 1302
AL + + +L L S A +++
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALT 804
Query: 1303 PGLNFHLGTILPALLSAMGDDDMD--VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD 1360
++ + + + ++ LA + V ID G L S +L+
Sbjct: 805 RACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS 864
Query: 1361 NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 1420
++ +++Y +G + ++ S +L +++S
Sbjct: 865 PSEEVKSAASYALG--------SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 1421 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 1480
Y++ I + + + G + LLP LISGS+
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSS 976
Query: 1481 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 1540
R + I + + + G ++ + D V+ L T +
Sbjct: 977 YARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSAAHNK 1034
Query: 1541 GIALKPFLPQLQTTFIKCLQDSTRTVR 1567
++ L + + +R
Sbjct: 1035 PSLIRDLLDTVLPHLYNETKVRKELIR 1061
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 164 bits (414), Expect = 4e-41
Identities = 140/999 (14%), Positives = 306/999 (30%), Gaps = 103/999 (10%)
Query: 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 916
++ + K+L D EV+++A + +G L+ + E +V L + SD + R ++
Sbjct: 46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQL-RDISS 104
Query: 917 QGLSEVLAAL-----GTVYFEHILPDIIRNCSHQRA-----SVRDGYLTLFKYLPRSLGV 966
GL V+ L G+ ++ I + A SV+ L + + G
Sbjct: 105 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 164
Query: 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDN 1025
N+ +L +L L +VR + A LV L+ + + ND+
Sbjct: 165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS 224
Query: 1026 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1085
++ ++ + + + G+ L +++
Sbjct: 225 MSTTRTYIQCIAAISRQAGHRIGEYL----------------------------EKIIPL 256
Query: 1086 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1145
+ + +R+ + +++ V PK + + ++N + L +
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDED 316
Query: 1146 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205
+ G+ S RR + + S L F + P
Sbjct: 317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA--AAKCLDAVVSTRHEMLPEFYKTVSP 374
Query: 1206 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 1265
+ + + V+ A+ +L K P + E T L+
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT------MLQSQ 428
Query: 1266 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 1325
+ A+ + K + + L L V L H+ ++P ++ ++ D
Sbjct: 429 VPNIVKALHKQMKEK--SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486
Query: 1326 DVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379
+ ++ + V++LV ++ VGD I + + K
Sbjct: 487 SSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV 546
Query: 1380 SKLYLVDEAPNMISTLIVLLS---------DSDSTTVAAAWEALSRVVASVPKEVQPSYI 1430
+ + + + L + D D A + +++ ++ +
Sbjct: 547 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLP 606
Query: 1431 KVIRDAISTSRDKERRKKKGGPIL-IPGFCLPKALQPLLPIFLQGLI----SGSAELREQ 1485
++ + +++ R + I G L L+P+L + L L+
Sbjct: 607 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLG 666
Query: 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 1545
L LI+ S+ I + + V +S L+ + + +L
Sbjct: 667 TLSALDILIKNYSDSLTAAM-IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 725
Query: 1546 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSL--------- 1595
+ I ++ + SA L + ++ + DLL L
Sbjct: 726 KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQST 785
Query: 1596 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 1655
++ +I + + + K + V + V D +R+ A LG +
Sbjct: 786 ALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNS---RSTDSIRLLALLSLGEV 842
Query: 1656 SQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 1715
++ +L +L SSPS + + + N P L +
Sbjct: 843 GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--EYLPFVLQEIT--- 897
Query: 1716 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 1775
+ + +L ++ G V +I A ++ R
Sbjct: 898 -----SQPKRQYLLLHSLKEIISSASVVGLKP--YVENIWALLLKHCECAEEGTRNVVAE 950
Query: 1776 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 1814
L + +P ++ P L L GS+ R +
Sbjct: 951 CLGKLTLIDPETLL-------PRLKGYLISGSSYARSSV 982
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 3e-25
Identities = 144/1049 (13%), Positives = 297/1049 (28%), Gaps = 139/1049 (13%)
Query: 237 TGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEV 296
H +L L + R R I L H++ + L L N+
Sbjct: 167 VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG--NIVFVDLIEHLLSELSKNDS 224
Query: 297 ASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPE-----KSVA 351
S + + I + + E +E L + + + +
Sbjct: 225 MS-----------TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI 273
Query: 352 EAAEDIWDRYGYDFGTDYSGLF----KALSHSNYNVRLAAAEALATALDEYPDSIQGSLS 407
+A E R + S + K L++ E + D
Sbjct: 274 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSD 333
Query: 408 TLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADT 465
+S D+ D W R+ A L + T + +
Sbjct: 334 DEYS----------DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKER 383
Query: 466 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY--------------- 510
+V+ + +A + ++ + L P + +
Sbjct: 384 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 443
Query: 511 -DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 569
R+ L L + V+ + + LS L +
Sbjct: 444 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 503
Query: 570 DEAPTLVSRLLDQ-------LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 622
+ +P + + + Y A +VK A +
Sbjct: 504 NHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 563
Query: 623 GL---------ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD---QV 670
L A + +E A+ + LG + L + L + ++
Sbjct: 564 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRL 623
Query: 671 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--- 727
V+ A + L + +P L L K ++ L +
Sbjct: 624 TTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 682
Query: 728 -QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786
+ + +P L ++ + T L +V + S++ L+ + P
Sbjct: 683 TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP 742
Query: 787 --NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRERSAETKKKAAQIVGNMCSL 843
++ Q V + L+ + + +A T K++ + +
Sbjct: 743 LLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAA 802
Query: 844 VTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 901
+T PK+ +G + +VK +R +A ++G + + +L S +L+
Sbjct: 803 LTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGEVGHHIDLSGQLELKSVILE 860
Query: 902 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 961
A S + V +S A+ L + LP +++ + Q +L + +
Sbjct: 861 AFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIIS 915
Query: 962 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1021
+ V + Y++ + +L E R+ L T LP L + G
Sbjct: 916 SASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISG- 974
Query: 1022 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1081
+ R S V + + D + + I
Sbjct: 975 ---SSYARSSVVTAVKFTI----------------SDHPQPIDPLLKNCIGDF------- 1008
Query: 1082 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQV 1141
L L D L+VR+ AL + + N P +++++ ++ L + R+V
Sbjct: 1009 -LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREV 1063
Query: 1142 A------GRALGELVRK-------------LGERVLPSIIPILSRGLKDPSASRRQGVCI 1182
G +RK L + + + GLKD + +
Sbjct: 1064 EMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLT-FL 1122
Query: 1183 GLSEVMASAGKSQLLSFMDELIPTIRTAL 1211
L +++ S +L +D L+ +R
Sbjct: 1123 MLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.4 bits (207), Expect = 1e-16
Identities = 71/405 (17%), Positives = 127/405 (31%), Gaps = 43/405 (10%)
Query: 374 KALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 433
S S + ++A + + + +I+D+ N + R
Sbjct: 779 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV----KNSRSTDSIRLL 834
Query: 434 IALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLF 493
L+L + + + ++ A + + +V+ A I + + + +
Sbjct: 835 ALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKSAASYALGSISVGNLPEYLPFVL 893
Query: 494 PIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAV 553
+ + +Y L+ I + A L P V + LL E
Sbjct: 894 QEITS------QPKRQYLLLHSLKEIISSASVVGL---KPYVENIWALLLKHCECAEEGT 944
Query: 554 QRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSL 611
+ V+ CL L + L + S R + + I L
Sbjct: 945 RNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL 1000
Query: 612 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-------- 663
K I L+ L D + RR AL+ F L + +LP L
Sbjct: 1001 LKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKE 1058
Query: 664 ----VAFS------DQVVAVREAA-ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712
V D + +R+AA EC + S L + L + GL+D + K
Sbjct: 1059 LIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-YDIK 1117
Query: 713 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 757
+ +L ++ P + Q L ++V L T T K S Q
Sbjct: 1118 MLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKVKANSVKQ 1161
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (394), Expect = 5e-39
Identities = 117/915 (12%), Positives = 278/915 (30%), Gaps = 101/915 (11%)
Query: 735 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 792 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 848
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 900
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 957
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 958 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1012
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1072
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1073 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1132
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1133 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1192
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1193 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 1249
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 1250 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN 1306
Q + D + + SV P + L+ + +N +
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE----------D 578
Query: 1307 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-NQASI 1365
L +L L S + + ++ + +++++ +
Sbjct: 579 KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 638
Query: 1366 RRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423
+ L+ + + N+++ + + D +++ L + + +
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698
Query: 1424 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 1483
V+P + +PI L +
Sbjct: 699 HVKP-----------------------------------CIADFMPILGTNLNPEFISVC 723
Query: 1484 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGI 1542
A +GE+ + ++ ++ + L+ II P + T+ +
Sbjct: 724 NNATWAIGEISIQMGIE-MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 782
Query: 1543 ALKPFLPQLQTTFIKCLQDSTRTV-RSSAALALGKLSALSTRVDPLVGDLLSSLQV--SD 1599
+ P L Q + L++ + SA + + +S ++ D + S
Sbjct: 783 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM--ISVNPSGVIQDFIFFCDAVASW 840
Query: 1600 AGIREAILTALKGVL 1614
++ + +L
Sbjct: 841 INPKDDLRDMFCKIL 855
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 9e-27
Identities = 119/816 (14%), Positives = 246/816 (30%), Gaps = 78/816 (9%)
Query: 529 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 584
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 585 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 644
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 645 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 696
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 756
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 757 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 875
P HR + +D I E+ +R
Sbjct: 335 PRFHR------------------SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKC 376
Query: 876 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS--GAAQGLSEVLAALGTVYFEH 933
+A A+ L +E P ++ L + L V+ S ++E Y
Sbjct: 377 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436
Query: 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGLADENESVRD 992
++P +I+ S ++A VR + Q + YL+ ++ +L + D N+ V++
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496
Query: 993 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1052
AA A L E T +P L + D + + + ++ +L D + +A + G L
Sbjct: 497 AACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555
Query: 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1112
+ + + +L L V + + V++ V
Sbjct: 556 KPEYIQMLMPPLIQ-KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 614
Query: 1113 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP-----SIIPILSR 1167
KTL + M + VA L L LG + +I+ ++ +
Sbjct: 615 QKTLAQAMLNNAQPDQYEAP--DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ 672
Query: 1168 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1227
++D RQ L + A + + + +P + T L + V +A A
Sbjct: 673 CMQDKMPEVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG 731
Query: 1228 TLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 1284
+ G++ I ++ L+ + T T L+
Sbjct: 732 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT---------------------- 769
Query: 1285 PLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 1320
A +G L V + L + +++
Sbjct: 770 ------AITIGRLGYVCPQEVAPMLQQFIRPWCTSL 799
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (271), Expect = 2e-24
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 330 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 387
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 388 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 446
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 447 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 498
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 499 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 544
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 545 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 603
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 604 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 663
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 664 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 775
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 776 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 833
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 884
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 885 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 928
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 929 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 987
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 988 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/288 (14%), Positives = 102/288 (35%), Gaps = 8/288 (2%)
Query: 1548 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 1607
L Q+ +K Q T++ + L +L+ + L+ +L+ L+ D R
Sbjct: 10 LQQI-LQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLI-FVLTKLKSEDEPTRSLSG 67
Query: 1608 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 1667
LK +K ++ + V + S + + +R + ++ ++ E DL
Sbjct: 68 LILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL 127
Query: 1668 LQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---FLSILDRLKSSLKDEKFP 1724
L +L +L S + G+ + + L ++ + K
Sbjct: 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 187
Query: 1725 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 1784
+R + + + ++ + Q+ + + ++ + D+ EVR+ AL + +
Sbjct: 188 IRSHAVACVNQFIISRTQALMLH---IDSFTENLFALAGDEEPEVRKNVCRALVMLLEVR 244
Query: 1785 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 1832
++ H+ + + +D V L A + + + +
Sbjct: 245 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 292
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.1 bits (183), Expect = 6e-14
Identities = 109/796 (13%), Positives = 239/796 (30%), Gaps = 97/796 (12%)
Query: 274 PSYQAAIGSALNELCLGLQPNEVASALHGVYTK----DVHVRMACLNAVKCIPAVSTRSL 329
P +A +G + + + L + + D + A++ I S L
Sbjct: 102 PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 161
Query: 330 PENI------EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYD--------FGTDYSGLFKA 375
++ + + A +++ + LF
Sbjct: 162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL 221
Query: 376 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 435
VR AL L+ D + + + ++ +NV A +
Sbjct: 222 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENV-ALEACEFWLT 280
Query: 436 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI 495
LA + + LP ++ L+ + ++ D+ +L G + D+ D+ + P
Sbjct: 281 LAEQPICKDVLVRHLPKLIPVLV-NGMKYSDIDI---ILLKGDVEEDETIPDSEQDIRPR 336
Query: 496 FENYLNK---------KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL 546
F + D++ ++ + + A D + D+LL +
Sbjct: 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHI 396
Query: 547 ----------------NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 590
+ + C+ ++ + + P L+ Q + K
Sbjct: 397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI-----QCLSDKKAL 451
Query: 591 ERRGAAFGLAGVVKGFGISSLKKYGIAA--TLREGLADRNSAKRREGALLAFECLCEKLG 648
R + L+ Y L + + D N + +E A AF L E+
Sbjct: 452 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEAC 510
Query: 649 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 708
PY+ +L L+ AFS A + + K +L +
Sbjct: 511 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 570
Query: 709 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----------------THPKV 752
W + + L + C + +P V P
Sbjct: 571 WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ 630
Query: 753 QSAGQTALQQV-------------GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 799
A V G++ + ++++ + + D + S LL
Sbjct: 631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 690
Query: 800 TTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857
P +A +PI+ L A +G + + +M PYI ++
Sbjct: 691 DLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS--IQMGIEMQPYIPMV 748
Query: 858 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 912
L ++ +++ P + A IG L +E + +L++ N E+
Sbjct: 749 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 808
Query: 913 SGAAQGLSEVLAALGTVYFEHILP--DIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQ 969
A +G+ +++ + + + D + + + + +RD + + +G ++
Sbjct: 809 DSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWR 868
Query: 970 NYLQQVLPAILDGLAD 985
+ Q + + LA
Sbjct: 869 RFSDQFPLPLKERLAA 884
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 144 bits (362), Expect = 3e-35
Identities = 126/962 (13%), Positives = 286/962 (29%), Gaps = 165/962 (17%)
Query: 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 793
+ L + ++ +T L++ + N L D N +
Sbjct: 3 TAEFAQLLENSILSPDQNIRLTSETQLKK----LSNDNFLQFAGLSSQVLIDENTKLEGR 58
Query: 794 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853
+ L T N + + R + + S E K QI N +
Sbjct: 59 ILAAL--TLKNELVSKDSVKTQQFAQRWITQVSPEAK---NQIKTNALTA---------- 103
Query: 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVER 912
LV P + + AA+ I ++ + +P+L+ ++D ++ +
Sbjct: 104 -----------LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 913 SGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSL 964
+ L + + +IL I++ S VR L +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212
Query: 965 GVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---- 1018
+ + ++ + + E+ V+ AA G ++ Y T P + A+
Sbjct: 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTI 272
Query: 1019 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1078
+ + N ++ +VE + + + +
Sbjct: 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-------------------------- 306
Query: 1079 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSS 1135
Q+ L + + ++K+++P L+N L
Sbjct: 307 ------------------FPQSPLQSYNFAL----SSIKDVVPNLLNLLTRQNEDPEDDD 344
Query: 1136 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1195
AG L + G +L ++ + + + + R+ + +M K Q
Sbjct: 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404
Query: 1196 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 1255
++ + +P+I + D L+V+E+ + D + ++
Sbjct: 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI--------ADSVAESIDPQQHLPGVV 456
Query: 1256 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA 1315
L GL+ V T I + + LAE + ++
Sbjct: 457 QACLIGLQDHPKVATNCSWTII--------------NLVEQLAEATPSPIYNFYPALVDG 502
Query: 1316 LLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGY 1375
L+ A D + + + +A + + E +++ + ++ +
Sbjct: 503 LIGAANRIDNEFNA--RASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1376 FYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 1435
L + N+++ L ++ S S+ A + + +++
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM------------GLFFRLLEK 608
Query: 1436 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIE 1495
S + + G K L+ P L+ L + + A+G I
Sbjct: 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS-ITAVGFIADIS 667
Query: 1496 VTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554
+ E+ + + + L ++I + ++K A+LS I G P+L +
Sbjct: 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 1555 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV- 1613
+ A K+ EA+L A G+
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKV-------------------------LEAVLDAYVGIV 762
Query: 1614 --LKHAGKSVSSAVKI---RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 1668
L +++ V + V +D + +D +A ++G ++ DG +
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
Query: 1669 QE 1670
+
Sbjct: 823 GQ 824
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.7 bits (223), Expect = 1e-18
Identities = 85/763 (11%), Positives = 224/763 (29%), Gaps = 83/763 (10%)
Query: 569 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 628
+ + + L L+ + AA +A + + + + +
Sbjct: 90 PEAKNQIKTNALTALVSIEPRI-ANAAAQLIAAIAD-IELPHGAWPELMKIMVDNTGAEQ 147
Query: 629 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREAAECAARA 683
+ +LLA +CE + V +L+ ++ AVR AA A
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207
Query: 684 MMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738
+ + ++ + + + + + ++ L + + + + +
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 739 PKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797
LT + + KV S + + +IA + + S+ +
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICE--EEIDIAYELAQFPQSPLQSYNFALSSIKDV 325
Query: 798 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857
+ P+L L+ + + A +
Sbjct: 326 V----------PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVL---- 371
Query: 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERS 913
V++ + R A A GS++ G + + +L+ + + V+ +
Sbjct: 372 -EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKET 430
Query: 914 GAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965
A + + ++ +++ + + L + L +
Sbjct: 431 T-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATP 489
Query: 966 VQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN 1023
N+ ++ ++ + R +A A +VE+ T I
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS-----IST 544
Query: 1024 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1083
++ + + L S + L A ++ V +
Sbjct: 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA----DMLMG 600
Query: 1084 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1143
++ S + + + A+ K ++ + L+ +L S A
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAV 660
Query: 1144 RALGELVRKLGERVLPS---IIPILSRGLKDPSASR--RQGVCIGLSEVMASAGKSQLLS 1198
+ ++ L E ++ +L++ + +P+A R + V + +AS + +
Sbjct: 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGD-IASNIGADFIP 719
Query: 1199 FMDELIPTIRTAL-----------CDSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTL 1245
++++++ A D ++V E+ A+ + +A+ V T+
Sbjct: 720 YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI 779
Query: 1246 LHALE----------DDQTSDTALDGLKQILSVRTTAVLPHIL 1278
+ +D TS A+ + I ++ +
Sbjct: 780 FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 2e-14
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 372 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 427
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 428 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 487
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 488 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 547
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 548 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 607
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 666
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 667 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 721
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 722 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 769
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 770 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 815
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 875
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 876 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 931
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 932 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 991
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 992 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 1e-05
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 120 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 179
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 180 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 235
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 236 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 295
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 296 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 355
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 356 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 415
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 416 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 471
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 472 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 522
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 523 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 577
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 578 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 632
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 633 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 692
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 751
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 752 VQSAGQTALQQVG---SVIKNPEIASLV 776
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (339), Expect = 2e-32
Identities = 125/908 (13%), Positives = 272/908 (29%), Gaps = 115/908 (12%)
Query: 345 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 401
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 402 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 450
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 451 PVIMTFLISRALADTNADVRGRMLNAGIMIIDK--------HGRDNVSLLFPIFENYLNK 502
P ++ L++ TN + M + + I +D + + + K
Sbjct: 127 PELIPQLVANV---TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK 183
Query: 503 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 562
+ ++ + + + H ++ + + P V+ A L
Sbjct: 184 EEPSNNVKLAATNALLNSLEFTKAN-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLV 242
Query: 563 PLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 621
+M + L +++ K A G+ + + ++ +A
Sbjct: 243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEAS 298
Query: 622 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAA 677
E E + + Y++ +L L + +AA
Sbjct: 299 EAAEQ----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348
Query: 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 736
+ + V VLP + + +++ WR + ++V G + P QL + +
Sbjct: 349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTK 791
+P L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVAS 468
Query: 792 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 851
A L +K + +
Sbjct: 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRS 526
Query: 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 911
L+ VK D P V+ + L + + S + N
Sbjct: 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDL 580
Query: 912 RSGAAQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLG 965
+S L VL + I ++ + + V++ L L LG
Sbjct: 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 966 VQFQNYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAV 1017
+F Y++ P + GL + E V AA+G A + + + LLL +
Sbjct: 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700
Query: 1018 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077
+ N + ++ + + GD+ + G + + ++ L +
Sbjct: 701 GN--ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQA 742
Query: 1078 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN----- 1125
+ +V + Y D +R++ L + IV N + + P +
Sbjct: 743 SQAQVDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFI 801
Query: 1126 TLISSLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQG 1179
I+ + A +G+L G+ VL P I +L+ G + + +
Sbjct: 802 DHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTL 861
Query: 1180 VCIGLSEV 1187
E+
Sbjct: 862 ARWATKEL 869
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.9 bits (229), Expect = 2e-19
Identities = 103/830 (12%), Positives = 259/830 (31%), Gaps = 106/830 (12%)
Query: 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQL 718
+L + A++C A +++ ++P L+ + + K+S+++
Sbjct: 94 YVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153
Query: 719 LGAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--------N 769
+G + P+QL +I+ + + + P A + + ++
Sbjct: 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA-ATNALLNSLEFTKANFDKE 212
Query: 770 PEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERS 826
E ++ + P+ + + L + ++ L I ++
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI 272
Query: 827 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886
E + + N+C D + + E + P + A A+ L+
Sbjct: 273 DEVALQGIEFWSNVC-------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV-- 323
Query: 887 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 946
++ + D+ N A L + H+LP I + +
Sbjct: 324 ---PILTQTLTKQDENDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD 379
Query: 947 ASVRDGYLTLFK-YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005
RD + F L Q + + Q +P +++ + D + VRD A + E
Sbjct: 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 1006 ATTSLP-LLLPAVEDGIFN---DNWRIRQSSVELLGDLLFKV--AGTSGKALLEGGSDDE 1059
++ + L + + R+ + L A E +
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 1060 GASTEAHGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1117
+S E + ++E R +N + ++ Y ++ + + + + L+
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 1118 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG--------ERVLPSIIPILSRGL 1169
+++ + + +S ++ + + L ++RK+ + V+ S++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 1170 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFST 1228
+ + + + L +M+ P + L + + +V +A
Sbjct: 620 GSGGVQEDALMAVS---TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGD 676
Query: 1229 LFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 1285
L ++ DE++ LL L ++ SV+ +
Sbjct: 677 LCRALQSNIIPFCDEVMQLLLENLGNENVHR----------SVKPQIL------------ 714
Query: 1286 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 1345
G +A G +L +L L A + + E
Sbjct: 715 ------SVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNEL-----RE 763
Query: 1346 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 1405
+ +++G+ +Q ++ + ++S + + D D T
Sbjct: 764 SCLEAYTGIVQGLKGDQENVHPDVMLVQPRV------------EFILSFIDHIAGDEDHT 811
Query: 1406 --TVAAAWEALSRVVASVPKEV------QPSYIKVIRDAISTSRDKERRK 1447
VA A + + + K+V +P +++ + S+ + +
Sbjct: 812 DGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRR-SKTNKAKT 860
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-04
Identities = 42/354 (11%), Positives = 96/354 (27%), Gaps = 86/354 (24%)
Query: 1472 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILS 1531
L+ +S E A ++ L+ + + L
Sbjct: 7 LEKTVSPDRLELEAA------------QKFLERAAV----------------ENLPTFLV 38
Query: 1532 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK-LSALSTRVDPLVGD 1590
LS ++ G + R +A L + L++ +
Sbjct: 39 ELSRVLANPGNSQ--------------------VARVAAGLQIKNSLTSKDPDIKAQYQQ 78
Query: 1591 LLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAA 1649
++ + ++ +L L + + SA+
Sbjct: 79 RWLAIDANARREVKNYVLHTL----------------------------GTETYRPSSAS 110
Query: 1650 SILG-IMSQCMEDGQLADLLQELLNLASSP--SWAARHGSVLVFATFLRHNPSAISMSPL 1706
+ I + Q +L+ +L+ ++P + + ++ + +
Sbjct: 111 QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ-LQDK 169
Query: 1707 FLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 1764
IL + ++ E ++ A+T AL L ++ + I+ V A
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLN-SLEFTKANFDKESERHFIMQVVCEATQC 228
Query: 1765 DSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERC 1817
+ VR AL L + + ++ E +K V L
Sbjct: 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 6e-23
Identities = 97/665 (14%), Positives = 206/665 (30%), Gaps = 110/665 (16%)
Query: 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 756
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 757 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 811
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 871
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 872 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 930
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 931 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 990
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 991 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1037
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1038 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1096
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1097 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1155
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1156 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1215
+IIP + DP+ R ++ + G+
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT------------------ 517
Query: 1216 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 1275
++PT+L D + +VR
Sbjct: 518 -----------------------KHMLPTVLRMAGD------------PVANVRFNV--- 539
Query: 1276 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 1335
A +L + + + P L D D+DV+ A+EA
Sbjct: 540 ---------------AKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Query: 1336 ETVTL 1340
++L
Sbjct: 583 TVLSL 587
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.7 bits (244), Expect = 2e-21
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 677
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 736
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 796
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 797 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 856
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 916
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 917 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 973
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 974 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1032
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1091
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1092 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1151
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1152 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1210
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1211 LCDSILEVRESAGLAFSTL 1229
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (239), Expect = 6e-21
Identities = 101/665 (15%), Positives = 205/665 (30%), Gaps = 93/665 (13%)
Query: 1124 MNTLISSLASSSSERRQVAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCI 1182
+ LI L + + R + + L + LG ER ++P L+ + D V +
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-----VLL 66
Query: 1183 GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 1242
