Citrus Sinensis ID: 000221
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1837 | ||||||
| 359473545 | 1788 | PREDICTED: uncharacterized protein LOC10 | 0.917 | 0.942 | 0.492 | 0.0 | |
| 356569203 | 1786 | PREDICTED: uncharacterized protein LOC10 | 0.925 | 0.952 | 0.465 | 0.0 | |
| 356538113 | 1734 | PREDICTED: uncharacterized protein LOC10 | 0.886 | 0.939 | 0.463 | 0.0 | |
| 449435448 | 1832 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.953 | 0.442 | 0.0 | |
| 449512985 | 1484 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.792 | 0.981 | 0.462 | 0.0 | |
| 306489519 | 1767 | TGN-localized SYP41-interacting protein | 0.725 | 0.754 | 0.429 | 0.0 | |
| 334182831 | 1732 | uncharacterized protein [Arabidopsis tha | 0.706 | 0.749 | 0.424 | 0.0 | |
| 334182829 | 1807 | uncharacterized protein [Arabidopsis tha | 0.724 | 0.736 | 0.419 | 0.0 | |
| 255547932 | 1987 | ATP binding protein, putative [Ricinus c | 0.534 | 0.494 | 0.508 | 0.0 | |
| 9743334 | 1864 | F21J9.12 [Arabidopsis thaliana] | 0.714 | 0.704 | 0.413 | 0.0 |
| >gi|359473545|ref|XP_002267770.2| PREDICTED: uncharacterized protein LOC100257864 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1571 bits (4069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1825 (49%), Positives = 1213/1825 (66%), Gaps = 139/1825 (7%)
Query: 32 SKDDLFLDASDDLD--DARNADNRESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVG 89
K+D+F+DA ++L D RN D SV +E ++ H+ +
Sbjct: 84 GKEDMFVDAPEELTAYDGRNVDGGRSV------------------QEYSDEEHIAQ---- 121
Query: 90 SGSNHELERLRNLLEKTVRERDSIEKDYKEERENFARELANLRHQLKVLT-------NKD 142
+ L L NL KTV E S+ ++Y+EERE +ELA+L HQLK LT D
Sbjct: 122 ---DGRLLELGNL-GKTVDETGSVPREYEEEREMLGKELASLHHQLKALTVQLQLPGGND 177
Query: 143 GELAEGFSEKEFGESDGKRQVGDAPLHELLSECSQFLRSALEERSKNESAIREINAVLYK 202
G L + E G + + V D PL E+++ECS F+R ALEER + E IRE++A+L
Sbjct: 178 GGLVDFLHTSERGGIEDNKPVFDTPLSEMINECSMFVRGALEERLQTEGTIRELHAILVM 237
Query: 203 KDREIEHLNAKVAEILVSHDVAAAYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVY 262
KD+EIE LN KV ++EK+Q++E +RM + L VV
Sbjct: 238 KDQEIEDLNRKV------------------------ELEKNQHIEGATNRMFASLGSVVD 273
Query: 263 QGELMDSSISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAA 322
Q EL D S+SGKI+HVE+ST LIEKY+Q L EI L Q L++ + RVQE T+F A
Sbjct: 274 QEELWDDSVSGKITHVEKSTTQLIEKYSQFLSEIDLLRQLLTETGSDIRVQEGSGTIFFA 333
Query: 323 ARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMK 382
R ELL LKR+E + VE L+HLE ENRKLV Q E D+ E ++ EL K K ELE EK K
Sbjct: 334 VRAELLELKRKEADFVEKLNHLEGENRKLVGQLENDKVTAEMLSTELGKTKMELEQEKNK 393
Query: 383 CTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEF 442
C KEKLSLAVTKGKALVQQRD+L+QSLADKT ELEKCL +LQ KSSAL+AAELSKEE
Sbjct: 394 CANAKEKLSLAVTKGKALVQQRDALRQSLADKTSELEKCLVDLQNKSSALEAAELSKEEL 453
Query: 443 IKTENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLDMVERIKWLVSERHELKGIS 502
K+E+L +SLQ+ L N ++EK EEVL+ EELQS D++E++ WL+ ER+ LK +S
Sbjct: 454 AKSESLASSLQQELSWKNAIVEKFEEVLSGTSRNEELQSTDILEKLGWLMDERNVLKTVS 513
Query: 503 LDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEI 562
L+F+KL+DA+SLID+PET S SDLES++ WL ESFYQA+DE N L D+++R +EAA+NE+
Sbjct: 514 LEFHKLRDALSLIDLPETISSSDLESQVRWLGESFYQARDEINKLQDEISRTREAAQNEV 573
Query: 563 DRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLLKESGTSMEDQ 622
D+L+ SL AE+QEKDY QKEL DL +E+I E+ +IS EK HMVR LL SG +M+++
Sbjct: 574 DQLTTSLLAEIQEKDYLQKELEDLTFSHEKITEREQQISSEKHHMVRALLDASGITMDNE 633
Query: 623 DVASQTSSDPTAIISKCIGKIREQTCASSDTSGADSEMLQTMQSLLYVSYQELILCQQIL 682
+ + SSD T +I +C+GKI+EQ+ S +++ AD EM + ++SLLYV QEL LC++IL
Sbjct: 634 EGIHEPSSDVTMLIDRCLGKIKEQSEISVESARADEEMFERIRSLLYVRDQELTLCKEIL 693
Query: 683 EEDALVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGK 742
EE+ +RL++++L++KLR+ S+E ALK EK S QKDL+RSEEK ALLREKLS+AVKKGK
Sbjct: 694 EEEMPMRLEVSNLTDKLRMVSQELVALKAEKSSLQKDLDRSEEKLALLREKLSLAVKKGK 753
Query: 743 GLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIA 802
GL Q+RENLK LDEKN EIEKLKL LQ+QES + R QI++LS D++ I K+EAD++A
Sbjct: 754 GLVQERENLKQLLDEKNKEIEKLKLELQQQESAFGDYRGQIDKLSADVERIPKLEADVVA 813
Query: 803 MKDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQ 862
+KD+R+Q E FL+ESNN+LQ+V+E++D I++P VF+EP+ KV W+A+Y +EC KT
Sbjct: 814 IKDQRDQLEQFLVESNNILQRVIESIDGIVVPGGLVFEEPVAKVKWLAAYFSECEVAKTH 873
Query: 863 LEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEE 922
EQEL V++E S L+S+LAE +T+KS EDAL VAE+ I++LA++K+++EVGK NVE+E
Sbjct: 874 AEQELEKVREETSTLSSKLAEAYTTIKSQEDALLVAEENISRLAEDKKEIEVGKTNVEQE 933
Query: 923 LEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQV 982
L+KA+EEA Q SKFAE C++ SLED +++A+ N+S ++ EKE+AQA+ AAA ELE+V
Sbjct: 934 LQKAVEEAAFQASKFAEVCSAHTSLEDALAIAEKNLSAVMNEKEDAQATRAAAETELEKV 993
Query: 983 REEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREE 1042
