Citrus Sinensis ID: 000279
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1729 | 2.2.26 [Sep-21-2011] | |||||||
| Q06453 | 408 | Homeobox protein aristale | yes | no | 0.054 | 0.230 | 0.318 | 1e-06 | |
| P20269 | 134 | Homeobox protein ceh-5 OS | yes | no | 0.032 | 0.417 | 0.516 | 3e-06 | |
| Q90476 | 405 | LIM/homeobox protein Lhx1 | no | no | 0.049 | 0.212 | 0.356 | 5e-06 | |
| Q1KKT1 | 265 | Homeobox protein Hox-D11a | N/A | no | 0.039 | 0.260 | 0.376 | 8e-06 | |
| Q9DDU0 | 284 | Homeobox protein Hox-A11a | no | no | 0.037 | 0.225 | 0.406 | 1e-05 | |
| P31258 | 297 | Homeobox protein Hox-A11 | yes | no | 0.037 | 0.215 | 0.390 | 3e-05 | |
| Q1KL17 | 283 | Homeobox protein Hox-A11a | N/A | no | 0.049 | 0.303 | 0.325 | 9e-05 |
| >sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 21 NNNNHSNEGQQGKPKRQMK------TPFQLETLEKAYASETYPSESTRAELSEKLGLSDR 74
++ N E + PKR+ + T FQLE LEKA++ YP TR EL+ K+GL++
Sbjct: 68 SDGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEA 127
Query: 75 QLQMWFCHRRLKDKKEKENPPKK-------------MRKNVAVVMPESPIDEL 114
++Q+WF +RR K +K+++ P+ M+ V +P +P L
Sbjct: 128 RIQVWFQNRRAKWRKQEKVGPQSHPYNPYLPGGAATMQTVVGAALPPNPFTHL 180
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Involved in the morphogenesis of proximal and distal pattern elements in a subset of appendages. Also has a role in early imaginal disk development. Drosophila melanogaster (taxid: 7227) |
| >sp|P20269|HM05_CAEEL Homeobox protein ceh-5 OS=Caenorhabditis elegans GN=ceh-5 PE=4 SV=4 | Back alignment and function description |
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| >sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q1KKT1|HXDBA_TAKRU Homeobox protein Hox-D11a OS=Takifugu rubripes GN=hoxd11a PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9DDU0|HXABA_DANRE Homeobox protein Hox-A11a OS=Danio rerio GN=hoxa11a PE=2 SV=1 | Back alignment and function description |
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| >sp|P31258|HXA11_CHICK Homeobox protein Hox-A11 OS=Gallus gallus GN=HOXA11 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q1KL17|HXABA_TAKRU Homeobox protein Hox-A11a OS=Takifugu rubripes GN=hoxa11a PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1729 | ||||||
| 255536725 | 1732 | homeobox protein, putative [Ricinus comm | 0.962 | 0.960 | 0.641 | 0.0 | |
| 359483496 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.971 | 0.608 | 0.0 | |
| 224125578 | 1423 | predicted protein [Populus trichocarpa] | 0.808 | 0.982 | 0.659 | 0.0 | |
| 224077058 | 1440 | predicted protein [Populus trichocarpa] | 0.820 | 0.984 | 0.673 | 0.0 | |
| 449479573 | 1750 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.950 | 0.589 | 0.0 | |
| 297740429 | 1682 | unnamed protein product [Vitis vinifera] | 0.945 | 0.971 | 0.598 | 0.0 | |
| 356546621 | 1755 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.949 | 0.599 | 0.0 | |
| 124360728 | 1795 | DDT; Homeodomain-related [Medicago trunc | 0.943 | 0.908 | 0.581 | 0.0 | |
| 357446737 | 1796 | Homeobox protein Hox-C4 [Medicago trunca | 0.943 | 0.908 | 0.580 | 0.0 | |
| 449433800 | 1675 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.961 | 0.581 | 0.0 |
| >gi|255536725|ref|XP_002509429.1| homeobox protein, putative [Ricinus communis] gi|223549328|gb|EEF50816.1| homeobox protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2035 bits (5273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1117/1741 (64%), Positives = 1330/1741 (76%), Gaps = 77/1741 (4%)
Query: 31 QGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKE 90
Q +PKRQMKTPFQLE LEKAYA +TYPSE RAELS++L L+DRQLQMWFCHRRLKDK +
Sbjct: 27 QSRPKRQMKTPFQLEALEKAYALDTYPSEKVRAELSQRLNLTDRQLQMWFCHRRLKDKDK 86
Query: 91 KE----NPPKKMRKNVAVVMPESPIDELRAG-AEPGSDYGSGSGSGSSPYLMELRNAVGS 145
KE P + RK AV + ESP++E+RA EPGSD GSGSGSGSSP+ M+ R V +
Sbjct: 87 KEEKKETPSNRKRK--AVHLSESPVEEMRAIIPEPGSDDGSGSGSGSSPF-MDPRKVVSA 143
Query: 146 SRGLMDDMPIVRRSYESQ-QSIMELRAIACVEAQLGEPLREDGPILGMEFDSLPPDAFGA 204
