Citrus Sinensis ID: 000215
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1849 | 2.2.26 [Sep-21-2011] | |||||||
| P29375 | 1690 | Lysine-specific demethyla | yes | no | 0.507 | 0.555 | 0.309 | 1e-124 | |
| Q3UXZ9 | 1690 | Lysine-specific demethyla | yes | no | 0.511 | 0.559 | 0.307 | 1e-124 | |
| Q5F3R2 | 1522 | Lysine-specific demethyla | no | no | 0.505 | 0.614 | 0.301 | 1e-118 | |
| Q80Y84 | 1544 | Lysine-specific demethyla | no | no | 0.345 | 0.413 | 0.348 | 1e-114 | |
| Q9UGL1 | 1544 | Lysine-specific demethyla | no | no | 0.345 | 0.413 | 0.345 | 1e-113 | |
| Q23541 | 1477 | Lysine-specific demethyla | yes | no | 0.356 | 0.446 | 0.338 | 1e-111 | |
| Q61T02 | 1482 | Lysine-specific demethyla | N/A | no | 0.359 | 0.448 | 0.340 | 1e-110 | |
| P41230 | 1554 | Lysine-specific demethyla | no | no | 0.401 | 0.477 | 0.331 | 1e-107 | |
| Q30DN6 | 1545 | Lysine-specific demethyla | no | no | 0.386 | 0.462 | 0.325 | 1e-107 | |
| Q38JA7 | 1556 | Lysine-specific demethyla | no | no | 0.395 | 0.469 | 0.323 | 1e-106 |
| >sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 | Back alignment and function desciption |
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Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 341/1102 (30%), Positives = 519/1102 (47%), Gaps = 163/1102 (14%)
Query: 28 PSGPVYYPTEDEFKDPLEYICKIRAEAERYGICKIVPPKSWKPPFALDLGSFTFPTKTQA 87
P PV+ P+ +EF DPL +I +IR AE+ GICKI PPK W+PPFA ++ SF F + Q
Sbjct: 17 PECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPFACEVKSFRFTPRVQR 76
Query: 88 IHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDK 147
+++L+A + F + ++F E G+ L V E + LDL L GG++
Sbjct: 77 LNELEAMTRV--RLDFLDQLAKFW-ELQGSTLKIPVV-ERKILDLYALSKIVASKGGFEM 132
Query: 148 VVKEKKWGEVFRFVRSNRKISDCARHVLCQLYYKHLYDYEKYYNKLN----KEVTKGCKR 203
V KEKKW +V R +L Y + LY YE + + ++ + K
Sbjct: 133 VTKEKKWSKVGS--RLGYLPGKGTGSLLKSHYERILYPYELFQSGVSLMGVQMPNLDLKE 190
Query: 204 GLDGDVKSEDKVERSSS--------KRRRRNNCDQERVKVCHKV---------------- 239
++ +V S D KR RR E V
Sbjct: 191 KVEPEVLSTDTQTSPEPGTRMNILPKRTRRVKTQSESGDVSRNTELKKLQIFGAGPKVVG 250
Query: 240 ------DKEDELDQ------------------------------ICEQCKSGLHGEVMLL 263
DKEDE+ + +C C G + + +LL
Sbjct: 251 LAMGTKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVNFVDLYVCMFCGRGNNEDKLLL 310
Query: 264 CDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD----KDSFGFVPGKR-YTVESFRRVA 318
CD C+ +H +CL PPL VP+G+W C +C+ + +++FGF R YT++SF +A
Sbjct: 311 CDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMA 370
Query: 319 DRAKKKRFRSG--SASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRP 376
D K F +EK+FW +V +V V YG+D+ + +GSGFP V D R
Sbjct: 371 DNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFP-VKDGRR 429
Query: 377 ESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDH 436
+ + EY S WNLNN+P L+ S+L ++ +I+G+ VPWLY+GM FS+FCWH EDH
Sbjct: 430 KILPEE--EEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDH 487
Query: 437 CFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVE 496
YS+NY HWG+PK WY VP A E+VMR P+LF++QPDLL QLVT++NP+VL+E
Sbjct: 488 WSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLME 547
Query: 497 NGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHK 556
+GVPVY Q G FV+TFPR+YH+GFN G N AEAVNF ADWLP G + Y++ +
Sbjct: 548 HGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRR 607
Query: 557 AAVLSHEELLCVVAKSD--LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPR 614
V SHEEL+ +A LD ++ + +EL + +E RE + + G++ M
Sbjct: 608 HCVFSHEELIFKMAADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVL----MSEE 663
Query: 615 KCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTL 674
+ E V +E C CR +LSA+ C C P VCL H LC C +K L YR+ L
Sbjct: 664 EVFELVPDDER-QCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPL 722
Query: 675 AELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSL 734
+L L GV+V +Q + W+S
Sbjct: 723 EDLPSLLY----------------------------------GVKVR-AQSYDTWVSRVT 747
Query: 735 KVLQGLFSSDA----YGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKA 790
+ L F+ +L +AE + E D R + + + E A + L K
Sbjct: 748 EALSANFNHKKDLIELRVMLEDAEDRKYP--ENDLFRKLRDAVKEAETCASVAQLLLSKK 805
Query: 791 ENWSSLPGSDSEKVRLDCVNELLGFD----PLPCNEPGHLILQNYAEEARSLIQEI---- 842
+ P S + +L V EL F LPC + + A + ++L+ ++
Sbjct: 806 QKHRQSPDSGRTRTKL-TVEELKAFVQQLFSLPC-------VISQARQVKNLLDDVEEFH 857
Query: 843 ----NAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCP 898
A + S+L++L S L + + E +L Q + A+ W D VR +S+ P
Sbjct: 858 ERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQAR-WLDEVRLTLSD--P 914
Query: 899 AAIEIDVLYKLESEALDL------KIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKT 952
+ +DV+ KL + L + + E LL + + E C +A R S+ +
Sbjct: 915 QQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQA-RPRHSVAS 973
Query: 953 VELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILK 1012
+E ++ E + +P + LK+ A W A++ I N + +++L +
Sbjct: 974 LESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSN-----YAYLEQLESLSA 1028
Query: 1013 EGASLRIQVDDLPLVEVELKKA 1034
+G + ++++ LP VE ++ A
Sbjct: 1029 KGRPIPVRLEALPQVESQVAAA 1050
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Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9', H3 'Lys-27', H3 'Lys-36', H3 'Lys-79' or H4 'Lys-20'. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-4'. May stimulate transcription mediated by nuclear receptors. May be involved in transcriptional regulation of Hox proteins during cell differentiation. May participate in transcriptional repression of cytokines such as CXCL12. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: - |
| >sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | Back alignment and function description |
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| >sp|Q23541|KDM5_CAEEL Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans GN=rbr-2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q61T02|KDM5_CAEBR Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae GN=rbr-2 PE=3 SV=2 | Back alignment and function description |
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| >sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4 | Back alignment and function description |
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| >sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1849 | ||||||
| 356540444 | 1826 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.995 | 0.598 | 0.0 | |
| 449452470 | 1843 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.996 | 0.590 | 0.0 | |
| 356495676 | 1849 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.976 | 0.590 | 0.0 | |
| 449495879 | 1845 | PREDICTED: LOW QUALITY PROTEIN: lysine-s | 0.993 | 0.995 | 0.587 | 0.0 | |
| 357481615 | 1832 | Lysine-specific demethylase 5D [Medicago | 0.985 | 0.994 | 0.586 | 0.0 | |
| 357481613 | 1836 | Lysine-specific demethylase 5D [Medicago | 0.985 | 0.992 | 0.585 | 0.0 | |
| 357481617 | 1586 | Lysine-specific demethylase 5D [Medicago | 0.847 | 0.988 | 0.597 | 0.0 | |