++E A Q++++ EAY TIKS+E A L + AQ A V EL +V+EE
Sbjct: 994 KQEVAFQSNRVEEAYATIKSIE-GALAHAEANAALLAEEMNAAQVDRANLVDELRKVKEE 1052
Query: 1043 FVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQ 1102
SQ +L + YTT+KSLE LS+ E ++A L + GK +E E +L +
Sbjct: 1053 AASQAIELADVYTTVKSLEGTLSKAENSIAELVD-------GKKVVEQENLVLNSRLNAC 1105
Query: 1103 AVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSL 1162
+LA H +++S L ND+
Sbjct: 1106 MEELAGTHGSLESRSVELFGHLNDL----------------------------------- 1130
Query: 1163 ESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGS--- 1219
QM +KDE LLS++K FE+K E L++M+ ++++IR ++ K S
Sbjct: 1131 --------------QMLLKDETLLSSLKQTFEKKFESLKDMDSVLKNIRELLIEKVSEQL 1176
Query: 1220 ---AVTEGNSDVTKSFMDDID---NIEMYDNEVTVLDADDITSCFRKTAEGFQMRTKILT 1273
E +S +K F D +D N+ M ++E D +DI+S FRKT + F R IL
Sbjct: 1177 GNNPFVEEDSSASKRFSDGLDGIVNVGMANDEANPADGNDISSYFRKTVDAFHSRNTILA 1236
Query: 1274 DTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQ 1333
D E FS S+D FIA LL+KLQ TRDEV+ + ++SL+ K+KN+E KQ E + ML+
Sbjct: 1237 DKIEGFSTSMDGFIAVLLQKLQATRDEVIVVLDHVESLKQKMKNMEIQKQAQENTVTMLE 1296
Query: 1334 NDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSL 1393
ND +LLSAC DA +ELQ E +NNL +L+SVPELE+ N +SQ + + D +HQ+ +
Sbjct: 1297 NDIGILLSACTDANQELQLEFENNLPKLSSVPELESSN--WSQL-TFMGERDAAEHQQRI 1353
Query: 1394 HGNRYHEAAENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDL 1453
++Y + AE L + RK Q L ++FE V+A+TI+DLQ +L + T EK +ERD+
Sbjct: 1354 DSSKYAKTAEQLSVATRKVQTLIQMFENARNVSATTIKDLQNELDEMRTTSEKAIEERDI 1413
Query: 1454 HQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDRLSRKEQEAEGL 1513
+Q +VSKLE+D +AL++ C +++L++ED + EEKLK EA+ S +++ KE+E EG
Sbjct: 1414 NQKRVSKLEADAEALQNQCNDMKLRLEDYQEIEEKLKAREAEFSSFSNQVLMKEREVEGS 1473
Query: 1514 FLSPLQIRKLVDKISGIEIPYAESAGDE-EPESSAIVKKLFSIINSATKLPHQIDLLEHG 1572
LS Q++ L DKI I+IP+AES +E EP ++ VKKLF +I+ T+L HQ++LL H
Sbjct: 1474 LLSASQVKALFDKIDEIKIPFAESEAEELEPPNAVYVKKLFHVIDCVTELQHQMNLLSHE 1533
Query: 1573 KQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLESNEFVV 1632
K+ELQS L+TQ E+EHL+ +K D EK+K + E LEKI+ L N+ V
Sbjct: 1534 KEELQSTLATQVFEMEHLRN-------DKQDSEKLKNDLYELELSLEKIIQKLGGNDLVG 1586
Query: 1633 NQKSSGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESL 1692
++KS+G LL VLEK M + ++ENSKSK QELG KLL QK VD+L+TKV LLE+S+
Sbjct: 1587 DKKSAGVMELLTVLEKLAMDIILESENSKSKAQELGAKLLGGQKVVDELSTKVKLLEDSI 1646
Query: 1693 HGRRDQPEIVQERSIFEASSLPTGSEISEVEDVMQGTLGQKTISPVPSAAHTRTMRKGST 1752
H R PE VQER IFEA S+P+GSEISE+EDV G LG T+SPVPSAAH RT+RKGST
Sbjct: 1647 HARASPPEAVQERGIFEAPSVPSGSEISEIEDV--GPLGTNTVSPVPSAAHVRTLRKGST 1704
Query: 1753 DHLTINIDSESARLINSEETDEDKGHVFKSLNTLGLIPRQGKMVADRIDGIWVSGGRLLM 1812
DHL +NIDSES LI EETDEDKGHVFKSLNT G IP+QGKM+ADRIDGIWVSGGR+LM
Sbjct: 1705 DHLALNIDSESDHLIK-EETDEDKGHVFKSLNTSGFIPKQGKMIADRIDGIWVSGGRILM 1763
Query: 1813 SRPGTRLGLIAYSLLLHIWLLGTIL 1837
SRP RLGLIAY L LHIWLLGTIL
Sbjct: 1764 SRPRARLGLIAYWLFLHIWLLGTIL 1788
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569203|ref|XP_003552794.1| PREDICTED: uncharacterized protein LOC100800411 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356538113|ref|XP_003537549.1| PREDICTED: uncharacterized protein LOC100799016 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449435448|ref|XP_004135507.1| PREDICTED: uncharacterized protein LOC101218359 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449512985|ref|XP_004164197.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224868, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|306489519|gb|ADM94222.1| TGN-localized SYP41-interacting protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182831|ref|NP_001185085.1| uncharacterized protein [Arabidopsis thaliana] gi|332192412|gb|AEE30533.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182829|ref|NP_173855.5| uncharacterized protein [Arabidopsis thaliana] gi|332192411|gb|AEE30532.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255547932|ref|XP_002515023.1| ATP binding protein, putative [Ricinus communis] gi|223546074|gb|EEF47577.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|9743334|gb|AAF97958.1|AC000103_8 F21J9.12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1837 | ||||||
| RGD|1591925 | 2259 | Golga4 "golgin A4" [Rattus nor | 0.880 | 0.716 | 0.207 | 7.8e-30 | |
| UNIPROTKB|Q5U4E6 | 2259 | Golga4 "Golgin subfamily A mem | 0.880 | 0.716 | 0.207 | 7.8e-30 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.817 | 0.698 | 0.201 | 8.3e-30 | |
| MGI|MGI:1098230 | 2474 | Cenpe "centromere protein E" [ | 0.715 | 0.531 | 0.217 | 3.6e-29 | |
| MGI|MGI:1859646 | 2238 | Golga4 "golgi autoantigen, gol | 0.827 | 0.679 | 0.195 | 8e-29 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.672 | 0.828 | 0.207 | 9.5e-29 | |
