Citrus Sinensis ID: 000240

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800---

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

ccEEcccccccccEEEEEEccccccccccccccccHHHHHHHHccccccEEEEEEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccEEEEEccEEEEEEEEEEcccEEEEEcccccEEEEEccccEEEEEccccEEEEEEcccEEEEEEEccccccccEEEEEEEcccEEEEEEEEccccccccccEEEEccccEEEEEEcEEEEEEEEEEcccccccEEEEcccccEEEEcccccEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcEEccEEEEEEEEEEEEEEEEEEEEccccccccEEEccccccccEEEEEEEEcccccccccEEEEEcccEEEEEccccEEEEccccEEEEEEEEcccccEEEEEEEEEEcccEEEEEccEEEEEEcccEEEEEEEEEEccccEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEccccEEEccccccccccEEEEccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEccEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEcccccccccccHHHHcccccccccccEEEEEEEEEcccEEEEEEEEEcccccEEEcccccEEEEEEEcccccEEEcccccccccccccEEEEEEEccccEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEEEEEEEcccEEEEEEccccEEEEEEEEcEEEEEEEEcccccEEEEEcccccEEEEEEEEEcccEEEEEEEEEEEccccccEEEEEEEEEEEEEEEEEccEEEEEccEEEEEEEEEEEccccEEEccccEEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccEEEccEEEEccccEEEEEEEEcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEcccEEEEEccccEEEEccEEEEEEEcccccccccccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEccccccccccEEEEEEEEEccEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccccccccEEEccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEccEEEccccEEEEccccEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEcccEEEEEEEcccEEEEEEEEEccccccEEEEccEEEEEEEEccccEEEEEEEEcccEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEcccEEEEEcEEEEEEEEEccccccEEEEccccEEEEEccccEEEEEEEcEEEEEEEccccEEEEEEEEEEEEEEEEcccccEEEccccccccEEEEEEEcccccccccccccEEEEEEEccccEEEEcccEEcccccEEEEEcccccccEEcccccccccccEEEEEEEEEEEcccEEEcccEEEEEEEEEEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccEEEEEccccccccccEEEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEccccccccccEEEEEcccccccccccccccHHHHHHHHHccccccEEEEEEEcccEEEEEEEEccccHccccHHEEEEEHHHEEEcccccEEEEcccEEEEEEEEEEcccEEEEEcccccEEEEEccccEEEEcccccEEEEEEcccEEEEEEEccccccccccEEEEEcccEEEEEEEEEccccccccccEEcccccEEEEEEccEEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccEEEcccccEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccccccEEEEEccccccEEEEEEEEEccccccccEEEEccccEEEEEEccEEEEEccccEEEEEEEEccccccccEEEEEEEccccEEEEccccEEEEEccEEEEEEEEEEcccccEEcccccccEEEEEccccccEEEEEcccccEEEcccccccccccccccccEEEEEEEcccEEEEEEEEEcccEEEcccccccEEEEEEEEEEEEccEEEEcccccccccEEEEEHHHcccccccccccEEEEEccccEEEEEEcccccccccccHccccHHHEcEcccccccEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEEEccccccccccccccccccHHcccccccccEEEEcccccEEEEEEEEEcccccEcccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEEcEEEEEEEEEEEEEccccccccccccccccccccccEEEEEEEEccEEEcccEEEEEEccccEEEEEEEEccEEEEEEEccccEEEEEEcccccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEcEEEEEEEccEEEEcccEEEEEEEEEcccccccccHHHHHHEEEEEEEcccEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEEEcccccEEEcccEEEEEccccEEccccEEEEEccEEEEEEEcccccccEEEEEEcccEEEEEEcccEEEEEEEEcEEEEEEEEEEcccEEEEEcEEEEEEEEEEEEEEEEEccEEEEccEEEEEEEccccccEEEEEEEcEEEEEEccccEEEEEEcccccEEEEEccccccccccccccEccccccEEEEEEEEccccEEEEEEEEccccccccccccEcccEEEEEEEccccccccccccccccccccHHHEcccccccEEEEEcccccEEEEEEEEccccccEEEEEcccEEEcccEEEcccccEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEccccccHccccccEEEEEccccccEEEEccccccccEEEEEEEEccEEEEEEEcccccccccEEEEEccHEEcccccEEEEccEEEEEEEccccccccEEEEccccEEEEcccccEEEEEcccEEEEEEEcccEEEEEEEEEEEccEEEEEccccEEEcccccccccEEEEEEccccccEccccccEEEccccccccEEEEccccccccccEEEEEEcccHHHHHHccccccccccEEEEEEEEEccccccccccccEEEEEcccEEEEccccccEEEEEccccccEEEEEEEcccEEEEEccccEEEEEEEccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHcccccccc

mwqlmpetdgsshhllhvplkdsplsdcgglcgdLDVQIELensgafsdlYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEamsieppspvFVLVGAALQYKLKVIrgnipqvvalpsphhrwsvsnssvaQVDNMMGLTQALRLGQTAVIVEdtrvaghtqvsslnvvlpdtlwlyisplsisgdpvegtkaipsVARWFVVSGFQYLIQMKVfsqgpgsqeiyitesddiklsdnqsecwrtfsmpndlvlkhgwrnsriLKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDrikfsldqtngvsesillpwapgiyQEVELMatggcaktssdykwfssdmatVSITASgvvqakkpgkaTVKVVSIFDSFNYDEIVIEvstpssmvmlrnfpVETVVGSHLQAAVTMKTLNGayfyrcdafsssvnwkagseSFIVLNAtkkqpfldklgtvehdislhgppcswahlyasssgrtmLHATLSkdyqhfdrsfdgpivlkassriaaypplivqqagdgsgfggywfnlgqseTTTQMEALDKlylvprthvdvllvggpepweedvDFIETFEIfngkhnhasdgvHIHVVSGSSKNLYGVFCQTLGTFELVFKrgnlvgddhplpavAEVSLSVTCSFPASIAllvdepgtaiLNERKVIQTAAqadrspgrirvtpvtvangqtIRIAAVGisssgeafanssslclgwelsncdglaywddaygsqksaSSWERFLVLQNESGLCVVRatasgfcdakdghhsaQLLEISESFLTDAVRLQLVSTLrvnpeynllffnpdakanlsiaggSCFLEAAVNDSQVVEVIQAPEGLRCLQLmlspkglgTALVTVYdvglappraASALVQVADVDWIKIMSGEEISLMEGRSQSIDLmagiddgstfdsfqytYMDIRVHIEDHIVELidddatsspdggyfsmsSFKIMAKHLGITTLYVSARQqsgheilsqpirvevyapprihphdiflvpgasymltlkggptVGVYVDYTSTDEEIATIHRssgqlfaispgnTTLIATVFGNGDVVICQAFssvkvgvpssvtlnaqsdqlavghempihplfpegdvfSFYELCRNynwtiedekILGFWLgdqlhsenqdlqsaasgeiqfsndldkKELGFIKTLygrsagrtdvattfscdfvsdsysesriYSASISLsvvsdlplalgipvtwvlpphytstsllpssseshgqwdsqshkgsIVYSLLKFCSEkneaaskddisidgdtikttssnhlaciqakdrssgrieiASCVRVAEVAQIrisnryplnvIHLAVGaeceipisyydalgtpfheAHNVILYHAETNYHDVVSInytlngsgKIYLKAKQHGRALVQVSmnrspqksdyVLVSVGaqlypqnpvlhvggsldfsvegfsdqvsghwfsdnesvvhvhmpsgkaeavgigstkvffecpsmklqtTVTVLSknivsidapkevltnipyptkgytFAVRFGDTHKLKALENKAisydceadppfvgyakpwmdldtgnlyclffpyspehllrsvpkskdtspfiSVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLqlnltsdsnktTITILGNTGVEIHWQnqdllkispvhkedigigghaQYEVSVLRTkkfkdkiiftlpangqrvevdvnfepgqreesNRIFASFIGFFAVFSLIVVFSIAILdgrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvDYVRRTIDETPNYRREARRRFNVQNTF

mwqlmpetdgssHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRvaghtqvsslnvvlPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKfsldqtngvSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITAsgvvqakkpgkATVKVVsifdsfnyDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQtaaqadrspgrirvtpvtvangqtIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGeiqfsndldkKELGFIKTLygrsagrtdvATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNeaaskddisidgdtikttssnhlaciqakdrssgrieIASCVRVAEVAqirisnryplNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLsknivsidapkevltnipyptkGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIftlpangqrvevDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGrkrstrsqpsvspatpyatapgtpehsiptvsneqsprtpqpfvdyvrrtidetpnyrrearrrfnvqntf

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIsssgeafansssLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVlpphytstsllpssseshGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRKRSTRSQPSVSpatpyatapgtpEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNYRREARRRFNVQNTF

***************LHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQA***PGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY**********RFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQL********************LDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYT**********************SIVYSLLKFCS************************HLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVS*******SDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLR*******************************ASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFE******SNRIFASFIGFFAVFSLIVVFSIAILD************************************************************************

MWQ***********L*HVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLD********ISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQT***************VTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNC*******************ERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS*SESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTH***ALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPE************SPFISVSVNASLR************ALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQN*******************AQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQ*EESNRIFASFIGFFAVFSLIVVFSIAILDGRKR******************************************YVRRTIDETPNYR*************

***********SHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTS*******************KGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGR**************************************PQPFVDYVRRTIDETPNYRREARRRFNVQNTF

*W***PE*DGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVSGHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVLTNIPYPTKGYTFAVRFGDTHKLKALENKAISYDCEADPPFVGYAKPWMDLDTGNLYCLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDKSSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTKKFKDKIIFTLPANGQRVEVDVNFEPGQREESNRIFASFIGFFAVFSLIVVFSIAILDGRK************************************TPQPFVDYVRRTIDETPNYRREARRRFN*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1803	2.2.26 [Sep-21-2011]
Q5VU65		1888	Nuclear pore membrane gly	no	no	0.714	0.682	0.226	3e-47
Q9D2F7		1881	Nuclear pore membrane gly	yes	no	0.724	0.694	0.22	2e-45
Q8TEM1		1887	Nuclear pore membrane gly	no	no	0.703	0.671	0.233	7e-42
P11654		1886	Nuclear pore membrane gly	no	no	0.709	0.678	0.221	1e-37
Q9QY81		1886	Nuclear pore membrane gly	no	no	0.704	0.673	0.223	3e-36

>sp\|Q5VU65\|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1	Back alignment and function desciption

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 349/1540 (22%), Positives = 630/1540 (40%), Gaps = 252/1540 (16%)

Query: 40   ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
            E+E      D+ +V GI  G  +V V + E  +  +A +++ L V E + + P   +++L
Sbjct: 206  EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265

Query: 99   VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
            VG  ++Y++ K+++G + +V   P  H       HR +++ S    VA +D+   +  A 
Sbjct: 266  VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324

Query: 148  RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
            +LGQT ++     V    V+G     ++ VV P  L   + P    G+            
Sbjct: 325  QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367

Query: 203  RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
            RW +  G  Y+I + VF +   S ++YI  SD++++         T+  P +     L  
Sbjct: 368  RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414

Query: 258  KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
             +G  +  I+KA   G+  + ASLT        +   K ++K  QE+    +I F +  T
Sbjct: 415  VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468

Query: 314  NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
                + +  P  P G+    ++   GG    S ++ W SS+   V +T  GVV A +  G
Sbjct: 469  ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521

Query: 372  KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
             +TV    + + F Y EI I V   + M +L  F  +  +G  ++  + M  +N      
Sbjct: 522  NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580

Query: 427  AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
              F  C   S  +N                   +DK G    ++  I   GP  CS  H+
Sbjct: 581  MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621

Query: 483  YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
             A S G T++  ++++  ++          L++S+  AAY PL                 
Sbjct: 622  AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654

Query: 543  LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
                     +  ++   +  ++  +++  GGP PW  E    F+E     N +       
Sbjct: 655  -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703

Query: 601  VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
              + + S   +N  +Y + C  LG   L F+ GN  G  +P PAV  + +   C+ PAS+
Sbjct: 704  AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763

Query: 659  ALLVDEPGTAILNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFA 717
            ++      T +      +   AQ    P   + + PV+      + +A          F 
Sbjct: 764  SV------TPVYK----VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFD 811

Query: 718  NSSSLCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRAT 768
            N SSL L W+ SN + LA+++D           GS ++     + L +    G  ++   
Sbjct: 812  NFSSLMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVN 870

Query: 769  ASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGG 828
              G+ + K         EIS    +  V L LV  + V PE   ++ +PD K   S+  G
Sbjct: 871  FVGYSEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEG 924

Query: 829  SCFLEAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQV 887
            S +    VN S Q V  I   E    ++L+  P   G   + VYD+ LA    A+A ++V
Sbjct: 925  SGYF--LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRV 980