| 297742526 | 1495 | unnamed protein product [Vitis vinifera] | 0.789 | 0.976 | 0.598 | 0.0 | |
| 224071864 | 1503 | jumonji domain protein [Populus trichoca | 0.685 | 0.842 | 0.679 | 0.0 | |
| 255537475 | 1509 | transcription factor, putative [Ricinus | 0.705 | 0.864 | 0.649 | 0.0 |
| >gi|356540444|ref|XP_003538699.1| PREDICTED: uncharacterized protein LOC100789512 [Glycine max] | Back alignment and taxonomy information |
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Score = 2237 bits (5797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1112/1858 (59%), Positives = 1401/1858 (75%), Gaps = 41/1858 (2%)
Query: 1 MGKGRTSAV----LGQKLSVASTSKSASLSVPSGPVYYPTEDEFKDPLEYICKIRAEAER 56
MGKG+ AV +G LSV+S++ +PSGPVYYPTEDEFKDPLEYI KIR EAE
Sbjct: 1 MGKGKPRAVEKGVVGPSLSVSSST------IPSGPVYYPTEDEFKDPLEYIYKIRPEAEP 54
Query: 57 YGICKIVPPKSWKPPFALDLGSFTFPTKTQAIHQLQARSAACDSKTFELEYSRFLKEHVG 116
+GICKIVPPK+WKPPFALDL +FTFPTKTQAIH+LQAR AACDSKTF+L+YSRFL++H G
Sbjct: 55 FGICKIVPPKTWKPPFALDLDTFTFPTKTQAIHKLQARPAACDSKTFDLDYSRFLRDHSG 114
Query: 117 TKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLC 176
K K+V FEGEELDLC LFNA KRFGGYDKVV KKWG+V RFVRS+ KISDCA+HVLC
Sbjct: 115 KKSRKRVVFEGEELDLCMLFNAVKRFGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLC 174
Query: 177 QLYYKHLYDYEKYYNKLNKEVTKGCKRGLDGDVKSEDKVERSSSKRRRR--NNCDQERVK 234
QLY +HL DYE +YN++N+ + CK+ + D KS+ V+ SK+ + + + + K
Sbjct: 175 QLYREHLCDYENFYNRMNQGTAQSCKKAVHDDHKSDHGVQSVVSKKNHKSVDGSNHKDSK 234
Query: 235 VCHKVDKEDELDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECL 294
V +E+E DQICEQCKSGLHGE+MLLCDRC+KGWH YCLSPPL+ +P GNWYC CL
Sbjct: 235 V-----QEEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLEKIPPGNWYCFNCL 289
Query: 295 NSDKDSFGFVPGKRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVM 354
NSD+DSFGFVPGK YT+E+FRR+ADR++++ F SG SRVQ+EKKFW+IVEG G VEVM
Sbjct: 290 NSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVEVM 349
Query: 355 YGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITG 414
YG+DLDTS+YGSGFPRV D +P+S+D +W EY +PWNLNNLPKLKGS+LR VHHNITG
Sbjct: 350 YGNDLDTSVYGSGFPRVTDQKPKSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITG 409
Query: 415 VMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDL 474
VMVPWLY+GMLFS+FCWHFEDHCFYSMNY HWG+ KCWYSVPGS+A AFEKVM+SSLPDL
Sbjct: 410 VMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQATAFEKVMKSSLPDL 469
Query: 475 FDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVN 534
FDAQPDLLFQLVTMLNPSVL ENGVPVYS+LQEPGNFVITFPRSYH GFN GLNCAEAVN
Sbjct: 470 FDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVN 529
Query: 535 FAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAK-SDLDSKVSPYLKRELLRVYTKE 593
FAPADWLP+G FGADLYQ+YHK AVLSHEELLCVVA+ D+D +VS YLK+E+LR+ KE
Sbjct: 530 FAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDGRVSSYLKKEMLRISDKE 589
Query: 594 RMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLE 653
+ WRE+LW+ GIIKS+ MGPRKCP+YVGTEEDP+C+IC+QYLYLSAV C CRP+ FVCLE
Sbjct: 590 KSWREKLWKNGIIKSSRMGPRKCPQYVGTEEDPSCLICQQYLYLSAVVCGCRPSTFVCLE 649
Query: 654 HWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTK 713
HWEHLCECKT KL LLYRH+LAELYDL ++D+ +SE+ +E ++++R+ S + LTK
Sbjct: 650 HWEHLCECKTVKLRLLYRHSLAELYDLAFSMDKYTSEDKAECSSVKRKPSCL---SALTK 706
Query: 714 KVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKL 773
KVKG +T +QL +WL S +LQ +F DA+ T LR+AEQFLWAG EMD+VRDMV L
Sbjct: 707 KVKGGSITFAQLATEWLLQSSTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNL 766
Query: 774 IEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAE 833
IE ++WAEGIRDC K E W + +KV L+ V+ELL F P PCNEP + L++YAE
Sbjct: 767 IEAQKWAEGIRDCATKIELWLCHQDFNVKKVHLEFVDELLKFSPAPCNEPLYHKLKDYAE 826
Query: 834 EARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCI 893
EAR LIQEI+ ALS CS +SELELLYS+A GLPI + ES+KL +ISS K W D+VRKCI
Sbjct: 827 EARLLIQEIDTALSMCSNMSELELLYSKACGLPIYVKESKKLEGKISSTKAWLDNVRKCI 886
Query: 894 SNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTV 953
S + PAA+ +DVLYKL++E +DL++ + E D+L ++ Q ESC A+C + L G M+LK V
Sbjct: 887 SARQPAALHVDVLYKLKAEFVDLQVQLLEIDVLQNLLSQVESCSAQCHDMLEGHMNLKNV 946
Query: 954 ELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKE 1013
LLL+E F V++PEL+LL+QYHSDA+ W++ ND+L + ++DQ+N +DEL I +E
Sbjct: 947 GLLLKEWDGFAVDVPELKLLRQYHSDAVSWVSHFNDVLGRVQMQEDQNNAVDELKSIFEE 1006
Query: 1014 GASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFID 1073
G SL+IQVD+LPLVE+ELKKA+CREKA D KMPL+FI+Q+ E+ +LQIE EK F++
Sbjct: 1007 GLSLKIQVDELPLVEIELKKANCREKAH---DLKMPLEFIQQLLKESTMLQIEGEKQFVN 1063
Query: 1074 LSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLK 1133
LS VLA A+ WEERA +L H+A + +FED+IRAS++IF +LPSL++V++ +S A SWL+
Sbjct: 1064 LSCVLAVAIPWEERARKMLSHEAPISDFEDMIRASENIFGILPSLNDVKDALSEANSWLR 1123
Query: 1134 NSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHAS 1193
NS+ +L S+ AS S+ ++E L+ LVSQSK +K+SL+E+ LE V+ NC W A
Sbjct: 1124 NSKPYLVSSTC---ASNSVRKVEDLQMLVSQSKHIKVSLEERGMLELVLKNCRIWGYEAC 1180
Query: 1194 SLLQDARCLLDKD--DIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNAC 1251
S+L DA+CLLD +I GL+ K+E LI ++SA G+SLGFDF+EIS+LQ +
Sbjct: 1181 SVLDDAQCLLDNSLHEINSGLT----CKVEDLIARIQSAIASGVSLGFDFNEISKLQASY 1236
Query: 1252 STLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVIS 1311
STL WCK+ALSF + SPSLEDV + VAEGLS S L LI G +WL++ALE IS
Sbjct: 1237 STLQWCKRALSFCNCSPSLEDV---LEVAEGLSHSSVSGALLKVLIDGFEWLRKALEGIS 1293
Query: 1312 APCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQS 1371
P +RCKL+D++++L + IN +F V +L AI KHKLWQ QVHQFF L ++S
Sbjct: 1294 GPRSSRRCKLTDIQDILTDYQTINMTFTAVKCQLEDAIGKHKLWQGQVHQFFGLSSRERS 1353
Query: 1372 WSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIK 1431
WS +LQLKE G+ AF C EL+ +LS+V+KVENWK RC + V + NSLL L+KI
Sbjct: 1354 WSSILQLKEHGDTIAFSCSELDLILSEVEKVENWKNRCMDKFRMLVQNGNSLLHALEKIN 1413
Query: 1432 QSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAE 1491
Q++ RSL+IY+K LC+CC DS++ EFL CS C DCYH++C+ TE D E
Sbjct: 1414 QTLDRSLFIYDKLQDLKEQNLCICCYDDSEDQEFLTCSTCMDCYHVRCVGLTEKDAG-IE 1472
Query: 1492 AYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVD 1551
Y CPYC+ E Q GG+ LRF KR +L++L EL+S +E FC I+ KD L ++V+
Sbjct: 1473 NYKCPYCEILRGEFHYQNGGALLRFVKKRVELKVLTELMSHAEHFCLWIDEKDFLCQLVE 1532
Query: 1552 VALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNL 1611
AL CK+CL +IV S +D+D+ ++S KL +KA + A V+D+ L+ LA+N
Sbjct: 1533 KALSCKSCLREIVILASANVDEDISIVSEKLATAVKASKVAIVYDQHDTCDLELTLAKNF 1592
Query: 1612 WRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVV 1671
W+++VS+LL G+ KPTI QIQ +LKEG M+ISP+DHY KL +N +G QWA++AKKV
Sbjct: 1593 WKIQVSRLLNGVPKPTIQQIQKHLKEGQAMDISPEDHYMLKLTNVNCLGLQWAELAKKVA 1652
Query: 1672 LDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEW 1731
DSGALSLDKVFEL+ EGENLPV + +EL++LRAR MLYCICRKP+D + MIACY C+EW
Sbjct: 1653 TDSGALSLDKVFELVVEGENLPVDMNEELRTLRARCMLYCICRKPFDPERMIACYHCNEW 1712
Query: 1732 YHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLR 1791
YH DC+KL E+YIC AC P E P N D T+ +F EPKTPSP+H+N RKK +