| ZFIN|ZDB-GENE-050208-275 | 2037 | golga4 "golgin A4" [Danio reri | 0.838 | 0.756 | 0.194 | 2.2e-27 | |
| UNIPROTKB|E1C1F2 | 1980 | TRIP11 "Uncharacterized protei | 0.826 | 0.767 | 0.210 | 2.7e-27 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.722 | 0.619 | 0.202 | 4.9e-27 | |
| UNIPROTKB|F1RRC2 | 2249 | GOLGA4 "Uncharacterized protei | 0.697 | 0.569 | 0.207 | 5e-27 |
| RGD|1591925 Golga4 "golgin A4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Score = 397 (144.8 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
Identities = 374/1802 (20%), Positives = 745/1802 (41%)
Query: 52 NRESVASNEAEPSYSEENIVVSLKENQNQNHLVETDVGSGSNHXXXXXXXXXXKTVRE-- 109
NRE +A AEP++ E + +L ++ +T SG ++
Sbjct: 52 NRELLAGMVAEPAFLSEYTIFALDPSKQPK--TQTGSVSGDTQTFAQKLQLRVPSMESLF 109
Query: 110 RDSIEKD-YKEERENFARELANLRHQLKVLTNKDGELA--EGFSEKEFGESDGKRQVGDA 166
R I++ ++ +E+ R + R L + + D +A + S+ E D
Sbjct: 110 RSPIKESLFRSSKESLVR--TSSRESLNQV-DLDCAVATFDPPSDMESEAEDAPWSSDSL 166
Query: 167 PLHELLSECSQFLRSALEERSKNESAI-------RE---INAVLYK-KDREIEHLNAKVA 215
+LL + RS R K + RE + +L + +D+ + ++ ++
Sbjct: 167 SREQLLQRLRRMERSLSSYRGKYSELVTAFQTLQREKKKLQGILSQSQDKSLRRIS-ELR 225
Query: 216 EILVSHDVAAAYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGELMDSSISGKI 275
E L A +L E EKDQY+ V+ ++ S L + G M + +
Sbjct: 226 EELQMDQQAKRHLQEEFDACVE---EKDQYISVLQTQV-SLLKQRLQNGP-MSVDVPKPL 280
Query: 276 SHVE--QSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLN--LK 331
VE + +EK + L E +L + L + V E +A E+L +K
Sbjct: 281 PPVELQAEAHSDMEKLEEKLEE--KLEEKLE--EKLEGVGEAVGGGTSAKTLEMLQQRVK 336
Query: 332 RRE---EESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKC-TGTK 387
R+E + E + + + L+ + E +E +E EL KMK EK K T +
Sbjct: 337 RQENLLQRCKETIGSHKEQCALLLSEKEALQEQLEERLQELEKMKELHMAEKTKLITQLR 396
Query: 388 EKLSLAVT----KGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFI 443
+ +L KG + + + + ++L K E+ + + +Q ++ Q EL +E+
Sbjct: 397 DAKNLIEQLEQDKGMVITEAKRQMLETLELKDDEIAQLRSHIQRMTT--QGEEL-REQKE 453
Query: 444 KTENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLDMVERIKWLVSERHELKGISL 503
K+E A+ +E L+++ +K+E+ ++ + + Q + VER E L+ +
Sbjct: 454 KSER--AAFEE-LEKALSTAQKTEDAQRRMKVEMDEQ-IKAVER----AGEEERLR-LQH 504
Query: 504 DFYKLK-DAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNR-MKEAARNE 561
+ +++ +AVS+ + +DL+ A E + E + L+ R ++E R
Sbjct: 505 ELSRVRQEAVSMAK-KNSEQRADLQKLHA---EQLASKEQELSQKLESRERELQEQMRMA 560
Query: 562 IDRLSASLSAELQEKDYNQK-ELNDL-LCKYEEIVEKANKIS-LEKDHMV-RVLLKESGT 617
+++ + QEK+ + L +L L K + E NK+ L ++ V R ++E T
Sbjct: 561 LEKSRSEYLKLTQEKEQQESLALEELELQKKAILTESENKLQGLRQEAEVHRTRIRELET 620
Query: 618 SMEDQDVASQTSSDPTAI-ISKCIGKIREQTCASSDTSGADSEMLQTMQSLLYVSYQELI 676
S+E S+T S+ A+ + K + + A ++ + E LQ Q L+ +
Sbjct: 621 SLEKSLQESRTQSERLAVHLEAEKSKHKTELTALAEKHRTELEGLQQQQHSLWTERLQN- 679
Query: 677 LCQQILEEDALVRLQLNDLSNKLRVASEEFGALKEE-KESQQKDLERSEEKSALLRE--- 732
L QQ + A+ L+ K + E+ + ++ +K LE+ ++K L
Sbjct: 680 LSQQ--HQAAVEELREKHQQEKDALLKEKESLFQAHIQDMNEKTLEKLDKKQMELESVSS 737
Query: 733 KLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDC 792
+LS A+K L ++ L+ D+ +E LQEQ + +++ +S +
Sbjct: 738 ELSEALKARDQLAEELSVLRGDADQMKQALEA---ELQEQRR---HHQREVDSISGQQEI 791
Query: 793 I-RKMEADLIAMKDERNQFEHFLLESNNMLQK---VLETVDRIILPVNSVFKEPLEKVNW 848
I R+ E A+KDE +Q L E + LQ+ + ++ + ++ L K++
Sbjct: 792 IVRRTEK---ALKDEISQLGGLLKEKDEHLQERQAQVHNLEACLQKSAEELQQALAKLDL 848
Query: 849 IASYINECHDTKTQLEQELGNVKQXXXXXXXXXXXTQSTMKSLEDALSVAEDKITQLADE 908
+ + + H E++L ++Q + +E + + +L +
Sbjct: 849 LQAQQSTTHAQTGAYEEQLAQMQQKVSDLETEKNLLTKQVVEVE---TQKKRVCVELDAQ 905
Query: 909 KRQVEVGKKNVXXXXXXXXXXAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEA 968
+ QV+ ++ A +Q S+ + ++ + ++ +N +I + E
Sbjct: 906 RAQVQQLERQRSELEDKVKSLAQLQESQLKNSHVEKEQAQQILTEKEN----VILQMREE 961
Query: 969 QASGAAAVVELEQVREEFASQTSKLT---EAYKT-IKSLEDSLAQVEANVAMLTEQNK-- 1022
QA E+E ++++ S+ ++ E Y+T K+ E + +++ + E K
Sbjct: 962 QAK------EIEILKQKLFSKEESISILHEEYETKFKNQEKRMEKIKQKAKEMQEMKKKL 1015
Query: 1023 --EEAQASGAA--AVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQN 1078
+EA+ VLEL Q ++F ++ ++ +A + + D +S++E N E
Sbjct: 1016 LDQEAKLKKELENTVLELSQKEKQFNAKILEMAQANSA--GISDTVSRLEENQRQQIE-- 1071
Query: 1079 NVLQVGKTTLENELQMLKDEAGSQAVKLADAHTT-IKSMEDALLKAKNDISVLEGEKRIS 1137
++ + L++ ++ + + QA +L D H I+ E L + K + ++ EK
Sbjct: 1072 SLTGAHQRELDDLIESWEKKLSQQAEELRDQHEKLIEEKEQELGELKQKVLTVQSEKEEV 1131
Query: 1138 DQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLND--LQMHMKDERLLSAVKSCFER 1195
QEV+ L + LAG G LE +S ++ L+D Q+ + E+L +
Sbjct: 1132 TQEVARLTEAVTGQDVTLAGLQGQLEQKSAAVLA-LSDSHAQLQSQVEKLEVDLGCALNE 1190
Query: 1196 KI---EGLQNMELIVE--DIRIG-VVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVL 1249
K+ E L ++++ E +R+ + GK A E KS + ++ + D + +
Sbjct: 1191 KLSLQEELAELKMLAEREKLRVSELTGKVQAAEE-ELQSCKS-LHEVSRKSLEDKSLNLR 1248