Query: 888  ADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTY---MDIRVHIEDHIVEL 944
            +D+  +++   +++ + +    ++ ++     GS+   FQ  Y   M++++ +   IV L
Sbjct: 981  SDIQELELDLIDKVEIDKTVLVTVRVL-----GSSKRPFQNKYFRNMELKLQLASAIVTL 1035

Query: 945  IDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHP 1004
               +        Y       + A  +G TTL   A+ + G +  S P  +EV+ P R+ P
Sbjct: 1036 TPMEQQDEYSENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLP 1089

Query: 1005 HDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIAT 1061
              + L+P     +  +GGP     V ++ +++ +A ++R    +G++   +  + T+   
Sbjct: 1090 EKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTV 1149

Query: 1062 VFGNGDVVI-CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC 1118
                G V++  Q    ++V    +V + A + +L    +MP++ +        FSF    
Sbjct: 1150 NEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNAN 1209

Query: 1119 --RNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSA 1176
                ++W++    +L        HSE   LQ                E  F   ++ ++A
Sbjct: 1210 PGLTFHWSMSKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAA 1252

Query: 1177 GRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPS 1236
            GRT +  T  C   S    E  +   S  + ++    L L        P       L+P 
Sbjct: 1253 GRTSIKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPI 1306

Query: 1237 SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKD 1295
            +S+   +  +     + V S +  C   +    +D +  +   +I  T+   +  I+   
Sbjct: 1307 NSQL--KLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFG 1364

Query: 1296 RSSGRIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFH 1349
             +   I   + V+VA V  +R+S++  L            +G      + +Y+++G  FH
Sbjct: 1365 VNQTTI---TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH 1421

Query: 1350 EAHNVILYHAETNYHDVVSI-----NYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDY 1404
              HN  LY A  N  D++ I     NYT         +A   G  LV +   R P  +DY
Sbjct: 1422 -THNTQLYLA-LNRDDLLHIGPGNKNYTYMA------QAVNRGLTLVGLWDRRHPGMADY 1473

Query: 1405 VLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQ-VSGHWFSDNESVVHVHMPSGKAEAVGI 1463
            + V+V   + P   +  VG  + FS    S     G W     +++   + +G   A   
Sbjct: 1474 IPVAVEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSP 1533

Query: 1464 GSTKVFFECPSM---KLQTTVTVLSKNIVSIDAPKEVLTN 1500
            G+  +F + P +     +  V   S+ ++S D  K  LTN
Sbjct: 1534 GTAMIFHDIPGVVKTYREVVVNASSRLMLSYDL-KTYLTN 1572

Homo sapiens (taxid: 9606)

>sp\|Q9D2F7\|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus GN=Nup210l PE=2 SV=2	Back alignment and function description

>sp\|Q8TEM1\|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3	Back alignment and function description

>sp\|P11654\|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210 PE=1 SV=1	Back alignment and function description

>sp\|Q9QY81\|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1803
296087607		1961	unnamed protein product [Vitis vinifera]	0.991	0.911	0.669	0.0
359488807		2363	PREDICTED: nuclear pore membrane glycopr	0.987	0.753	0.670	0.0
255560914		2256	RNA binding protein, putative [Ricinus c	0.974	0.778	0.662	0.0
356513961		2304	PREDICTED: nuclear pore membrane glycopr	0.984	0.770	0.599	0.0
449446702		2257	PREDICTED: LOW QUALITY PROTEIN: nuclear	0.975	0.779	0.592	0.0
297805634		1918	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.968	0.910	0.580	0.0
334188094		1923	protein embryo defective 3012 [Arabidops	0.971	0.911	0.574	0.0
9759492		1962	nuclear pore protein-like [Arabidopsis t	0.971	0.892	0.563	0.0
449489576		1758	PREDICTED: nuclear pore membrane glycopr	0.762	0.781	0.609	0.0
297853498		1722	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.814	0.853	0.578	0.0

>gi\|296087607\|emb\|CBI34863.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2452 bits (6354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1215/1814 (66%), Positives = 1450/1814 (79%), Gaps = 26/1814 (1%)

Query: 1    MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGH 60
            MWQL PETDG   HL+HVPLKDSPLSDCGGLCGDL VQI+LE+ GAFSDLYVVKGIGIGH
Sbjct: 163  MWQLRPETDGLPPHLVHVPLKDSPLSDCGGLCGDLSVQIKLEDGGAFSDLYVVKGIGIGH 222

Query: 61   EMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVAL 120
            E+VSVHLLE +F HMAD I+LTVAEAMS++PPSPVF+L+GAA++Y LKVIRGNIPQVVAL
Sbjct: 223  EVVSVHLLEPQFEHMADKIVLTVAEAMSLDPPSPVFILIGAAVRYTLKVIRGNIPQVVAL 282

Query: 121  PSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWL 180
            PSP+HRWSV NSSVAQVD+ MGL   L LG T V VEDTRVAGH Q+SSL+VVLPDTL L
Sbjct: 283  PSPYHRWSVLNSSVAQVDSQMGLVNVLSLGVTTVTVEDTRVAGHIQMSSLHVVLPDTLCL 342

Query: 181  YISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSD 240
            YI PLS+S DP+EG K+IPS ARW+  SG QYLIQMKVFS GPG QE+YITESD++ L  
Sbjct: 343  YILPLSLSDDPLEGAKSIPSGARWYAFSGQQYLIQMKVFSGGPGGQEVYITESDEVSLQY 402

Query: 241  NQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEI 300
            NQS  W+ F + + + +KH W NSRILK TS+GLG LTASL+YFSG    KEVLKVVQE+
Sbjct: 403  NQSIYWKAFLVSDRIAVKHDWWNSRILKMTSEGLGNLTASLSYFSGQPGRKEVLKVVQEV 462

Query: 301  MVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT 360
            MVC+++KFS D+ + VSE ILLPWAP +YQEV+L ATGGCAK+SSDYKWFSSDMATVS++
Sbjct: 463  MVCEKVKFSFDKRSAVSERILLPWAPAVYQEVDLKATGGCAKSSSDYKWFSSDMATVSVS 522

Query: 361  ASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVT 420
            ASGV+QAKKPGKA VKVVSIFD FNYDE+V+EV+ PSSMVML+NFPVETVVGS LQAAVT
Sbjct: 523  ASGVIQAKKPGKAAVKVVSIFDPFNYDEVVVEVALPSSMVMLQNFPVETVVGSQLQAAVT 582

Query: 421  MKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWA 480
            MK  NGAYFYRCDAFSS V WKAGSESFI++NAT + P LDKL +VE   S++GPPC+W 
Sbjct: 583  MKASNGAYFYRCDAFSSFVRWKAGSESFIIVNATGETPVLDKLESVEPYASVYGPPCAWT 642