L+E QL +F + G + + ++
Sbjct: 67 ALAE--------QLGTFTTLVG-----------------------------GPEYVHCLL 89
Query: 1243 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 1302
P L ++T VR AV +L A++
Sbjct: 90 PPLESLATVEETV------------VRDKAV------------------ESLRAISHEHS 119
Query: 1303 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 1362
P +P + G D ++ A + L D+
Sbjct: 120 PSDL--EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422
+RR++A +G F K +L V +I L SD + A EA + +P
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1423 KEVQPSYIKVIRDAISTSRDKERRKK--KGGPILIPGFCLPKALQPLLPIFLQGLISGSA 1480
+E + + + + R L L+P F + A
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1481 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRK 1539
E+R A+ + E E S + ++ P I+ + D + + +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1540 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD 1599
G L L +K R S + ++ + L+ ++ + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1600 AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 1659
+R AI+ + + G ++ S+ + +R +A S L + +
Sbjct: 416 WRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 1660 -EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 1718
++ A ++ ++L ++ P++ R ++ +L +
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCGQDITTKHMLPTVLRMA 528
Query: 1719 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 1778
D +R K+L +I N+T+ ++ + D +V+ A AL
Sbjct: 529 GDPVANVRFNVAKSLQ-----KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 1779 SVAKA 1783
++ A
Sbjct: 584 VLSLA 588
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.2 bits (222), Expect = 8e-19
Identities = 74/545 (13%), Positives = 155/545 (28%), Gaps = 21/545 (3%)
Query: 1291 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 1350
L +A G +LP L + D+D + +LA++ TLV E V L
Sbjct: 31 IKKLSTIALALGVERT--RSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCL 88
Query: 1351 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410
+ L + +R + + ++ + + L T+ +A
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSA 146
Query: 1411 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK-KGGPILIPGFCLPKALQPLLP 1469
S V V+ + R+ S RR L ++P
Sbjct: 147 CGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIP 206
Query: 1470 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAI 1529
+F +R A + ++ ++ L+ V+P R + V
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 1530 LSTLSIIIRKGGIALK-PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLV 1588
+ + P L ++ + L + + ++
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 1589 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSA 1648
+ + ++ ++ A+ + + G+ GK + + ++ + +S
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 1649 ASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 1708
+ LL ++ LA W R + F
Sbjct: 387 LDC--VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF-----FD 439
Query: 1709 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 1767
L+ L + D + +REA+T L +L+ I+ V++ D +
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLV-----EKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 1768 EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 1827
R L + +++ I L P + D VR + +
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHML--PTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 1828 SEYIQ 1832
S
Sbjct: 553 STLQS 557
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 1e-18
Identities = 94/632 (14%), Positives = 188/632 (29%), Gaps = 67/632 (10%)
Query: 370 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 429
+ L L + + +RL + + L+T
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLST------------------------------------ 36
Query: 430 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDN 488
IALAL + R++ LP + + +V + G G +
Sbjct: 37 ----IALAL--GVERTRSELLPFLTDTI------YDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 489 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT 548
V L P E+ + EE VR+ V A++ + D + H V + +
Sbjct: 85 VHCLLPPLESLA----TVEETV--VRDKAVESLRAISHEHSPSDLEAH-FVPLVKRLAGG 137
Query: 549 PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 608
+ + S + + + L D RR AA L K +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 609 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS- 667
++K I +D + R E V+ L S
Sbjct: 198 DNVKSE-IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727
V + +A+ +++ + +L+K + R S A
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSAD 315
Query: 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 787
+ + + +I+P + E+++D + V+SA + + + ++ + L +
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 847
I + L+ + L E + + A + +
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435
Query: 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD 906
+ L LVD + +R A + L+ G+E ++ +L
Sbjct: 436 EFFDEK---LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 907 NSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965
N R ++ + G +H+LP ++R A+VR + + L
Sbjct: 493 NYLH-RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551
Query: 966 VQFQNYLQQVLPAILDGLADENESVRDAALGA 997
+V P + D++ V+ A A
Sbjct: 552 NS--TLQSEVKPILEKLTQDQDVDVKYFAQEA 581
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.3 bits (217), Expect = 3e-18
Identities = 89/624 (14%), Positives = 195/624 (31%), Gaps = 58/624 (9%)
Query: 1201 DELIP--TIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDT 1257
D L P + L + +++R ++ ST+ + G++ E++P L + D+
Sbjct: 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 66
Query: 1258 ALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL 1317
AL A LG + G ++ +LP L
Sbjct: 67 AL-------------------------------AEQLGTFTTLVG--GPEYVHCLLPPLE 93
Query: 1318 SAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYF 1376
S ++ V+ A E+ ++ +E+ L+K + G + + R S+ L
Sbjct: 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVC 153
Query: 1377 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 1436
Y + E + L SD AA L + + S I +
Sbjct: 154 YPRVSSAVKAE---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210
Query: 1437 ISTSRDKERRKKKGGPILIPGFCLPKA--LQPLLPIFLQGLISGSAELREQAALGLGELI 1494
+++ R + LP+ ++P Q S +R A EL
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270
Query: 1495 EVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII-IRKGGIALKPFLPQLQT 1553
+ + K ++P ++ D +A + Q+
Sbjct: 271 KAVGPEITKTDLVPA---FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327
Query: 1554 TFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 1613
+ + D+ + V+S+ A + LS + + + + L L E L + +
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 1614 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLN 1673
+ + + +L VR++ + +++ + + L L
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447
Query: 1674 -LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKA 1732
+A R + + + + +I+ ++ + D + R +
Sbjct: 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHA----TIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 1733 LGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 1792
+ L +L +V+ D + VR +L+ + ++
Sbjct: 504 INVLS-----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQ 556
Query: 1793 ALFGPALAECLKDGSTPVRLAAER 1816
+ P L + +D V+ A+
Sbjct: 557 SEVKPILEKLTQDQDVDVKYFAQE 580
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (175), Expect = 4e-13
Identities = 83/574 (14%), Positives = 197/574 (34%), Gaps = 29/574 (5%)
Query: 894 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 952
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 953 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1012
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA-----LLEGGSDDEGASTEAHG 1067
+ + +W ++S L + + ++ KA SDD A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1068 RAIIEVLGRDKRNEVLAALYMVRSDVSL--SVRQAALHVWKTIVANTPKTLKEIMPVLMN 1125
+ E + + V + + + S+++ L V + +++ ++M
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 1126 TLISSLASSSSERRQVAGRALGELVR-KLGERVLPSIIPILSRGLKDPSASRRQGVCIGL 1184
TL + S R + EL + E ++P +KD A R +
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 1185 SEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 1243
E + + + +++P I+ + D+ V+ + L G E +
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 1244 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN----------AHA 1293
L A D+ + L+ + + V + + L+ +
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 1294 LGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI-DEEGVESLVS 1352
+ LA G F + ++ + D ++ A + + E +++
Sbjct: 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483
Query: 1353 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412
++L GD R ++ + I + + +M+ T++ + D + +
Sbjct: 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT--TKHMLPTVLRMAGDPVANVRFNVAK 541
Query: 1413 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 1446
+L ++ + S +K I + ++ +D + +
Sbjct: 542 SLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 7e-13
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 383 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 438 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 497
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 498 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 557
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 558 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 616
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 676
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 677 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 733
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 792
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 793 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 912
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 913 SGAAQGLSEV 922
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 1e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 306 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 363
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 364 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 418
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 419 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 478
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 479 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 538
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 539 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 597
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 598 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 653
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 654 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 713
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 714 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 772
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 773 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 832
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 833 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 883
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 9e-10
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 241 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 294
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 295 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 351
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 352 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 405
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 406 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 465
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 466 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 525
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 526 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 585
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 645
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 646 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 704
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 705 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 10/192 (5%)
Query: 1386 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKE 1444
D++ I+ LI L + D + + LS + ++ + + + + D I D+
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEV 64
Query: 1445 RRK-KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 1503
+ P+ + LLP +R++A L + S L+
Sbjct: 65 LLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE 124
Query: 1504 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST 1563
+ PL++ + + +++ S+ + A+K L Q F D T
Sbjct: 125 AHFV----PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQY---FRNLCSDDT 177
Query: 1564 RTVRSSAALALG 1575
VR +AA LG
Sbjct: 178 PMVRRAAASKLG 189
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-05
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 12/190 (6%)
Query: 1631 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVF 1690
+VL D + ++D +R+++ L ++ + + L L
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQL 72
Query: 1691 ATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 1750
TF + L L L+S E+ +R+ + ++L + + +
Sbjct: 73 GTFTTLVGGPEYVHCL----LPPLESLATVEETVVRDKAVESLRAISHE------HSPSD 122
Query: 1751 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 1810
+ +V L R + L + P A D + V
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGL--FSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 1811 RLAAERCAVH 1820
R AA
Sbjct: 181 RRAAASKLGE 190
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.4 bits (225), Expect = 2e-19
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 870 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 914
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 915 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 970
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 971 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1023
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1024 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1076
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1077 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1136
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1137 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1196
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1197 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 1249
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.8 bits (208), Expect = 2e-17
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 345 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 401
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 402 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 454
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 455 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 513
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 514 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 567
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 568 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 627 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 687 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 745
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 746 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 785
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (200), Expect = 2e-16
Identities = 63/452 (13%), Positives = 144/452 (31%), Gaps = 33/452 (7%)
Query: 1313 LPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYL 1372
L +L D A++ E + + L L N R ++
Sbjct: 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANP--GNSQVARVAAGLQ 59
Query: 1373 IGYF-----------YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS- 1420
I Y+ L + A + ++ +++ ++A + ++ + +
Sbjct: 60 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAE 119
Query: 1421 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL------IPGFCLPKALQPLLPIFLQG 1474
+P P I + ++ E K+ + I L +L +QG
Sbjct: 120 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQG 179
Query: 1475 LIS--GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 1532
+ S ++ A L +E T KE ++ +V+ A L
Sbjct: 180 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 239
Query: 1533 LSIIIRKGGIALKPFLPQLQTT-FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 1591
L I+ ++ ++ I+ ++ V + + +
Sbjct: 240 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299
Query: 1592 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI 1651
+ + + AL+ ++ + + + + DD + +A
Sbjct: 300 AEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKAAGVC 350
Query: 1652 LGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 1711
L +++ C ED + +L + +P W R +V+ F L P + PL + +
Sbjct: 351 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAM 409
Query: 1712 DRLKSSLKDEKFPLREASTKALGRLLLHQIQS 1743
L +KD +R+ + +GR+ ++
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 7e-11
Identities = 65/492 (13%), Positives = 133/492 (27%), Gaps = 53/492 (10%)
Query: 1118 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRR 1177
E++ +L T+ S + A + L + L + +L+ A R
Sbjct: 1 ELITILEKTV-----SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVA--R 53
Query: 1178 QGVCIGLSEVMA---SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1234
+ + + K+Q + R + + +L+ +
Sbjct: 54 VAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE--------TYRP 105
Query: 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 1294
A + + +Q + + + + P+ + L A
Sbjct: 106 SSASQCVAGIACAEIPVNQWPELIPQLVANVTN-------PNSTEHMKESTLEAIGYICQ 158
Query: 1295 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 1354
E N L I+ + +++ + + + + +
Sbjct: 159 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 218
Query: 1355 LKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST----LIVLLSDSDSTTVAAA 1410
Q R + K LY M I +
Sbjct: 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 278
Query: 1411 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 1470
E S V E ++ P F ALQ L+PI
Sbjct: 279 IEFWSNVCDEEMDLAI--------------EASEAAEQGRPPEHTSKFYAKGALQYLVPI 324
Query: 1471 FLQGLISGSAELREQ--AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 1528
Q L + + + ++ ++P P I+ W+ + A
Sbjct: 325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384
Query: 1529 ILSTLSIIIRK-GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-------AL 1580
+ I+ LKP + Q T I+ ++D + VR +AA +G++
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 444
Query: 1581 STRVDPLVGDLL 1592
+ PL+ L+
Sbjct: 445 DVYLAPLLQCLI 456
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 9e-08
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 445 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 504
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 505 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 564
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 565 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 618
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 619 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 676
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 677 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 792
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 793 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 901
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.7 bits (159), Expect = 5e-11
Identities = 99/807 (12%), Positives = 244/807 (30%), Gaps = 109/807 (13%)
Query: 863 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 923 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967
++ F ++++ Q + + ++
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---------NKASLNI 201
Query: 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1027
+ L ++ D + + + G + Y + S PLL E + +
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK 261
Query: 1028 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE-VLAAL 1086
++ S EL+ + G + + + + + K + V +L
Sbjct: 262 VKSSIQELVQLYTTRYEDVFGPMI--------NEFIQITWNLLTSISNQPKYDILVSKSL 313
Query: 1087 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS------------SLASS 1134
+ + + + + T + + + + + S
Sbjct: 314 SFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSD 373
Query: 1135 SSERRQVAGRALGELVRKLGERVLPSIIP----ILSRGLKDPSASRRQGVCIGLSEVMAS 1190
+ RR+ L EL K V + + + + DPS + + +
Sbjct: 374 TDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA 433
Query: 1191 AGKS-------------QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 1237
+ ++ F + I T+ + +R A T
Sbjct: 434 INGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ 493
Query: 1238 IDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 1295
+ E++P L L+ D+ A +++IL++R + P + + ++
Sbjct: 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKN 552
Query: 1296 ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 1355
+A + G + L+ ++ V ++++ + + + + + +
Sbjct: 553 LIALILKHGSSPEKLAENEFLMRSI----FRVLQTSEDSIQPLFPQL----LAQFIEIVT 604
Query: 1356 KGVGDNQASIRRSSAY-----LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410
+ + ++ Y + + LVD T+ V
Sbjct: 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664
Query: 1411 WEALSRVVASVPKEVQPSYIKVIRDAISTSRDK-------ERRKKKGGPILIPGFCLPKA 1463
+ A++P+ ++P ++ + + + K + P
Sbjct: 665 IAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------ 718
Query: 1464 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI-RIIGDRFP 1522
L P+L IF Q LI+ A L L ++ + L+ ++ I L+ R+ +
Sbjct: 719 LVPVLGIF-QRLIASKAYEVHGFDL-LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776
Query: 1523 WQVKSAILSTLSIIIRKGGIALKPFLPQLQ---------TTFIKCLQDSTRTV-RSSAAL 1572
VK + I + G L F+ ++Q I L + R A +
Sbjct: 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALI 836
Query: 1573 ALGKL----SALSTRVDPLVGDLLSSL 1595
+ + ++ L+ ++S+
Sbjct: 837 GVLNMVINGQFFQSKYPTLISSTMNSI 863
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.5 bits (148), Expect = 8e-10
Identities = 86/839 (10%), Positives = 228/839 (27%), Gaps = 92/839 (10%)
Query: 973 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032
+ + I+ + +++ A + + P LL + + ND+ +
Sbjct: 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGV 143
Query: 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092
+ + +FK + SD+ + + +
Sbjct: 144 LTVAHS-IFKRWRPLFR------SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK 196
Query: 1093 VSLSVRQAALHVWKTIV-----ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1147
SL++ L V + + P+ ++ + V M L+ S+
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA 256
Query: 1148 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------SQLLSFM 1200
++ K+ + + +R + + I + + + + + S+ LSF+
Sbjct: 257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316
Query: 1201 DELIPTIRT-------ALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253
+ + + ++I E + E + L + D
Sbjct: 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDT 376
Query: 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 1313
D LK++ V L + + +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK--------------FK 422
Query: 1314 PALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLI 1373
+ ++ + T L+ + ++ L +R + I
Sbjct: 423 DLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482
Query: 1374 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI 1433
F + ++ L L + A + +++ ++ +
Sbjct: 483 YTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIRESNTSPAFIFH 538
Query: 1434 RDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 1493
++ IS L+ L+ + L+ S + +
Sbjct: 539 KEDISN-------------------STEILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579
Query: 1494 IEVTSEQSLKEFVIPITGPLIRIIG----DRFPWQVKSAILSTLSIIIRKGGIALKP-FL 1548
+ TSE S++ + I I+ + + ++ I+ P +
Sbjct: 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639
Query: 1549 PQLQTTFIKCLQDSTRTVRSSAALALGKL----SALSTRVDPLVGDLLSSLQVSDAGIRE 1604
+ TF+ + + + + + + + PL LL+ G
Sbjct: 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIP 699
Query: 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 1664
A+ LK +K V + + + L+ V +L + ++ +L
Sbjct: 700 AVTRLLKSFIKTDSSIFPDLVPV--LGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRL 755
Query: 1665 ADLLQELL-----NLASSPSWAARHGSVLVFATF-LRHNPSAISM------SPLFLSILD 1712
++++ L +S + + F + + LF I
Sbjct: 756 RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWG 815
Query: 1713 RLKSSLKDEKFP---LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 1768
+ R+ + + ++++ T++ + S++ S
Sbjct: 816 NFIIT-TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIA 873
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (147), Expect = 1e-09
Identities = 70/670 (10%), Positives = 174/670 (25%), Gaps = 81/670 (12%)
Query: 1091 SDVSLSVRQAALHVWKTIVAN-------TPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1143
+++ LS R A +K + + ++ ++ + S + + G
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIG 106
Query: 1144 RALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1203
A+ + P+++ L+ L + +GV + +
Sbjct: 107 EAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166
Query: 1204 IPTIRTALCDSILEVRESA-GLAFSTLFKSAGMQAIDEIVPT---LLHALEDDQTSDTAL 1259
I + L + ++ + A + + +++ L + +
Sbjct: 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226
Query: 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA 1319
D ++ + + L L L +V + ++ +
Sbjct: 227 DNIQVGMGI-----FHKYLSYSNPLLEDPDETEHASVLIKVKS-----SIQELVQLYTTR 276
Query: 1320 MGDDDMD-VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 1378
D + + +T + ++ + LVS+ L + +
Sbjct: 277 YEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL-----------TAVTRIPKY 325
Query: 1379 NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 1438
N+ +I+ V +E + ++++ S R A +
Sbjct: 326 FEIFNNESAMNNITEQIILPNVTLREEDVEL-FEDDPIEY--IRRDLEGSDTDTRRRACT 382
Query: 1439 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE--LREQAALGLGELIEV 1496
+ + K + L + Q + S ++ L
Sbjct: 383 DFLKELKEKNEV-------LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435
Query: 1497 TSEQS-----------LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 1545
+ + + +F P + AI I K
Sbjct: 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK----YIYTFRNQLTK 491
Query: 1546 PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 1605
L +L LQ V + AA+ + K+ + + E
Sbjct: 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST---EI 548
Query: 1606 ILTALKGVLKHAGKSVSSA-VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQL 1664
+L L ++ G S + + ++ +D ++ +L Q
Sbjct: 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL---------AQF 599
Query: 1665 ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMS------PLFLSILDRLKSSL 1718
+++ + S+P H + L + P FL++
Sbjct: 600 IEIVTIMAKNPSNPR--FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657
Query: 1719 KDEKFPLREA 1728
F +
Sbjct: 658 IPYVFQIIAF 667
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (110), Expect = 2e-05
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 469 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 528
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 529 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 575
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 619
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 670
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 671 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 788
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 789 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 848
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 849 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 896
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 897 SWLLDALKSDNSNVERSGAAQGLSEV 922
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (99), Expect = 5e-04
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 9/164 (5%)
Query: 1554 TFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 1612
T K L +S + ++ L +L L+ +++S + R A K
Sbjct: 6 TVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLL-HVIASTNL-PLSTRLAGALFFKN 63
Query: 1613 VLKH------AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 1666
+K + + + + L+ ++++V + ++ +
Sbjct: 64 FIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPT 123
Query: 1667 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 1710
LL +L + S+ G + V + + LFL I
Sbjct: 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 2e-08
Identities = 69/540 (12%), Positives = 145/540 (26%), Gaps = 75/540 (13%)
Query: 1313 LPALLSAMGDDDMDVQ--------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS 1364
+P L + D+D V L+K+ A ++ + V ++V + N
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVE 75
Query: 1365 IRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 1424
R +A + + + L I L+ +L + + A L +
Sbjct: 76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL------- 128
Query: 1425 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELRE 1484
+ G + L L + L + +
Sbjct: 129 ---------------------------LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 1485 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544
L L E L L+ I+ ++ L ++
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 1545 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 1604
L D ++ + + L LS +T+ + + G L + +Q+ +
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV------------YHDDDHVRVSAASIL 1652
+ A + + + + + ++ LV S
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 1653 GIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR---HNPSAISMSPLFLS 1709
+L L ++ L PS + + L N + +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401
Query: 1710 ILDRLKSSLKDEKF-------------PLREASTKALGRLLLHQIQSGPANTTVVV--DI 1754
++ L + +D + +R LH + N V+ +
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 461
Query: 1755 LASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAA 1814
+ V L+ ++R A L +A+ +A + L E L + V A
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 521
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (98), Expect = 5e-04
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 1714 LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL-HDDSSEVRRR 1772
L L DE + + + +L + + +++++V + + + E R
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 1773 ALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 1823
L +++ + + + PAL + L V A +
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 721
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 722 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 781
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 782 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 829 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 919
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 787
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 788 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 847 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 906
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 907 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1026
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1027 RIRQSSVELLG 1037
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.002
Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 29/270 (10%)
Query: 1353 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412
EL + + D+ + R SSA ++ + + I SD +
Sbjct: 23 ELFRLLDDHNSLKRISSARVLQLR----------GGQDAVRLAIEFCSDKNYIRRDIGAF 72
Query: 1413 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK---------KKGGPILIPG--FCLP 1461
L ++ + K+ + + ++ + + R K PI P
Sbjct: 73 ILGQIK--ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQ 130
Query: 1462 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 1521
+ + + ++A + L + ++ + D
Sbjct: 131 ITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR 190
Query: 1522 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS 1581
V+ + I ++ + L+ + TV A G+L
Sbjct: 191 DCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELG--D 246
Query: 1582 TRVDPLVGDLLSSLQVSDAGIREAILTALK 1611
+ P++ +L D I + + LK
Sbjct: 247 KTLLPVLDTMLYKFD--DNEIITSAIDKLK 274
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (89), Expect = 0.004
Identities = 25/268 (9%), Positives = 63/268 (23%), Gaps = 32/268 (11%)
Query: 1556 IKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615
+ L D R S+A L V + + R+ L
Sbjct: 25 FRLLDDHNSLKRISSARVLQLRGG-----QDAVRLAIEFCSDKNYIRRDIGAFIL----- 74
Query: 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 1675
+ + V+++L ++ +D + A ++++ A
Sbjct: 75 -GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA 133
Query: 1676 SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS--------ILDRLKSSLKDEKFPLRE 1727
S R + + + ++ L + +
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193
Query: 1728 ASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA 1787
+ + +L+ + L + V + A + + +
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGEL--GDKTL 249
Query: 1788 IMVHVALFGPALAECLKDGSTP-VRLAA 1814
+ P L L + +A
Sbjct: 250 L--------PVLDTMLYKFDDNEIITSA 269
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 56/421 (13%), Positives = 119/421 (28%), Gaps = 83/421 (19%)
Query: 1312 ILPALLSAMGDDDMDVQ---------SLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 1362
LP + + DDM Q L++E + +VI V LV + + +
Sbjct: 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE---NQP 133
Query: 1363 ASIRRSSAYLIGYFYKNS--KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 1420
++ +A+ + + + +V +A + + +L + S A W + S
Sbjct: 134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193
Query: 1421 VPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP-------LLPIFLQ 1473
+ + + + + C K QP LP +
Sbjct: 194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 253
Query: 1474 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTL 1533
+ S E A + L + E + I L+ ++ A+ +
Sbjct: 254 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313
Query: 1534 SIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRS------------------------- 1568
+I+ + L ++
Sbjct: 314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 373
Query: 1569 -----------------SAALALGKLSALSTRVDPLVGDLLSS---------LQVSDAGI 1602
A A+ S+ + ++ L+S L+++D I
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 433
Query: 1603 REAILTALKGVLKHAGKSVSS--------AVKIRVYSVLK---DLVYHDDDHVRVSAASI 1651
E L AL+ +LK + A I ++ + +++D + A I
Sbjct: 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 493
Query: 1652 L 1652
+
Sbjct: 494 I 494
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1866 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.67 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.66 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.47 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.32 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.31 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.27 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.12 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.09 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.94 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.93 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.79 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.69 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.2 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.08 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.05 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.64 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.58 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.04 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.68 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.83 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 80.5 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-43 Score=501.92 Aligned_cols=1064 Identities=16% Similarity=0.178 Sum_probs=749.2
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh-HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
.+..+++.+.+++++.|++|+..|........-. -......+++.++++|+|++++||..|++||+.++..++++.+..