D+P+ RR YES QS+MELRAIACVEAQLGEPLR+DGPILGMEFD LPPDAFG
Sbjct: 144 ------DVPMNRRYYESSPQSVMELRAIACVEAQLGEPLRDDGPILGMEFDPLPPDAFGE 197
Query: 205 PIAGSSEQQKRSGHPYESKIYDRYDTKSNKVIPRAHHEYQSLSDQ--------------P 250
PI+ EQQKRS H Y+ K+Y+R++TKS+K R HEYQ L DQ P
Sbjct: 198 PIS-MVEQQKRSAHSYDGKVYERHNTKSSKAFARVFHEYQFLPDQSSIRSDAYGQVAQSP 256
Query: 251 YFHGSPIDGSRARTSFLHANEPSSRVHGVQGHVARVRVLSQQDKPAHIFSSPNGGEDSLL 310
Y H SP+D R R S + +EP SR HGVQG +RVR+ SQ +K H+FSSP +D LL
Sbjct: 257 Y-HDSPVDNLRGRASLVLGDEPLSRGHGVQG--SRVRLFSQPEKKGHVFSSPRRDDDYLL 313
Query: 311 QRESTSNNRKNAQSTSHPIFGTEDPYLLSDGQTFNNDAEQRMEKKRKCDEARIAREVEAN 370
Q +S +NNR +AQ++SHPI G+E+P SD Q + + + MEKKRK DEAR R+ EAN
Sbjct: 314 QHDSYTNNRISAQTSSHPIMGSENPDGFSDAQILHTETDVWMEKKRKIDEARTVRDPEAN 373
Query: 371 EIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLMRERQREEERSLREQKREME 430
E RI+KELE++D LRRKNEER++K+ME+ +RERRKEEERLMRERQREEERSLREQKRE+E
Sbjct: 374 EYRIRKELEKKDQLRRKNEERIKKDMERQDRERRKEEERLMRERQREEERSLREQKRELE 433
Query: 431 RREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATARKMAKESMDLIEDEQLELMD 490
RREKFLQKEYLRAEK R KEELR EK+A KR+ AIEKATAR++AKES+DLIEDEQLELM+
Sbjct: 434 RREKFLQKEYLRAEKMRQKEELRKEKEAVKRQAAIEKATARRIAKESLDLIEDEQLELME 493
Query: 491 LAAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLM 550
+A ASKGL+SI+HL+ + LQ+L+SFRDSLS+FPP++V+L +PF++QPW DSEEN+GNLLM
Sbjct: 494 IAVASKGLASIVHLNYDALQSLESFRDSLSMFPPQSVQLTKPFAIQPWMDSEENIGNLLM 553
Query: 551 VWRFFITFADVLGLWPFTLDEFVQAFHDHESRLLGEIHLALLKSIIKDIEDVARTPSTGL 610
VWRFFITFADV+GLWPFTLDEFVQAFHD++SRLLGE+H++LL+ IIKDIEDVARTPS GL
Sbjct: 554 VWRFFITFADVIGLWPFTLDEFVQAFHDYDSRLLGEVHVSLLRLIIKDIEDVARTPSIGL 613
Query: 611 GMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKR 670
G NQY ANPEGGHP+I+EGAY WGFDIRNWQ+ LNP+TW EIFRQLALSAGFGP+LKK+
Sbjct: 614 GTNQYSPANPEGGHPQIVEGAYMWGFDIRNWQRHLNPVTWPEIFRQLALSAGFGPRLKKK 673
Query: 671 SSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAA 730
+ W +GDN E KGCED +ST+RNGSAAENAFA MRE+GLLLPRRSRH+LTPGTVKFAA
Sbjct: 674 GTAWTYLGDNDEVKGCEDTISTLRNGSAAENAFALMRERGLLLPRRSRHRLTPGTVKFAA 733
Query: 731 FHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCV 790
FHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRD KLFERIAPSTYC+
Sbjct: 734 FHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDQKLFERIAPSTYCL 793
Query: 791 RPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVERDEDSECDVEEDPEVEDLATP 850
R A+RKDPADAEAIL+AARKKIRIFENGFLGG+DADDVERDE+SE DVEEDPEV+DLATP
Sbjct: 794 RAAYRKDPADAEAILSAARKKIRIFENGFLGGDDADDVERDEESEGDVEEDPEVDDLATP 853
Query: 851 SSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKDARCQGTADNY 910
+ANK+ +EANTC SGKDN C+ V LS++NE+ K SS N KDA+
Sbjct: 854 LTANKSAVHSNEANTCSGSGKDNVCSGVPLSIKNELVKEPSSVPSNGLKDAKTPSI--EQ 911
Query: 911 VAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNS 970
+D A+++++ENIEIDESK GESWIQGLAE +Y+HLSVEERLNALVAL+GIANEGN+
Sbjct: 912 CVAQDVVAANIDEENIEIDESKSGESWIQGLAEAEYAHLSVEERLNALVALVGIANEGNT 971
Query: 971 IRAVLEDRLEAANALKKQMWAEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGG 1030
IR+VLEDRLEAANALKKQMWAEAQLD+SRLKE+ ++KLDF+ ++G +AE +ASSA EG
Sbjct: 972 IRSVLEDRLEAANALKKQMWAEAQLDRSRLKEDIMSKLDFSSSIGVRAELQVASSAVEGS 1031
Query: 1031 QSPLPVFVDNKN-EASPSLAEDQKPMFGSQVFQNHLSEFPNERTVAVQDPSTGLDNLATQ 1089
QSPL + VD+K+ EASPS EDQK + S+ P E+ + VQDPS+ DN ++Q
Sbjct: 1032 QSPL-LLVDSKSKEASPSTGEDQKSLLASE-------SVPTEKQLVVQDPSSNPDNFSSQ 1083
Query: 1090 QHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFV 1149
QHGY SKRSRSQLKAYI H+AEE YVYRSLPLGQDRRRNRYWQF SAS+NDPCSG IFV
Sbjct: 1084 QHGYGSKRSRSQLKAYIGHIAEETYVYRSLPLGQDRRRNRYWQFVASASKNDPCSGWIFV 1143
Query: 1150 ELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVGQ 1209
ELHDG WRLID+ EAFDALLSSLD RG RESHLRIMLQK+E SFKD +RRNL T
Sbjct: 1144 ELHDGNWRLIDSEEAFDALLSSLDTRGVRESHLRIMLQKVEKSFKDNIRRNLHSRATA-- 1201
Query: 1210 SWTAIKNEAAEMDVDPDF-ASSDSPSSTVCGLNSDTLETSSSFRIELGRNEIEKKAALER 1268
+ EA E D A SP+S VCG N DT TSS FRIELGRNE+EKK AL+R
Sbjct: 1202 -----ETEACEADSSSICSAGYGSPTSMVCGSNLDTSNTSSLFRIELGRNEMEKKGALKR 1256