Query: 481  HLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYW 540
            ++YASS+GR MLHATL+K+YQH D  F GPIVL+ASSRI AY PL+++QAGDG+ FGGYW
Sbjct: 643  YVYASSAGRAMLHATLTKEYQHHDHPFHGPIVLQASSRIGAYLPLVLRQAGDGNQFGGYW 702

Query: 541  FNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDG 600
             N  Q+E  +Q E LD L+LVP TH+DV+LVGGPE W++ VDF ET +I + +H    DG
Sbjct: 703  INTAQAEAHSQFENLDDLFLVPGTHLDVMLVGGPEWWDKSVDFNETVDILD-EHARLKDG 761

Query: 601  VHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIAL 660
            V +H VS S  +LY V CQ LGT+++ FKRGNLVGDDHPLPAVAEV LS+TCSFP+SI L
Sbjct: 762  VLVHEVSSSYGSLYRVLCQILGTYKIAFKRGNLVGDDHPLPAVAEVELSLTCSFPSSITL 821

Query: 661  LVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSS 720
            + DEP    +NE  VI  A QADR+P RIRVTP+TVANG+TIRIAAVGIS+SG+AFANSS
Sbjct: 822  IADEP----VNEPGVIWAATQADRNPERIRVTPITVANGRTIRIAAVGISNSGKAFANSS 877

Query: 721  SLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHH 780
            SLCL WELSNCD LA+WDD+Y    S+S WERFL+LQNES LC+VRAT  GF     GH 
Sbjct: 878  SLCLKWELSNCDALAFWDDSYDLGGSSSGWERFLILQNESRLCIVRATVIGFAGTVSGHV 937

Query: 781  SAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQ 840
            SA LLE SE+ LTDAVRLQLVS+LRV PE+ LLFFN DAKANLSI GGSCFL+A VNDS+
Sbjct: 938  SAPLLESSENVLTDAVRLQLVSSLRVTPEFKLLFFNSDAKANLSITGGSCFLDAVVNDSR 997

Query: 841  VVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEE 900
            VV+VIQ P GL+CLQL+++PKGLGTALVTVYD+GLAP  +AS++VQVADVDWI+I SGEE
Sbjct: 998  VVDVIQPPPGLQCLQLIVAPKGLGTALVTVYDIGLAPHLSASSVVQVADVDWIRITSGEE 1057

Query: 901  ISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDA-TSSPDGGYFS 959
            ISLMEG  QSI +MAG+DDGSTFD+ QY YM+I+VHIEDHIV+L+DDD   SS  GGY +
Sbjct: 1058 ISLMEGSVQSIIVMAGVDDGSTFDASQYVYMNIQVHIEDHIVDLVDDDNDISSIGGGYVN 1117

Query: 960  MSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTL 1019
               F I+AKHLG+T LYVSARQ SG+EI S  I+VEVYAPPRIHP DIFLVPGA+Y+L +
Sbjct: 1118 SPKFMILAKHLGVTILYVSARQASGYEIASNQIKVEVYAPPRIHPPDIFLVPGAAYVLNV 1177

Query: 1020 KGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKV 1079
            KGGP +GV ++Y S D+ IAT+++SSG+L AISPGN+TL+ATV+G GD VICQA+  +KV
Sbjct: 1178 KGGPQIGVVIEYASLDDRIATVNKSSGRLSAISPGNSTLVATVYGKGDTVICQAYGRIKV 1237

Query: 1080 GVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQL 1139
            GVPS VTLN QS+QL VG EMPI P  P+GD+FSFYELC+NY WT+EDEK+L F + + +
Sbjct: 1238 GVPSLVTLNVQSEQLDVGREMPIFPSLPQGDLFSFYELCKNYKWTVEDEKVLSFHMAEHI 1297

Query: 1140 HSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRI 1199
              +   L S+ S EI+    LD+K+LGFI  LYGRSAGRT VA +F+CDF+S  +S+SR 
Sbjct: 1298 RGDRYGLPSSGSKEIKLPGHLDEKDLGFINMLYGRSAGRTTVAVSFNCDFISSGHSQSRS 1357

Query: 1200 YSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLK 1259
            YSAS+S+SVVS+LPLA G+P+TWVLPP+YT++SLLPSSSES+GQWD  S KG+I YSLL+
Sbjct: 1358 YSASMSISVVSELPLAFGVPITWVLPPYYTTSSLLPSSSESYGQWD-LSRKGTITYSLLR 1416

Query: 1260 FCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRIS- 1318
             C  KNE   KD ISID D IKTT SN+LACIQAKDR++G+  IASCVRVAEVAQIRI+ 
Sbjct: 1417 SCGGKNEEVQKDAISIDRDRIKTTESNNLACIQAKDRTTGKTGIASCVRVAEVAQIRITP 1476

Query: 1319 NRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGK 1378
             ++  +VI LAV AE ++PI++ D LG PFHEA NVI   AETNY D+VSIN T +G G 
Sbjct: 1477 QKFSFHVIDLAVDAEVKLPINFCDVLGNPFHEAFNVIPLDAETNYPDIVSINSTGDGYGN 1536

Query: 1379 IYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVGGSLDFSVEGFSDQVS 1438
            I+LK  +HGRAL++VS+N SP KSDYVLVSVGA L P+NPVLH+GG L+FS+EG  D+VS
Sbjct: 1537 IHLKGIRHGRALLRVSINSSPHKSDYVLVSVGAYLSPRNPVLHLGGHLNFSIEGLKDKVS 1596

Query: 1439 GHWFSDNESVVHVHMPSGKAEAVGIGSTKVFFECPSMKLQTTVTVLSKNIVSIDAPKEVL 1498
            G W S NESV+ + + SG+A+AVG G+T+VFFEC S+KLQTTVTV    IV +DAP E L
Sbjct: 1597 GQWLSGNESVISLDVLSGEAQAVGEGTTQVFFECSSLKLQTTVTVQKGKIVLVDAPMETL 1656

Query: 1499 TNIPYPTKGYTFAVRF-GDT--HKLKALENK-AISYDCEADPPFVGYAKPWMDLDTGNLY 1554
            TN P P KGY F+V+F  DT  H L+   N   + +DC  DPPFVGYAKPW D  TG  Y
Sbjct: 1657 TNAPIPAKGYNFSVKFSSDTYGHDLEGFRNDMGVLFDCRVDPPFVGYAKPWRDFGTGKSY 1716