Query: 1250 DA-DDITSCFRKTAEGFQMRTKILTD--TFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQ 1306
+++ S + E RTK L + T E S D+ A+L +L + + +
Sbjct: 1249 TLLEELASQLDRHCE----RTKALLEAKTNELVCTSRDK-ADAILARLSRCQRHTATVGE 1303
Query: 1307 CMDSLRGKVKNLEGCKQEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNS-VP 1365
+ G+V LE + E L+N + E + ++K ++ +
Sbjct: 1304 ALLRRMGQVSELEAQLTQLTEEQCTLKNS----FQQVTNQLEEKENQIKTMKADMEGLIA 1359
Query: 1366 ELENLNRGFSQPESKVDGDDT--TDHQKSLHGNRYHEAAENLLFSARKAQPLAKLFEMTS 1423
E E L + Q + ++ T +K L N S +K++ +A L + S
Sbjct: 1360 EKEALQQEGGQQQQVASEKESCITQLKKELSENINAVTLLREELSEKKSE-IASLSKQLS 1418
Query: 1424 TVAASTIQDLQKKLQ-DTTTAYEKVKDERDLH-QNKVSKLESDVDAL-EHSCKELRXXXX 1480
V+A + + + +A K +E++L Q ++ +L S VDAL + L
Sbjct: 1419 DVSAQLENSISPSDKAEAISALSKQHEEQELQLQAQLRELSSKVDALSKEKMSALEQVDH 1478
Query: 1481 XXXXXXXXXXXXXXXI----SLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAE 1536
S + D ++ + +A+ QIR L + + +
Sbjct: 1479 WSNKFSEWKKKAQPRFAQYQSTIKDLQTQLDLKAKEAGEKDEQIRLLKEDLDQQNERFES 1538
Query: 1537 SAGDEEPESSAIVKKLFSIINSATKLPHQIDLLEHGKQELQSILS-----TQTAEIEHLK 1591
G+ E + + +L + +L D + K+E++S+ +Q + EH
Sbjct: 1539 LKGEMEKKECDLETELKTRTARVVELE---DCITQRKKEVESLNEALRNCSQQRDTEH-S 1594
Query: 1592 GEVETHLRNKPDLEKMKIEFAEFTFGLEKIVNMLESNEFVVN--QKSSGSKGLLAVLEKQ 1649
G V+T R LE++ G EK + E+ E V+ ++ S + L V+ K+
Sbjct: 1595 GLVQTLQR----LEEL---------GQEKDNKVREAEETVLGLRERVSSLEAELRVVRKE 1641
Query: 1650 IMTLHSDAENSKSKVQELGNKL-LESQKEVDDLTTKVDLLEESLHGRRDQPEIVQERSIF 1708
+ ++S ++ +++ L +KL LES +V+ L K E+ L R Q E +
Sbjct: 1642 LDDVNSSVKSRDGELKALEDKLELESAAKVE-LKRKA---EQKLAAIRKQLLSQMEAKVQ 1697
Query: 1709 EASSLPTGSEISEVEDVMQGTLGQKTI-----SPVPSAAHT-RTMRKGSTDHLTINIDSE 1762
+ + T S++SE+ +QG Q I + S+ H R + GS ++ + + E
Sbjct: 1698 QCAK-DTESQLSELRAKLQGREKQIHILEGKLKNLASSPHPERAVVSGSMGNVAASPEQE 1756
Query: 1763 SA 1764
+A
Sbjct: 1757 AA 1758
|
|
| UNIPROTKB|Q5U4E6 Golga4 "Golgin subfamily A member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1098230 Cenpe "centromere protein E" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1859646 Golga4 "golgi autoantigen, golgin subfamily a, 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050208-275 golga4 "golgin A4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C1F2 TRIP11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RRC2 GOLGA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1837 | |||
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 7e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 2e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| COG1511 | 780 | COG1511, COG1511, Predicted membrane protein [Func | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.003 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-12
Identities = 122/707 (17%), Positives = 267/707 (37%), Gaps = 54/707 (7%)
Query: 534 KESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYN-QKELNDLLCKYEE 592
E + +E L + E E+ L L EL+ + ++E+ +L +
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYA 292
Query: 593 IVEKANKISLEKDHMVRVL--LKESGTSMEDQDVASQTSSDPTAIISKCIGKIREQTCAS 650
+ + +++ +K + L L+ +E Q ++ D A + + E+
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 651 SDTSGADSEMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSNKLRVASEEFGALK 710
+ + L+ +++ L L ++ LE +R ++ L ++ + E L+
Sbjct: 353 LE---SLEAELEELEAELEELESRLEELEEQLET---LRSKVAQLELQIASLNNEIERLE 406
Query: 711 EEKESQQKDLER-SEEKSALLREKLSMAVKKGKG----LFQDRENLKLQLDEKNSEIEKL 765
E + ER +E LL++ +K+ + L ++ E L+ +L+ +E+L
Sbjct: 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
Query: 766 KLNLQEQESTISECRDQINRLSNDLDCIRKMEADL-------IAMKDERNQFEHF----- 813
+ L+E E + ++ +L LD + +++ +L A+ ++
Sbjct: 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS 526
Query: 814 -LLESNNMLQKVLETV-------------DRIILPVNSVFKEPLEKVNWIA-SYINECHD 858
L+ + + +E + + + + L +V ++ I
Sbjct: 527 ELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
Query: 859 TKTQLE--QELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGK 916
E + + A L + + + L + V +D + + +++ G
Sbjct: 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRPGY 645
Query: 917 KNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAV 976
+ V + + + + T A+ +S E+ + + L + E + + A
Sbjct: 646 RIVTLDGDL-VRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
Query: 977 VELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLEL 1036
ELE++ EE +L E + I +L LA++EA V L E+ + ++ EL
Sbjct: 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK--------EL 756
Query: 1037 EQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLK 1096
++ E +L EA + E + ++EA + L E+ L+ L EL +L
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
Query: 1097 DEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELA 1156