Sbjct: 1713 YHFDCMKLPCTEEVYICPACNPCTE--GLPSNHD-RLTSGKFEEPKTPSPRHSNPRKKQK 1769
Query: 1792 KAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ 1849
+ P L + A + N SSGI+ L W NRKPFRRAAKKR L SL PF+ Q+
Sbjct: 1770 RDVPSLTCNIFA-SRNQDKLRYSSGIECLRWQNRKPFRRAAKKRVELRSLSPFLCIQR 1826
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452470|ref|XP_004143982.1| PREDICTED: uncharacterized protein LOC101216734 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356495676|ref|XP_003516700.1| PREDICTED: uncharacterized protein LOC100819576 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449495879|ref|XP_004159972.1| PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5C-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357481615|ref|XP_003611093.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512428|gb|AES94051.1| Lysine-specific demethylase 5D [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357481613|ref|XP_003611092.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512427|gb|AES94050.1| Lysine-specific demethylase 5D [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357481617|ref|XP_003611094.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512429|gb|AES94052.1| Lysine-specific demethylase 5D [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297742526|emb|CBI34675.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224071864|ref|XP_002303585.1| jumonji domain protein [Populus trichocarpa] gi|222841017|gb|EEE78564.1| jumonji domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255537475|ref|XP_002509804.1| transcription factor, putative [Ricinus communis] gi|223549703|gb|EEF51191.1| transcription factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1849 | ||||||
| TAIR|locus:2031290 | 1116 | AT1G63490 [Arabidopsis thalian | 0.516 | 0.855 | 0.522 | 0.0 | |
| RGD|1305429 | 1099 | Kdm5a "lysine (K)-specific dem | 0.232 | 0.390 | 0.421 | 3.3e-124 | |
| UNIPROTKB|E9PSW7 | 1099 | Jarid1a "Protein Jarid1a" [Rat | 0.232 | 0.390 | 0.421 | 3.3e-124 | |
| FB|FBgn0031759 | 1838 | lid "little imaginal discs" [D | 0.246 | 0.247 | 0.415 | 3.7e-122 | |
| UNIPROTKB|Q30DN6 | 1545 | KDM5D "Lysine-specific demethy | 0.227 | 0.272 | 0.429 | 3.8e-122 | |
| ZFIN|ZDB-GENE-030131-5379 | 1483 | kdm5ba "lysine (K)-specific de | 0.233 | 0.291 | 0.415 | 5.3e-122 | |
| UNIPROTKB|P29375 | 1690 | KDM5A "Lysine-specific demethy | 0.232 | 0.253 | 0.426 | 1.1e-120 | |
| MGI|MGI:2136980 | 1690 | Kdm5a "lysine (K)-specific dem | 0.232 | 0.253 | 0.421 | 1.8e-120 | |
| UNIPROTKB|E9PSM3 | 1690 | Jarid1a "Protein Jarid1a" [Rat | 0.232 | 0.253 | 0.421 | 1.9e-120 | |
| UNIPROTKB|Q9UGL1 | 1544 | KDM5B "Lysine-specific demethy | 0.229 | 0.275 | 0.418 | 2.3e-120 |
| TAIR|locus:2031290 AT1G63490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2652 (938.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 509/974 (52%), Positives = 699/974 (71%)
Query: 354 MYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNIT 413
MYG+DLDTS+YGSGFPR+ D RPESV+A++W+EYC SPWNLNN+PKLKGS+L+ + HNI
Sbjct: 1 MYGNDLDTSVYGSGFPRIGDQRPESVEADIWDEYCGSPWNLNNMPKLKGSMLQAIRHNIN 60
Query: 414 GVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPD 473
GV VPWLYLGMLFS+FCWHFEDHCFYS+NY HWG+ KCWY +PGS A AFEKVMR +LPD
Sbjct: 61 GVTVPWLYLGMLFSSFCWHFEDHCFYSVNYLHWGEAKCWYGIPGSAASAFEKVMRKTLPD 120
Query: 474 LFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAV 533
LFDAQPDLLFQLVTML+P+VL EN VPVY+VLQEPGNFVITFP+S+HAGFNFGLNCAEAV
Sbjct: 121 LFDAQPDLLFQLVTMLSPTVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAV 180
Query: 534 NFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDL-DSKVSPYLKRELLRVYTK 592
NFA ADWLP+GG GA+LY+ Y K +V+SHEELLCVVAK + +++ S +LK+ELLR+Y+K
Sbjct: 181 NFATADWLPYGGSGAELYRLYRKPSVISHEELLCVVAKGNCCNNEGSIHLKKELLRIYSK 240
Query: 593 ERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCL 652
E+ WRE+LW+ GI++S+PM +C + VG EEDPTCIIC+Q+L+LSA+ C CRP+ F CL
Sbjct: 241 EKTWREQLWKSGILRSSPMFVPECADSVGIEEDPTCIICQQFLHLSAIVCNCRPSVFACL 300
Query: 653 EHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRXXXXXXXXXXXLRRQISSSNRPTTLT 712
EHW+HLCEC+ KL L YR+TLAEL + V++ +R S + R L
Sbjct: 301 EHWKHLCECEPTKLRLEYRYTLAELDMMVQEVEKFGGCKTQETKISQRPSSGTKRSIALN 360
Query: 713 KKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNK 772
KK +G++V+ ++ ++WL + KVL FSS Y TLL+E+EQFLWAG EMD VRD+
Sbjct: 361 KKQEGMQVSQARPADKWLLRASKVLDAAFSSVEYATLLKESEQFLWAGSEMDRVRDVTKS 420
Query: 773 LIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYA 832
L + + WAE + DCL K E + DS KV L+ ++ELL +P+PC G+L L++YA
Sbjct: 421 LNKAKIWAEAVSDCLSKVEGEVN---DDSMKVHLEFIDELLRVNPVPCFNSGYLKLKDYA 477
Query: 833 EEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKC 892
EEAR L ++I++ALS+ I++LELL+S S PI + + E LS++ISSAK+ ++
Sbjct: 478 EEARKLSEKIDSALSSSPTITQLELLHSEVSRSPISLKKHEILSKKISSAKMLAKRAKRY 537
Query: 893 ISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKT 952
+++ P IE+D L+KL SE L+L + +PET+ +L ++ ++ES R + ++ L GS+SL+
Sbjct: 538 LTDAKPPGIEMDALFKLNSEMLELHVQLPETEGILDLVKKSESARDKSNKVLTGSLSLEN 597
Query: 953 VELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILK 1012
VE LL E F++N+PEL +L+QYH D + WI+R ND++V++ KDQ +I +L+ +L+
Sbjct: 598 VEELLHEFDSFSINVPELNILRQYHVDTLSWISRFNDVMVDVREGKDQRKLISDLSSLLR 657
Query: 1013 EGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFI 1072
+GASL IQV+ LPLVEVELKKA CREKA + LDFI Q+ +EAVIL IE E++F+
Sbjct: 658 DGASLGIQVEGLPLVEVELKKASCREKARTVYTARKSLDFIEQLLSEAVILHIEEEEIFV 717
Query: 1073 DLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWL 1132
++SG+L+ A WEERA+ IL ++ QM E +D++R S +I VLP+L ++N IS+A++WL
Sbjct: 718 EISGILSTARCWEERASTILENETQMYELKDLVRMSVNIDAVLPTLQGIENTISSAETWL 777
Query: 1133 KNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHA 1192
+ SE FL++ ++A + CS+L L LKDLV+Q+K L + L+E LE ++ NCERWQ
Sbjct: 778 QKSEPFLSATSSMASSPCSMLELPVLKDLVTQAKLLNVQLQEPRILETLLLNCERWQCDN 837
Query: 1193 SSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACS 1252
LLQ+ LLD I DG ++++ KI LIT ++SA GL+LG +F E+ +L+ A
Sbjct: 838 HQLLQETEDLLDNAKIDDGTHSNILPKIMDLITRVDSARRSGLALGLNFDELPKLRTASL 897
Query: 1253 TLHWCKKALSFLSVSPS---LEDV--ESLMAVA----EGLSTRCFSS--MLWNSLIH--- 1298
L WC K ++ S SP+ LEDV SL + EG + L L+
Sbjct: 898 KLGWCCKTITLSSSSPTSELLEDVGKPSLQHIQQHLKEGQTLEILPEEYYLGKRLMELKD 957
Query: 1299 -GVKWLKRALEVIS 1311
G++W KRA +V++
Sbjct: 958 TGLEWAKRARKVVT 971
|
|
| RGD|1305429 Kdm5a "lysine (K)-specific demethylase 5A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PSW7 Jarid1a "Protein Jarid1a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0031759 lid "little imaginal discs" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q30DN6 KDM5D "Lysine-specific demethylase 5D" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P29375 KDM5A "Lysine-specific demethylase 5A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2136980 Kdm5a "lysine (K)-specific demethylase 5A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PSM3 Jarid1a "Protein Jarid1a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.11 | 0.691 |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1849 | |||