Query: 1555 CLFFPYSPEHLLRSVPKSKDTSPFISVSVNASLREAHRISGSASASALFVGGFSILEMDK 1614
            CLFFPYSPEHL RSVPKSKD  P+IS+S++AS++E + +SG  SASALFVGGFSILEM K
Sbjct: 1717 CLFFPYSPEHLARSVPKSKDMRPYISLSISASVQETNHVSG--SASALFVGGFSILEMGK 1774

Query: 1615 SSLQLNLTSDSNKTTITILGNTGVEIHWQNQDLLKISPVHKEDIGIGGHAQYEVSVLRTK 1674
                LNLT+ SNKT ITILGNT V+IHW  +D + ISPVHKED GIGG A+YEV VL+ K
Sbjct: 1775 ----LNLTAGSNKTIITILGNTDVDIHWHERDSIMISPVHKEDFGIGGLAKYEVKVLQAK 1830

Query: 1675 KFKDKIIFTLPANGQRVEVDVNFEPGQREESNR-----IFASFIGFFAVFSLIVVFSIAI 1729
            KFKDK++ TLPANGQRVE+DV+++PG+R  S       ++A  +G  A+  L +   I  
Sbjct: 1831 KFKDKVVITLPANGQRVELDVSYDPGERAYSVSTVKVTLWAGVVGCIALLLLTLAIFIFF 1890

Query: 1730 LDGRKRSTRSQPSVSPATPYATAPGTPEHSIPTVSNEQSPRTPQPFVDYVRRTIDETPNY 1789
            LD   R  R++PS  PA     AP TP+   P V N+ SPRTPQPFV+YVRRTI ETP Y
Sbjct: 1891 LD---RPDRARPSNPPANSSIVAPTTPDRRSPAVQNDSSPRTPQPFVEYVRRTIHETPYY 1947

Query: 1790 RREARRRFNVQNTF 1803
             RE RRR N QNT+
Sbjct: 1948 TREGRRRVNPQNTY 1961

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488807\|ref\|XP_002272790.2\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255560914\|ref\|XP_002521470.1\| RNA binding protein, putative [Ricinus communis] gi\|223539369\|gb\|EEF40960.1\| RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513961\|ref\|XP_003525676.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]	Back alignment and taxonomy information

>gi\|449446702\|ref\|XP_004141110.1\| PREDICTED: LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297805634\|ref\|XP_002870701.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297316537\|gb\|EFH46960.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334188094\|ref\|NP_198864.2\| protein embryo defective 3012 [Arabidopsis thaliana] gi\|332007169\|gb\|AED94552.1\| protein embryo defective 3012 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9759492\|dbj\|BAB10497.1\| nuclear pore protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449489576\|ref\|XP_004158353.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297853498\|ref\|XP_002894630.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297340472\|gb\|EFH70889.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1803
UNIPROTKB\|F1NZB4		1888	NUP210 "Uncharacterized protei	0.332	0.317	0.239	2.3e-42
DICTYBASE\|DDB_G0288545		1916	nup210 "nucleoporin 210" [Dict	0.189	0.177	0.250	8.6e-42
ZFIN\|ZDB-GENE-050208-132		1869	nup210 "nucleoporin 210" [Dani	0.312	0.301	0.224	1.9e-39
UNIPROTKB\|F1SPG4		1898	NUP210 "Uncharacterized protei	0.293	0.278	0.228	6.9e-39
UNIPROTKB\|Q8TEM1		1887	NUP210 "Nuclear pore membrane	0.291	0.278	0.240	1.9e-38
MGI\|MGI:1859555		1886	Nup210 "nucleoporin 210" [Mus	0.292	0.279	0.231	5.9e-35
UNIPROTKB\|F1MPW7		1830	NUP210 "Uncharacterized protei	0.295	0.290	0.224	1.3e-34
RGD\|69339		1886	Nup210 "nucleoporin 210" [Ratt	0.292	0.279	0.222	1e-33
MGI\|MGI:1924845		1881	Nup210l "nucleoporin 210-like"	0.217	0.208	0.230	2e-30
UNIPROTKB\|Q5VU65		1888	NUP210L "Nuclear pore membrane	0.222	0.212	0.239	1.3e-28

UNIPROTKB\|F1NZB4 NUP210 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 325 (119.5 bits), Expect = 2.3e-42, Sum P(4) = 2.3e-42
 Identities = 162/677 (23%), Positives = 290/677 (42%)

Query:   567 DVLLVGGPEPW-EEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG---VFCQTLG 622
             D+L  GGP PW +E   F           +  S G+ +     S  N+     V C++LG
Sbjct:   662 DILFEGGPRPWIQEPSKFFRNITA----EDEESIGLSLFAPPMSRNNIQHWVQVSCKSLG 717

Query:   623 TFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQA 682
                +    GN     +P PAV    +   C+ P+ + L      T I    ++  +    
Sbjct:   718 EQVIALTVGNNPSMTNPFPAVEPAVVKFICAVPSRLTL------TPIYGSPQLDLSCPLL 771

Query:   683 DRSPGRIRVTPVTVANGQTIRIAAVGIXXXXXXXXXXXXLCLGWE-----LSNCDG---- 733
              ++    +V PV+      + +AA               L + WE     L+N +     
Sbjct:   772 QQNK---QVVPVSNYRNPVLDLAAYD--QHGSKFDNFSSLSVVWESTKSSLANIEPDMPM 826

Query:   734 -LAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEIS-ESF 791
              L   DD  G Q+     +  LV  ++SG   + ATA+G+   +  H  A  ++   ES 
Sbjct:   827 ELTLKDDGSG-QRKMHGLQTVLV-HHKSGTTAISATATGY---QQSHLKAAKVKTPYESL 881

Query:   792 L--TDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV-IQAP 848
             L  +  + L LV  ++V+P    ++ +PD +A L I  GS +     + + VV V ++  
Sbjct:   882 LPVSATIELILVEDVKVSPTDVSIYNHPDVQAELFIKEGSGYFFINTSVASVVSVALEET 941

Query:   849 EGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRS 908
             +G+    +++ P   G+  V V+D+ LA P  A A V V+D+  + +   +++ +  G++
Sbjct:   942 QGI----VLVHPLLPGSVTVMVHDLCLAFPAPAKAEVYVSDIQELYVRVVDKVEI--GKT 995

Query:   909 QSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAK 968
                 +    D    F +  +  MD+++     IV L+      + D      ++F +   
Sbjct:   996 VKAFIRVLDDSKKPFLAKYFAVMDLKLRAASQIVSLVP--LGEALDD---HTAAFLVHGI 1050