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~ 83 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 83 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHH
Confidence 3556777889999999999887777655432111 112345789999999999999999999999999999998888899
Q ss_pred HHHHHHHhhCCCChhHHH----HHHHHHhccc----cccCCcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcC
Q 000201 775 LVPTLLMGLTDPNDHTKY----SLDILLQTTF----VNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVT 845 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr~----al~~L~~~~~----~~~~~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~ 845 (1866)
+++.|+..+.+++..+|. ++..++..-. ...........+++.+...+. ..++.+|..+.++++.+....+
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g 163 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999988888777763 4444433111 111222334455555555543 4578999999999999998765
Q ss_pred CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 846 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 846 ~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
. .+.++.+.+++.+...+.++.+.||..|+.+++.++..++++.+..+++.+++.+..+.+...|..++++++.+++.
T Consensus 164 ~--~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~ 241 (1207)
T d1u6gc_ 164 G--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 241 (1207)
T ss_dssp S--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred H--hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 4 67788999999999999999999999999999999999998888889999988887655555778889999999998
Q ss_pred hChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 000201 926 LGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 926 ~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~ 1002 (1866)
.|.. +++.++|.+.+.+.+.++.+|+.++.++..+...++..+.||+..+++.++..+.++................
T Consensus 242 ~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~ 321 (1207)
T d1u6gc_ 242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 321 (1207)
T ss_dssp SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred cchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhh
Confidence 8865 5678899999999999999999999999999999999999999999999999886432211111111111111
Q ss_pred HhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHH
Q 000201 1003 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1082 (1866)
Q Consensus 1003 ~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~v 1082 (1866)
.. .........+.......|.+|++|..++++++.++...+.. +. +....+
T Consensus 322 ~~-~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~-----------------------l~-----~~~~~~ 372 (1207)
T d1u6gc_ 322 AD-GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM-----------------------LP-----EFYKTV 372 (1207)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTT-----------------------HH-----HHHTTT
T ss_pred hh-ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH-----------------------HH-----HHHHHH
Confidence 11 11111223344445567889999999999999886332100 01 122345
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhcC------------------h-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHH
Q 000201 1083 LAALYMVRSDVSLSVRQAALHVWKTIVANT------------------P-KTLKEIMPVLMNTLISSLASSSSERRQVAG 1143 (1866)
Q Consensus 1083 l~~L~~~~~D~~~~vR~~A~~~l~~l~~~~------------------p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~ 1143 (1866)
++.++....|.+..||..++.++..+.... + ..+..++|.+++.+.+.+.+.+..+|..+.
T Consensus 373 ~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~ 452 (1207)
T d1u6gc_ 373 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 452 (1207)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHH
Confidence 666666778889999999999988876421 1 235567788889999999999999999999
Q ss_pred HHHHHHHHHhccc---cccchHHHHhcccCCCC--ccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHH
Q 000201 1144 RALGELVRKLGER---VLPSIIPILSRGLKDPS--ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1218 (1866)
Q Consensus 1144 ~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~--~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~v 1218 (1866)
.++..++...+.. .++.+++.+...+.+.. ..+|..++..+..++..+.+..+.+++..+.+.+...+.+....+
T Consensus 453 ~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 532 (1207)
T d1u6gc_ 453 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532 (1207)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHH
Confidence 9999999887654 34566666766776654 346788999999998888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchh----------hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccc
Q 000201 1219 RESAGLAFSTLFKSAGMQ----------AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 1288 (1866)
Q Consensus 1219 r~~A~~al~~l~~~~g~~----------~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~ 1288 (1866)
+..|..+++.+...+++. .+..+++.++..+.+.+.+.. ...
T Consensus 533 ~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e----------------------------~~~ 584 (1207)
T d1u6gc_ 533 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQE----------------------------VKE 584 (1207)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHH----------------------------HHH
T ss_pred HHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchH----------------------------HHH
Confidence 999988888887765431 122333333333322211100 011
Q ss_pred hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc----hhcHHHHHHHHHhccCCCchh
Q 000201 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID----EEGVESLVSELLKGVGDNQAS 1364 (1866)
Q Consensus 1289 ~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~ll~~L~~~l~~~~~~ 1364 (1866)
....+++.+....|..+.++++.+++.+...+.++. .|..+..++..+..... .+.+..+++.+...+.+.++.
T Consensus 585 ~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 662 (1207)
T d1u6gc_ 585 RAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRA 662 (1207)
T ss_dssp HHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHH
Confidence 123455566666677788889999999988887654 56667777777665432 245777888888889999999
Q ss_pred HHHHHHHHHHHHHhhccchhh-hhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcc---hhhhhHHHHHHHHhhh
Q 000201 1365 IRRSSAYLIGYFYKNSKLYLV-DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTS 1440 (1866)
Q Consensus 1365 vR~~a~~~l~~l~~~~~~~~~-~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~---~l~~l~~~l~~~l~~~ 1440 (1866)
+|..++.++..++...+.... .....++..+..++.+.+..++..+..++..+.+..+.. ....+++.+...+.+.
T Consensus 663 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~ 742 (1207)
T d1u6gc_ 663 LKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP 742 (1207)
T ss_dssp HHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCc
Confidence 999999999999877654443 345667777777888999999999999999998876643 2334444444433221
Q ss_pred hhhhh-hhhcCCc-cccCCcCCC-CCccccHHHHHHhhccC-----CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHH
Q 000201 1441 RDKER-RKKKGGP-ILIPGFCLP-KALQPLLPIFLQGLISG-----SAELREQAALGLGELIEVTSEQSLKEFVIPITGP 1512 (1866)
Q Consensus 1441 ~~~~~-~~~~~~~-~~l~g~~~~-~~l~~ilp~l~~~L~~~-----~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~ 1512 (1866)
..... ....... ..+.....+ .....+++.+...+.+. ........+.+++.+....+ ....+.+..++
T Consensus 743 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~l~~~l-- 819 (1207)
T d1u6gc_ 743 LLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACP-KEGPAVVGQFI-- 819 (1207)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSC-CCSHHHHTTTT--
T ss_pred hhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHH--
Confidence 00000 0000000 000000000 11122233333222221 23334455667777766552 22323222221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHH
Q 000201 1513 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLL 1592 (1866)
Q Consensus 1513 Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~ 1592 (1866)
.........+.++..++.+++++....+.. +.+.+...+++.+++++++||..|+.+||.+.. .+.+.++|.++
T Consensus 820 -~~~~~~~~~~~~~~~al~~Lge~~~~~~~~---~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~--~~~~~~lp~il 893 (1207)
T d1u6gc_ 820 -QDVKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVL 893 (1207)
T ss_dssp -TTTTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHH
T ss_pred -HHHhcccchHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--hhHHHHhHHHH
Confidence 111223345788999999999999887753 456788899999999999999999999999965 45678899998
Q ss_pred HHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH---------
Q 000201 1593 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ--------- 1663 (1866)
Q Consensus 1593 ~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~--------- 1663 (1866)
..+.. ++..++..++++++++.+.+.....++.+.+|..+...+.+.++.+|..+++|+|.++...|...
T Consensus 894 ~~l~~-~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~L~~~l~ 972 (1207)
T d1u6gc_ 894 QEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLI 972 (1207)
T ss_dssp HHHHS-CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSS
T ss_pred HHHhc-CchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 88865 45678899999999999988877778999999999988888899999999999999976554321
Q ss_pred ------------------------HHHHHHH----HHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHH
Q 000201 1664 ------------------------LADLLQE----LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 1715 (1866)
Q Consensus 1664 ------------------------~~~~l~~----ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~ 1715 (1866)
+.++++. ++....+++...|..++.+|+++++..|.-+. ++.+.++|.+.
T Consensus 973 ~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~--~~l~~llp~l~ 1050 (1207)
T d1u6gc_ 973 SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIR--DLLDTVLPHLY 1050 (1207)
T ss_dssp SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTG--GGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHH
Confidence 1222332 33455677888899899999999998886543 56788888887
Q ss_pred hh------------------hcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000201 1716 SS------------------LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1716 ~~------------------~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l 1777 (1866)
.. ..|++.++|++|.+|++.++..+... ..+.+++..++.|+.| +.|+|.++..++
T Consensus 1051 ~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~-----~~~~~~~~~~~~gl~d-~~di~~~~~~~l 1124 (1207)
T d1u6gc_ 1051 NETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIFEFLNHVEDGLKD-HYDIKMLTFLML 1124 (1207)
T ss_dssp HTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhh-----cCHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence 53 33467789999999999999877543 2467899999999998 579999999999
Q ss_pred HHHHhhCcchhhhhHhhHHHHHHhhhccC--c----------chhhhhHHHHHHHhhcccccchhHHHHHHHhh
Q 000201 1778 KSVAKANPSAIMVHVALFGPALAECLKDG--S----------TPVRLAAERCAVHAFQLTRGSEYIQGAQKFIT 1839 (1866)
Q Consensus 1778 ~~~a~~~~~~~~~~l~~l~p~l~~~~~~~--~----------~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~ 1839 (1866)
.+++..+|..+.++++.++|++.+.+..+ . ...++++.||+.++.+++..+ ..+.|.+|+.
T Consensus 1125 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 1197 (1207)
T d1u6gc_ 1125 VRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAE-KSPLMSEFQS 1197 (1207)
T ss_dssp HHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCS-SSSSCCCCCH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcCCCcc-cChHHHHHHH
Confidence 99999999999999999999999986542 2 234667779999998886554 4456666654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=437.54 Aligned_cols=1115 Identities=16% Similarity=0.167 Sum_probs=748.4
Q ss_pred hhHHHHHHHHHHHHhh--hhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh-hhHHHHHHHHHHHHcCC
Q 000201 511 DLVREGVVIFTGALAK--HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSD 587 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~--~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~-~~~~~l~~ll~~L~~~~ 587 (1866)
..+|..|..-|..... .+..++...+.+++.+++.|.+++++||..+..|+.+++....+ ....+++.++..+. ++
T Consensus 17 ~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~-~~ 95 (1207)
T d1u6gc_ 17 KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-SD 95 (1207)
T ss_dssp HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-CS
T ss_pred HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhc-CC
Confidence 5689888876655542 12122334668999999999999999999999999999877653 34566666666665 44
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchh-------hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHH
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSL-------KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l-------~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp 660 (1866)
+...|..++.+|..++..++.... ....+++.+...+.+..++..+..++.+++.+...+|..+.++...+++
T Consensus 96 ~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~ 175 (1207)
T d1u6gc_ 96 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILT 175 (1207)
T ss_dssp SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Confidence 567899999999999886643211 1124666777777777888899999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhH
Q 000201 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 739 (1866)
Q Consensus 661 ~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~ 739 (1866)
.++..+.+++..||+.|..++..++..++...+..+++.+++.+. +.+|.+|..++.+++.++...|..+..+++.++|
T Consensus 176 ~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~ 255 (1207)
T d1u6gc_ 176 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255 (1207)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 999999999999999999999999998888777788888888774 5678889999999999999999999999999999
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhhccc---hhHHhHHHHHHHhhC-CCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i~~lv~~L~~~l~-d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+...+++.++++|..+..++..+.....+ +++..+++.+.+.+. ||+............... ..........
T Consensus 256 ~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~---~~~~~~~~~~ 332 (1207)
T d1u6gc_ 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGS 332 (1207)
T ss_dssp HHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhh---hccchhhhhH
Confidence 999999999999999999999999987764 355667777666654 443222211111111000 0011112233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhH
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l 895 (1866)
+.......+.+|.+|..++++++.++.. .++.+.++++.+++.+...+.|.++.||..+..+++.+....+.......
T Consensus 333 ~~~~~~~~d~s~~vR~~a~~~L~~l~~~--~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 410 (1207)
T d1u6gc_ 333 DDEYSDDDDMSWKVRRAAAKCLDAVVST--RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLC 410 (1207)
T ss_dssp ---------CTTHHHHHHHHHHHHHHTT--CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhh
Confidence 3334445678999999999999999873 45577788999999999999999999999999999999887654422111
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHH
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 975 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~i 975 (1866)
.+..... .... +.. ..+....+++.+...+.+.++.+|..++.++..+....+..+.+|+..+
T Consensus 411 ~~~~~~~---~~~~--~~~------------l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~ 473 (1207)
T d1u6gc_ 411 DPDAMEQ---GETP--LTM------------LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVL 473 (1207)
T ss_dssp ----------CCCH--HHH------------HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHH
T ss_pred chHHHHh---hcch--HHH------------HHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhh
Confidence 1111110 1111 000 0112345566677778888999999999999999999999999999999
Q ss_pred HHHHHhhccCCC--hHHHHHHHHHHHHHHHhhcccc----hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000201 976 LPAILDGLADEN--ESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1049 (1866)
Q Consensus 976 l~~ll~~l~d~~--~~VR~~a~~al~~i~~~~~~~~----i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~ 1049 (1866)
++.+...+.+.. ..+|..++..+..+........ +..+.|.+...+.+.+++++..++..++.+...+......
T Consensus 474 ~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~ 553 (1207)
T d1u6gc_ 474 VPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP 553 (1207)
T ss_dssp HHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999999988654 4678888888888877665443 3457777788889999999999999999888765432110
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHH
Q 000201 1050 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTL 1127 (1866)
Q Consensus 1050 ~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~--~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L 1127 (1866)
. ..... .....++..+... ..+.+..+|..|+.+++.+..+.+..+...++.+++.+
T Consensus 554 ~---------~~~~~------------~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l 612 (1207)
T d1u6gc_ 554 S---------SFDAT------------PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 612 (1207)
T ss_dssp C---------CCCCH------------HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred h---------hhhhH------------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 0 00000 0111223333222 35778899999999999999888877777888888888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhcc----ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhH
Q 000201 1128 ISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1203 (1866)
Q Consensus 1128 ~~~l~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~l 1203 (1866)
...+.+. ..|..+..+++.+...... +.++.+++.+...+.+.++.+|..++.++..++...++.......+.+
T Consensus 613 ~~~l~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 690 (1207)
T d1u6gc_ 613 LERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAV 690 (1207)
T ss_dssp HHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHhcch--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhH
Confidence 8887654 4678888888877654332 245677788888888889999999999999988877654444556677
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhh
Q 000201 1204 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 1280 (1866)
Q Consensus 1204 l~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~ 1280 (1866)
++.+...+.+.+..++..+...+..+....+.. ....+++.++..
T Consensus 691 l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~-------------------------------- 738 (1207)
T d1u6gc_ 691 LDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL-------------------------------- 738 (1207)
T ss_dssp HTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHH--------------------------------
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHH--------------------------------
Confidence 777778888999999988877776664432211 111122222211
Q ss_pred hhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhc-cchhcHHHHHHHHHhccC
Q 000201 1281 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV-IDEEGVESLVSELLKGVG 1359 (1866)
Q Consensus 1281 L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~ll~~L~~~l~ 1359 (1866)
+.++........++.. .+..+... ........++..+.....
T Consensus 739 ~~s~l~~~~~~~~~~~-------------------------------------~~~~l~~~~~~~~~~~~l~~~l~~~~~ 781 (1207)
T d1u6gc_ 739 VRSPLLQGGALSAMLD-------------------------------------FFQALVVTGTNNLGYMDLLRMLTGPVY 781 (1207)
T ss_dssp HTCTTCCHHHHHHHHH-------------------------------------HHHHHHTTCCTTCSHHHHHHHHSTTTT
T ss_pred hcCchhhhhhHHHHHH-------------------------------------HHHHHHhccccccchHHHHHHHHHhhc
Confidence 1111110000011111 11111110 111223344444444332
Q ss_pred CC-c----hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcCCcchhhhhHHH
Q 000201 1360 DN-Q----ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS--DSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 1432 (1866)
Q Consensus 1360 ~~-~----~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~--d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~ 1432 (1866)
+. . .........+++.+....+... ...+..++.... +....++..+..+++.+....+..
T Consensus 782 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~-------- 849 (1207)
T d1u6gc_ 782 SQSTALTHKQSYYSIAKCVAALTRACPKEG----PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS-------- 849 (1207)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHSCCCS----HHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC--------
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccc--------
Confidence 21 1 1223334455555544333222 222222222222 233456666666666654433211
Q ss_pred HHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHH
Q 000201 1433 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGP 1512 (1866)
Q Consensus 1433 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~ 1512 (1866)
....+.+.+.+.+.+.++++|..|+.++|.++... . ..| .+.