Query: 1269 FQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVD 1328
+QDFQ WMW+ECFNSL+LCA K K RC QLL C+ C DSYL ED HC SCH+TF +
Sbjct: 1257 YQDFQKWMWKECFNSLTLCAMKYGKKRCIQLLATCEWCFDSYLAEDTHCLSCHQTFSTAN 1316
Query: 1329 KSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDE 1388
KS EH +QC++KTKL D V DSSLP GIR LK L ++IE +P EALE+ WT+
Sbjct: 1317 KSFNIFEHEVQCKDKTKL---DHGVCDSSLPPGIRSLKALLSLIEVSVPAEALESFWTEN 1373
Query: 1389 RRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFETTKELLGSSFTC-------AD 1441
RKTW MKLN SSS EE+LQ+LT+LES IKR LS+NFE TKE G S AD
Sbjct: 1374 HRKTWAMKLNKSSSTEELLQMLTVLESAIKRDCLSANFEMTKEFSGGSILSHSALHSRAD 1433
Query: 1442 PWSVPILPWIPKTTAAVALRLLELDASIMYVKPEKPEQFEEDKEANERVIPSRYLPLKNK 1501
SVP+LPWIPKTTAAVALRL +LDASI Y++ EK E E+ +PSRY PLKNK
Sbjct: 1434 LRSVPVLPWIPKTTAAVALRLFDLDASIAYIQREKAEPSEDKPIKLFMKLPSRYSPLKNK 1493
Query: 1502 EVVLKELDQDRLVKEENYSNLAGKRKNYRR-GKGNRDHGWSRKYHKKTPSITADVGRRTA 1560
EV LKEL Q+ VKE+ ++++ KR + +R G+G D G+ K K+ P I ++ RR A
Sbjct: 1494 EVELKELKQEH-VKEDRFTDVRNKRNSCKRGGRGGSDQGYGTKSRKRVPGIKSNANRRNA 1552
Query: 1561 REHEGLNLRLKQQGLRTNGR-----GRRTVRKRADRTSKNETFQGQMGHMVIPDSSSGLH 1615
E LN+ +QQG RT + R ++RA+ ET ++ V+P S G
Sbjct: 1553 GEIGKLNMGPRQQGRRTTAQLSGRGRRTVRKRRAEVMVAEETLINRLSDTVVPRSYGGSL 1612
Query: 1616 RNLDEEEWGVGKERMINMEDAENSNSAEAVDSDDNVQAVEYEQGNWEVGFNGATNGWNRD 1675
R+L EE+WG K M +++DA+NSNS EA +SDDNV+A E+EQGNWE F+ NGWNR+
Sbjct: 1613 RSLAEEDWGDEKIGM-DVDDADNSNSVEAAESDDNVEAEEFEQGNWEQSFSRGFNGWNRN 1671
Query: 1676 VMEVSDEDEDAFGDDAGIEEAVDEYSEGNIDMSEAS----DQNGI--DDGVDSAAS-EYS 1728
+E+SD+D DA GDD IE+A E SE +ID SE S + N + D+G DS AS +YS
Sbjct: 1672 SIEMSDDDGDASGDDNVIEDAGVEDSEEDIDTSEGSGRVPNNNKMENDEGTDSEASDDYS 1731
Query: 1729 D 1729
+
Sbjct: 1732 E 1732
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483496|ref|XP_002273559.2| PREDICTED: uncharacterized protein LOC100247033 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224125578|ref|XP_002329839.1| predicted protein [Populus trichocarpa] gi|222870901|gb|EEF08032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224077058|ref|XP_002305113.1| predicted protein [Populus trichocarpa] gi|222848077|gb|EEE85624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449479573|ref|XP_004155639.1| PREDICTED: uncharacterized protein LOC101230914 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297740429|emb|CBI30611.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356546621|ref|XP_003541723.1| PREDICTED: uncharacterized protein LOC100777465 [Glycine max] | Back alignment and taxonomy information |
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| >gi|124360728|gb|ABN08705.1| DDT; Homeodomain-related [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357446737|ref|XP_003593644.1| Homeobox protein Hox-C4 [Medicago truncatula] gi|355482692|gb|AES63895.1| Homeobox protein Hox-C4 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449433800|ref|XP_004134685.1| PREDICTED: uncharacterized protein LOC101220962 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1729 | ||||||
| TAIR|locus:2032505 | 1705 | HB-1 "homeobox-1" [Arabidopsis | 0.337 | 0.341 | 0.626 | 7.6e-304 | |
| TAIR|locus:2167628 | 1694 | RLT2 "RINGLET 2" [Arabidopsis | 0.326 | 0.332 | 0.547 | 9.5e-263 | |
| TAIR|locus:2159537 | 723 | AT5G08630 "AT5G08630" [Arabido | 0.134 | 0.322 | 0.259 | 5.6e-12 | |
| DICTYBASE|DDB_G0282237 | 885 | DDB_G0282237 "DDT domain-conta | 0.047 | 0.092 | 0.349 | 1.2e-09 | |
| WB|WBGene00000430 | 134 | ceh-5 [Caenorhabditis elegans | 0.029 | 0.380 | 0.509 | 2.8e-06 | |
| RGD|1595784 | 108 | Hoxc9 "homeobox C9" [Rattus no | 0.028 | 0.462 | 0.38 | 0.00014 | |
| UNIPROTKB|P18866 | 108 | Hoxc8 "Homeobox protein Hox-C8 | 0.028 | 0.462 | 0.38 | 0.00014 | |
| UNIPROTKB|F1Q361 | 291 | SHOX "Uncharacterized protein" | 0.043 | 0.261 | 0.358 | 0.00014 | |
| UNIPROTKB|O15266 | 292 | SHOX "Short stature homeobox p | 0.043 | 0.260 | 0.358 | 0.00014 | |
| UNIPROTKB|F1P4U7 | 109 | HOXD11 "Homeobox protein Hox-D | 0.032 | 0.513 | 0.357 | 0.00023 |