+EA + +L I + E L + I L + E+ L + EL
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
Query: 1157 GTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNM 1203
+ S L ++L+ ++ R L + +S R++E L+
Sbjct: 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1837 | |||
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 100.0 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.97 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.96 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.96 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.94 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.94 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.91 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 99.85 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.84 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.84 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.84 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.77 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.71 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 99.68 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.67 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.66 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 99.63 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.63 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.57 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.55 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.55 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 99.53 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.44 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 99.38 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.37 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 99.33 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 99.29 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 99.09 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 99.05 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 99.0 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.93 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.9 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.86 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.74 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.65 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.65 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.63 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.55 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.54 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.53 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.51 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 98.49 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.47 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.39 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.35 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 98.34 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.31 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.3 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.23 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.14 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 98.13 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 98.09 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 98.09 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.05 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.95 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.92 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.88 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.87 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.79 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.79 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.77 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.65 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.57 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.55 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.51 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 97.44 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 97.38 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.36 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.36 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 97.3 | |
| KOG4677 | 554 | consensus Golgi integral membrane protein [Intrace | 97.24 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 97.2 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.17 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.14 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 97.04 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 97.02 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.96 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.94 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.93 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 96.82 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 96.79 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 96.77 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.75 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.72 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.69 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 96.65 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 96.6 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 96.35 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.31 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.25 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.16 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 96.04 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.92 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.89 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.81 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 95.6 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 95.54 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 95.54 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 95.52 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 95.29 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 95.19 | |
| PRK09039 | 343 | hypothetical protein; Validated | 95.09 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 94.92 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.83 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.74 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.27 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 94.2 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 94.08 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.05 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 94.04 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 94.02 | |
| PF13514 | 1111 | AAA_27: AAA domain | 93.91 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 93.85 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 93.34 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 92.3 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 92.02 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 91.82 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 91.55 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 91.47 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 91.17 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 91.13 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 90.76 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 90.47 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 89.89 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 89.23 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 89.22 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 88.84 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 87.8 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 87.75 | |
| PF08172 | 248 | CASP_C: CASP C terminal; InterPro: IPR012955 This | 87.73 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 86.78 | |
| PF13514 | 1111 | AAA_27: AAA domain | 86.65 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 86.39 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 85.33 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 85.15 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 85.02 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 84.26 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 84.2 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 84.02 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 83.82 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 83.51 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 83.43 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 83.3 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 83.01 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 82.83 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 82.78 | |
| KOG4809 | 654 | consensus Rab6 GTPase-interacting protein involved | 82.77 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 82.23 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 81.8 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 81.49 | |
| PF05384 | 159 | DegS: Sensor protein DegS; InterPro: IPR008595 Thi | 81.43 | |
| KOG0249 | 916 | consensus LAR-interacting protein and related prot | 81.03 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 80.72 |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-24 Score=287.47 Aligned_cols=505 Identities=18% Similarity=0.205 Sum_probs=379.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 931 HIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQV 1010 (1837)