T Consensus 850 ------------------------------~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~-~---~~~----lp~ 891 (1207)
T d1u6gc_ 850 ------------------------------GQLELKSVILEAFSSPSEEVKSAASYALGSISVGN-L---PEY----LPF 891 (1207)
T ss_dssp ------------------------------SCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT-H---HHH----HHH
T ss_pred ------------------------------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh-H---HHH----hHH
Confidence 12234566677778889999999999999988654 2 222 333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHH
Q 000201 1513 LIRIIGDRFPWQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 1591 (1866)
Q Consensus 1513 Li~~l~~~~~~~vr~~al~~L~~L~~~~~~-~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L 1591 (1866)
+.+.+.. ....+...+..+..++...+. .+.++.+.+++.+...+.++++.+|..++.|+|.|.... ...+++.|
T Consensus 892 il~~l~~--~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~--~~~~lp~L 967 (1207)
T d1u6gc_ 892 VLQEITS--QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--PETLLPRL 967 (1207)
T ss_dssp HHHHHHS--CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--GGGTHHHH
T ss_pred HHHHHhc--CchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 4555554 356777888899988877654 366788999999998899999999999999999997643 35688999
Q ss_pred HHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh---hHHHHHH
Q 000201 1592 LSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED---GQLADLL 1668 (1866)
Q Consensus 1592 ~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~---~~~~~~l 1668 (1866)
...+.++++.+|..++.+++.++...+..+. ++...++..+...+.+++..+|..+..+++.+++..|. +.+..++
T Consensus 968 ~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~-~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~ll 1046 (1207)
T d1u6gc_ 968 KGYLISGSSYARSSVVTAVKFTISDHPQPID-PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVL 1046 (1207)
T ss_dssp TTTSSSSCHHHHHHHHHHTGGGCCSSCCTHH-HHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999999999999999999999988777665 78888888778889999999999999999999988774 1244555
Q ss_pred HHHHhccCC------------------CCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHH
Q 000201 1669 QELLNLASS------------------PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAST 1730 (1866)
Q Consensus 1669 ~~ll~~~~~------------------~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~ 1730 (1866)
+.+.+...- .....|..+..++..++..+.+.+ ...+++..+...+.|+ ..||.-+.
T Consensus 1047 p~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~----~~~~~~~~~~~gl~d~-~di~~~~~ 1121 (1207)
T d1u6gc_ 1047 PHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL----DIFEFLNHVEDGLKDH-YDIKMLTF 1121 (1207)
T ss_dssp HHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS----CHHHHHHHHHHTTSSC-HHHHHHHH
T ss_pred HHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhc----CHHHHHHHHHhcccch-HHHHHHHH
Confidence 555442211 223367777778999998887664 2456778888888775 58999999
Q ss_pred HHhHHHHhhhhhc-CCCChhhHHHHHHHHHhhcCCCC--------HHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHH
Q 000201 1731 KALGRLLLHQIQS-GPANTTVVVDILASVVSALHDDS--------SEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800 (1866)
Q Consensus 1731 ~alg~ll~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~--------~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~ 1800 (1866)
..+.+++..+... .+--+....++-..+...++++. .|.+|.++.++..+...-.....|++..++..+.
T Consensus 1122 ~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1200 (1207)
T d1u6gc_ 1122 LMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQIS 1200 (1207)
T ss_dssp HHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcCCCcccChHHHHHHHHHH
Confidence 9999888765421 11011122222223333345443 6788888888888865433345566665554443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-31 Score=346.45 Aligned_cols=564 Identities=19% Similarity=0.239 Sum_probs=423.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 655 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v 655 (1866)
+..+.+.| +++++.+|..|+..|+.++..+|++... ..++|+|.+.+++++ ..+..+...++.+....|. ..++
T Consensus 12 i~~l~~~l-~~~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~~--ev~~~~~~~l~~~~~~~~~--~~~~ 85 (588)
T d1b3ua_ 12 IAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDED--EVLLALAEQLGTFTTLVGG--PEYV 85 (588)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCCH--HHHHHHHHHHTTCSGGGTS--GGGG
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcCC--hhHH
Confidence 33455555 5678899999999999999999987763 579999999886642 3443333333333322221 3367
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc-CCCChhhHHHHHHHHHHHHhhChhhHHhhh
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 734 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L-~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l 734 (1866)
..++|.+...+.+++..||++|.+++..+...++++.+...+.+++..| +++.+..|..|+.+++.++...+....
T Consensus 86 ~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~--- 162 (588)
T d1b3ua_ 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--- 162 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH---
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH---
Confidence 7889999999999999999999999999999999888855444455555 454456788888888888776655433
Q ss_pred cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhH
Q 000201 735 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 735 ~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
..+++.+.++++|.++.||.+++.+++.+++.+..+... ..+
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~--------------------------------------~~l 204 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--------------------------------------SEI 204 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------------HTH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHH--------------------------------------HHH
Confidence 357788888999999999999999999999877644331 123
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hh
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FP 893 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~ 893 (1866)
+|.+...++|.++.+|..+..+++.++..++. ..+...++|.+...+.|++|.||..++.+++.++...+.+. ..
T Consensus 205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~ 280 (588)
T d1b3ua_ 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT 280 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 44444555555666666677777766654422 22344567777777778888888888888888877776552 23
Q ss_pred hHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 894 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 894 ~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
.++|.+...+.+ .+..+|..++..++.++..++.. .++.++|.+.....+.++.+|..+..++..++..+|..
T Consensus 281 ~l~~~l~~ll~d-~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~- 358 (588)
T d1b3ua_ 281 DLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD- 358 (588)
T ss_dssp THHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH-
T ss_pred hhhHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh-
Confidence 466666655554 34557777778887777766644 34677888888888899999999888888888888764
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc-hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCc
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1047 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~-i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~ 1047 (1866)
.+.+.++|.+...+.|+++++|..+..++..+...++... .+.++|.+...+.|.+|++|.++++.++.+...+
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---- 433 (588)
T d1b3ua_ 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL---- 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH----
T ss_pred -HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc----
Confidence 4677889999999999999999999998888877665443 4558899999999999999999999998875443
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhchhhh-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q 000201 1048 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1126 (1866)
Q Consensus 1048 ~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~-~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~ 1126 (1866)
|.+.+ +.+.+.+...+.|..+.||.+|+.+++.++...+.. ...+.+++.
T Consensus 434 ---------------------------~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~~~ 484 (588)
T d1b3ua_ 434 ---------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPK 484 (588)
T ss_dssp ---------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHH
T ss_pred ---------------------------ChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHHHH
Confidence 22222 234444555678999999999999999998765542 234566777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHH
Q 000201 1127 LISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205 (1866)
Q Consensus 1127 L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1205 (1866)
+...+.++++..|..++.+++.+...++.. ..+.++|.+.+.+.|+.+++|.+++.+++.+....++.. +...+.|
T Consensus 485 l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i~~ 561 (588)
T d1b3ua_ 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKP 561 (588)
T ss_dssp HHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHHHH
Confidence 778889999999999999999999877755 457899999999999999999999999998866655432 3466778
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1206 TIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1206 ~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
.+.+.+.|+|.+||..|..|++.+
T Consensus 562 ~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 562 ILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 888888999999999999998765
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.5e-31 Score=367.25 Aligned_cols=774 Identities=13% Similarity=0.150 Sum_probs=518.9
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHHH--------HHhhhcCCcc
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 365 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~w~~~~~~~ 365 (1866)
+++.++|++++|||..+|++|+++|+++. . .|.+..++..+..+..+.+..+|.+|. ..|...+.+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~---~--~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLN---Q--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTST---T--STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH---h--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 46788999999999999999999999874 1 122344555555554555666777653 6798776666
Q ss_pred CCCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000201 366 GTDY-SGLFKALSHSNYNVRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439 (1866)
Q Consensus 366 ~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 439 (1866)
.+.+ ..++..|.+++..+|..++.+++.+.. .||+.++.++..+- +.++.+|.++..+|+
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~--------------s~~~~~~~~al~~L~ 151 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD--------------SEDYNTCEGAFGALQ 151 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSST--------------GGGSSCSSSSSTTTH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhC--------------CCCHHHHHHHHHHHH
Confidence 6666 778899999999999999999999874 35655443332221 013456777777777
Q ss_pred HhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHH
Q 000201 440 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 519 (1866)
Q Consensus 440 ~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~ 519 (1866)
++++... .++ . ........+.+++.+-..+.++. ..+|..++.
T Consensus 152 ~i~e~~~--------~~~-~----------------------~~~~~~~~~~ll~~ll~~~~~~~------~~vr~~al~ 194 (888)
T d1qbkb_ 152 KICEDSA--------EIL-D----------------------SDVLDRPLNIMIPKFLQFFKHSS------PKIRSHAVA 194 (888)
T ss_dssp HHHGGGH--------HHH-H----------------------TC---CCSTTTTHHHHTGGGSSS------SCSSSTTTH
T ss_pred HHHHHhH--------HHh-h----------------------HHHHHHHHHHHHHHHHHHhhCCC------HHHHHHHHH
Confidence 7754211 111 0 00112334556665555655432 357888888
Q ss_pred HHHHHhhhhcc-CCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHH---HHcCCChhHHHHH
Q 000201 520 FTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ---LMKSDKYGERRGA 595 (1866)
Q Consensus 520 ~l~~i~~~l~~-~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~---L~~~~~~~~R~~A 595 (1866)
++..+...... ....+..+++.+.....+++++++..++.|+..++....+.+..++..++.. ...+++..+|..|
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a 274 (888)
T d1qbkb_ 195 CVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274 (888)
T ss_dssp HHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 87766543322 1234677888888888888889999999998777654444333333332222 2345667888888
Q ss_pred HHHHHHHHhhhC-cchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HhC---cCchhcH-----------H
Q 000201 596 AFGLAGVVKGFG-ISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCE--KLG---RLFEPYV-----------I 656 (1866)
Q Consensus 596 ~~~L~~l~~~~g-~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~--~l~---~~~~p~v-----------~ 656 (1866)
...+..++.... ...+. ...+++.+...+..... ...... ..+.. ... ..+.|.+ .
T Consensus 275 ~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 349 (888)
T d1qbkb_ 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI-DIILLK----GDVEEDETIPDSEQDIRPRFHRSRTVAQQHDE 349 (888)
T ss_dssp HHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSST-THHHHT----TTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchH-HHHHHh----hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 877665553211 11110 01233333322221111 100000 00000 000 0000100 0
Q ss_pred hHHHH---HHHHcC----CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh
Q 000201 657 QMLPL---LLVAFS----DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 657 ~llp~---ll~~~~----D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
..+.. -..... +....+|+++..+++.++...+...++.++|.+.+.+.+++|+.|.+|+.+||.+++++.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~ 429 (888)
T d1qbkb_ 350 DGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG 429 (888)
T ss_dssp C-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHH
T ss_pred hhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHH
Confidence 00000 000111 12346899999999999887777777899999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcc
Q 000201 730 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 809 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 809 (1866)
+..+++.++|.++..++|+++.||..++++|++++.++..... .+
T Consensus 430 ~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~-----------------------------------~~ 474 (888)
T d1qbkb_ 430 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-----------------------------------DT 474 (888)
T ss_dssp HTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH-----------------------------------HH
T ss_pred hcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh-----------------------------------hh
Confidence 9999999999999999999999999999999999875532110 01
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
.+..+++.+...+.|.++.++..|+.++.++++..+ ..+.||++.+++.+...+.+.....+..+..+++.++...|+
T Consensus 475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 552 (888)
T d1qbkb_ 475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 552 (888)
T ss_dssp HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT--TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence 233456666777777888999999999999998654 368899999999999999999999999999999999988775
Q ss_pred C-----ChhhHHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHh-----------------c
Q 000201 890 E-----NFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC-----------------S 943 (1866)
Q Consensus 890 ~-----~~~~l~~~L~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l-----------------~ 943 (1866)
. +.+.+++.+.+....- .+...+....++++.++..+|.. +..++++.++..+ .
T Consensus 553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 632 (888)
T d1qbkb_ 553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 632 (888)
T ss_dssp GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4 3455666666544321 11124556778888888888765 2223332222211 1
Q ss_pred cCChhHHhHHHHHHHHhhhhhchhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---chhchHHhHh
Q 000201 944 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAVE 1018 (1866)
Q Consensus 944 ~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i~~llp~l~ 1018 (1866)
.++..+...++.+++.+...+|..|.+++.. +++.++.++.|.+++||..+...++.+...+... .++.++|.+.
T Consensus 633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~ 712 (888)
T d1qbkb_ 633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 712 (888)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1245666778889999999999999998864 7899999999999999999999998888766544 3456888888
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcC--CCcHH
Q 000201 1019 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1096 (1866)
Q Consensus 1019 ~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~--D~~~~ 1096 (1866)
..+.+..+.++..++..+|++....+.. + ..+.+.+++.|...++ +....
T Consensus 713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~---------------------------~-~py~~~il~~L~~il~~~~~~~~ 764 (888)
T d1qbkb_ 713 TNLNPEFISVCNNATWAIGEISIQMGIE---------------------------M-QPYIPMVLHQLVEIINRPNTPKT 764 (888)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHTGGG---------------------------G-GGGSHHHHHHHHHHHTCTTCCHH
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHH---------------------------h-hhhHHHHHHHHHHHHcCCCccHH
Confidence 8898999999999999999987553210 0 0233456666655443 45567
Q ss_pred HHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccC--CCC
Q 000201 1097 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPS 1173 (1866)
Q Consensus 1097 vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d~~ 1173 (1866)
+++.++.+++.++...|..+.++++.+++.++..+.. .+.+.+..|..++..+++.-++.+.+.+..++..... ++.
T Consensus 765 v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~ 844 (888)
T d1qbkb_ 765 LLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPK 844 (888)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999998888875 4566788999999999987766666655443332222 334
Q ss_pred ccchhhHHHHHHHHHHhhch
Q 000201 1174 ASRRQGVCIGLSEVMASAGK 1193 (1866)
Q Consensus 1174 ~~vr~~a~~~L~~li~~~~~ 1193 (1866)
++++...+..|..+....++
T Consensus 845 ~~~~~~~~~~l~~~~~~~~~ 864 (888)
T d1qbkb_ 845 DDLRDMFCKILHGFKNQVGD 864 (888)
T ss_dssp HHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 55666666666555444443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.4e-28 Score=323.25 Aligned_cols=563 Identities=17% Similarity=0.213 Sum_probs=443.0
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccc-hhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCC
Q 000201 454 MTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN-VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 532 (1866)
Q Consensus 454 ~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~-~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~ 532 (1866)
+..|+ ..+.+.++.+|..++.....+...-|.+. .+.++|.+...+++. +.++..+++.++.++..+...
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~-------~ev~~~~~~~l~~~~~~~~~~- 82 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-------DEVLLALAEQLGTFTTLVGGP- 82 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCC-------HHHHHHHHHHHTTCSGGGTSG-
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHcCCh-
Confidence 34444 46788999999888877666555556554 478999888886541 457777888887777655432
Q ss_pred cchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchh
Q 000201 533 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 611 (1866)
Q Consensus 533 ~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l 611 (1866)
.....+++.+...+.+++..||..++.++..+..... +...+.+..++..|.+++.+..|..|+..++.+....+....
T Consensus 83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~ 162 (588)
T d1b3ua_ 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 2467788888888888988999999999887765544 334555666788888777667788887777777765543322
Q ss_pred hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh
Q 000201 612 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 612 ~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
..+++.+.+..+++ ++.+|..+..+++.+++..+. +.....++|.+...+.|+++.||..+..++..++..++..
T Consensus 163 --~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~ 237 (588)
T d1b3ua_ 163 --AELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp --HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred --HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence 35777777777764 588999999999999987763 2234578899999999999999999999999999988876
Q ss_pred hH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-
Q 000201 692 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 769 (1866)
Q Consensus 692 ~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~- 769 (1866)
.. ..++|.+...+.|++|++|..++..|+.++...+..... ..++|.+..+++|++++||..|+.+++.++..+..
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 65 678899999999999999999999999999876555432 47889999999999999999999999999987653
Q ss_pred ----hhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000201 770 ----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 845 (1866)
Q Consensus 770 ----~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~ 845 (1866)
..+..++|.+...+.|++..+|..+...................++|.+...++|.++++|..+...++.+....+
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~ 395 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence 2457899999999999999998654332221000001123456789999999999999999999988888877543
Q ss_pred CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 846 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 846 ~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
.....+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.+.+.+...+. +....+|..++.+++.++.
T Consensus 396 ----~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-D~~~~VR~~A~~~L~~l~~ 470 (588)
T d1b3ua_ 396 ----IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVE 470 (588)
T ss_dssp ----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHH
Confidence 2345677899999999999999999999999999999987754 456676666665 4556799999999999999
Q ss_pred HhChh-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 925 ALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 925 ~~g~~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
.+|.+ ..+.++|.+.+...++++.+|..++.+++.+...++..+ +.+.++|.+++.+.|+.++||.++.+++..+..
T Consensus 471 ~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~ 548 (588)
T d1b3ua_ 471 KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99987 446788999999999999999999999999999888754 567899999999999999999999999999887
Q ss_pred hhcccch-hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1004 HYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1004 ~~~~~~i-~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.++.... ..+.|.+.....|++-.||..+.+.+..+
T Consensus 549 ~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 7665543 33677788878899999999888877654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-30 Score=360.75 Aligned_cols=792 Identities=16% Similarity=0.165 Sum_probs=546.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhc---cccccCCcchhhhHHHHHHHhhc
Q 000201 747 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRGLR 823 (1866)
Q Consensus 747 D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~---~~~~~~~~~~l~~l~p~L~~~l~ 823 (1866)
++++.+|+.|.+.|.++.. .|++..++..++....+++..+|.....+... ..-...+......+.+.+.+++.
T Consensus 22 s~d~~~r~~A~~~L~~~~~---~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~ 98 (888)
T d1qbkb_ 22 SPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIG 98 (888)
T ss_dssp HHHHHHHHHHTTSTTTSTT---STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHc
Confidence 3457899999988887643 35554444555555556666777533222221 11122445567788899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC--------CCChhhH
Q 000201 824 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--------EENFPDL 895 (1866)
Q Consensus 824 d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g--------~~~~~~l 895 (1866)
+.+..+|..++.+++.++... . ...++.++|.|.+.+.++++.+|..+..+|+.+++..+ ......+
T Consensus 99 ~~~~~vr~~~~~~i~~i~~~~-~----~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~l 173 (888)
T d1qbkb_ 99 DSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 173 (888)
T ss_dssp CCCSSTTTTTTTTTHHHHTTT-S----SCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C----ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Confidence 999999999999999998732 1 23467788888888888888888889999998886432 1245668
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 972 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l 972 (1866)
+|.+++.+.++.. .+|..++.++..+....+.. .++.+++.+.....++++.+|..++.+|..+....+..+.||+
T Consensus 174 l~~ll~~~~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l 252 (888)
T d1qbkb_ 174 IPKFLQFFKHSSP-KIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 252 (888)
T ss_dssp THHHHTGGGSSSS-CSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTT
T ss_pred HHHHHHHhhCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999888876543 47888888887766544432 5678888888888899999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh-----cccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCc
Q 000201 973 QQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1047 (1866)
Q Consensus 973 ~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~-----~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~ 1047 (1866)
..+++.++..+.|++++||..|++.+..+.+.. -...+..++|.+...+...++.+.........+ .......
T Consensus 253 ~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 330 (888)
T d1qbkb_ 253 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEED--ETIPDSE 330 (888)
T ss_dssp TTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCC--TTSCCCG
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhh--hhhhhhH
Confidence 999999999999999999988877665444321 112344566666666665555543211000000 0000000
Q ss_pred c--cccccC-CCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q 000201 1048 G--KALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1124 (1866)
Q Consensus 1048 ~--~~~~~~-~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~ 1124 (1866)
. +..+.. ...... .... .......+ .........+..+.+|..|..++..++...+. ++++.++
T Consensus 331 ~~i~~~~~~~~~~~~~-~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~---~il~~~l 397 (888)
T d1qbkb_ 331 QDIRPRFHRSRTVAQQ-HDED----GIEEEDDD-----DDEIDDDDTISDWNLRKCSAAALDVLANVYRD---ELLPHIL 397 (888)
T ss_dssp GGCCCCCCCCCCCCCC-CTTC---------CHH-----HHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS---SSHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hhhh----hhhhcccc-----hhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH---HHHHHHH
Confidence 0 000000 000000 0000 00000000 00000001234567899999999988877664 4678888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc---ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHh
Q 000201 1125 NTLISSLASSSSERRQVAGRALGELVRKLGE---RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1201 (1866)
Q Consensus 1125 ~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~---~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~ 1201 (1866)
+.+...+.++++..|.+|..++|.++....+ +.++.++|.+...+.|+++.+|..+|++++.+.....+....+|+.
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~ 477 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 477 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTT
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 9898999999999999999999998765443 3578899999999999999999999999998876655555567888
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhh
Q 000201 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 1281 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L 1281 (1866)
.+++.+...+.|.++.|+.+|+.++..+.+..
T Consensus 478 ~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~------------------------------------------------ 509 (888)
T d1qbkb_ 478 PLMTELLKRILDSNKRVQEAACSAFATLEEEA------------------------------------------------ 509 (888)
T ss_dssp THHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 99999999999999999999988887665432
Q ss_pred hcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch-----hcHHHHHHHHHh
Q 000201 1282 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-----EGVESLVSELLK 1356 (1866)
Q Consensus 1282 ~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~ll~~L~~ 1356 (1866)
+..+.+|++.+++.+...+...+...+..+..+++.++..++. ...+.+++.+..
T Consensus 510 --------------------~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~ 569 (888)
T d1qbkb_ 510 --------------------CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 569 (888)
T ss_dssp --------------------TTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHH
T ss_pred --------------------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 3344566777777777777766666666666677766654432 335566666554
Q ss_pred cc---CCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC-----------------CCChhHHHHHHHHHHH
Q 000201 1357 GV---GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----------------DSDSTTVAAAWEALSR 1416 (1866)
Q Consensus 1357 ~l---~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~-----------------d~~~~v~~~A~~aL~~ 1416 (1866)
.. .++ ...+.....+++.++...+..+.+|...+...++..+. .++..+...+..+++.