| pfam02373 | 114 | pfam02373, JmjC, JmjC domain, hydroxylase | 2e-50 | |
| smart00501 | 93 | smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interac | 1e-20 | |
| smart00545 | 42 | smart00545, JmjN, Small domain found in the jumonj | 3e-20 | |
| pfam02375 | 34 | pfam02375, JmjN, jmjN domain | 7e-17 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 7e-17 | |
| pfam02928 | 54 | pfam02928, zf-C5HC2, C5HC2 zinc finger | 8e-16 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 2e-15 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 2e-12 | |
| smart00558 | 58 | smart00558, JmjC, A domain family that is part of | 2e-12 | |
| pfam01388 | 90 | pfam01388, ARID, ARID/BRIGHT DNA binding domain | 4e-11 | |
| smart01014 | 88 | smart01014, ARID, ARID/BRIGHT DNA binding domain | 1e-10 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 2e-08 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 3e-08 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 2e-06 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 2e-06 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-06 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 4e-05 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 1e-04 | |
| COG5034 | 271 | COG5034, TNG2, Chromatin remodeling protein, conta | 5e-04 | |
| cd04718 | 148 | cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol | 8e-04 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 0.002 | |
| pfam08429 | 335 | pfam08429, PLU-1, PLU-1-like protein | 0.003 |
| >gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 2e-50
Identities = 61/117 (52%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 419 WLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQ 478
WLY+GM S WH ED YS+NY H+G PK WY +P A FEKV+ Q
Sbjct: 1 WLYMGMPGSTTPWHIEDQGLYSINYLHFGGPKVWYIIPSEYAEKFEKVLS---KHNGGEQ 57
Query: 479 PDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF 535
PDLL L T+++P L+ENG+PVY +Q+PG FV TFP YH FN G N AEAVNF
Sbjct: 58 PDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAEAVNF 114
|
The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114 |
| >gnl|CDD|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain) domain | Back alignment and domain information |
|---|
| >gnl|CDD|128818 smart00545, JmjN, Small domain found in the jumonji family of transcription factors | Back alignment and domain information |
|---|
| >gnl|CDD|190295 pfam02375, JmjN, jmjN domain | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
| >gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1849 | |||
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 100.0 | |
| KOG0958 | 690 | consensus DNA damage-responsive repressor GIS1/RPH | 100.0 | |
| PF08429 | 335 | PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi | 100.0 | |
| PF08429 | 335 | PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi | 100.0 | |
| PF02373 | 114 | JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 | 99.95 | |
| smart00501 | 93 | BRIGHT BRIGHT, ARID (A/T-rich interaction domain) | 99.72 | |
| smart00545 | 42 | JmjN Small domain found in the jumonji family of t | 99.71 | |
| PF01388 | 92 | ARID: ARID/BRIGHT DNA binding domain; InterPro: IP | 99.61 | |
| PF02375 | 34 | JmjN: jmjN domain; InterPro: IPR003349 Jumonji pro | 99.48 | |
| PF02928 | 54 | zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z | 99.36 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 99.29 | |
| smart00558 | 57 | JmjC A domain family that is part of the cupin met | 99.19 | |
| KOG2744 | 512 | consensus DNA-binding proteins Bright/BRCAA1/RBP1 | 99.02 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 99.01 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.73 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 98.69 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 98.56 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.39 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.15 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.1 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 98.03 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.02 | |
| KOG2510 | 532 | consensus SWI-SNF chromatin-remodeling complex pro | 97.87 | |
| KOG1632 | 345 | consensus Uncharacterized PHD Zn-finger protein [G | 97.84 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 97.8 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 97.69 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.47 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.41 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.32 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 96.98 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.14 | |
| KOG2131 | 427 | consensus Uncharacterized conserved protein, conta | 96.11 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 96.01 | |
| KOG1632 | 345 | consensus Uncharacterized PHD Zn-finger protein [G | 96.0 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 95.98 | |
| PF13621 | 251 | Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU | 95.82 | |
| KOG2130 | 407 | consensus Phosphatidylserine-specific receptor Ptd | 95.16 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 94.89 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 94.53 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 94.19 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 93.88 | |
| KOG2752 | 345 | consensus Uncharacterized conserved protein, conta | 93.63 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 93.22 | |
| KOG1844 | 508 | consensus PHD Zn-finger proteins [General function | 93.15 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 92.92 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 92.79 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 92.19 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 91.81 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 89.7 | |
| KOG1356 | 889 | consensus Putative transcription factor 5qNCA, con | 88.9 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 87.35 | |
| PF07227 | 446 | DUF1423: Protein of unknown function (DUF1423); In | 86.38 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 84.34 | |
| PF08007 | 319 | Cupin_4: Cupin superfamily protein; InterPro: IPR0 | 84.27 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 83.25 |
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=713.68 Aligned_cols=429 Identities=43% Similarity=0.858 Sum_probs=362.0
Q ss_pred hhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCcccccccC----CCCCCCccCC-cccchHHHHHHHHHHhh
Q 000215 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS----DKDSFGFVPG-KRYTVESFRRVADRAKK 323 (1849)
Q Consensus 249 C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~----~~~~fGF~~g-k~yTLeeF~~~Ad~~k~ 323 (1849)
|..|.++..+ .+++|++|++.||.+|+.||++.+|+|+|.|+.|+.+ ....|||.+| ..||+..|.+++++++.