Q Consensus 931 ~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~l 1010 (1837)
..+...+.+.......+......++.++..+..++.........++...+.++..+.+++.++.+....+.++-.....+
T Consensus 1192 ~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1192 AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555556666666666666666677666666666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000221 1011 EANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLEN 1090 (1837)
Q Consensus 1011 e~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~ 1090 (1837)
..++..+...+ ......+..+......+...+..++.++..-......+...+..++.++..+..+++.....+..+..
T Consensus 1272 ~~E~~~l~~~l-ee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r 1350 (1930)
T KOG0161|consen 1272 QNENEELSRQL-EEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELER 1350 (1930)
T ss_pred hhhHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665544 11122333333333444444444555554444555556666777888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000221 1091 ELQMLKDEAGSQAVKLADAHT-TIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVEL 1169 (1837)
Q Consensus 1091 eL~~l~~El~~~~~kl~e~~~-~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL 1169 (1837)
.+.....++..|..+++.... ....+++....+..+++.++..+. ........+++.+.+|
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e------------------~~~~~~~~Lek~k~~l 1412 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE------------------AANAKNASLEKAKNRL 1412 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 999999999998888875444 366777777777766666655554 4445566777788888
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhcccCCcccccCCCCcccccccccccccccccccccc
Q 000221 1170 IGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVL 1249 (1837)
Q Consensus 1170 ~~~ledlq~~~~d~~~~~~~~~~~~~k~~~l~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~el~~~~~~~~ 1249 (1837)
+++++| ...|.++.....+.++++++.|+.. +++|+.... .... +++.++.+.+
T Consensus 1413 ~~el~d---~~~d~~~~~~~~~~le~k~k~f~k~---l~e~k~~~e---~l~~-----------------Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1413 QQELED---LQLDLERSRAAVAALEKKQKRFEKL---LAEWKKKLE---KLQA-----------------ELDAAQRELR 1466 (1930)
T ss_pred HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHH-----------------HHHHHHHHHH
Confidence 888888 5667788888999999999999988 799997654 1110 3444444444
Q ss_pred chhh-------hhHHHHHHHHHHHHhhhhHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhH
Q 000221 1250 DADD-------ITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCK 1322 (1837)
Q Consensus 1250 ~~~~-------~~~~~~~~~e~~~~~~~~L~~~~~~~~~~idq~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~~l~~~~ 1322 (1837)
..++ .++++.+.++.+.++++.++.++.++..++++....+|. ++...+.+...+..|+..|..+.+.+
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~e----lek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHE----LEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333 466777799999999999999999999998877776666 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhhcccCCCCCCCccCCCCccccccccccchHHHHH
Q 000221 1323 QEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAA 1402 (1837)
Q Consensus 1323 ~~~ee~l~~le~~l~~l~~~~~~~~~~le~el~~~l~~l~~~~eLe~~~~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~ 1402 (1837)
+..+....+++.++..+..+ +++.+.. + ..++...+
T Consensus 1543 e~eE~~~lr~~~~~~~~r~e-------~er~l~e----------------------------------k---~Ee~E~~r 1578 (1930)
T KOG0161|consen 1543 EAEEDKKLRLQLELQQLRSE-------IERRLQE----------------------------------K---DEEIEELR 1578 (1930)
T ss_pred hhhhhHHHHHHHHHHHHHHH-------HHHHHHh----------------------------------h---hHHHHHHH
Confidence 99999999988888888777 5443322 1 11245567
Q ss_pred HHHHHhhhhhhHHHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-
Q 000221 1403 ENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVED- 1481 (1837)
Q Consensus 1403 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~- 1481 (1837)
+.+....+.+++......+.+..+.+..++|+.++++++.+++++......+++.++.++..+++++..+++.....++
T Consensus 1579 k~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~ 1658 (1930)
T KOG0161|consen 1579 KNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREEL 1658 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888887777888899999999999999999999999999999999999999999999999999999988874
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHhhhccc
Q 000221 1482 ---LEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIE 1531 (1837)
Q Consensus 1482 ---~~~leekl~~~~~ei~~l~~~l~~~e~e~e~~~~~~~eleel~~ki~~l~ 1531 (1837)
+...+.++....+++..++..+..+.+ .......++.++.+.++.+.