T Consensus 570 ~~~~~~~~-~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 648 (888)
T d1qbkb_ 570 KWNMLKDE-DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG 648 (888)
T ss_dssp HHTTSCTT-CTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH
T ss_pred HHHhcccc-hHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 33 333 33445667888888777777777777666655554431 1222333333333333
Q ss_pred HHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhh
Q 000201 1417 VVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV 1496 (1866)
Q Consensus 1417 l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~ 1496 (1866)
++...+....+ .+ ....+++.+...+.+.++++|+.+...+|+++..
T Consensus 649 l~~~l~~~~~~--------------------------~~-------~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~ 695 (888)
T d1qbkb_ 649 LAEGLGGNIEQ--------------------------LV-------ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 695 (888)
T ss_dssp HHHHHTTTTHH--------------------------HH-------HTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhh--------------------------hh-------hHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence 33222111000 00 0124678888889889999999999999999998
Q ss_pred cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 000201 1497 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALAL 1574 (1866)
Q Consensus 1497 ~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aL 1574 (1866)
+ +..+.||+..+++.++..+.+. ..+++..++.++|.++.+.|..+.||++.+++.+++.++++ ++.++..++.|+
T Consensus 696 ~-~~~~~~~l~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~l 773 (888)
T d1qbkb_ 696 C-FQHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 773 (888)
T ss_dssp C-GGGTGGGHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 8 7789999999999999998774 67899999999999999999999999999999999999886 678999999999
Q ss_pred HHHHh-----ccCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 000201 1575 GKLSA-----LSTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSA 1648 (1866)
Q Consensus 1575 g~L~~-----~~~~~~~~l~~L~~~l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~a 1648 (1866)
|+|.. +.|+++.+++.++..+.. .+.+-+..++.++..++...+..+. +....++..+.. ..+..++++...
T Consensus 774 grl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-~~l~~~~~~i~~-~~~~~~~~~~~~ 851 (888)
T d1qbkb_ 774 GRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-QDFIFFCDAVAS-WINPKDDLRDMF 851 (888)
T ss_dssp HHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHTT-CSSCCHHHHHHH
T ss_pred HHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-HHHHHHHHHHHh-cCCCCHHHHHHH
Confidence 99954 346777888888888865 4556688899999999987766655 455556555543 234568899999
Q ss_pred HHHHHHHHhhcChhHHHHHH
Q 000201 1649 ASILGIMSQCMEDGQLADLL 1668 (1866)
Q Consensus 1649 a~~l~~L~~~~~~~~~~~~l 1668 (1866)
.++|+.+....|++...+++
T Consensus 852 ~~~l~~~~~~~~~~~w~~~~ 871 (888)
T d1qbkb_ 852 CKILHGFKNQVGDENWRRFS 871 (888)
T ss_dssp HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHhHHHHH
Confidence 99999988777765444443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.1e-23 Score=283.94 Aligned_cols=716 Identities=13% Similarity=0.157 Sum_probs=486.3
Q ss_pred Chhhhh-hhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh--
Q 000201 368 DYSGLF-KALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-- 444 (1866)
Q Consensus 368 ~~~~ll-~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~-- 444 (1866)
++.++| .++.++|+.+|+.|.+.|..+.+..+.. .+..+..... +. ..+..+|+.++..|++....
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~---~~~~l~~il~----~~----~~~~~~r~~A~i~lkn~i~~~~ 73 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ---FAGLSSQVLI----DE----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchH---HHHHHHHHHH----cC----CCCHHHHHHHHHHHHHHhhccc
Confidence 344555 5688999999999999998887654322 2333333221 11 11457999999999876431
Q ss_pred --------------cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhh
Q 000201 445 --------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 509 (1866)
Q Consensus 445 --------------~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~ 509 (1866)
++++....+...++ .++.++++.||..+..+...+.....+ ..|+.+++.+-..+.+..+
T Consensus 74 ~~~~~~~~~~~~~~i~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~---- 148 (861)
T d2bpta1 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQP---- 148 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSC----
T ss_pred chhhhhHHhhhHhcCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCc----
Confidence 23333333444444 456789999999988887776654433 4799999976666554221
Q ss_pred hhhHHHHHHHHHHHHhhhhccCC----cchHHHHHHHHHhcC--CCcHHHHHHHHhhhhhhhHhhhhh-----hHHHHHH
Q 000201 510 YDLVREGVVIFTGALAKHLAKDD----PKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSR 578 (1866)
Q Consensus 510 ~~~vr~~av~~l~~i~~~l~~~~----~~~~~l~~~l~~~l~--~~~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ 578 (1866)
..+|..+..+++.++..++... +.+..++..++..+. +++..++..+..|+..++...... ....+..
T Consensus 149 -~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 227 (861)
T d2bpta1 149 -ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp -HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHH
Confidence 4688999999999997765432 234566666666664 456789999988887766554421 2233333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhh-cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC---------
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKLG--------- 648 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~-~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~--------- 648 (1866)
.+....+++++.+|..+..++..++...+...... ..++..+........++..|..++..+..+++...
T Consensus 228 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T d2bpta1 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455567788999999999999998664221110 12333333334445567888888888887765321
Q ss_pred --------cCchhcHHhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHH
Q 000201 649 --------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 713 (1866)
Q Consensus 649 --------~~~~p~v~~llp~ll~~~~D-------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~ 713 (1866)
....+++..++|.+...+.+ .+..+|..+..++..++...+...+..+++.+...+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (861)
T d2bpta1 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHH
Confidence 01233455677877777653 345799999999999999888877788888888899999999999
Q ss_pred HHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-----hhHHhHHHHHHHhhCCCC
Q 000201 714 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 714 ~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~L~~~l~d~~ 787 (1866)
+++..++.++.... ..+..+++.+++.+.+.+.|+++.||.+++++++.+++.+.. ..+..+++.+.....+..
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 467 (861)
T d2bpta1 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP 467 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccCh
Confidence 99999999998764 456778889999999999999999999999999999887653 234667777777666543
Q ss_pred hhHHHHHHHHHhc--ccccc---CCcchhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHH
Q 000201 788 DHTKYSLDILLQT--TFVNT---VDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 860 (1866)
Q Consensus 788 ~~vr~al~~L~~~--~~~~~---~~~~~l~~l~p~L~~~l~--d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~ 860 (1866)
...+.+...+... ..... ...+....++..+..... +....+|..+..+++.++...+ ..+.++...+.+.
T Consensus 468 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~--~~~~~~~~~l~~~ 545 (861)
T d2bpta1 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT--DTVAETSASISTF 545 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 3333333322220 11111 112233344444444432 3456788888999999887543 4677777777766
Q ss_pred HHHHhc----CC-----------CHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 861 VKKVLV----DP-----------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 861 L~~~l~----d~-----------~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
+...+. .. ...++..+..+++.+....+.. +.+.+++.++..+....+..+|..++.+++.+
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l 625 (861)
T d2bpta1 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHH
Confidence 665543 11 1234556666777777766654 45667777777777666556788889999999
Q ss_pred HHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC--ChHHHHHHHHH
Q 000201 923 LAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--NESVRDAALGA 997 (1866)
Q Consensus 923 ~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~--~~~VR~~a~~a 997 (1866)
+..+|.+ +++.++|.+...+++.++.+|..++.+++.++..++..+.||++.+++.++..+.++ +.++|..++.+
T Consensus 626 ~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~ 705 (861)
T d2bpta1 626 AASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSV 705 (861)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9998876 678899999999999999999999999999999999999999999999999998765 45789999999
Q ss_pred HHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 998 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 998 l~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
+..++..++... ...+|.+. ..+..... . ..++.. .+. .
T Consensus 706 l~~i~~~~~~~~-~~~l~~~~------------------~~l~~~~~-~--------~~~~~~--~~~-----~------ 744 (861)
T d2bpta1 706 FGDIASNIGADF-IPYLNDIM------------------ALCVAAQN-T--------KPENGT--LEA-----L------ 744 (861)
T ss_dssp HHHHHHHHGGGG-HHHHHHHH------------------HHHHHHHT-C--------CCSSSS--HHH-----H------
T ss_pred HHHHHHHHHHHH-HHHHHHHH------------------HHHHHHhC-c--------CCCccc--HHH-----H------
Confidence 999888776432 11122211 11111100 0 000000 000 0
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh---cChhhHHHhHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHH
Q 000201 1078 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~---~~p~~l~~~l~~l~~~L~~~l~~----~~~~~R~~A~~~L~~lv 1150 (1866)
|....+|+.++.++..++. ..+..+.++++.+++.+...+.+ .+...+..++.++|.++
T Consensus 745 --------------~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~ 810 (861)
T d2bpta1 745 --------------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHH
Confidence 0112467888888777764 34667888999888877766654 46678889999999999
Q ss_pred HHhcccc
Q 000201 1151 RKLGERV 1157 (1866)
Q Consensus 1151 ~~~~~~~ 1157 (1866)
..+|+..
T Consensus 811 ~~~~~~~ 817 (861)
T d2bpta1 811 AMFPDGS 817 (861)
T ss_dssp HHCTTST
T ss_pred HHCcchh
Confidence 9888643
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.9e-22 Score=275.38 Aligned_cols=765 Identities=14% Similarity=0.160 Sum_probs=504.8
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh--hHHHHHHHHHhccccccCCcchhhh
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLAL 813 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~ 813 (1866)
++...|...+.++++.+|+.|-+.|..+.+. ....+++.+.+.+.+.+. .+|.....+.
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~r~~A~i~l--------------- 65 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTL--------------- 65 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc----CchHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------
Confidence 4455566667788999999999999988642 223566677777766542 3442111111
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc-CCCCh
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF 892 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~-g~~~~ 892 (1866)
.+.+................ ..+. ......+...+.+.+.++++.+|..++.+++.++..- +...|
T Consensus 66 -----kn~i~~~~~~~~~~~~~~~~---~~i~-----~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w 132 (861)
T d2bpta1 66 -----KNELVSKDSVKTQQFAQRWI---TQVS-----PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW 132 (861)
T ss_dssp -----HTTTCCSSHHHHHHHHHHHH---HHSC-----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred -----HHHhhcccchhhhhHHhhhH---hcCC-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch
Confidence 11121111111111111110 1111 0122335566677788899999999999999999864 34478
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh------HHHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhh
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSL 964 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~------~l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~ 964 (1866)
+++++.|++.+.+..+...|.+++.+++.++...+.. .+..+++.+++.+.+ .+..+|..++.++..+...+
T Consensus 133 peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 212 (861)
T d2bpta1 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777778889999999999877653 345666677766543 46899999999999998888
Q ss_pred chhhH--hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchh---chHHh-HhcccCCCchHHHHHHHHHHHH
Q 000201 965 GVQFQ--NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---LLLPA-VEDGIFNDNWRIRQSSVELLGD 1038 (1866)
Q Consensus 965 g~~f~--~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~---~llp~-l~~~l~d~~w~vR~~s~~ll~~ 1038 (1866)
+..+. .....+++.+...+.++++++|..+.+++..++..++....+ .++.. +.....+.++.+|..+++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~ 292 (861)
T d2bpta1 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 76553 345667888888999999999999999999998877654322 12222 2234455666677666665554
Q ss_pred HHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHH
Q 000201 1039 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1118 (1866)
Q Consensus 1039 ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~ 1118 (1866)
+..... . ..... ..... ...........
T Consensus 293 l~~~~~---------------------------~---------~~~~~-~~~~~---------------~~~~~~~~~~~ 320 (861)
T d2bpta1 293 ICEEEI---------------------------D---------IAYEL-AQFPQ---------------SPLQSYNFALS 320 (861)
T ss_dssp HHHHHH---------------------------H---------HHHHH-HHCTT---------------CSCCCCCHHHH
T ss_pred HHHHHH---------------------------H---------HHHHH-Hhhhh---------------hHHHHHHHHHH
Confidence 421100 0 00000 00000 00001112233
Q ss_pred hHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh
Q 000201 1119 IMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1191 (1866)
Q Consensus 1119 ~l~~l~~~L~~~l~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~ 1191 (1866)
.++.+++.+...+. +.+...|..+..++..+....+..+++.+.+.+...+.+.++..|..++.+++.+....
T Consensus 321 ~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~ 400 (861)
T d2bpta1 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence 34444555544443 23457899999999999999999899999999888888999999999999999888777
Q ss_pred chhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh-----HhhHHHHHHHhccCCCchhHHHHHHHHHh
Q 000201 1192 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALEDDQTSDTALDGLKQIL 1266 (1866)
Q Consensus 1192 ~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L~~~~~~~~al~~l~~il 1266 (1866)
++....++++.+++.+...+.|+++.||+.+..+++.+...++... +..+++.+...+.+...
T Consensus 401 ~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------ 468 (861)
T d2bpta1 401 DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPK------------ 468 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHH------------
T ss_pred chhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChH------------
Confidence 7777788999999999999999999999999999999988776532 22233333332222110
Q ss_pred hccccccchhhhhhhhcCCccchhHHHHHHHHHHhC----CCchhhHhhHHHHHHHhcCC--CCHHHHHHHHHHHhHhhh
Q 000201 1267 SVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG----PGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTL 1340 (1866)
Q Consensus 1267 ~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g----~~l~~~l~~il~~L~~~l~~--~~~~vr~~a~~~l~~l~~ 1340 (1866)
.......++..+..... ..+.+++..++..++..... .+..++..+..++..++.
T Consensus 469 -------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~ 529 (861)
T d2bpta1 469 -------------------VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp -------------------HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 00011122333333222 23456666777777765543 346788888888888887
Q ss_pred ccchh---cHHHHHHH----HHhccCCCc-----------hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCC
Q 000201 1341 VIDEE---GVESLVSE----LLKGVGDNQ-----------ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 1402 (1866)
Q Consensus 1341 ~~~~~---~~~~ll~~----L~~~l~~~~-----------~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 1402 (1866)
..++. ....+++. +...+.... ...+..++.+++.++...+.++.++.+.++..++..+.+.
T Consensus 530 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 609 (861)
T d2bpta1 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccC
Confidence 66542 22233322 222222111 2245566677777777788889999999999999988654
Q ss_pred -ChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHH
Q 000201 1403 -DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 1481 (1866)
Q Consensus 1403 -~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~ 1481 (1866)
+..+++.++.+++.++...+.+. .+++..++|.+..++.+.+..
T Consensus 610 ~~~~v~~~~l~~l~~l~~~~~~~~-----------------------------------~~~l~~i~p~l~~~l~~~~~~ 654 (861)
T d2bpta1 610 DSAFIEDDVFYAISALAASLGKGF-----------------------------------EKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp TGGGTHHHHHHHHHHHHHHHGGGG-----------------------------------HHHHHHHHHHHHHHHHCTTSH
T ss_pred CchhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHhhHHHHHhCCCCHH
Confidence 45688889999888876544321 134556788888899888889
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 000201 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560 (1866)
Q Consensus 1482 ~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~-~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~ 1560 (1866)
++..++.+++.++... +..+.||++.+++.|++.+++. .+..+|..++.+++.++..+|..+.||++++++.+.+.++
T Consensus 655 v~~~a~~~l~~i~~~~-~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~ 733 (861)
T d2bpta1 655 VSITAVGFIADISNSL-EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh-HHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999887 7789999999999999999764 3568999999999999999999999999999999999886
Q ss_pred CCC-----------HHHHHHHHHHHHHHHh-c-------cCChhhHHHHHHHHhcc----CChhHHHHHHHHHHHHHHhc
Q 000201 1561 DST-----------RTVRSSAALALGKLSA-L-------STRVDPLVGDLLSSLQV----SDAGIREAILTALKGVLKHA 1617 (1866)
Q Consensus 1561 d~~-----------~~vR~~Aa~aLg~L~~-~-------~~~~~~~l~~L~~~l~~----~~~~vr~~~l~aL~~vi~~~ 1617 (1866)
... ..+|..+..++..++. + .|.++.+++.+...+.+ .+.+++.+++..++.+....
T Consensus 734 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 813 (861)
T d2bpta1 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHC
Confidence 541 2578888888877743 1 23333333333333333 35677888888898888887
Q ss_pred CccccHHHH--HHHHHHHHHhhcCC--CHHHHHHHHHH
Q 000201 1618 GKSVSSAVK--IRVYSVLKDLVYHD--DDHVRVSAASI 1651 (1866)
Q Consensus 1618 ~~~l~~~~~--~~i~~~L~~~l~~~--~~~vr~~aa~~ 1651 (1866)
|.....+.. +.+...+.....+. ++..|..|.-+
T Consensus 814 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 851 (861)
T d2bpta1 814 PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWA 851 (861)
T ss_dssp TTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred cchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHH
Confidence 764222221 22333343433333 45566554433
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.7e-23 Score=288.49 Aligned_cols=760 Identities=16% Similarity=0.181 Sum_probs=480.7
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH-------------------
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA------------------- 354 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 354 (1866)
||+.++|++++|||..+|++|+++|++.. .++.|.+...+..+- ...+.+..+|.+|
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~---~~~~~~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAA---VENLPTFLVELSRVL-ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHhCcCHHHHHHHHHHHHHHH---hcChhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 68999999999999999999999998754 122222333333332 1222334445443
Q ss_pred HHHhhhcCCccCCCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhhcCCCCCCCCCC
Q 000201 355 EDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD------EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 427 (1866)
Q Consensus 355 ~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 427 (1866)
.+.|...+.+.++.+ ..+++.+.+++. +|++++.+++.++. .||+.++.++..+.+ + +.+
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~--------~----~~~ 143 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN--------P----NST 143 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--------T----TCC
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC--------C----CCc
Confidence 245776665666566 777888888774 67778999988853 366666555444421 1 124
Q ss_pred cchhhHHHHHHHHhhhhcCCC----ChHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhcc-----cchhhhHHHHH
Q 000201 428 WLGRQGIALALHSAADVLRTK----DLPVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGR-----DNVSLLFPIFE 497 (1866)
Q Consensus 428 ~~~R~~~~~~l~~~~~~~~~~----~~~~~~~fli~~~l-~d~~~~vr~~~~~a~~~~i~~~g~-----~~~~~ll~~le 497 (1866)
...|.++..+|+++++.+.++ ....++..+++... .+++..+|..++.+....+..... .....+++.+.
T Consensus 144 ~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~ 223 (876)
T d1qgra_ 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 578999999999998765543 33456665554333 467789999888877665443221 11234666666
Q ss_pred HhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC-CcchH-HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh------
Q 000201 498 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ------ 569 (1866)
Q Consensus 498 ~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~-~~~~~-~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~------ 569 (1866)
..+.+++ ..+|..++.++..++..+... .+++. .++..+...+.+..+++...+...+..+.....
T Consensus 224 ~~~~~~~------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 297 (876)
T d1qgra_ 224 EATQCPD------TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHTTCSS------HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655422 568999999999998765432 23332 456667777888877776665554332221100
Q ss_pred -------------------hhhHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH
Q 000201 570 -------------------DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 624 (1866)
Q Consensus 570 -------------------~~~~~~l~~ll~~L~~------~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i 624 (1866)
......++.+...+.. ++++..|..|..++..+....+...+ ..+++++.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~i~~~l 375 (876)
T d1qgra_ 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV--PHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHT
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh--hhhHHHHHHhh
Confidence 0112222333333321 23467899999999999987765444 24677777777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHHhC-cCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-----hHHhHHH
Q 000201 625 ADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLP 698 (1866)
Q Consensus 625 ~~~~~~~~r~~al~al~~L~~~l~-~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-----~v~~llp 698 (1866)
.+ .+|..|+++..+++.++++.. ..+.+++.++++.+...+.|+++.||.++.++++.+++.++.. .+..+++
T Consensus 376 ~~-~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 454 (876)
T d1qgra_ 376 KN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp TC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred cc-chHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHH
Confidence 65 579999999999998887665 4567889999999999999999999999999999999876543 2467788
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChh--------------hHHhhhcchhHHHhhhccCC---ChHHHHHHHHHHH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ--------------QLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQ 761 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~--------------~~~~~l~~iv~~l~~~L~D~---~~~VR~aA~~aL~ 761 (1866)
.+...+++ +++++..++..+..+...... .+..+++.+++.+...+.+. +..++..+..++.
T Consensus 455 ~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ 533 (876)
T d1qgra_ 455 CLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLM 533 (876)
T ss_dssp HHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHH
Confidence 88877755 688888899888888764321 23455667777777777543 4668888888888
Q ss_pred HHHhhccc---hhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 762 QVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 838 (1866)
Q Consensus 762 ~l~~~i~~---~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~ 838 (1866)
.+.....+ +.+..+++.+...+. ..... ..+.... .. +. ...+.+...+..+.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~l~~-~~~~~~~-~~----~~-------~~~~~~~~l~~~l~ 589 (876)
T d1qgra_ 534 EIVKNSAKDCYPAVQKTTLVIMERLQ-----------QVLQM-ESHIQST-SD----RI-------QFNDLQSLLCATLQ 589 (876)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHH-----------HHHTT-TTSCCST-TH----HH-------HHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHH-hhhhcch-hh----hH-------HHHHHHHHHHHHHH
Confidence 77765543 222333333322211 00000 0000000 00 00 00122333444555
Q ss_pred HHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHH
Q 000201 839 NMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERS 913 (1866)
Q Consensus 839 ~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~ 913 (1866)
.+...++. ....++.+.+++.+...+.. ++..++..+..+++.++...|+. +++.++|.+...+.+..++.+|.
T Consensus 590 ~~~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~ 668 (876)
T d1qgra_ 590 NVLRKVQH-QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHTTSCH-HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHcch-hhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 55543322 34556778889998888763 46789999999999999988875 67889999999998877777899
Q ss_pred HHHHHHHHHHHHhChh---HHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCCh
Q 000201 914 GAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988 (1866)
Q Consensus 914 ~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~ 988 (1866)
.++..++.+....+.. +.+.+++.++..++++ ++.+|..++.+++.++..+|..|.+|++.++|.+.+.+....+
T Consensus 669 ~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~ 748 (876)
T d1qgra_ 669 AAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVD 748 (876)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccC
Confidence 9999999998887765 5678888888888765 5789999999999999999999999999999998887652211
Q ss_pred HHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHH
Q 000201 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1068 (1866)
Q Consensus 989 ~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~ 1068 (1866)
.......+.... +|.++++.+..++....+... ......