| TAIR|locus:2032505 HB-1 "homeobox-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1816 (644.3 bits), Expect = 7.6e-304, Sum P(4) = 7.6e-304
Identities = 375/599 (62%), Positives = 441/599 (73%)
Query: 458 AAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRD 517
A +RK+AIEKATAR++AKESMDLIEDEQLELM+LAA SKGL S++ LD +TLQNL+ +RD
Sbjct: 465 AIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRD 524
Query: 518 SLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH 577
SLS FPPK+++LK PF++ PW DS+E VGNLLMVWRF I+F+DVL LWPFTLDEF+QAFH
Sbjct: 525 SLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFH 584
Query: 578 DHESRLLGEIHLALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFD 637
D++SRLLGEIH+ LL+SII+D+EDVARTP +G+G NQY ANPEGGHP+I+EGAYAWGFD
Sbjct: 585 DYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFD 644
Query: 638 IRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGS 697
IR+W++ LNPLTW EI RQLALSAGFGPKLKK+ S+ N GD E KGCED++STIRNG+
Sbjct: 645 IRSWKKHLNPLTWPEILRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGT 704
Query: 698 AAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 757
AAE+AFA MREKGLL PR+SRH+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR
Sbjct: 705 AAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 764
Query: 758 DLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPXXXXXXXXXXRKKIRIFEN 817
DLTTSKTPEASISVALTRD KLFERIAPSTYCVR + KDP RKKIR FEN
Sbjct: 765 DLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFEN 824
Query: 818 GFLGGEDAXXXXXXXXXXXXXXXXXXXXXLATPSSANKNIDRYDEANTCLVSGKDNACND 877
GF G ED LAT +SA+K+ EAN G D D
Sbjct: 825 GFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAV-LGEANVLSGKGVDTMFCD 883
Query: 878 VALSVQNEVDKGFSSFSLNDSKDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESW 937
V V++E++K FSS + K Q + + V G + IDES G+SW
Sbjct: 884 VKADVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVG-GVDAV------IDESNQGQSW 936
Query: 938 IQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDK 997
IQGL EGDY HLSVEERLNALVAL+GIANEGNSIR LEDR+EAANALKKQMWAEAQLD
Sbjct: 937 IQGLTEGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDN 996
Query: 998 SRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPS-LAEDQKPM 1055
S +++ + KLD SK E+ + + F + PS L ++ KP+
Sbjct: 997 SCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSF-----DRDPSQLLDETKPL 1048
|
|
| TAIR|locus:2167628 RLT2 "RINGLET 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2159537 AT5G08630 "AT5G08630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0282237 DDB_G0282237 "DDT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00000430 ceh-5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| RGD|1595784 Hoxc9 "homeobox C9" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P18866 Hoxc8 "Homeobox protein Hox-C8" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q361 SHOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O15266 SHOX "Short stature homeobox protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P4U7 HOXD11 "Homeobox protein Hox-D11" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.124.214.1 | hypothetical protein (1423 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1729 | |||
| pfam02791 | 61 | pfam02791, DDT, DDT domain | 2e-23 | |
| pfam00046 | 57 | pfam00046, Homeobox, Homeobox domain | 2e-17 | |
| smart00571 | 63 | smart00571, DDT, domain in different transcription | 1e-16 | |
| cd00086 | 59 | cd00086, homeodomain, Homeodomain; DNA binding dom | 2e-14 | |
| smart00389 | 57 | smart00389, HOX, Homeodomain | 3e-14 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 9e-09 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| COG5576 | 156 | COG5576, COG5576, Homeodomain-containing transcrip | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-06 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 6e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-05 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 2e-05 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 5e-05 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 5e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-05 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 7e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 9e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 2e-04 | |