T Consensus 158 ~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~ 236 (904)
T KOG1246|consen 158 CNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKK 236 (904)
T ss_pred hhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhc
Confidence 4556666555 4449999999999999999999999999999999876 3467899999 69999999999999999
Q ss_pred hccCCCC---cchhhhhhhhhhHhccCCCccccccccCCCCCCCCCCCCCcCCCCCCCcccccccccCCCCccccCCCCC
Q 000215 324 KRFRSGS---ASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKL 400 (1849)
Q Consensus 324 ~~f~~~~---~~~~~~E~efW~~v~~~~~~v~V~yGaDi~~~~~gSgFp~~~~~~~~~~~~~~~~~y~~~~WNL~nlp~~ 400 (1849)
.||.... .+.+++|++||++|......++|.||+|+.+..+|||||......... ...++|+.++|||||+|.+
T Consensus 237 ~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~---~~~~~y~~s~wnL~~i~~~ 313 (904)
T KOG1246|consen 237 DYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLG---SEAEKYSNSGWNLNNIPRL 313 (904)
T ss_pred cccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCC---cchhhhccCcccccccccC
Confidence 9998653 336799999999999998899999999999999999999754322211 1236899999999999999
Q ss_pred cchhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCChh
Q 000215 401 KGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPD 480 (1849)
Q Consensus 401 ~~slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~pd 480 (1849)
++|+|+|.+.+|+||++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||++|++..|+++..+||
T Consensus 314 ~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~~~pd 393 (904)
T KOG1246|consen 314 EGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFIEQPD 393 (904)
T ss_pred CccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchhchhhhHHHHHHhcCCCCC
Q 000215 481 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVL 560 (1849)
Q Consensus 481 ~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~~~~~~y~~~~~~~vf 560 (1849)
++++++++++|..|.++|||||+++|+||+||||||++||+|||+|||++|+|||||.+||++|+.++++|+...+.++|
T Consensus 394 ~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lf 473 (904)
T KOG1246|consen 394 LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLF 473 (904)
T ss_pred cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHHHHcCcccc-ccCCCCCCCCCCCCcc--ccccccccccc
Q 000215 561 SHEELLCVVAKSDLDSKVSPYL--KRELLRVYTKERMWRERLWRKGIIKS-TPMGPRKCPEYVGTEE--DPTCIICRQYL 635 (1849)
Q Consensus 561 s~~~Ll~~~A~~~~~~~~~~~l--~~~l~~~~~~E~~~r~~l~~~gi~~~-~~~~~~~~~~~~~~~~--~~~C~~C~~~~ 635 (1849)
||++|+..+|...........+ .............++...+..+++.. ++......+ ++ +++|..|+++|
T Consensus 474 s~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~c~~ck~~~ 548 (904)
T KOG1246|consen 474 SHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKYERYLLESLP-----DDMLERQCEACKRNC 548 (904)
T ss_pred CHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHHHHHHHHhcc-----chhhHHHHHHhcccH
Confidence 9999999999765332111111 00010001110111111111111111 111001111 13 68999999999
Q ss_pred cccceecccCCCceeeccchhhhccCCCCceEEEEEcCHHHHHHHHHHHhc
Q 000215 636 YLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 686 (1849)
Q Consensus 636 fls~v~c~~~~~~~~CL~h~~~~c~c~~~~~~l~yRy~~~eL~~l~~~~~~ 686 (1849)
|++++.|.|.+.++.|+.|..++|+|+...++++|||++++|..++.+++.