Query:   969 HLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVY 1028
              +G T+L  S   + G  I S P ++EV+ P R+ P  + L+ GA   +T +GGP     
Sbjct:  1051 AIGQTSLTASVADRRGQRINSAPQQIEVFPPFRLLPRKVTLIIGAMIQITSEGGPQPQSN 1110

Query:  1029 VDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGD-VVICQAFSSVKVGVPS 1083
             + ++ +DE+IA+++ S+G +  ++ GN T+   V       G  VV+ Q    V+V   +
Sbjct:  1111 IIFSISDEKIASVN-STGLIRGVAIGNGTVTGVVQAVDAETGKLVVVSQDKVEVEVVQLT 1169

Query:  1084 SVTLNAQSDQLAVGHEMPIHPL-FPEGDV-FSFYELCRN--YNWTIEDEKILGFWLGDQL 1139
             +V + A   ++  G +MP++ +        FSF        ++W++     L        
Sbjct:  1170 AVRIRAPITRMKTGTQMPVYVMGITSSQTPFSFGNAVPGLTFHWSVTKRDTL-------- 1221

Query:  1140 HSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC-DFVSDS-YSES 1197
                  D+++  S E  F   L  K   F   +YGR  GRT +       D  ++  Y+ +
Sbjct:  1222 -----DVKTRHS-EASFQ--LPAK-YNFAMDVYGRVKGRTGLKVVVKVLDPAANQFYNMA 1272

Query:  1198 RIYSASISLSVVSDLPL 1214
             R  S  I + V   L L
Sbjct:  1273 RELSDEIQIQVFEKLHL 1289

GO:0005635 "nuclear envelope" evidence=IEA

DICTYBASE\|DDB_G0288545 nup210 "nucleoporin 210" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-132 nup210 "nucleoporin 210" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SPG4 NUP210 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TEM1 NUP210 "Nuclear pore membrane glycoprotein 210" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1859555 Nup210 "nucleoporin 210" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPW7 NUP210 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|69339 Nup210 "nucleoporin 210" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1924845 Nup210l "nucleoporin 210-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VU65 NUP210L "Nuclear pore membrane glycoprotein 210-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1.n1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020663001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1952 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1803
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.001
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.002

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 1009 LVPGASYMLTLKGGPTVGVYVDYT--STDEEIATIHRSSGQLFAISPGNTTLIATVFGNG 1066
            L+ GA+  L     P+       T  S++  IAT+  S+G + A++ G  T+ AT  G+ 
Sbjct: 14   LLKGATLQLGATVLPSDASNGKVTWSSSNTSIATVSGSTGLVTALAKGTATITATS-GDN 72

Query: 1067 DVVIC 1071
                 
Sbjct: 73   QSATY 77

This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins. Length = 79

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1803
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	100.0
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	99.94
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.76
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.55
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.52
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.19
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	96.86
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	96.63
COG5492		329	Bacterial surface proteins containing Ig-like doma	92.13
COG5492		329	Bacterial surface proteins containing Ig-like doma	91.78
KOG4289		2531	consensus Cadherin EGF LAG seven-pass G-type recep	82.53

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=6.7e-37  Score=365.25  Aligned_cols=667  Identities=22%  Similarity=0.245  Sum_probs=473.0

Q ss_pred             EEeccccEEEEEecccccccccc-ceEEEEE-EecCCCCcccCceeeeeeecCcceEEEEEeccccEEEEEEEEcccCCC
Q 000240          559 YLVPRTHVDVLLVGGPEPWEEDV-DFIETFE-IFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGD  636 (1803)
Q Consensus       559 ~L~~GSs~~~~~~gGP~pw~~e~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~VtC~~lGe~~l~~~vgN~~~~  636 (1803)
                      ++..||+..+...|||++|..|. .+++... ..++.+        +.+.   ..-.|+..|+.+|..+.  +.||....
T Consensus         2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~~t~~~~~~~--------~~~~---~~v~~~is~q~v~~~~~--~~~nl~~i   68 (679)
T KOG1833|consen    2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKTMTQVMSEGG--------PQPQ---SIVHFSISNQTVAVVNR--RGGNLGKI   68 (679)
T ss_pred             cccccCccceEEcCCCcccccchhHHHHHHHHHhhccC--------Cccc---eEEEEeecchhhhhhhh--hccccccc
Confidence            35679999999999999997763 4433100 011111        1111   12478899999998877  88999999


Q ss_pred             CCCCCceEEEEEEEEeecCCeEEEEEcCCCccccccccccccccccCCCCCceeEEeEEeeCCCeEEEEEEEEcCCCCeE
Q 000240          637 DHPLPAVAEVSLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAF  716 (1803)
Q Consensus       637 ~np~Pa~~~~~~~v~C~~P~~L~l~~~eP~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~l~~~r~~~i~v~v~D~~gr~f  716 (1803)
                      ..|.|++.++++.++|..|..+.+..++|.    +++..++......|         +.+.|+....+....--+.+..|
T Consensus        69 ~~~~~~h~~i~~~~~~~~~~~v~~~~~~q~----~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~f  135 (679)
T KOG1833|consen   69 VGPAPVHGEIQTSNECTGPVIVFSQDEVQI----EQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSF  135 (679)
T ss_pred             cccceeehheeeeecccCceEEEEeccchh----hHHHHHHHHhhccc---------eEEecCceEEEEEeecccCccee
Confidence            999999999999999999999999987777    45555444332221         34578776666654444444444


Q ss_pred             eecCCceEEEEecCCCcceEEecccCCccCcCcceEEEEEeecceeEEEEEEEeeeeeccCCcccceecccccceeeeeE
Q 000240          717 ANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAV  796 (1803)
Q Consensus       717 ~N~SSL~i~W~~s~~~~la~~e~~~~~~~~~s~~~~~~~l~~~~G~~~I~At~~gy~~~~~~~~~~~~~~~~~~~l~~~i  796 (1803)
                      .|++-+.          +-||+..   +....+|+++..+++..|.+..+ .+.+.   ..+...               
T Consensus       136 Sns~~~~----------~~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~---~~g~~s---------------  183 (679)
T KOG1833|consen  136 SNSNPLL----------TFHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTK---AAGRTS---------------  183 (679)
T ss_pred             cCCCchh----------eeecchh---hhhccccccchHHHhcccceeeE-EEeee---ccccce---------------
Confidence            4443332          2356443   33446788888888899998887 65543   111111               