| TIGR00570 | 309 | TIGR00570, cdk7, CDK-activating kinase assembly fa | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-04 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-04 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 5e-04 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 6e-04 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 7e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-04 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 8e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 8e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 9e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 0.001 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.001 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.001 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.001 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.001 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.001 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.001 | |
| COG1842 | 225 | COG1842, PspA, Phage shock protein A (IM30), suppr | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 0.002 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| pfam00769 | 244 | pfam00769, ERM, Ezrin/radixin/moesin family | 0.003 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.003 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.003 | |
| pfam06658 | 142 | pfam06658, DUF1168, Protein of unknown function (D | 0.003 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.004 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 0.004 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.004 | |
| COG4487 | 438 | COG4487, COG4487, Uncharacterized protein conserve | 0.004 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.004 |
| >gnl|CDD|202398 pfam02791, DDT, DDT domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-23
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 542 EENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 600
E G+LLMVW F TF +VLGL PFTLD+F +A +S LLGE+H+ALLK ++ D E
Sbjct: 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEE 60
Query: 601 D 601
D
Sbjct: 61 D 61
|
This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61 |
| >gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain | Back alignment and domain information |
|---|
| >gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >gnl|CDD|197696 smart00389, HOX, Homeodomain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family | Back alignment and domain information |
|---|
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1729 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| KOG0484 | 125 | consensus Transcription factor PHOX2/ARIX, contain | 99.57 | |
| KOG0850 | 245 | consensus Transcription factor DLX and related pro | 99.53 | |
| KOG0485 | 268 | consensus Transcription factor NKX-5.1/HMX1, conta | 99.52 | |
| KOG0842 | 307 | consensus Transcription factor tinman/NKX2-3, cont | 99.49 | |
| KOG0488 | 309 | consensus Transcription factor BarH and related HO | 99.45 | |
| KOG0489 | 261 | consensus Transcription factor zerknullt and relat | 99.42 | |
| KOG2251 | 228 | consensus Homeobox transcription factor [Transcrip | 99.41 | |
| KOG0843 | 197 | consensus Transcription factor EMX1 and related HO | 99.4 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 99.4 | |
| KOG0492 | 246 | consensus Transcription factor MSH, contains HOX d | 99.37 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 99.33 | |
| KOG0494 | 332 | consensus Transcription factor CHX10 and related H | 99.33 | |
| KOG0487 | 308 | consensus Transcription factor Abd-B, contains HOX | 99.3 | |
| KOG0844 | 408 | consensus Transcription factor EVX1, contains HOX | 99.3 | |