T Consensus 549 ~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~ 599 (904)
T KOG1246|consen 549 FLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQL 599 (904)
T ss_pred hhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhh
Confidence 999999999988999999999999999999999999999999999999855
|
|
| >KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] | Back alignment and domain information |
|---|
| >PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] | Back alignment and domain information |
|---|
| >PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] | Back alignment and domain information |
|---|
| >smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain | Back alignment and domain information |
|---|
| >smart00545 JmjN Small domain found in the jumonji family of transcription factors | Back alignment and domain information |
|---|
| >PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans | Back alignment and domain information |
|---|
| >PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [] | Back alignment and domain information |
|---|
| >PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily | Back alignment and domain information |
|---|
| >KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A | Back alignment and domain information |
|---|
| >KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG1844 consensus PHD Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1849 | ||||
| 2w2i_A | 358 | Crystal Structure Of The Human 2-Oxoglutarate Oxyge | 3e-35 | ||
| 2xml_A | 348 | Crystal Structure Of Human Jmjd2c Catalytic Domain | 5e-34 | ||
| 3dxt_A | 354 | Crystal Structure Of The Catalytic Core Domain Of J | 4e-33 | ||
| 3dxu_A | 337 | The Crystal Structure Of Core Jmjd2d Complexed With | 5e-33 | ||
| 4hon_A | 330 | Crystal Structure Of Human Jmjd2d/kdm4d In Complex | 7e-33 | ||
| 4hoo_A | 330 | Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L | 1e-32 | ||
| 2oq6_A | 381 | Crystal Structure Of Jmjd2a Complexed With Histone | 2e-32 | ||
| 2gp3_A | 349 | Crystal Structure Of The Catalytic Core Domain Of J | 3e-32 | ||
| 2p5b_A | 352 | The Complex Structure Of Jmjd2a And Trimethylated H | 3e-32 | ||
| 2pxj_A | 347 | The Complex Structure Of Jmjd2a And Monomethylated | 4e-32 | ||
| 2wwj_A | 348 | Structure Of Jmjd2a Complexed With Inhibitor 10a Le | 4e-32 | ||
| 3opt_A | 373 | Crystal Structure Of The Rph1 Catalytic Core With A | 1e-30 | ||
| 2e6r_A | 92 | Solution Structure Of The Phd Domain In Smcy Protei | 1e-07 | ||
| 2ysm_A | 111 | Solution Structure Of The First And Second Phd Doma | 2e-07 | ||
| 3ask_A | 226 | Structure Of Uhrf1 In Complex With Histone Tail Len | 1e-06 | ||
| 4gy5_A | 241 | Crystal Structure Of The Tandem Tudor Domain And Pl | 1e-06 | ||
| 1wem_A | 76 | Solution Structure Of Phd Domain In Death Inducer- | 2e-06 | ||
| 3zvy_A | 72 | Phd Finger Of Human Uhrf1 In Complex With Unmodifie | 1e-05 | ||
| 3sou_A | 70 | Structure Of Uhrf1 Phd Finger In Complex With Histo | 2e-05 | ||
| 3shb_A | 77 | Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 | 2e-05 | ||
| 2lgg_A | 69 | Structure Of Phd Domain Of Uhrf1 In Complex With H3 | 2e-05 | ||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 3e-05 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 6e-05 | ||
| 3t6r_A | 72 | Structure Of Uhrf1 In Complex With Unmodified H3 N- | 6e-05 | ||
| 1f62_A | 51 | Wstf-Phd Length = 51 | 7e-05 | ||
| 2f6j_A | 174 | Crystal Structure Of Phd Finger-Linker-Bromodomain | 8e-05 | ||
| 3qzv_A | 174 | Crystal Structure Of Bptf Phd-Linker-Bromo In Compl | 8e-05 | ||
| 2kwj_A | 114 | Solution Structures Of The Double Phd Fingers Of Hu | 1e-04 | ||
| 2ln0_A | 110 | Structure Of Moz Length = 110 | 1e-04 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 1e-04 | ||
| 3v43_A | 112 | Crystal Structure Of Moz Length = 112 | 1e-04 | ||
| 3zvz_B | 57 | Phd Finger Of Human Uhrf1 Length = 57 | 2e-04 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-04 | ||
| 3o70_A | 68 | Phd-Type Zinc Finger Of Human Phd Finger Protein 13 | 2e-04 | ||
| 2fui_A | 62 | Nmr Solution Structure Of Phd Finger Fragment Of Hu | 3e-04 | ||
| 2lv9_A | 98 | Solution Nmr Structure Of The Phd Domain Of Human M | 3e-04 | ||
| 2puy_A | 60 | Crystal Structure Of The Bhc80 Phd Finger Length = | 4e-04 | ||
| 2e6s_A | 77 | Solution Structure Of The Phd Domain In Ring Finger | 5e-04 | ||
| 2yql_A | 56 | Solution Structure Of The Phd Domain In Phd Finger | 5e-04 |
| >pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 | Back alignment and structure |
|
| >pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 | Back alignment and structure |
| >pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 | Back alignment and structure |
| >pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 | Back alignment and structure |
| >pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 | Back alignment and structure |
| >pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 | Back alignment and structure |
| >pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 | Back alignment and structure |
| >pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 | Back alignment and structure |
| >pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 | Back alignment and structure |
| >pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 | Back alignment and structure |
| >pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 | Back alignment and structure |
| >pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 | Back alignment and structure |
| >pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 | Back alignment and structure |
| >pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 | Back alignment and structure |
| >pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 | Back alignment and structure |
| >pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 | Back alignment and structure |
| >pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer- Obliterator 1(Dio-1) Length = 76 | Back alignment and structure |
| >pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 | Back alignment and structure |
| >pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 | Back alignment and structure |
| >pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 | Back alignment and structure |
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
| >pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|1F62|A Chain A, Wstf-Phd Length = 51 | Back alignment and structure |
| >pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 | Back alignment and structure |
| >pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 | Back alignment and structure |
| >pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 | Back alignment and structure |
| >pdb|2LN0|A Chain A, Structure Of Moz Length = 110 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112 | Back alignment and structure |
| >pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 | Back alignment and structure |
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|3O70|A Chain A, Phd-Type Zinc Finger Of Human Phd Finger Protein 13 Length = 68 | Back alignment and structure |
| >pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human Bptf In Free State Length = 62 | Back alignment and structure |
| >pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 | Back alignment and structure |
| >pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 | Back alignment and structure |
| >pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77 | Back alignment and structure |
| >pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 8e-79
Identities = 65/416 (15%), Positives = 123/416 (29%), Gaps = 44/416 (10%)
Query: 295 NSDKDSFGFVPGKRYTVESFRRVADRAKKKRFRS--GSASRVQMEKKFWEIVEGAAGNVE 352
+ + + + + A S + K + ++ N
Sbjct: 143 DPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSG 202
Query: 353 VMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKL-----KGSILRM 407
T +G+ D + ++ L LP G++L
Sbjct: 203 RRRKGPFKTIKFGTNI-----------DLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSH 251
Query: 408 VHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVM 467
V H I G+ LY+ + S H E++ F S+N + W+ VP G
Sbjct: 252 VGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFC 311
Query: 468 RSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGL 527
+ + N L E VPVY +Q PG+ V + H G
Sbjct: 312 EKNNLNFLMGS--------WWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGW 363
Query: 528 NCAEAVNFAPADWLPH--GGFGADLYQQYHKAAVLSHEELLCVVAKS--DLDSKVSPYLK 583
A N P + + + +++ L +A++ D K+ +K
Sbjct: 364 CNNIAWNVGPLTACQYKLAVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIK 423
Query: 584 RELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACR 643
LLR + + RE L G ++ P + C IC ++
Sbjct: 424 YCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAH-------YCSICEVEVFDLLFVTN 476
Query: 644 ----CRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF--LTVDRNSSEETS 693
+ C + +L ++ + +L ++ T+ +S
Sbjct: 477 ESNSRKTYIVHCQDCARKTSGNL-ENFVVLEQYKMEDLMQVYDQFTLAPPLPSASS 531
|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 | Back alignment and structure |
|---|
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 | Back alignment and structure |
|---|
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 | Back alignment and structure |
|---|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 | Back alignment and structure |
|---|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 | Back alignment and structure |
|---|
| >1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A Length = 128 | Back alignment and structure |
|---|
| >2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A Length = 125 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A Length = 107 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} Length = 121 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} Length = 107 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} Length = 116 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 122 | Back alignment and structure |
|---|