T Consensus 749 ~~~~~~~~~~~~---------------------------l~~~~~~~~~~i~~~~~~~~~---------~~~~~~----- 787 (876)
T d1qgra_ 749 KSDYDMVDYLNE---------------------------LRESCLEAYTGIVQGLKGDQE---------NVHPDV----- 787 (876)
T ss_dssp TTCHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHCSSS---------SCCGGG-----
T ss_pred ccchhHHHHHHH---------------------------HHHHHHHHHHHHHHHhccccc---------cchhhH-----
Confidence 100000000000 122222233333222211000 000000
Q ss_pred HHHHHhchhhhHHHHHHHH--HhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhH---HHHHHHHHHhhcCCCHHHHHHHH
Q 000201 1069 AIIEVLGRDKRNEVLAALY--MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLISSLASSSSERRQVAG 1143 (1866)
Q Consensus 1069 ~l~~~lg~~~~~~vl~~L~--~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l---~~l~~~L~~~l~~~~~~~R~~A~ 1143 (1866)
..+ .++...++..+. ....+.+..++..|+.+++.++...|....+.+ |.+.+.+.....++++..|..|.
T Consensus 788 ---~~~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~ 863 (876)
T d1qgra_ 788 ---MLV-QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLAR 863 (876)
T ss_dssp ---GGS-GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHH
Confidence 000 011112222111 123456778999999999999987776544433 66667777778889999998887
Q ss_pred HHHHHHH
Q 000201 1144 RALGELV 1150 (1866)
Q Consensus 1144 ~~L~~lv 1150 (1866)
.+...+-
T Consensus 864 ~~~~~~~ 870 (876)
T d1qgra_ 864 WATKELR 870 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-21 Score=269.75 Aligned_cols=737 Identities=15% Similarity=0.184 Sum_probs=481.9
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh----
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD---- 443 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~---- 443 (1866)
+..+|+...++|+.+|++|.+.|..+.++. |+.+.. |...+.. .. .+.++|..++..|++...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~----L~~i~~~---~~-----~~~~iR~~A~i~lKn~i~~~~~ 70 (876)
T d1qgra_ 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVE----LSRVLAN---PG-----NSQVARVAAGLQIKNSLTSKDP 70 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC---TT-----SCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHH----HHHHHhc---CC-----CCHHHHHHHHHHHHHHhhcccc
Confidence 456787778999999999999999987654 444433 2222211 11 145799999999997643
Q ss_pred -----------hcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHH-hhcccchhhhHHHHHHhhcCCCCChhhhh
Q 000201 444 -----------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIID-KHGRDNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 444 -----------~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~-~~g~~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
.++++....+...++ .++.+++. ++..+..+...+.. ..+.+.|+.+++.+-..+.+++.. .
T Consensus 71 ~~~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~----~ 144 (876)
T d1qgra_ 71 DIKAQYQQRWLAIDANARREVKNYVL-HTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST----E 144 (876)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC----H
T ss_pred chhhhhhcccccCCHHHHHHHHHHHH-HHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCc----H
Confidence 122333334444454 34555554 44455555444433 345578999999887777654432 4
Q ss_pred hHHHHHHHHHHHHhhhhccC--CcchHHHHHHHHHhcCC--CcHHHHHHHHhhhhhhhHhhh-----hhhHHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQ-----DEAPTLVSRLLDQ 582 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~~--~~~~v~~~~~~~l~~lv~~~~-----~~~~~~l~~ll~~ 582 (1866)
.+|++++.+++.++..+.+. .++...+++.++..+.+ ++.+++..+..++........ ......+.+.+..
T Consensus 145 ~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~ 224 (876)
T d1qgra_ 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (876)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 68999999999998766542 34567888889988865 456788888887765554332 1233445555666
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc-----------
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR----------- 649 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~----------- 649 (1866)
+..++++.+|..+..++..++......... ...+.+.+.....+. +...+..++..+..+++....
T Consensus 225 ~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 303 (876)
T d1qgra_ 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 667788899999999999999865322111 112444444455544 445555566666666652110
Q ss_pred ---------C-chhcHHhHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 650 ---------L-FEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 650 ---------~-~~p~v~~llp~ll~~~~-------D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
. ...+...++|.+...+. +....+|.++..++..++...+...++.++|.+.+.+.+.+|+.|
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r 383 (876)
T d1qgra_ 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHH
Confidence 0 11233456666666554 234569999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-----hHHhHHHHHHHhhCCC
Q 000201 713 QSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDP 786 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~i~~lv~~L~~~l~d~ 786 (1866)
.+++..++.+..+. +..+...++.+++.+...+.|+++.||.+++++++.+++.+.+. .+..+++.+...+.+
T Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 462 (876)
T d1qgra_ 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-
Confidence 99999999998765 56678888999999999999999999999999999999876532 234444444444432
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc------------CCCcchhhhH
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV------------TEPKDMIPYI 854 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l------------~~~~~l~~~~ 854 (1866)
++.++..++.++.+++... .....+.+|.
T Consensus 463 ---------------------------------------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (876)
T d1qgra_ 463 ---------------------------------------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF 503 (876)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH
T ss_pred ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2344444444444444321 0113466788
Q ss_pred hhhhHHHHHHhcCC---CHhHHHHHHHHHHHHHhhcCCCC---hhh----HHHHHHHhcccCC---CH-------HHHHH
Q 000201 855 GLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPD----LVSWLLDALKSDN---SN-------VERSG 914 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~---~~~vR~~a~~aL~~l~~~~g~~~---~~~----l~~~L~~~L~~~~---~~-------~~R~~ 914 (1866)
+.+++.+...+.+. ...++..+..++..+......+. +.. +++.+...+.... .. ..+..
T Consensus 504 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (876)
T d1qgra_ 504 ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHH
Confidence 88999999888753 46788899999999888776653 222 3333333332111 11 11123
Q ss_pred HHHHHHHHHHHhChhH----HHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC-
Q 000201 915 AAQGLSEVLAALGTVY----FEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN- 987 (1866)
Q Consensus 915 a~~~L~~l~~~~g~~~----l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~- 987 (1866)
.+..+..+....|... .+.+++.+.+.+.. ++..+++.++.+++.++...|..|.+|++.++|.++..+.+..
T Consensus 584 l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~ 663 (876)
T d1qgra_ 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAE 663 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCc
Confidence 3344555666666553 34566666666543 4678999999999999999999999999999999999887543
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHH
Q 000201 988 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067 (1866)
Q Consensus 988 ~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~ 1067 (1866)
+++|..+...+..+....+.. +.|
T Consensus 664 ~~v~~~a~~~l~~l~~~~~~~----~~~---------------------------------------------------- 687 (876)
T d1qgra_ 664 YQVCLAAVGLVGDLCRALQSN----IIP---------------------------------------------------- 687 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG----GHH----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHh----hhh----------------------------------------------------
Confidence 567777766665554433211 111
Q ss_pred HHHHHHhchhhhHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC----CCH-----
Q 000201 1068 RAIIEVLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----SSS----- 1136 (1866)
Q Consensus 1068 ~~l~~~lg~~~~~~vl~~L~~~~~D--~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~----~~~----- 1136 (1866)
+.+.++..++..+++ .+..+|..++.+++.++...+..+.+|++.+++.+.+.+.. .+.
T Consensus 688 ----------~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~ 757 (876)
T d1qgra_ 688 ----------FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDY 757 (876)
T ss_dssp ----------HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHH
T ss_pred ----------hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHH
Confidence 112233333333332 34568899999999999888888889999999988776552 111
Q ss_pred --HHHHHHHHHHHHHHHHhccc----------cc---cchHHHHhccc--CCCCccchhhHHHHHHHHHHhhchhhHHhh
Q 000201 1137 --ERRQVAGRALGELVRKLGER----------VL---PSIIPILSRGL--KDPSASRRQGVCIGLSEVMASAGKSQLLSF 1199 (1866)
Q Consensus 1137 --~~R~~A~~~L~~lv~~~~~~----------~l---~~llp~L~~~L--~d~~~~vr~~a~~~L~~li~~~~~~~l~~~ 1199 (1866)
..|.....+++.++..+... .. +.++..+.... .+.+..++..++..++.++..++......+
T Consensus 758 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~ 837 (876)
T d1qgra_ 758 LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24667777777777654321 11 22222222222 234556788888889998888876544333
Q ss_pred H--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000201 1200 M--DELIPTIRTALCDSILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1200 l--~~ll~~l~~~L~d~~~~vr~~A~~al~~l~ 1230 (1866)
. +.+.+.+.....+.++..|..|..+...+.
T Consensus 838 ~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~ 870 (876)
T d1qgra_ 838 EARPMIHELLTEGRRSKTNKAKTLARWATKELR 870 (876)
T ss_dssp HTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2 556677778888899999998887766554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.2e-14 Score=182.36 Aligned_cols=383 Identities=13% Similarity=0.160 Sum_probs=264.7
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhc--
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVL-- 445 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~-- 445 (1866)
+..+++.+.++|+.+|+.|.+.+..+.+.. |+.+..++.-+. . . ..+..+|..++..|++.....
T Consensus 2 l~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~----~---~-----~~~~~~R~~A~i~lk~~l~~~~~ 69 (458)
T d1ibrb_ 2 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA----N---P-----GNSQVARVAAGLQIKNSLTSKDP 69 (458)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C---T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh----c---C-----CCCHHHHHHHHHHHHHHhhccCc
Confidence 446788888999999999999999998654 344433222221 1 1 113479999999998764321
Q ss_pred -------------CCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhh
Q 000201 446 -------------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 512 (1866)
Q Consensus 446 -------------~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~ 512 (1866)
+++....+...++ ..+.+.++.+|..+...+..+....+...|+.+++.+-..+.++... ..
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~i~~~ll-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~ 144 (458)
T d1ibrb_ 70 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNST----EH 144 (458)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCC----HH
T ss_pred hhhhHHhhhhccCCHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcch----HH
Confidence 1111223333343 34556665555443333333444556678999999777766653322 45
Q ss_pred HHHHHHHHHHHHhhhhccC--CcchHHHHHHHHHhcCC--CcHHHHHHHHhhhhhhhHhhhh-----hhHHHHHHHHHHH
Q 000201 513 VREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQL 583 (1866)
Q Consensus 513 vr~~av~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~~--~~~~v~~~~~~~l~~lv~~~~~-----~~~~~l~~ll~~L 583 (1866)
++..++.+++.++...... .+....+++.++..+.+ ++.+++..+..++..++....+ .....+...+..+
T Consensus 145 ~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (458)
T d1ibrb_ 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 224 (458)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHH
Confidence 7888999998888665542 24567788888888865 4668898888887766543321 2233444555666
Q ss_pred HcCCChhHHHHHHHHHHHHHhhhCcchhhh--cch-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc-----------
Q 000201 584 MKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGI-AATLREGLADRNSAKRREGALLAFECLCEKLGR----------- 649 (1866)
Q Consensus 584 ~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~--~~i-i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~----------- 649 (1866)
..++++.+|..+..++..++...+. .+.. ..+ .+.+.....+ .+...+..++..+..+++....
T Consensus 225 ~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 302 (458)
T d1ibrb_ 225 TQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 302 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 6778889999999999999886542 2211 123 3334444444 4456777788888888763210
Q ss_pred -----C-----chhcHHhHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 650 -----L-----FEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 650 -----~-----~~p~v~~llp~ll~~~~-------D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
. .......+.|.+..... |.+..+|..+..++..++...+...++.++|.+.+.+.+++|++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r 382 (458)
T d1ibrb_ 303 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 382 (458)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHH
Confidence 0 11224456666666554 345579999999999999988877778999999999999999999
Q ss_pred HHHHHHHHHHHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch
Q 000201 713 QSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 770 (1866)
++|+.+|+.+++++ ++.+..+++.++|.+...++|+++.||.+|+++|+++++.+.++
T Consensus 383 ~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999865 55667789999999999999999999999999999999887654
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.8e-13 Score=171.38 Aligned_cols=391 Identities=16% Similarity=0.233 Sum_probs=273.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcC---------
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMG--------- 888 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g--------- 888 (1866)
..+-+.+.++|..|.+.+..+... + .+..+..+...+.+. ...+|..|+..|........
T Consensus 7 ~~~~s~d~~~r~~A~~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 7 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 334456788898888888887751 1 123344455555433 46788888777766654322
Q ss_pred ------CCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHH
Q 000201 889 ------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 959 (1866)
Q Consensus 889 ------~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~ 959 (1866)
++....+.+.+++.+.++.. .+..++..++.++... +...++++++.+.+.+.++ ++..+.+++.+++.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 155 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETY--RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 155 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCS--SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 12233466667777766543 3455677777766654 4456788899998887654 67789999999999
Q ss_pred hhhhhc-hhhHhHHHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHhhccc-----chhchHHhHhcccCCCchHHHHH
Q 000201 960 LPRSLG-VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1031 (1866)
Q Consensus 960 L~~~~g-~~f~~~l~~il~~ll~~l~d--~~~~VR~~a~~al~~i~~~~~~~-----~i~~llp~l~~~l~d~~w~vR~~ 1031 (1866)
+....+ ..+.++...+++.++..+.+ ...++|..+++++..+....... ....+.+.+.....+++|++|..
T Consensus 156 ~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (458)
T d1ibrb_ 156 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235 (458)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHH
Confidence 987765 55667889999999998864 45689999999888776543221 12235566667778899999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 000201 1032 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVA 1110 (1866)
Q Consensus 1032 s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~-vl~~L~~~~~D~~~~vR~~A~~~l~~l~~ 1110 (1866)
+++.++.++...+.... .+... +...+.....+....++..|+..|..++.
T Consensus 236 ~~~~l~~i~~~~~~~~~----------------------------~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 287 (458)
T d1ibrb_ 236 ALQNLVKIMSLYYQYME----------------------------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287 (458)
T ss_dssp HHHHHHHHHHHCGGGCT----------------------------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH----------------------------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999998765432110 00001 11112233456667888889988887763
Q ss_pred cCh---------------------hhHHHhHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHhccccccchH
Q 000201 1111 NTP---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSII 1162 (1866)
Q Consensus 1111 ~~p---------------------~~l~~~l~~l~~~L~~~l~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1162 (1866)
... ......++.+.+.+...+. +.++..|..+..++..++...+...++.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~ 367 (458)
T d1ibrb_ 288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 367 (458)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHH
Confidence 211 1123345566666655543 234568999999999999999988899999
Q ss_pred HHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh-HhhH
Q 000201 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-IDEI 1241 (1866)
Q Consensus 1163 p~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~-~~~i 1241 (1866)
+.+.+.+.++++.+|.+++.+|+.+...+.+..+.++++.+++.+...+.|+++.||.+|+.+++.+.+.++... .+.+
T Consensus 368 ~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~ 447 (458)
T d1ibrb_ 368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 447 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999876666666788999999999999999999999999999999988776532 2444
Q ss_pred HHHHHHhc
Q 000201 1242 VPTLLHAL 1249 (1866)
Q Consensus 1242 lp~Ll~~L 1249 (1866)
+|.++..|
T Consensus 448 l~~ll~~l 455 (458)
T d1ibrb_ 448 LAPLLQCL 455 (458)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56555443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1.7e-09 Score=148.60 Aligned_cols=256 Identities=11% Similarity=0.142 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc------CCCChhhHHHHHHHHHHHHhhCh--h----------hHH
Q 000201 670 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL------EDKAWRTKQSSVQLLGAMAYCAP--Q----------QLS 731 (1866)
Q Consensus 670 ~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L------~~~~w~~r~~a~~~L~~l~~~~~--~----------~~~ 731 (1866)
....|.++...+..++...+......+++.+.+.+ .+.+|+.|.+++.+++++..... . ++.
T Consensus 374 ~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 453 (959)
T d1wa5c_ 374 TDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (959)
T ss_dssp --CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHH
Confidence 44678888899999888776655555555554444 24689999999999999875321 0 122
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchh
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l 811 (1866)
..+...+...+....++++.+|..++++++.+......+....+++.+...+.
T Consensus 454 ~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~--------------------------- 506 (959)
T d1wa5c_ 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ--------------------------- 506 (959)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT---------------------------
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhC---------------------------
Confidence 22222222223334567788999999999999877655444555555555444
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC---------CcchhhhHhhhhHHHHHHhcCCCHhHH-----HHHH
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE---------PKDMIPYIGLLLPEVKKVLVDPIPEVR-----SVAA 877 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~---------~~~l~~~~~~ll~~L~~~l~d~~~~vR-----~~a~ 877 (1866)
+.+..+|..|+.++..++..... ...+.||++.++..+...+.+...... ..+.
T Consensus 507 ------------~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll 574 (959)
T d1wa5c_ 507 ------------TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574 (959)
T ss_dssp ------------CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred ------------CCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 44556667777777777653321 235778999999999888865443322 3478
Q ss_pred HHHHHHHhhcCCC---ChhhHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHhccCC
Q 000201 878 RAIGSLIRGMGEE---NFPDLVSWLLDAL----KSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQR 946 (1866)
Q Consensus 878 ~aL~~l~~~~g~~---~~~~l~~~L~~~L----~~~~~~~~R~~a~~~L~~l~~~~g~~~l----~~ll~~l~~~l~~~~ 946 (1866)
.++..++...++. +.+.+++.+...+ .++.+........++++.++...|.+.. +.++|.+...++...
T Consensus 575 ~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~ 654 (959)
T d1wa5c_ 575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI 654 (959)
T ss_dssp HHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccc
Confidence 8888888888765 3445555554433 2333444556677778888777666533 445566655555555
Q ss_pred hhHHhHHHHHHHHhhhhh
Q 000201 947 ASVRDGYLTLFKYLPRSL 964 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~ 964 (1866)
....+.++.++..+....
T Consensus 655 ~~~~~~~~~l~~~~~~~~ 672 (959)
T d1wa5c_ 655 QEFIPYVFQIIAFVVEQS 672 (959)
T ss_dssp TTTHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 555666666666555444
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.5e-10 Score=145.34 Aligned_cols=461 Identities=12% Similarity=0.069 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcc--hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 574 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 574 ~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~--~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
..++.+...| ++++..+|+.|+..+..+...-... .....++++.|...+.+..+...++.|..++..++..... .
T Consensus 17 ~aip~L~~lL-~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~-~ 94 (529)
T d1jdha_ 17 RAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-L 94 (529)
T ss_dssp CHHHHHHHHH-TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH-H
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-H
Confidence 3455555444 5667788999999998887643211 1223367888888887777777888888888887643221 1
Q ss_pred hhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC
Q 000201 652 EPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 726 (1866)
Q Consensus 652 ~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~ 726 (1866)
...+ ...+|.+...++++++.++..|.+++..++..-... .+ ...+|.++..|++++..++..++.+|+.++...
T Consensus 95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 174 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence 1112 246899999999999999999999999887654432 12 457899999999999999999999999998765
Q ss_pred hhhH-HhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccch--hH-HhHHHHHHHhhCCCChhHH-HHHHHHHhc
Q 000201 727 PQQL-SQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EI-ASLVPTLLMGLTDPNDHTK-YSLDILLQT 800 (1866)
Q Consensus 727 ~~~~-~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~--~i-~~lv~~L~~~l~d~~~~vr-~al~~L~~~ 800 (1866)
+..- ...-...++.+..++. .+++.++..+.+++..++..-.+. .+ ...++.+...+.+++..++ .++..+...
T Consensus 175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 4331 1112345677777775 445789999999999887533222 11 4578888999988887665 455555442
Q ss_pred cccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchh-hhHhhhhHHHHHHhc--CCCHhHHHHHH
Q 000201 801 TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLV--DPIPEVRSVAA 877 (1866)
Q Consensus 801 ~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~-~~~~~ll~~L~~~l~--d~~~~vR~~a~ 877 (1866)
.... .........+|.+.+.+.+.+.+++..++.++++++. +...... -.-...++.+...+. .+.+.++..+.
T Consensus 255 s~~~-~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~ 331 (529)
T d1jdha_ 255 SDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccc-cchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc--chhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHH
Confidence 1111 1112235678999999999999999999999999975 2211101 011234555555542 45678888899
Q ss_pred HHHHHHHhhcCCC-C------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCC-
Q 000201 878 RAIGSLIRGMGEE-N------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQR- 946 (1866)
Q Consensus 878 ~aL~~l~~~~g~~-~------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~- 946 (1866)
.++..++...... . ....++.+...+..+.+......++..+..++...... .+ ...++.+++.+.+.+
T Consensus 332 ~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~ 411 (529)
T d1jdha_ 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp HHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCH
Confidence 9998887533221 0 12346777778877666555666666666654322211 11 223444444443221
Q ss_pred ---------------------hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 000201 947 ---------------------ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 947 ---------------------~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~ 1005 (1866)
..+.+.+..++..++........---...++.+...+.++++++|..+..++..+...-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 491 (529)
T d1jdha_ 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp HHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence 23445555556555543222111011346788999999999999999999887765321
Q ss_pred cc-cch--hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1006 AT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1006 ~~-~~i--~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.. +.+ ...++.+.+.+.+.++.+|..+...+..+
T Consensus 492 ~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 10 111 11567788888899999999888777653
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.8e-07 Score=127.96 Aligned_cols=712 Identities=11% Similarity=0.075 Sum_probs=361.1
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcCCC-----Ch-----
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-----NF----- 892 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g~~-----~~----- 892 (1866)
.++++|+.|.+-+..+.. .| .....|...+.++ ...+|..|+-.+...+...-.+ .+
T Consensus 15 ~~~~~~k~Ae~~L~~~~~---~p--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k 83 (959)
T d1wa5c_ 15 VIASTAKTSERNLRQLET---QD--------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (959)
T ss_dssp TSGGGHHHHHHHHHHHHT---ST--------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred CChHHHHHHHHHHHHHHc---CC--------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHH
Confidence 356789999998887754 21 2333344444433 4679999999998888754211 12
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch------
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV------ 966 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~------ 966 (1866)
..+-..++..+.+. +..+|...+.+++.+++.-+++.|++++|.+.+.++++++..+.+++.++..++..+..