| PF00046 | 57 | Homeobox: Homeobox domain not present here.; Inter | 99.23 | |
| KOG4577 | 383 | consensus Transcription factor LIM3, contains LIM | 99.22 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 99.22 | |
| KOG0848 | 317 | consensus Transcription factor Caudal, contains HO | 99.2 | |
| TIGR01565 | 58 | homeo_ZF_HD homeobox domain, ZF-HD class. This mod | 99.18 | |
| KOG3802 | 398 | consensus Transcription factor OCT-1, contains POU | 99.09 | |
| KOG0491 | 194 | consensus Transcription factor BSH, contains HOX d | 99.09 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.08 | |
| KOG0493 | 342 | consensus Transcription factor Engrailed, contains | 99.07 | |
| KOG0486 | 351 | consensus Transcription factor PTX1, contains HOX | 99.05 | |
| smart00389 | 56 | HOX Homeodomain. DNA-binding factors that are invo | 99.01 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 98.98 | |
| cd00086 | 59 | homeodomain Homeodomain; DNA binding domains invol | 98.98 | |
| COG5576 | 156 | Homeodomain-containing transcription factor [Trans | 98.97 | |
| KOG0847 | 288 | consensus Transcription factor, contains HOX domai | 98.91 | |
| KOG0483 | 198 | consensus Transcription factor HEX, contains HOX a | 98.85 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 98.81 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 98.78 | |
| KOG0849 | 354 | consensus Transcription factor PRD and related pro | 98.64 | |
| KOG1168 | 385 | consensus Transcription factor ACJ6/BRN-3, contain | 98.59 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.46 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 98.42 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.29 | |
| PF05066 | 72 | HARE-HTH: HB1, ASXL, restriction endonuclease HTH | 98.11 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.06 | |
| KOG0775 | 304 | consensus Transcription factor SIX and related HOX | 98.01 | |
| KOG0774 | 334 | consensus Transcription factor PBX and related HOX | 98.01 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 97.97 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.71 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 97.67 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 97.3 | |
| KOG0490 | 235 | consensus Transcription factor, contains HOX domai | 97.23 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 97.17 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 96.85 | |
| PF05920 | 40 | Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 | 96.83 | |
| KOG2252 | 558 | consensus CCAAT displacement protein and related h | 96.78 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 96.21 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 96.01 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 95.76 | |
| KOG4661 | 940 | consensus Hsp27-ERE-TATA-binding protein/Scaffold | 95.74 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 95.58 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.45 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.43 | |
| KOG1146 | 1406 | consensus Homeobox protein [General function predi | 95.29 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 95.22 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 95.1 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 93.51 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 92.94 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 92.56 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 92.39 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 92.24 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 91.95 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 91.63 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 90.57 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 90.51 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 87.79 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 87.36 | |
| KOG3623 | 1007 | consensus Homeobox transcription factor SIP1 [Tran | 85.82 | |