T Consensus 1659 ~~q~~~aerr~~~l~~E~eeL~~~l~~~~R---arr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1659 LEQLAEAERRLAALQAELEELREKLEALER---ARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHh
Confidence 456678999999999999999998888 35566677888888887744
|
|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins | Back alignment and domain information |
|---|
| >KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.9 bits (235), Expect = 2e-19
Identities = 114/727 (15%), Positives = 217/727 (29%), Gaps = 224/727 (30%)
Query: 78 QNQNHLVETDVGSGSNHELERLRNLLEKTVRERD--SIEKDY------KEERENFARE-- 127
+ +H ++ + G + L + V D ++ D KEE ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKD 59
Query: 128 -LANLRHQLKVLTNKDGELAEGFSEKEFGESDGKRQVGDAPLHELLSECSQFLRSALEER 186
++ L +K E+ + F E E+L +FL S ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVE------------------EVLRINYKFLMSPIKTE 101
Query: 187 SKNESAIREINAVLYKKDREIEHLNAKVAEILVSHDV----AAAYLNSAAGITSEAQIEK 242
+ S + +Y + R+ + ++ ++V L A ++
Sbjct: 102 QRQPSMMTR----MYIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQAL-----LELRP 149
Query: 243 DQYVEVVADRML----SYLAMVVYQGELMDSSISGKISHVEQSTYMLIEKYNQMLYEIY- 297
+ V + +L +++A+ V + +M ++I+
Sbjct: 150 AKNVLIDG--VLGSGKTWVALDVCL----SYKVQ-----------------CKMDFKIFW 186
Query: 298 -QLGQCLSKPDPERRVQE---QFETVFAAARDELLNLKRREEESVENLSHL---ENENRK 350
L C S +Q+ Q + + + D N+K R L L +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 351 L-----VEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRD 405
L V ++ + A N + C K L+ R
Sbjct: 247 LLVLLNV----QNAKAWNAFN--------------LSC--------------KILLTTRF 274
Query: 406 SLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIK-TENLVASLQETLQQSNLMLE 464
+ D L S L E K +K + L + +N
Sbjct: 275 K---QVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPR-- 328
Query: 465 KSEEVLAQIDIPEELQSLDMVERIK-WLVSERHELKGI---SLD----------FYKL-- 508
L+ I E ++ D + W +L I SL+ F +L
Sbjct: 329 ----RLSI--IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 509 --KDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLS 566
A +P L S + W K + V++++L++ + +
Sbjct: 381 FPPSA----HIPT-----ILLSLI-WFDVI----KSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 567 A--SLSAELQEKDYNQKELND-LLCKYEEI--VEKANKISLEKD---------HMVRVLL 612
+ S+ EL+ K N+ L+ ++ Y + + I D H+ +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 613 KESGTSMED--QDVASQTSSDPTAIISKCIGKIREQTCASSDTSGADSEMLQTMQSL-LY 669
E T D + + KIR + A A +L T+Q L Y
Sbjct: 487 PERMTLFRMVFLDF---------RFLEQ---KIRHDSTA----WNASGSILNTLQQLKFY 530
Query: 670 VSYQELILCQQILEEDALVRLQLNDL----------------SNKLRVA-SEEFGALKEE 712
Y I + D +N + ++ LR+A E A+ EE
Sbjct: 531 KPY--------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 713 KESQ-QK 718
Q Q+
Sbjct: 583 AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00