T Consensus 84 ~~Ik~~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~ 162 (959)
T d1wa5c_ 84 ELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDE 162 (959)
T ss_dssp HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 12445556666543 34588899999999999877888999999999999999999999999999988865431
Q ss_pred ---hhHhHHHHHHHHHHhhc-------cCCCh--HHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 967 ---QFQNYLQQVLPAILDGL-------ADENE--SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 967 ---~f~~~l~~il~~ll~~l-------~d~~~--~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
.+...++.+.+.+...+ ..... ..-......+..+.+.+.......+-+.+.+ +. ..-++
T Consensus 163 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 234 (959)
T d1wa5c_ 163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED-----NI---QVGMG 234 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH-----TH---HHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-----HH---HHHHH
Confidence 11112223333332221 11110 0000111111111111100000000000000 00 00011
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
.+..++... ... . ...+++. ..+....++.....++..+....+.
T Consensus 235 ~~~~~l~~~----~~~-~-~~~~~~~-----------------------------~~~~~~~~~~~i~~~l~~~~~~~~~ 279 (959)
T d1wa5c_ 235 IFHKYLSYS----NPL-L-EDPDETE-----------------------------HASVLIKVKSSIQELVQLYTTRYED 279 (959)
T ss_dssp HHHHHHSCC----SCC-C-C-----------------------------------CCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcc----ccc-c-cCchhhh-----------------------------hhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 111111100 000 0 0000000 0111234666777777778887888
Q ss_pred hHHHhHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHH-HHHHHHH
Q 000201 1115 TLKEIMPVLMNTLISSLA-----SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVC-IGLSEVM 1188 (1866)
Q Consensus 1115 ~l~~~l~~l~~~L~~~l~-----~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~-~~L~~li 1188 (1866)
.+.++++.+++.+...+. .........+...+..+++.......-...+.+ ...+ ..+...+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l------------~~i~~~li~~~~ 347 (959)
T d1wa5c_ 280 VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAM------------NNITEQIILPNV 347 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHH------------HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH------------HHHHHHHHHHHh
Confidence 787888777776655443 123344444555554444321110000000000 0000 0000010
Q ss_pred HhhchhhHHhhHhhHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhcc---CC-CchhHHHHHHH
Q 000201 1189 ASAGKSQLLSFMDELIPTIRTALC-DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE---DD-QTSDTALDGLK 1263 (1866)
Q Consensus 1189 ~~~~~~~l~~~l~~ll~~l~~~L~-d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~---~~-~~~~~al~~l~ 1263 (1866)
...+.+...+...-...+..-.. +.....|.+|...+..+....+......+++.+...+. +. .......++
T Consensus 348 -~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~-- 424 (959)
T d1wa5c_ 348 -TLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDL-- 424 (959)
T ss_dssp -SCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHH--
T ss_pred -cCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHH--
Confidence 11111111111111111122111 12234567777777777766655443333333322221 11 100000000
Q ss_pred HHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHh------------CCCchhhHhhHHHHHHHhcCCCCHHHHHHH
Q 000201 1264 QILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA------------GPGLNFHLGTILPALLSAMGDDDMDVQSLA 1331 (1866)
Q Consensus 1264 ~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~------------g~~l~~~l~~il~~L~~~l~~~~~~vr~~a 1331 (1866)
...+++++.... ...+.+++...+...+....+....+|..+
T Consensus 425 --------------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~ 478 (959)
T d1wa5c_ 425 --------------------------YIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDA 478 (959)
T ss_dssp --------------------------HHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHH
T ss_pred --------------------------HHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 011222222110 012333333333333444455667889999
Q ss_pred HHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc-----------cchhhhhHHHHHHHHHHHhC
Q 000201 1332 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-----------KLYLVDEAPNMISTLIVLLS 1400 (1866)
Q Consensus 1332 ~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~-----------~~~~~~~~~~il~~L~~ll~ 1400 (1866)
..+++........+....+++.++..+.+++..+|..|+.++..++... ...+.+|++.++..++..+.
T Consensus 479 ~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~ 558 (959)
T d1wa5c_ 479 IKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALIL 558 (959)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHH
Confidence 9999888876667778899999999999999999999999999997632 24577899999999998886
Q ss_pred CCChhH-----HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhh
Q 000201 1401 DSDSTT-----VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 1475 (1866)
Q Consensus 1401 d~~~~v-----~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L 1475 (1866)
+..... ......++..++...+....| +...+.+.+ .+.+.+..
T Consensus 559 ~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~-~~~~i~~~l------------------------------~~~~~~~~ 607 (959)
T d1wa5c_ 559 KHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFPQLLAQF------------------------------IEIVTIMA 607 (959)
T ss_dssp TTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHHHHHHHH------------------------------HHHHHHHT
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------------------------------HHHHHHHh
Confidence 544322 233566666666554432221 111111111 11111111
Q ss_pred cc-CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 000201 1476 IS-GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554 (1866)
Q Consensus 1476 ~~-~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~ 1554 (1866)
.+ .++.......++++.++...+++.+..+...+++.+...+... ..+....++..+..+....+. +.+.+.++.+.
T Consensus 608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~ 685 (959)
T d1wa5c_ 608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQSAT-IPESIKPLAQP 685 (959)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHCSS-CCTTTGGGHHH
T ss_pred cCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 11 2355666778889999887766667777777888777777653 344566778888877776653 33333334444
Q ss_pred HHHH-hcCCCHHHHHHHHHHHHHHHhc----cCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHH
Q 000201 1555 FIKC-LQDSTRTVRSSAALALGKLSAL----STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRV 1629 (1866)
Q Consensus 1555 l~~~-l~d~~~~vR~~Aa~aLg~L~~~----~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i 1629 (1866)
++.. +.+... ........+-.++.. -.....++.-+...+.... .....+..+..++...+.....++.+.+
T Consensus 686 l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii~~~~~~~~~~~l~~i 762 (959)
T d1wa5c_ 686 LLAPNVWELKG-NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQI 762 (959)
T ss_dssp HTSGGGGCCTT-THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HhhHHHHHHhh-hHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHHHHCchhhhHhHHHHH
Confidence 4332 222222 222233333333222 1233344444444444332 2345667777888877765555788889
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcChhHHHHHH
Q 000201 1630 YSVLKDLVYHD-DDHVRVSAASILGIMSQCMEDGQLADLL 1668 (1866)
Q Consensus 1630 ~~~L~~~l~~~-~~~vr~~aa~~l~~L~~~~~~~~~~~~l 1668 (1866)
+..+...+... ...+.....-+++.++...+++.+.+++
T Consensus 763 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 802 (959)
T d1wa5c_ 763 AVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI 802 (959)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 88888777654 3555556666677776554443333333
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.3e-09 Score=138.65 Aligned_cols=464 Identities=13% Similarity=0.064 Sum_probs=296.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh-----hhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC-cch
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 610 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~-----~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g-~~~ 610 (1866)
..++.+++.|++.+..++..++.++..+...... .....++.+...|...++...++.|+..|..+..... ...
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 3578889999999989999999888776533221 1245677777777667778899999999998876432 122
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc-HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~-v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+...+.++.|...+.+. +...+..|..++..++......-... -...+|.+...++++++.++..+..++..++..-.
T Consensus 97 i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence 33446788888888764 56788888999998887644311111 23578999999999999999999999998875422
Q ss_pred Hhh---H-HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 690 AQG---V-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 690 ~~~---v-~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
... . ...++.+...+.+ +....+..++.++..++........-.-...++.+..++.+.+++++..+++++..+.
T Consensus 176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls 255 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence 221 1 3356777777754 4578888899999988764332211111367888999999999999999999999987
Q ss_pred hhccch-hHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCC--cchhhhHHHHHHHhh--cCCCHHHHHHHHHHHH
Q 000201 765 SVIKNP-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD--APSLALLVPIVHRGL--RERSAETKKKAAQIVG 838 (1866)
Q Consensus 765 ~~i~~~-~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~--~~~l~~l~p~L~~~l--~d~~~~vr~~a~~~l~ 838 (1866)
...... .....++.|.+.+.+++..++ .+...+......+... .-.-...++.+...+ ...+.+++..++.++.
T Consensus 256 ~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~ 335 (529)
T d1jdha_ 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhh
Confidence 654432 236788999999988887776 3455554422111100 001123455555544 3456788889999999
Q ss_pred HHhhhcCCCcchhhh--HhhhhHHHHHHhcCC-CHhHHHHHHHHHHHHHhhcCCC-Ch--hhHHHHHHHhcccCCC----
Q 000201 839 NMCSLVTEPKDMIPY--IGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE-NF--PDLVSWLLDALKSDNS---- 908 (1866)
Q Consensus 839 ~l~~~l~~~~~l~~~--~~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l~~~~g~~-~~--~~l~~~L~~~L~~~~~---- 908 (1866)
+++............ ....++.+...+.++ .+.++..+..++..++..-... .+ ...++.+.+.+.+...
T Consensus 336 ~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~ 415 (529)
T d1jdha_ 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred cccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHH
Confidence 988632211111111 123466777777654 4567777878888776532110 00 1345555554432111
Q ss_pred -----------------HHHHHHHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 909 -----------------NVERSGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 909 -----------------~~~R~~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
...+..++..+..++...... .+ ...++.+++.+.++++.+|..+..++..++..-...-
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 495 (529)
T d1jdha_ 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 495 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 112222233333322211100 11 2356778888999999999999999998875422111
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.-.-...++.+.+.+.+.++.+|..+..++..+
T Consensus 496 ~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 111233778899999999999999998887653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=4.2e-10 Score=139.16 Aligned_cols=393 Identities=14% Similarity=0.140 Sum_probs=259.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
+..+++.+..+++.++..|..++..+.+.-.. +.+ ..++|.|++.|++ +++.+|..++.+|..++...++....
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 44556678888999999999999888654332 222 3589999999965 46789999999999999876654322
Q ss_pred h-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCC
Q 000201 733 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 807 (1866)
Q Consensus 733 ~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~ 807 (1866)
. -..++|.++.++++++++++..|+++|..++..-.+ ..+ ...++.+...+..+...
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~------------------ 156 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS------------------ 156 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG------------------
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccc------------------
Confidence 1 236889999999999999999999999998753211 011 23344444444332211
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
.........++..+.+++..... .....+...+++.+..++.+++++++..++.+++.++...
T Consensus 157 ----------------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 157 ----------------TLACGYLRNLTWTLSNLCRNKNP-APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 219 (434)
T ss_dssp ----------------GSCHHHHHHHHHHHHHHTCCCTT-CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred ----------------cchHHHHHHHHHHHHHHhhcccc-cchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh
Confidence 01112233444556666652211 1222345678899999999999999999999999987542
Q ss_pred CCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-HHHHHHHHHHHhccCChhHHhHHHHHHHH
Q 000201 888 GEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVRDGYLTLFKY 959 (1866)
Q Consensus 888 g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l~~ll~~l~~~l~~~~~~vR~~al~~l~~ 959 (1866)
.+. ....+++.+.+.+.++ +...+..++..++.++...... . -...++.+...+.++++.+|..++.++..
T Consensus 220 ~~~~~~~~~~~~~~~Lv~ll~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~ 298 (434)
T d1q1sc_ 220 NERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298 (434)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhHHHHhhcccchhcccccccc-hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence 211 1235677777777654 4557888888888776422111 1 13456778888889999999999999999
Q ss_pred hhhhhchhhHhHH-HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchh-----chHHhHhcccCCCchHHHHHHH
Q 000201 960 LPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQSSV 1033 (1866)
Q Consensus 960 L~~~~g~~f~~~l-~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~-----~llp~l~~~l~d~~w~vR~~s~ 1033 (1866)
++........... ..++|.++..+.+++.++|..+..++..+......+... .+++.+.+.+.+.+++++..++
T Consensus 299 l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l 378 (434)
T d1q1sc_ 299 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378 (434)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred hccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 9875543332233 347889999999999999999999998887654333222 2467788888888999999999
Q ss_pred HHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000201 1034 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108 (1866)
Q Consensus 1034 ~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l 1108 (1866)
..+..++....... ..+.. ....+..| .-+.+.. ..++.+..+++.|..++..+
T Consensus 379 ~~l~~ll~~~~~~~--------------~~~~~-~~~~~~~~---~~~~i~~---L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 379 DAISNIFQAAEKLG--------------ETEKL-SIMIEECG---GLDKIEA---LQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHHTTT--------------CHHHH-HHHHHHTT---SHHHHHH---HHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------CcHHH-HHHHHHcC---CHHHHHH---HHcCCCHHHHHHHHHHHHHH
Confidence 99998875432110 00111 11122221 1112222 24677889999999888654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=7e-10 Score=137.06 Aligned_cols=385 Identities=15% Similarity=0.124 Sum_probs=255.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..+ +++++..+..|+.++..++.... .+.+...+++|.|.+.+.+..++..+..++.++..++..-.....
T Consensus 15 i~~lv~~l-~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~ 93 (434)
T d1q1sc_ 15 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 93 (434)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhh
Confidence 44555544 55677888888888887765322 233445578999999997766777788888888888754322111
Q ss_pred hcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCCh-----hhHHHHHHHHHHH
Q 000201 653 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w-----~~r~~a~~~L~~l 722 (1866)
..+ ...+|.+...+.+++..+++.+.+++..++..-... .+ ...++.++..+...+. .....++..+..+
T Consensus 94 ~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 173 (434)
T d1q1sc_ 94 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 173 (434)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 112 357999999999999999999999999987533221 11 3466777777765432 2233455566666
Q ss_pred HhhChhh-HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc
Q 000201 723 AYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 723 ~~~~~~~-~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~ 801 (1866)
+...+.. .......++|.+..++++.+++++..+++++..++..- ++.. +.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~---~~~---------------------- 226 (434)
T d1q1sc_ 174 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERI---EMV---------------------- 226 (434)
T ss_dssp TCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHH---HHH----------------------
T ss_pred hhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh--hhhH---HHH----------------------
Confidence 6543322 12234578888999999999999999999999886421 1110 000
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchh-hhHhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~-~~~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
....++|.+...+++.+++++..++.++++++.. ...... -.-..+++.+..++.++++++|..+..++
T Consensus 227 --------~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L 296 (434)
T d1q1sc_ 227 --------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 296 (434)
T ss_dssp --------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred --------hhcccchhcccccccchhhhhhchhhhhhhHHhh--hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHH
Confidence 0112456667777778888999999999988752 211111 11245677888899999999999999999
Q ss_pred HHHHhhcCCC--Ch--hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHhccCChhHHh
Q 000201 881 GSLIRGMGEE--NF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE-----HILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 881 ~~l~~~~g~~--~~--~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~-----~ll~~l~~~l~~~~~~vR~ 951 (1866)
+.++....+. .+ ..+++.+++.+.+.. ..+|..++.+++.++.....+... .+++.+.+.+.+.++.++.
T Consensus 297 ~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~ 375 (434)
T d1q1sc_ 297 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375 (434)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHH
T ss_pred hhhccccchhHHHHhhhhhHHHHHHHHhccC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHH
Confidence 9998632211 11 246777777776544 568999999999988776655332 3578888999999999999
Q ss_pred HHHHHHHHhhhhhc-----hhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHH
Q 000201 952 GYLTLFKYLPRSLG-----VQFQNYLQQ--VLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 952 ~al~~l~~L~~~~g-----~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
.++.++..+..... ..+...+.. .++.+-....+++++++..|.+.+.
T Consensus 376 ~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~ 430 (434)
T d1q1sc_ 376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99998888765432 112222222 3444544556777778777665543
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=8.6e-09 Score=129.82 Aligned_cols=381 Identities=13% Similarity=0.092 Sum_probs=261.1
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hh-H-HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QG-V-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~-v-~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
..+.++.+...+..++...+..+...+..+...-.. .. + ..++|.|+..+.+ .+...+..|+.+|+.++.+.+.
T Consensus 74 ~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~ 153 (503)
T d1wa5b_ 74 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 153 (503)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 345567777778888888888888877776532111 11 2 4578999999974 5678999999999999987765
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccc
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF 802 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~ 802 (1866)
..... -..++|.+..++++++.+++..|+++|+.++..-.. ..+ ..+++.++..+.+++..++ .+...+.....
T Consensus 154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~ 233 (503)
T d1wa5b_ 154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 233 (503)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhc
Confidence 53322 246889999999999999999999999999853221 111 3578888998888776655 44444444222
Q ss_pred c--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 803 V--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 803 ~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
. ..........++|.+...+.+.+++++..++.++..++.. ........ -..+++.+...+.++++.++..++.+
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~ 311 (503)
T d1wa5b_ 234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 311 (503)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC--CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHH
Confidence 1 1122234567899999999999999999999999999862 22222222 23578889999999999999999999
Q ss_pred HHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHh
Q 000201 880 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 880 L~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~ 951 (1866)
++.++...+.. .-..+++.+...+.+. +..+|..++.+++.++...... .. ..+++.++..+.+.++.+|.
T Consensus 312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~ 390 (503)
T d1wa5b_ 312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 390 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHH
Confidence 99988633221 1124677787777654 4558889999998886532111 11 45778889999999999999
Q ss_pred HHHHHHHHhhhhhch--hhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc---------cc----hh--c
Q 000201 952 GYLTLFKYLPRSLGV--QFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---------TS----LP--L 1012 (1866)
Q Consensus 952 ~al~~l~~L~~~~g~--~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---------~~----i~--~ 1012 (1866)
.++.++..++..... ....++ ..+++.+...+...+.++...+++++..+...... .. +. .
T Consensus 391 ~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g 470 (503)
T d1wa5b_ 391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 470 (503)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCC
Confidence 999999988865432 222333 34778889999888888888888888877642211 00 00 0
Q ss_pred hHHhHhcccCCCchHHHHHHHHHHHH
Q 000201 1013 LLPAVEDGIFNDNWRIRQSSVELLGD 1038 (1866)
Q Consensus 1013 llp~l~~~l~d~~w~vR~~s~~ll~~ 1038 (1866)
.+..+.....+++..++..|.+++..
T Consensus 471 ~~~~i~~Lq~~~~~~i~~~A~~il~~ 496 (503)
T d1wa5b_ 471 GMEKIFNCQQNENDKIYEKAYKIIET 496 (503)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23334444455666676666665554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=1.4e-08 Score=127.87 Aligned_cols=385 Identities=14% Similarity=0.122 Sum_probs=258.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.+...+ .+++...+..|...+..++..-. .+.+...+++|.|.+.+....+...+..|+.++..++.+......
T Consensus 78 l~~~~~~~-~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 78 LPQMTQQL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp HHHHHHHH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444 45566677777777776654211 122334578899999887766777777788888888754332222
Q ss_pred hcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 653 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 653 p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
... ..++|.+...+.+++..++..+.+++..++..-+.. .+ ..+++.++..+.+.+...+..++.+|..++....
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~ 236 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 236 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence 222 247888888999999999999999999988643321 12 3578889999999999999999999999997642
Q ss_pred hh-HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccC
Q 000201 728 QQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 806 (1866)
Q Consensus 728 ~~-~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~ 806 (1866)
.. -......++|.+..++.+.+++++..++++|..++..- +.. +..+.
T Consensus 237 ~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~--~~~---~~~~~-------------------------- 285 (503)
T d1wa5b_ 237 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA---IQAVI-------------------------- 285 (503)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH---HHHHH--------------------------
T ss_pred cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC--chh---hhhhh--------------------------
Confidence 21 22334678999999999999999999999999887522 111 00010
Q ss_pred CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHh
Q 000201 807 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 807 ~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~ 885 (1866)
-..++|.+...+.+.++.++..++.++++++.. ....... .-..+++.+..++.++++.+|..++.+++.++.
T Consensus 286 ----~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~--~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 286 ----DVRIPKRLVELLSHESTLVQTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp ----HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ----hhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH--HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 012456677777788889999999999999862 2111111 123578889999999999999999999999875
Q ss_pred hcCCC--C--hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh--hHH-----HHHHHHHHHHhccCChhHHhHHH
Q 000201 886 GMGEE--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF-----EHILPDIIRNCSHQRASVRDGYL 954 (1866)
Q Consensus 886 ~~g~~--~--~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~--~~l-----~~ll~~l~~~l~~~~~~vR~~al 954 (1866)
..... . -..+++.+++.+.+.. ..++..++.+++.++..... +.+ ..+++.+.+.+...+..+...++
T Consensus 360 ~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L 438 (503)
T d1wa5b_ 360 GNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 438 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred ccHHHHHHHHHccccchhHHhcccCC-hhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence 32111 1 1346777777776544 45889999999888765432 222 34667888888888888888888
Q ss_pred HHHHHhhhhhch-------hhHhHHH-----HHHHHHHhhccCCChHHHHHHHHHHH
Q 000201 955 TLFKYLPRSLGV-------QFQNYLQ-----QVLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 955 ~~l~~L~~~~g~-------~f~~~l~-----~il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
.++..+...... ...+|.. ..+..+-....+++++|+..|..-+.
T Consensus 439 ~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~ 495 (503)
T d1wa5b_ 439 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888776543211 1112221 13444544556788888877755443
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=3.1e-08 Score=113.36 Aligned_cols=250 Identities=14% Similarity=0.096 Sum_probs=180.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
.+.|+.++.|+++.||..|..+|..+.. +..+|.+.+.+++++|.+|..|+..|+.+....... +.++
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~ 88 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-----DNVF 88 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-----HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-----cchH
Confidence 3456788999999999999999887632 457888899999999999999999999886543221 1223
Q ss_pred HHH-hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHH
Q 000201 739 PKL-TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 739 ~~l-~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.+ ..+++|+++.||..|+.+|+.++..-. .....+++.+...+.|+...++ .+...+.... -...++
T Consensus 89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~---------~~~~~~ 158 (276)
T d1oyza_ 89 NILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN---------DKATIP 158 (276)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHccccc-hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc---------hHHHHH
Confidence 323 336789999999999999999886432 2346788889999999988887 3555544311 123467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 896 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~ 896 (1866)
.+...+.+.++.++..+...++.+... . ....+.+...+.++++.+|..+..+++.+. . +..+
T Consensus 159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~---~~~~ 221 (276)
T d1oyza_ 159 LLINLLKDPNGDVRNWAAFAININKYD--N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D---KRVL 221 (276)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC--C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C---GGGH
T ss_pred HHHHhcccccchhhhhHHHHHHhhhcc--c--------cccchhhhhhhhhhhhhhhhhhccccchhh----h---hhhH
Confidence 788888889999998888777765441 1 235566777889999999999988887642 2 3467
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-CChhHHhHHHHHH
Q 000201 897 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 957 (1866)
Q Consensus 897 ~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-~~~~vR~~al~~l 957 (1866)
|.|++.+.++. +|..++..|+++ |. +..+|.+...+.+ ++..+|..++..+
T Consensus 222 ~~L~~~l~d~~---vr~~a~~aL~~i----g~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 222 SVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHhCChH---HHHHHHHHHHHc----CC---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 77777776532 788888888875 33 2455666666655 4788998877765
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.7e-07 Score=107.02 Aligned_cols=252 Identities=17% Similarity=0.113 Sum_probs=174.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 696 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~l 696 (1866)
.+.|.+.+++ .++..|..|+.+++.+. . ...+|.+...+.|+++.||..|..++..+..... .-+..