| >1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A Length = 123 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A Length = 117 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Length = 177 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1849 | |||
| 2ox0_A | 381 | JMJC domain-containing histone demethylation PROT; | 100.0 | |
| 3dxt_A | 354 | JMJC domain-containing histone demethylation PROT; | 100.0 | |
| 3opt_A | 373 | DNA damage-responsive transcriptional repressor R; | 100.0 | |
| 3avr_A | 531 | Lysine-specific demethylase 6A; cupin superfamily, | 100.0 | |
| 4ask_A | 510 | Lysine-specific demethylase 6B; oxidoreductase, KD | 100.0 | |
| 2xxz_A | 332 | Lysine-specific demethylase 6B; oxidoreductase, hi | 100.0 | |
| 2kk0_A | 145 | AT-rich interactive domain-containing protein 3A; | 99.88 | |
| 2li6_A | 116 | SWI/SNF chromatin-remodeling complex subunit SWI1; | 99.84 | |
| 2lm1_A | 107 | Lysine-specific demethylase LID; structural genomi | 99.84 | |
| 2cxy_A | 125 | BAF250B subunit, HBAF250B; DNA-binding domain, str | 99.83 | |
| 2eqy_A | 122 | RBP2 like, jumonji, at rich interactive domain 1B; | 99.79 | |
| 2jrz_A | 117 | Histone demethylase jarid1C; bright/ARID domain, h | 99.78 | |
| 2rq5_A | 121 | Protein jumonji; developmental protein, nucleus, r | 99.76 | |
| 1c20_A | 128 | DEAD ringer protein; DNA-binding domain, ARID, AT- | 99.76 | |
| 1ig6_A | 107 | MRF-2, modulator recognition factor 2; DNA binding | 99.72 | |
| 2jxj_A | 96 | Histone demethylase jarid1A; ARID domain, chromati | 99.7 | |
| 1kkx_A | 123 | Transcription regulatory protein ADR6; ARID, DNA-b | 99.69 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 99.43 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 99.42 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 99.38 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 99.32 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 99.29 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 99.26 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 99.25 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 99.22 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 99.19 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 99.18 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 99.18 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 99.18 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 99.16 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 99.16 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 99.15 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 99.14 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 99.13 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 99.11 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 99.1 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 99.09 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 99.04 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 99.04 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 99.03 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 99.03 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 99.02 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 99.01 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 98.99 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 98.97 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 98.96 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 98.95 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 98.93 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 98.93 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 98.91 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 98.91 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 98.91 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 98.9 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 98.9 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 98.86 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 98.86 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 98.83 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.8 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 98.78 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 98.77 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 98.76 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 98.76 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 98.74 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 98.72 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.7 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.69 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 98.65 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 98.64 | |
| 3kqi_A | 75 | GRC5, PHD finger protein 2; metal-binding, zinc-fi | 98.63 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 98.63 | |
| 1wep_A | 79 | PHF8; structural genomics, PHD domain, riken struc | 98.62 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 98.6 | |
| 2ysm_A | 111 | Myeloid/lymphoid or mixed-lineage leukemia protein | 98.56 | |
| 1we9_A | 64 | PHD finger family protein; structural genomics, PH | 98.55 | |
| 3v43_A | 112 | Histone acetyltransferase KAT6A; MOZ, PHD finger, | 98.46 | |
| 3o70_A | 68 | PHD finger protein 13; PHF13, structural genomics | 98.31 | |
| 1wee_A | 72 | PHD finger family protein; structural genomics, PH | 98.3 | |
| 3o7a_A | 52 | PHD finger protein 13 variant; PHF13, zinc finger, | 98.29 | |
| 2kwj_A | 114 | Zinc finger protein DPF3; acetyl-lysine, transcrip | 98.29 | |
| 2kgg_A | 52 | Histone demethylase jarid1A; PHD finger, histone m | 98.27 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 98.26 | |
| 1wem_A | 76 | Death associated transcription factor 1; structura | 98.21 | |
| 2lv9_A | 98 | Histone-lysine N-methyltransferase MLL5; zinc fing | 98.17 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 98.13 | |
| 2vpb_A | 65 | Hpygo1, pygopus homolog 1; gene regulation, WNT si | 98.06 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 98.05 | |
| 1wew_A | 78 | DNA-binding family protein; structural genomics, P | 98.03 | |
| 1wen_A | 71 | Inhibitor of growth family, member 4; ING1-like pr | 98.03 | |
| 1weu_A | 91 | Inhibitor of growth family, member 4; structural g | 98.02 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 97.98 | |
| 2jmi_A | 90 | Protein YNG1, ING1 homolog 1; PHD, histone, recogn | 97.98 | |
| 3c6w_A | 59 | P28ING5, inhibitor of growth protein 5; chromatin, | 97.98 | |
| 2g6q_A | 62 | Inhibitor of growth protein 2; protein-peptide com | 97.93 | |
| 2rsd_A | 68 | E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant | 97.9 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 97.86 | |
| 1x4i_A | 70 | Inhibitor of growth protein 3; structural genomics | 97.84 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 97.8 | |
| 2vnf_A | 60 | ING 4, P29ING4, inhibitor of growth protein 4; ace | 97.8 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 97.76 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 97.75 | |
| 2lbm_A | 142 | Transcriptional regulator ATRX; metal binding prot | 97.74 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 97.71 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 97.7 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 97.65 | |
| 2ypd_A | 392 | Probable JMJC domain-containing histone demethyla | 97.64 | |
| 3k3o_A | 371 | PHF8, PHD finger protein 8; histone demethylase, c | 97.61 | |
| 1mm2_A | 61 | MI2-beta; PHD, zinc finger, protein scaffold, DNA | 97.59 | |
| 4gne_A | 107 | Histone-lysine N-methyltransferase NSD3; zinc fing | 97.58 | |
| 3pua_A | 392 | GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe | 97.56 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 97.53 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 97.52 | |
| 3kv9_A | 397 | JMJC domain-containing histone demethylation prote | 97.49 | |
| 3rsn_A | 177 | SET1/ASH2 histone methyltransferase complex subun; | 97.43 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 97.42 | |
| 2yu1_A | 451 | JMJC domain-containing histone demethylation PROT; | 97.38 | |
| 3asl_A | 70 | E3 ubiquitin-protein ligase UHRF1; histone reader | 97.32 | |
| 2lri_C | 66 | Autoimmune regulator; Zn binding protein domain, a | 97.31 | |
| 3ql9_A | 129 | Transcriptional regulator ATRX; zinc finger, trans | 97.24 | |
| 3k2o_A | 336 | Bifunctional arginine demethylase and lysyl-hydro | 97.21 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 97.2 | |
| 2ku7_A | 140 | MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio | 97.19 | |
| 3shb_A | 77 | E3 ubiquitin-protein ligase UHRF1; unmodified hist | 97.06 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.0 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 96.84 | |
| 4gjz_A | 235 | Lysine-specific demethylase 8; JMJC, beta barrel, | 96.83 | |
| 3ask_A | 226 | E3 ubiquitin-protein ligase UHRF1; histone reader | 96.76 | |
| 1fp0_A | 88 | KAP-1 corepressor; PHD domain, C3HC4 type zinc bin | 96.32 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 96.04 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 95.78 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 95.68 | |
| 3d8c_A | 349 | Hypoxia-inducible factor 1 alpha inhibitor; FIH, H | 95.68 | |
| 3al5_A | 338 | HTYW5, JMJC domain-containing protein C2ORF60; tRN | 94.96 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 94.74 | |
| 3rsn_A | 177 | SET1/ASH2 histone methyltransferase complex subun; | 92.21 | |
| 4bbq_A | 117 | Lysine-specific demethylase 2A; oxidoreductase, ub | 91.78 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 87.08 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 86.02 | |
| 1vrb_A | 342 | Putative asparaginyl hydroxylase; 2636534, structu | 85.58 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 83.38 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 81.57 |
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-73 Score=675.14 Aligned_cols=235 Identities=32% Similarity=0.629 Sum_probs=205.5
Q ss_pred ccchHHHHHHHHHHhhhccCCCCcchhhhhhhhhhHhccCCCccccccccCCCCCCCCCCCCCcCCCCCCCccccccccc
Q 000215 308 RYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEY 387 (1849)
Q Consensus 308 ~yTLeeF~~~Ad~~k~~~f~~~~~~~~~~E~efW~~v~~~~~~v~V~yGaDi~~~~~gSgFp~~~~~~~~~~~~~~~~~y 387 (1849)