Q ss_pred             EEEEeeeeEEcCceeEEeeCCCceEEEEEccceeEEEEEEcCcceEEEEeccCcceeeeEEEeeccceEEEEEEEEeccC
Q 000240          797 RLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLA  876 (1803)
Q Consensus       797 el~lv~~i~l~P~~lti~n~p~~~~~l~i~gGSG~f~~sssn~~Vv~v~~~~~g~~~~~~~vtp~~~G~~~V~v~D~cl~  876 (1803)
                           ..+++     ..+|  .....+...|||+.++..-.++....+...   ..+.+.++.|++.|+++|++.|.|+.
T Consensus       184 -----~~~tl-----~~~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~  248 (679)
T KOG1833|consen  184 -----IKVTL-----HCMN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLV  248 (679)
T ss_pred             -----eEEEE-----EEee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEeccccc
Confidence                 00111     1112  222237899999999998888777766433   46788999999999999999999999


Q ss_pred             CCCceeEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCeEecCCceeeEEEEEeceeEEEEeecCCCCCCCCC
Q 000240          877 PPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGG  956 (1803)
Q Consensus       877 ~~~~a~a~V~V~di~~Iev~~p~~veVevG~tv~~~v~v~d~~g~~f~~s~~~~mdl~~~~~~~iv~l~~~~~~~~p~~e  956 (1803)
                      + .++.|.++|.|+++|+++.+..  +++|.++++.+..-+.+|..|+.++..+||.++......+.+           +
T Consensus       249 ~-~sa~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s-----------~  314 (679)
T KOG1833|consen  249 G-QSADALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVIS-----------T  314 (679)
T ss_pred             c-cccchheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccc-----------c
Confidence            9 7999999999999999997666  899999999999999999999999999999998544444444           3


Q ss_pred             cccceeEEEEEeEEEEEEEEEEEEecCceEEEEeeEEEEEeCCCcccCCeeEEccCceEEEEEeeCCccceEEEEeecCc
Q 000240          957 YFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDE 1036 (1803)
Q Consensus       957 ~~~~s~~~v~a~~~G~TtLtas~~~~~G~~i~S~~~~I~VfpPL~l~P~~ltLv~Gs~~ql~~~GGP~p~~~v~fss~n~ 1036 (1803)
                      ++...+|.++|.++|.++++++++..+|+...|.++++|+|.|+++.|+.++|+||+++|++++|||+|+....|+-.|.
T Consensus       315 ~~sg~~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n  394 (679)
T KOG1833|consen  315 KVSGLRYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNN  394 (679)
T ss_pred             ccccceeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceeccc
Confidence            33468999999999999999999988899888899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcccceEEEEeeeeEEEEEEEecCCceEEEEEeEEEEEEceeeEEEEeecceeeeccEEeEEEEcc-----CCCc
Q 000240         1037 EIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDV 1111 (1803)
Q Consensus      1037 ~VasV~~~~G~Vta~~~G~t~It~~v~~~~g~~~~e~~~~V~V~~l~~VrI~a~~~rl~~G~~~pv~~~g~-----~g~p 1111 (1803)
                      .+|.++. ++++++.++|++++.++..-.+|.+ +++..-+.+..+.|+-+.+....+.+|....+++++.     +..+
T Consensus       395 ~~A~ie~-s~~l~~~apg~ttiy~~~ivG~gav-~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~  472 (679)
T KOG1833|consen  395 MIASIEP-SILLTSSAPGYTTIYGTVIVGDGAV-TEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEP  472 (679)
T ss_pred             ceeeccc-ccceEeeccCCcceeeEEEEecCee-EEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccch
Confidence            9999998 9999999999999999544336665 4667778888888899999999999999999998774     2466


Q ss_pred             ccccceee--EEEEEECCcceeEEEecccccccccccccccccceeecccccccccceEEEEEEccceEEEEEEEEEEec
Q 000240         1112 FSFYELCR--NYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDF 1189 (1803)
Q Consensus      1112 fsf~n~~l--~f~Ws~s~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~f~v~v~~~~~G~t~I~vtv~~~~ 1189 (1803)
                      |.|.....  .-+|.-+  -++.+..+                   .+      .           .|            
T Consensus       473 f~fi~~vvpv~~~~~e~--p~Lnlsar-------------------~~------~-----------t~------------  502 (679)
T KOG1833|consen  473 FAFIKAVVPVKSHRNEV--PLLNLSAR-------------------KH------F-----------TG------------  502 (679)
T ss_pred             hhhccceeEEeeccCcC--cccChhhh-------------------cc------c-----------cc------------
Confidence            66555542  2234300  00000000                   00      0           00            


Q ss_pred             CCCCcccceeeeeeEEEEEEecccccccCCceeecCCCCcccccccCCcccccccccCCceeEEEEEeecccCCCCcccc
Q 000240         1190 VSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAAS 1269 (1803)
Q Consensus      1190 ~s~~~~~~~~lsasi~I~Vve~L~L~~~~p~~~~l~P~~~~~~llP~s~~~l~~t~~~~gs~~i~Y~il~~~~~~~~v~~ 1269 (1803)
                            .-..|+++-.+++...+.+         +.|+..-         .      +-+     +     |        
T Consensus       503 ------rl~tF~t~t~~~~e~gl~v---------~~~~~di---------n------~~~-----v-----~--------  534 (679)
T KOG1833|consen  503 ------RLSTFTTETTITVEDGLSV---------VQPEMDI---------N------TVR-----V-----A--------  534 (679)
T ss_pred             ------ccCcceecceeEEeccceE---------EecccCC---------c------cce-----e-----c--------
Confidence                  0122334434444444443         2332210         0      000     0     1        


Q ss_pred             ccceeccCCeEEeeCcceeEEEEEEeccCcceeEEEEEEEcceeEEEEEec-CCcceeeeecCcEEEEEEEEeccCCCcc
Q 000240         1270 KDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNR-YPLNVIHLAVGAECEIPISYYDALGTPF 1348 (1803)
Q Consensus      1270 ~d~~~I~~g~i~t~~~~G~a~i~v~d~~~g~qt~~~~V~Vs~V~~l~i~~~-~~~~~~~lpvG~s~~~~V~~~D~~G~~F 1348 (1803)
                      .|    +++..++....--+++.-.|...+   +.++++++.+.+.|...+ .+.+....++   +......++-.+-+|
T Consensus       535 ~d----N~~l~ktt~~lqA~l~~~~d~tS~---ia~~~~~s~v~q~r~ks~~ip~h~~dsai---le~~~~~v~~l~vt~  604 (679)
T KOG1833|consen  535 PD----NSQLKKTTAWLQASLSVESDFTSR---IAISADGSLVTQGREKSAAIPVHNVDSAI---LETVLIPVTVLRVTS  604 (679)
T ss_pred             CC----CccceeEeecccceEEEeeccccc---eEeecchhhhhccccCCCCCcccccchhh---heeecceeeeeeeEe
Confidence            11    222223333333355555555433   778899999988887655 2444444454   444555666777777