| KOG2072 | 988 | consensus Translation initiation factor 3, subunit | 83.54 | |
| PF11569 | 56 | Homez: Homeodomain leucine-zipper encoding, Homez; | 83.1 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 81.79 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 81.57 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 81.09 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=340.57 Aligned_cols=509 Identities=17% Similarity=0.155 Sum_probs=342.6
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCCCChhhhhhhhhhHHHHHhhhhccccCCCCHHHHHHHHh-cCChhHHHHHHHH
Q 000279 512 LDSFRDSLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH-DHESRLLGEIHLA 590 (1729)
Q Consensus 512 l~s~R~~LppfPP~~v~lkrP~ps~Pl~vp~e~vg~LL~VweFL~~F~~~L~LspfTLddf~~AL~-~~ds~LL~eiH~a 590 (1729)
++.+...+-..|+.-+++..|-++.++.||+++|+++|.||+||++|+.+|.|+||+|+|||+||. +.++.||+|+|++
T Consensus 159 ~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~ssLlaeVHva 238 (1414)
T KOG1473|consen 159 LDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQSSLLAEVHVA 238 (1414)
T ss_pred CCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCchhHHHHHHHH
Confidence 344444455567777889999999999999999999999999999999999999999999999999 5777899999999
Q ss_pred HHHHHHhChhhhccCCCCCCCCccccCCCCCCCcchhhhhhhccccchhhhhhccCCccHHHHHHHHHHHhCCCCccccc
Q 000279 591 LLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKR 670 (1729)
Q Consensus 591 LLk~ll~d~ed~~~~~s~~~~~~~~~~~~~~~~~~~~~~~a~~wg~~~~~w~~~Ld~lTWpEILRq~l~a~G~g~~~~~~ 670 (1729)
|||+|+++++ +++++||+.. .+|+++ +-..+||+||||||||||+.|.|+-..-
T Consensus 239 LLrA~lr~eD----~~~Thfs~~d--~Kdsvn-----------------I~l~liD~lTWPevLrqY~ea~~~ad~~--- 292 (1414)
T KOG1473|consen 239 LLRALLREED----RLSTHFSPLD--SKDSVN-----------------IDLYLIDTLTWPEVLRQYFEADKHADGP--- 292 (1414)
T ss_pred HHHHHhhhhh----hcccccCccc--ccccee-----------------eeeehhccccHHHHHHHHHHhccccCcc---
Confidence 9999999855 3456898843 444433 2236799999999999999999742110
Q ss_pred cccccCCCCCCCCCCcccchhhhcccchhHHHHHHHHHhcCCCccccccccCccchhHHHHHHHhhhcCCCcchhHHHHH
Q 000279 671 SSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADK 750 (1729)
Q Consensus 671 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~m~~~g~~~~~~~~~rl~pgTvk~a~f~vls~~g~~gl~v~ela~~ 750 (1729)
T Consensus 293 -------------------------------------------------------------------------------- 292 (1414)
T KOG1473|consen 293 -------------------------------------------------------------------------------- 292 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCCCCchhhHHHhhcccccchhccCCCcccccCCccCChhhHHHHHHHHHHHHHhhccCCCCCCCCCcccc
Q 000279 751 IQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVER 830 (1729)
Q Consensus 751 iqk~glrd~~ts~t~ea~i~~alsrd~~Lfer~apsty~~r~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~ 830 (1729)
||--++| |
T Consensus 293 ----------------------------v~~~~n~--------f------------------------------------ 300 (1414)
T KOG1473|consen 293 ----------------------------VWDIFNP--------F------------------------------------ 300 (1414)
T ss_pred ----------------------------hhhhhcc--------c------------------------------------
Confidence 0100100 0
Q ss_pred cccccCCCCCCccccccCCCCCCCcccccccccccccccCCCCcccccccccccccccCCCccCCCCCccccccCccccc
Q 000279 831 DEDSECDVEEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFSSFSLNDSKDARCQGTADNY 910 (1729)
Q Consensus 831 ~~d~~~~~~~d~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1729)
T Consensus 301 -------------------------------------------------------------------------------- 300 (1414)
T KOG1473|consen 301 -------------------------------------------------------------------------------- 300 (1414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhccccCCcccchhcccCCCchhhHhhcccccccCCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 000279 911 VAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMW 990 (1729)
Q Consensus 911 ~~~~~~~~~~~~~~~~eides~~Ge~wl~~L~e~eY~dLsveeRL~aL~aLcdl~Let~sIR~~LEerlE~a~aLkKq~r 990 (1729)
+.+.+|...+|.-||+||+||||++|+++++|..|...-+..