.||+.+|+++|+.++ +......+.++||++||++|.. ++|+||+|++++.|++|
T Consensus 113 ~~tl~~f~~~a~~~~--~~~p~~~~~~~lE~~fWr~v~~----~~~~YgaD~~gS~f~~~-------------------- 166 (381)
T 2ox0_A 113 AMTVREFRKIANSDK--YCTPRYSEFEELERKYWKNLTF----NPPIYGADVNGTLYEKH-------------------- 166 (381)
T ss_dssp CEEHHHHHHHHHSTT--TSCCCCSSHHHHHHHHHHHTTS----SCCEEEEEEECCCSCTT--------------------
T ss_pred ccCHHHHHHHhcccc--cCCCccCCHHHHHHHHHhhCCc----CCceeecCCCcccCCCC--------------------
Confidence 456666666666433 2222344678999999999984 57899999986555432
Q ss_pred CCCCccccCCCCCcchhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHH
Q 000215 388 CNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVM 467 (1849)
Q Consensus 388 ~~~~WNL~nlp~~~~slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~ 467 (1849)
.++|||||||.+.++||++++.+|+|||+||||+||+||+||||+|||+||||||+|+|+||+||+||++++++||++|
T Consensus 167 -~~~WNL~~Lp~ll~~ll~~~~~~I~GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~ 245 (381)
T 2ox0_A 167 -VDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLA 245 (381)
T ss_dssp -CCSSCTTCCCCGGGHHHHHHCCCCBTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHH
T ss_pred -CCCCchhhhhhHHHHHHHhcCCCCCCcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcccCChhhhhhhccccChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchhchhhh
Q 000215 468 RSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFG 547 (1849)
Q Consensus 468 ~~~~p~~~~~~pd~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~~~ 547 (1849)
++.+|+++.+|+++|+|++++++|+.|+++||||++++|+|||||||||||||+|||+||||+||||||+++|+++|..|
T Consensus 246 ~~~~P~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a 325 (381)
T 2ox0_A 246 KGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQA 325 (381)
T ss_dssp HHHSHHHHHHCTTGGGGSCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHC
T ss_pred HHhChhhhhcchHHhhccccccCHHHHHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhcCCCCCChHHHHHHHh
Q 000215 548 ADLYQQYHKAAVLSHEELLCVVA 570 (1849)
Q Consensus 548 ~~~y~~~~~~~vfs~~~Ll~~~A 570 (1849)
.+.+... ..-.++|+.++-++-
T Consensus 326 ~~c~c~~-~~v~i~~d~~~~~~~ 347 (381)
T 2ox0_A 326 VLCSCRK-DMVKISMDVFVRKFQ 347 (381)
T ss_dssp CCCCSST-TCCCCCCHHHHHHHC
T ss_pred hhccccC-CceeecHHHHHHHhC
Confidence 7654322 233456777765543
|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* | Back alignment and structure |
|---|
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* | Back alignment and structure |
|---|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A | Back alignment and structure |
|---|
| >2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A | Back alignment and structure |
|---|
| >2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A | Back alignment and structure |
|---|
| >1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A | Back alignment and structure |
|---|
| >2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* | Back alignment and structure |
|---|
| >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A | Back alignment and structure |
|---|
| >4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B | Back alignment and structure |
|---|
| >2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A | Back alignment and structure |
|---|
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
| >4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... | Back alignment and structure |
|---|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A | Back alignment and structure |
|---|
| >4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1849 | ||||
| d1c20a_ | 128 | a.4.3.1 (A:) DNA-binding domain from the dead ring | 1e-24 | |
| d1ryua_ | 120 | a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 | 5e-20 | |
| d1ig6a_ | 107 | a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo | 1e-16 | |
| d1kkxa_ | 102 | a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) { | 2e-15 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 1e-13 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 1e-05 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 7e-04 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 4e-13 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 1e-12 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 8e-08 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 6e-12 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 0.001 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 3e-11 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 6e-11 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 2e-10 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 4e-05 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 1e-10 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 6e-06 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 7e-05 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 1e-09 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 0.002 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 3e-09 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 2e-07 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 2e-06 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 3e-08 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 0.001 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 3e-06 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 1e-04 |
| >d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: ARID-like family: ARID domain domain: DNA-binding domain from the dead ringer protein species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 98.9 bits (246), Expect = 1e-24
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 80 TFPTKTQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAA 139
+F + + + QL + K F + F+++ GT +N+ LDL +L+N
Sbjct: 3 SFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKR-GTPINRLPIMAKSVLDLYELYNLV 61
Query: 140 KRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQLYYKHLYDYEKYYNKLN 194
GG V+ +K W E+ + + I+ A L Y K+LY YE L+
Sbjct: 62 IARGGLVDVINKKLWQEIIKGLHLPSSITS-AAFTLRTQYMKYLYPYECEKKNLS 115
|
| >d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
| >d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
| >d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 102 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1849 | |||
| d1c20a_ | 128 | DNA-binding domain from the dead ringer protein {F | 99.75 | |
| d1ryua_ | 120 | SWI-SNF complex protein p270, SMARCF1 {Human (Homo | 99.74 | |
| d1ig6a_ | 107 | MRF-2 DNA-binding domain {Human (Homo sapiens) [Ta | 99.68 | |
| d1kkxa_ | 102 | Transcription regulator Adr6 (Swi1) {Baker's yeast | 99.62 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 99.25 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 99.09 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 98.99 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.98 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.95 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 98.92 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 98.75 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 98.73 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.72 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.6 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 98.45 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.27 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.19 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.11 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 98.11 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 97.95 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 97.91 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 97.9 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 97.85 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.8 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 97.75 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 97.74 | |
| d1vrba1 | 319 | Putative asparaginyl hydroxylase YxbC {Bacillus su | 96.8 | |
| d1h2ka_ | 335 | Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum | 96.28 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 87.27 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 86.61 | |
| d1weqa_ | 85 | PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculu | 82.42 |
| >d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: ARID-like family: ARID domain domain: DNA-binding domain from the dead ringer protein species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=2.7e-19 Score=183.35 Aligned_cols=112 Identities=26% Similarity=0.398 Sum_probs=102.0
Q ss_pred cccccccccchhhhhhhccCChhhHHHHHHHHHHHhcCCcccccccccCeeechHHHHHHHhhcCChHhhhcccchHHHH
Q 000215 79 FTFPTKTQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVF 158 (1849)
Q Consensus 79 F~F~tR~Q~LneL~~~~r~~~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va 158 (1849)
..|+++.|.+.+|......++++.|+.+|.+||+. +|+++..+|+|+|++||||+||++|.++|||+.|+.+++|.+|+
T Consensus 2 ~~~~~~~~~~~~l~e~~~~~er~~F~~~L~~f~~~-rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va 80 (128)
T d1c20a_ 2 WSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQK-RGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEII 80 (128)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTT-TSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHH
T ss_pred ccHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHH-cCCccCcCCeECCeeccHHHHHHHHHHhcCHHHhcccccHHHHH
Confidence 46999999999999877766788999999999976 89999999999999999999999999999999999999999999
Q ss_pred hHhcCCCccchhhHHHHHHHHHHhhhcHHHHHhh
Q 000215 159 RFVRSNRKISDCARHVLCQLYYKHLYDYEKYYNK 192 (1849)
Q Consensus 159 ~~l~~~~~~~s~~~~~Lk~~Y~kyL~pYE~~~~~ 192 (1849)
+.||++...++ +++.|+++|.|||+|||.|.++
T Consensus 81 ~~lg~~~~~~~-~~~~L~~~Y~k~L~~fE~~~~~ 113 (128)
T d1c20a_ 81 KGLHLPSSITS-AAFTLRTQYMKYLYPYECEKKN 113 (128)
T ss_dssp HHTCCCSSCCS-HHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHhCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876654 5668999999999999998753
|
| >d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1weqa_ g.50.1.2 (A:) PHD finger protein 7 (NYD-SP6) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|