T Consensus 21 ~~~L~~~L~d-~~~~vR~~A~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~--~~~~~ 87 (276)
T d1oyza_ 21 DDELFRLLDD-HNSLKRISSARVLQLRG----G------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--CEDNV 87 (276)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHC----C------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--THHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhhC----C------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--cccch
Confidence 3445566665 56789998988776553 1 3578889999999999999999999887643211 12333
Q ss_pred HHHHHh-hcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 697 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 697 lp~L~~-~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
++.+.. .+++++|.+|..++..|+.+....+.. .+.+++.+...+.|.++.||..++.+++.+... ..
T Consensus 88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~-------~~ 156 (276)
T d1oyza_ 88 FNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------AT 156 (276)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcchH-------HH
Confidence 444433 457899999999999999988765432 246778888899999999999999988766531 23
Q ss_pred HHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
++.+...+.+.+..++. +...+..... ......+.+...+.+.++.+|..+...++.+..
T Consensus 157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~------------ 217 (276)
T d1oyza_ 157 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 217 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHhcccccchhhhhHHHHHHhhhc-------cccccchhhhhhhhhhhhhhhhhhccccchhhh------------
Confidence 45566667777776663 2222221111 123456777788899999999998888776532
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 920 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~ 920 (1866)
+..++.+.+.+.|+ .||..++.+|+.+. + +..+|.|...+.++++..+|..+++.|.
T Consensus 218 ~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----~---~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 218 KRVLSVLCDELKKN--TVYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----C---HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 23566667777764 58999999998764 2 3577778777777666668888887763
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5.7e-05 Score=91.69 Aligned_cols=398 Identities=13% Similarity=0.085 Sum_probs=200.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh--hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 890 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~--~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~- 890 (1866)
.+|.+.+.|++.+++++..|+.+++++|. ++. .... .-...+|.|.+++.++++++|..|+.+|+.++....+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCH-HHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 47999999999999999999999999996 222 2222 22346888999999999999999999999998432211
Q ss_pred ---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHh----------------ccCChhH
Q 000201 891 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 949 (1866)
Q Consensus 891 ---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~l~~ll~~l~~~l----------------~~~~~~v 949 (1866)
.-...++.++..+....+...|..++..+..++...... ....-++.+...+ ...++.+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 112346778887777677778888888888887643322 1122223222221 2236777
Q ss_pred HhHHHHHHHHhhhhhchhh-HhHHHHHHHHHHhhccCC------ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccC
Q 000201 950 RDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLADE------NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1022 (1866)
Q Consensus 950 R~~al~~l~~L~~~~g~~f-~~~l~~il~~ll~~l~d~------~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~ 1022 (1866)
+..++.++..++......- ......+++.+...+... ...........+........... ...+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV-PTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS-CCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHhhhh
Confidence 8877777776664432110 001112334443333211 11111111111111110000000 000000000000
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH-hcCCCcHHHHHHH
Q 000201 1023 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAA 1101 (1866)
Q Consensus 1023 d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~-~~~D~~~~vR~~A 1101 (1866)
+..........++....................+.... ..+ .....++.+.. .....+..++..+
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 --NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS---------GWL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCGG---------GGG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred --hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHH---------HHH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 00000000000100000000000000000000000000 000 11122333322 2334456777788
Q ss_pred HHHHHHHhhcChhhHHH----hH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--ccccchHHHHhcccCC--
Q 000201 1102 LHVWKTIVANTPKTLKE----IM--PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLPSIIPILSRGLKD-- 1171 (1866)
Q Consensus 1102 ~~~l~~l~~~~p~~l~~----~l--~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l~~llp~L~~~L~d-- 1171 (1866)
...+..++.+....... .+ ...++.++..+.++++.+|..++.+++.+...... .+....+|.+...+..
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 88888777543321111 11 12466777888999999999999999998753221 1222344445444432
Q ss_pred ----CCccchhhHHHHHHHHHHhhchhhHHhhH-hhHHHHHHHhhcC-CcHHHHHHHHHHHHHHH
Q 000201 1172 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1172 ----~~~~vr~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L~d-~~~~vr~~A~~al~~l~ 1230 (1866)
.+.+++..++.+|..+..... ......+ ...++.+...+.+ .++.++++|+.++..+.
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 234578889999988764332 2222222 3456777777654 56889999988887664
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.9e-05 Score=87.05 Aligned_cols=180 Identities=14% Similarity=0.060 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHHHHHhhcHh-hH--HhHHHHHH-hhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhh
Q 000201 670 VVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEV 744 (1866)
Q Consensus 670 ~~~VR~~a~~al~~i~~~l~~~-~v--~~llp~L~-~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~ 744 (1866)
+...|..|.+++..++...... .+ -.-++.++ ..+++++..+|..|+.+|+.++...+..- .-.-...+|.++.+
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 4567777888888877643321 11 12244444 57788999999999999999998766432 12224788889998
Q ss_pred cc-CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhc
Q 000201 745 LT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 823 (1866)
Q Consensus 745 L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~ 823 (1866)
++ ++++.||..|+++|..++....+.. .. + .....++.+.+.+.
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~-~~----~------------------------------~~~~gi~~L~~lL~ 154 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAGL-LQ----F------------------------------LRLDGFSVLMRAMQ 154 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHH-HH----H------------------------------HHTTHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhhH-HH----H------------------------------HHhhhhhHHHHHHh
Confidence 85 7789999999999999975432110 00 0 01123566667777
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 824 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 824 d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
+.+..++..++.++.+++.. .+.....+. ...+|.+..++.++++.+|..+..+|+.++..
T Consensus 155 ~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 155 QQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 78889999999999999873 222222222 24789999999999999999999999999864
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=0.00024 Score=85.84 Aligned_cols=376 Identities=15% Similarity=0.105 Sum_probs=191.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh---hhH--HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCc--ch
Q 000201 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EAP--TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SS 610 (1866)
Q Consensus 538 l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~---~~~--~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~--~~ 610 (1866)
.+|.+++.|+++++++|..++.+|..+.....+ ... .-++.|+. ++++++..+|..|+.+|..++..-.. ..
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD-LLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHH-HTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 368899999999999999999999887643321 111 23455554 45678889999999999999853221 22
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHc----------------CCCCHHHH
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF----------------SDQVVAVR 674 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~----------------~D~~~~VR 674 (1866)
+...+.++.+...+....+...|..+..++..++...... .......++.+...+ ...+..++
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 3344567888888877777888999999998888643321 111222233332222 33477888
Q ss_pred HHHHHHHHHHHHhhcHhhH----HhHHHHHHhhcCCC------ChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhh-
Q 000201 675 EAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE- 743 (1866)
Q Consensus 675 ~~a~~al~~i~~~l~~~~v----~~llp~L~~~L~~~------~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~- 743 (1866)
..+..++..+...-..... ..++|.+...+.+. ...........+....... ..........+..
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL----DAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTH----HHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhh----HHHHHHHHHHHHhh
Confidence 8888888776543222110 23445555444321 1122222222222211110 0000011111111
Q ss_pred ------------hccCCChHHHH-HHHHHHHHHHhhccc-h--hHHhHHHHHHHhhCCC-ChhHH-HHHHHHHhcccccc
Q 000201 744 ------------VLTDTHPKVQS-AGQTALQQVGSVIKN-P--EIASLVPTLLMGLTDP-NDHTK-YSLDILLQTTFVNT 805 (1866)
Q Consensus 744 ------------~L~D~~~~VR~-aA~~aL~~l~~~i~~-~--~i~~lv~~L~~~l~d~-~~~vr-~al~~L~~~~~~~~ 805 (1866)
.+......... .+...+......... . .....++.+...+... ++.++ .+...+........
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence 11100000000 000000000000000 0 1134556555554322 23333 22222222111110
Q ss_pred C-----Cc--chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC------CCHhH
Q 000201 806 V-----DA--PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD------PIPEV 872 (1866)
Q Consensus 806 ~-----~~--~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d------~~~~v 872 (1866)
. .. ......+|.+.+.+++.+++++..++.++++++.. +..........++.+...+.+ ..+++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~---~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v 393 (457)
T d1xm9a1 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC---hhHHHHHHHhhHHHHHHHHhccccCcCCcHHH
Confidence 0 00 01234688999999999999999999999999862 222222334456677777653 34568
Q ss_pred HHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 873 RSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 873 R~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
+..++.++..++....+. .-.+.++.|.+.+.+..+..++..++..|..+
T Consensus 394 ~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L 447 (457)
T d1xm9a1 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888887532211 01134556666555554444555555555443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.08 E-value=2.3e-07 Score=89.02 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=80.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L 745 (1866)
++|+++.||..|.++++.+ ++ ..++.|++.|.+++|.+|..++.+|+.+.. +..+|.+..++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CH----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 4688889999888887654 22 235667788999999999999999886532 34677788899
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHH-HHHH
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDI 796 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~-al~~ 796 (1866)
+|+++.||.+|+++|+.++. ...+|.+.+.+.|++..+|. |+..
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~a 107 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNY 107 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999998753 24566677777788777773 4443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=3.7e-05 Score=86.25 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHhhhC-cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcC
Q 000201 590 GERRGAAFGLAGVVKGFG-ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFS 667 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g-~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~ 667 (1866)
+.|..|...|..++.... ...+...+-++.+...+-++.++..|..|+.+++.++..-+......+ ...+|.++..+.
T Consensus 32 ~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~ 111 (264)
T d1xqra1 32 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 111 (264)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence 455556666666654321 011112233444444333445678899999999999965332111122 357888888874
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhcHhh--H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHH
Q 000201 668 -DQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKL 741 (1866)
Q Consensus 668 -D~~~~VR~~a~~al~~i~~~l~~~~--v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l 741 (1866)
++++.+|..+..++..++...++.. + ...++.+...+.+.+..++..++.+|+.++...+....... ...+|.+
T Consensus 112 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L 191 (264)
T d1xqra1 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 191 (264)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHH
Confidence 6789999999999999987554422 1 44688899999999999999999999999988765433222 2578999
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
+.+++++++.+|..|+++|..++...
T Consensus 192 ~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 192 VALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.64 E-value=2.3e-05 Score=74.56 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCC
Q 000201 629 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 708 (1866)
Q Consensus 629 ~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~ 708 (1866)
++..|..|+.+++.+ +. ..++.++..+.|+++.||..+..+++.+. ....+|.+.+.|+|++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-------DERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-------SHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-------hhhhHHHHHhhhccch
Confidence 445566666654332 21 24566778899999999999999886542 2456788889999999
Q ss_pred hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHH
Q 000201 709 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 761 (1866)
Q Consensus 709 w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~ 761 (1866)
|.+|..++.+|+.+.. +..++.+..+++|+++.||.+|..+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998742 356777888999999999999999885
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.58 E-value=8.8e-06 Score=87.56 Aligned_cols=183 Identities=20% Similarity=0.195 Sum_probs=113.9
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHH
Q 000201 702 KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 781 (1866)
Q Consensus 702 ~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~ 781 (1866)
.+|.++.|.+|..|.. .++ +..|..+++|+++.||.+|.+.|+ . +.+..
T Consensus 49 ~~l~~p~~e~Ra~Aa~-------~a~----------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~-------~~L~~ 97 (233)
T d1lrva_ 49 QYLADPFWERRAIAVR-------YSP----------VEALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA 97 (233)
T ss_dssp GGTTCSSHHHHHHHHT-------TSC----------GGGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred HHhcCCcHHHHHHHHh-------cCC----------HHHHHHHhcCCCHHHHHHHHHHcC-------H-------HHHHH
Confidence 4678899999966532 221 234667899999999999986543 1 23556
Q ss_pred hhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHH
Q 000201 782 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 861 (1866)
Q Consensus 782 ~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L 861 (1866)
++.|++..||.+...-.. .+.+...++|.++.||..+... + . .+.+
T Consensus 98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~---~-----~-----------~~~L 143 (233)
T d1lrva_ 98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQR---I-----P-----------PGRL 143 (233)
T ss_dssp TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHH---S-----C-----------GGGG
T ss_pred HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhc---c-----c-----------hhHH
Confidence 677888888843322110 1234566788999999887642 1 1 0122
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Q 000201 862 KKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 941 (1866)
Q Consensus 862 ~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~ 941 (1866)
..++.|+++.||..++.. .+. +++.. +.++.+..+|..++..+ |. +.+...
T Consensus 144 ~~L~~D~d~~VR~~aA~~-------~~~-------~~L~~-l~~D~d~~VR~~aa~~L-------~~-------~~L~~l 194 (233)
T d1lrva_ 144 FRFMRDEDRQVRKLVAKR-------LPE-------ESLGL-MTQDPEPEVRRIVASRL-------RG-------DDLLEL 194 (233)
T ss_dssp GGTTTCSCHHHHHHHHHH-------SCG-------GGGGG-STTCSSHHHHHHHHHHC-------CG-------GGGGGG
T ss_pred HHHhcCCCHHHHHHHHHh-------cCH-------HHHHH-HccCCCHHHHHHHHHhc-------Cc-------HHHHHH
Confidence 345678999999877653 232 22322 33455666888776544 32 234455
Q ss_pred hccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHH
Q 000201 942 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALG 996 (1866)
Q Consensus 942 l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~ 996 (1866)
+.++++.||..+.. . +-+.++..+.|+++.||..+.+
T Consensus 195 ~~D~d~~VR~aaae-------~-----------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 195 LHDPDWTVRLAAVE-------H-----------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGCSSHHHHHHHHH-------H-----------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred HhCCCHHHHHHHHH-------h-----------ccHHHHHHhCCCCHHHHHHHHH
Confidence 67889999876542 1 1234566778999999987653
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.04 E-value=5.9e-05 Score=80.92 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=77.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
|..+++|+++.||.+++..+ +. +.+...+.|++|.+|..++..+. .+.+
T Consensus 71 L~~Ll~D~d~~VR~~AA~~L-------p~-------~~L~~L~~D~d~~VR~~aa~~l~-----------------~~~L 119 (233)
T d1lrva_ 71 LTPLIRDSDEVVRRAVAYRL-------PR-------EQLSALMFDEDREVRITVADRLP-----------------LEQL 119 (233)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CS-------GGGGGTTTCSCHHHHHHHHHHSC-----------------TGGG
T ss_pred HHHHhcCCCHHHHHHHHHHc-------CH-------HHHHHHhcCCChhHHHHHHhccC-----------------HHHH
Confidence 34467788888888776432 21 22445567778888877654321 1234
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHh
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 821 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~ 821 (1866)
..+++|+++.||.++...+ .. +.+..++.|++..+|.++..-.. .+.+...
T Consensus 120 ~~Ll~D~d~~VR~~aa~~~-------~~-------~~L~~L~~D~d~~VR~~aA~~~~---------------~~~L~~l 170 (233)
T d1lrva_ 120 EQMAADRDYLVRAYVVQRI-------PP-------GRLFRFMRDEDRQVRKLVAKRLP---------------EESLGLM 170 (233)
T ss_dssp GGGTTCSSHHHHHHHHHHS-------CG-------GGGGGTTTCSCHHHHHHHHHHSC---------------GGGGGGS
T ss_pred HHHhcCCCHHHHHHHHhcc-------ch-------hHHHHHhcCCCHHHHHHHHHhcC---------------HHHHHHH
Confidence 5567788888887776542 11 12334566777777743321100 1334556
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 822 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 822 l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
++|.++.||..++..++ . +.+..++.|++|.||..++.
T Consensus 171 ~~D~d~~VR~~aa~~L~-------~------------~~L~~l~~D~d~~VR~aaae 208 (233)
T d1lrva_ 171 TQDPEPEVRRIVASRLR-------G------------DDLLELLHDPDWTVRLAAVE 208 (233)
T ss_dssp TTCSSHHHHHHHHHHCC-------G------------GGGGGGGGCSSHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcC-------c------------HHHHHHHhCCCHHHHHHHHH
Confidence 66777777776554321 1 12334566777777776653
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.68 E-value=0.027 Score=63.66 Aligned_cols=202 Identities=15% Similarity=0.139 Sum_probs=111.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH------
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------ 690 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~------ 690 (1866)
+.++.+.+.+++-.. -+ |...+..++... +.-.+++..+++.+.......++.+|.++.-+++.++.....
T Consensus 90 ~~~i~~~I~~~~ls~-~e-a~~~l~~l~~~~-~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~ 166 (336)
T d1lsha1 90 LLFLKRTLASEQLTS-AE-ATQIVASTLSNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP 166 (336)
T ss_dssp HHHHHHHHHTTCSCH-HH-HHHHHHHHHHTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHcCCCCH-HH-HHHHHHHHhccC-CCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 455666665544222 22 333444444322 212233333333321111124788999998888888775422
Q ss_pred -hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC-------CChHHHHHHHHHHHH
Q 000201 691 -QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------THPKVQSAGQTALQQ 762 (1866)
Q Consensus 691 -~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D-------~~~~VR~aA~~aL~~ 762 (1866)
..++.+...+.+..+..+-..+..++.+||++.. +..++.+..++.+ ..+.||.+|.+||..
T Consensus 167 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~ 236 (336)
T d1lsha1 167 DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN 236 (336)
T ss_dssp GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence 2235556666666667777778889999998763 3444555555533 357899999999998
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCC--hhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
+.... | ..+.+.++....|+. ..+| .|+..+..+ .|....+-.+....-.+++..|+......+.+
T Consensus 237 ~~~~~--p--~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~ 305 (336)
T d1lsha1 237 IAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSVALVSMVAVRLRREPNLQVASFVYSQMRS 305 (336)
T ss_dssp GGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhhcC--c--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 87642 2 122233333333443 3577 566666542 12333222222223356777887776666666
Q ss_pred Hhh
Q 000201 840 MCS 842 (1866)
Q Consensus 840 l~~ 842 (1866)
+..
T Consensus 306 la~ 308 (336)
T d1lsha1 306 LSR 308 (336)
T ss_dssp HTT
T ss_pred HHh
Confidence 665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.83 E-value=3.8 Score=45.23 Aligned_cols=131 Identities=10% Similarity=0.089 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHHHHhcC----CCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc-
Q 000201 1522 PWQVKSAILSTLSIIIRKGG----IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ- 1596 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~----~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~- 1596 (1866)
++.++..++.++|.++.+.- ..-..+++.+...+.+..+..+++-+..+.++||++.. |..-+.+..++.+-.
T Consensus 140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~~i~~l~~~l~~~~~ 217 (336)
T d1lsha1 140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PNSIKKIQRFLPGQGK 217 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GGGHHHHHTTSTTSSS
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--HhHHHHHHHHhccccc
Confidence 57888999999999988642 22344667778888888888888889999999999842 333333333333221
Q ss_pred ---cCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH
Q 000201 1597 ---VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ 1663 (1866)
Q Consensus 1597 ---~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~ 1663 (1866)
.....+|..+++||+.+.... .....+.+++++.+ ...+.++|.+|...+ ....|...
T Consensus 218 ~~~~~~~~vR~aAi~Alr~~~~~~----p~~v~~~l~~i~~n--~~e~~EvRiaA~~~l---m~t~P~~~ 278 (336)
T d1lsha1 218 SLDEYSTRVQAEAIMALRNIAKRD----PRKVQEIVLPIFLN--VAIKSELRIRSCIVF---FESKPSVA 278 (336)
T ss_dssp CCCCSCHHHHHHHHHTTTTGGGTC----HHHHHHHHHHHHHC--TTSCHHHHHHHHHHH---HHTCCCHH
T ss_pred ccccccHHHHHHHHHHHHHhhhcC----cHHHHHHHHHHHcC--CCCChHHHHHHHHHH---HhcCCCHH
Confidence 124679999999998764432 12334445554443 344677888765543 44445543
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.50 E-value=39 Score=35.61 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHHHHHhhh-Ccc-----hh-hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc--CchhcH--
Q 000201 587 DKYGERRGAAFGLAGVVKGF-GIS-----SL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR--LFEPYV-- 655 (1866)
Q Consensus 587 ~~~~~R~~A~~~L~~l~~~~-g~~-----~l-~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~--~~~p~v-- 655 (1866)
-++..|+.++..++.+.+.- |.. -+ ...+++..|....++.+ .|+. .|.+...+-+ .+..++
T Consensus 81 L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~e------iAl~-~G~mLREcik~e~lak~iL~ 153 (330)
T d1upka_ 81 IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE------IALN-CGIMLRECIRHEPLAKIILW 153 (330)
T ss_dssp SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT------THHH-HHHHHHHHHTSHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcc------hhhh-hhHHHHHHHhhHHHHHHHHc
Confidence 35778888888888888742 211 11 12356666666655443 2333 2333332211 111111
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH-------hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh-
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-------QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 727 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~-------~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~- 727 (1866)
.+-+-.++..+.-++-+|-..|..+++.+...-.. .....++..+...|.++++-+|..++.+||.+.-.-.
T Consensus 154 s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N 233 (330)
T d1upka_ 154 SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN 233 (330)
T ss_dssp SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG
T ss_pred cHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhH
Confidence 12333455677888999988888888877653321 2236677777788899999999999999999885422
Q ss_pred -hhHHhhh--cchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 728 -QQLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 728 -~~~~~~l--~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
..+..++ +.-+..++.+|+|.+..+|-.|....+-++.
T Consensus 234 ~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 234 FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 2333333 3456678889999999999999988888764
|