Q ss_pred             ccccceEEEEEEEceeeeEEEEeeecCCceEEEEEeeeeeEEEEEEeccCCCceeEEEEeeeeEEecCCCeEEec
Q 000240         1349 HEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKAKQHGRALVQVSMNRSPQKSDYVLVSVGAQLYPQNPVLHVG 1423 (1803)
Q Consensus      1349 ~~~~~~i~l~~~~n~~dlv~i~~~~~~n~t~~v~av~~G~t~L~v~d~~~~~isdyi~v~V~~~I~P~~~~L~vG 1423 (1803)
                      .+.+....++.+.++.+++.+..+.. -..-+++..+.|.++.+++...+..-.+|+.+++.....|+..+.+.|
T Consensus       605 l~vhg~ta~~~~~ens~~~FLnt~~~-~pv~yv~~~arG~al~~~sns~n~rph~~vl~p~la~~~~Q~~~i~~~  678 (679)
T KOG1833|consen  605 LDVHGTTALKSAFENSPLIFLNTGAA-DPVKYVPQEARGVALVSLSNSTNHRPHLLVLIPYLACCVVQHWLISIR  678 (679)
T ss_pred             ecccchhhhhhhhcCCceEEeecccc-cceEEeeccccCceeeeeccCCCCCCcceEEeChhhcccccceEEecc
Confidence            77776666778888899999998752 335578888999999999977777777999999999999998877665

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1803
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
3ncx_A		189	Intimin, intimin adherence protein; intimin TIR, c	2e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 75.7 bits (185), Expect = 1e-13
 Identities = 115/758 (15%), Positives = 204/758 (26%), Gaps = 258/758 (34%)

Query: 7   ETDGSSHH---LLHVPLKDSPLSDCGGLCGDLDVQ-IELENSGAFSDLYVVKGIGIGHEM 62
           ET    +    +L V               + D + ++       S   +   I     +
Sbjct: 10  ETGEHQYQYKDILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 63  VSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPS 122
                L   F       LL+       +    V   V   L+   K +   I      PS
Sbjct: 62  SGTLRL---F-----WTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 123 PHHRWSVSNSSVAQVDN-------------MMGLTQALRLGQTA--VIVEDTRVAGHTQV 167
              R  +        DN              + L QAL   + A  V+++    +G T  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-W 165

Query: 168 SSLNVVLPDTL---------WLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKV 218
            +L+V L   +         WL +   +     +E  + +                    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------------LYQIDPN 212

Query: 219 FSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDL-VLKHGWRNSRILKA---TSQGL 274
           ++               I+    +    + +   N L VL +   N++   A   + + L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-NAKAWNAFNLSCKIL 269

Query: 275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
             LT   T F  + D           +    +  + D+     +S+LL +     Q++  
Sbjct: 270 --LT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPR 320

Query: 335 MATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEI--VIE 392
                            +      I  S      + G AT      +   N D++  +IE
Sbjct: 321 EVLTT------------NPRRLSIIAES-----IRDGLATWDN---WKHVNCDKLTTIIE 360

Query: 393 VSTPSSMVMLRNF-PVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVN---------WK 442
            S       L    P E             +      F R   F  S +         W 
Sbjct: 361 SS-------LNVLEPAE------------YR----KMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 443 AGS--ESFIVLN------ATKKQP----------FLDKLGTVEHDISLHGPPCSWAHLYA 484
                +  +V+N        +KQP          +L+    +E++ +LH           
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----------- 446

Query: 485 SSSGRTML-HATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN- 542
               R+++ H  + K +   D                  PP +     D      Y+++ 
Sbjct: 447 ----RSIVDHYNIPKTFDSDDLI----------------PPYL-----D-----QYFYSH 476

Query: 543 ----LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHAS 598
               L   E   +M     ++L                   D  F+E       K  H  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-------------------DFRFLE------QKIRH-- 509

Query: 599 DGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHP------------LPAVAEV 646
                     ++ N  G    TL   +  +K    + D+ P            LP + E 
Sbjct: 510 --------DSTAWNASGSILNTLQQLKF-YKP--YICDNDPKYERLVNAILDFLPKIEEN 558

Query: 647 SLSVTCSFPASIALLVDEPGTAILNERKVIQTAAQADR 684
            +    +    IAL+      AI  E        Q  R
Sbjct: 559 LICSKYTDLLRIALM--AEDEAIFEE-----AHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A Length = 189	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1803
d1f00i2		89	b.1.14.1 (I:753-841) Intimin {Escherichia coli [Ta	2e-05

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Length = 89	Back information, alignment and structure


class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKA 373
           G      LP     Y +V L A+G     +  Y W S++ A  S+ A SG V  K+ G  
Sbjct: 13  GTGVKGKLPTVWLQYGQVNLKASG----GNGKYTWRSANPAIASVDASSGQVTLKEKGTT 68

Query: 374 TVKVVS 379
           T+ V+S
Sbjct: 69  TISVIS 74

PyMOL of d1f00i2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1803
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	98.1
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	96.01
d1cwva4		91	Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	80.31

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=4.3e-06  Score=60.09  Aligned_cols=69  Identities=35%  Similarity=0.497  Sum_probs=55.2

Q ss_pred             EECCCCCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEEC-CCEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCC
Q ss_conf             90275672157999992368899860699606951499900-707994477549999993038740347999994663
Q 000240          321 LLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPS  397 (1803)
Q Consensus       321 ~lP~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VasV~~-~Gvvt~~~~G~t~I~a~d~~n~~n~~~~~V~V~~p~  397 (1803)
                      .+|.....+.+++|.++||.+    .|.|+|+|+.||+|+. .|++++.+.|+++|+|.+..+.    .+...|..|.
T Consensus        19 ~~~~~~~~~~~~~l~~~~~~~----~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~g~----~at~tvt~~~   88 (89)
T d1f00i2          19 KLPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQ----TATYTIATPN   88 (89)
T ss_dssp             SCCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETTTE----EEEEEECCCS
T ss_pred             CCCCEEEEEEEEEEEECCCCC----CEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECCCC----EEEEEEECCC
T ss_conf             377356620589987736897----289997999999997898899996608999999979999----9999998578

PyMOL of d1f00i2

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	Back information, alignment and structure