T Consensus 301 ------------------------------v~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~-------- 342 (1414)
T KOG1473|consen 301 ------------------------------VVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIE-------- 342 (1414)
T ss_pred ------------------------------cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccccee--------
Confidence 114467778999999999999999999999999987541100
Q ss_pred HHHHHHHHHhHHHhhhcccCCcccCcchhhhhcccccCCCCCCCcccc------CCCCCCCCCcccCcccccCccccccC
Q 000279 991 AEAQLDKSRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFV------DNKNEASPSLAEDQKPMFGSQVFQNH 1064 (1729)
Q Consensus 991 ~ea~edkrR~keE~~~k~~~~~~~~~K~e~~~~~~~~e~~~sp~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~ 1064 (1729)
-...-+...+.....+.+++....+.|+.-.|..++. ..++-+...+.+++..+.+++
T Consensus 343 -----------~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~----- 406 (1414)
T KOG1473|consen 343 -----------YDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKN----- 406 (1414)
T ss_pred -----------ecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhc-----
Confidence 0001122223355677777777666665544433321 111222222222222222211
Q ss_pred CCCCccccccccCCCCCCcchhhhhhhhhhhHhhHHHHHHHHHHHHHHhhccccccCCccCCCCceeecccCCCCCCCCC
Q 000279 1065 LSEFPNERTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPCS 1144 (1729)
Q Consensus 1065 ~~~~~~E~~~~~qd~~~~~~~~~~~~~~~~aek~~~Qlk~~i~~~~ee~~~~R~~pLGkDR~~NRYW~F~~s~s~~dp~~ 1144 (1729)
...+|..|+|.||+.+.||+. .
T Consensus 407 ------------------------------------------------~~~iR~~~iG~dr~gr~ywfi----------~ 428 (1414)
T KOG1473|consen 407 ------------------------------------------------VDSIRHTPIGRDRYGRKYWFI----------S 428 (1414)
T ss_pred ------------------------------------------------ccceeccCCCcCccccchhce----------e
Confidence 133599999999999988887 6
Q ss_pred CceEEEccCC--cEEEEcCHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHHHHhhccCccccC---------Cchhh
Q 000279 1145 GRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRNLQGIDTVG---------QSWTA 1213 (1729)
Q Consensus 1145 grIfVE~~DG--~W~yYdt~eeld~Ll~~Ld~rG~RE~~L~~~L~~~~~~I~~~M~~r~~~~~~~~---------~~~~~ 1213 (1729)
.||+||..|+ .| ||+|.-+|-.||..||.-=+ |..|...|-...+.|..+|.-.+..++... ++..+
T Consensus 429 rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~~~-e~~L~d~i~~~~ee~~rqM~lT~~ltne~R~~~~f~~~~h~r~~ 506 (1414)
T KOG1473|consen 429 RRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRTYV-EMYLCDGIWERREEIIRQMGLTEELTNELRGAVDFGEDPHGRLF 506 (1414)
T ss_pred eeeEEecCCCcEEE-EecCcHHHHHHHHHhchHHH-HHhhccchhhhHHHHHHhccchhhhhhhhhcccccccCCCccee
Confidence 7999999999 56 99999999999999985555 999999999999999999998876666555 22221
Q ss_pred hh-----------hhcccccCCCCCCCCCCCCCCccCCCCCcccc--ccchhhhcccchHHHHHHHHhhhhHHHHHHhhh
Q 000279 1214 IK-----------NEAAEMDVDPDFASSDSPSSTVCGLNSDTLET--SSSFRIELGRNEIEKKAALERFQDFQWWMWREC 1280 (1729)
Q Consensus 1214 ~~-----------~~~~~~~~~~~~~~~~sp~s~~~~~~~d~~~~--s~s~~iE~g~~~~e~~~~~~r~~~f~~w~w~~~ 1280 (1729)
+- |..-..+. +-+.+..+. +...+ |++..-| .-.|...+..+|++-. --+..
T Consensus 507 l~~~c~~~lv~~iq~~~da~l---------~e~~l~~i~-k~v~~~~S~s~~~e---E~~e~ck~is~~~d~p--~~n~~ 571 (1414)
T KOG1473|consen 507 LGRDCAVLLVLCIQVVEDAIL---------KEENLGDID-KVVLVLISASAHQE---EYVEICKAISQYWDLP--EGNLW 571 (1414)
T ss_pred eecchhhHHhhhhhhhhhhhh---------hHhhhcchH-hhhhhhhhcccchH---HHHHHHHHHhhccccc--ccchh
Confidence 10 00000000 000000000 01011 1111111 1334566777777665 22222
Q ss_pred ccccchhhhhccccccccccccccccccccCccCCCCCccccccc---cCCCcccccchhhhhhhhhccCCcccccCCCc
Q 000279 1281 FNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFG---AVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSS 1357 (1729)
Q Consensus 1281 ~~~~~l~a~k~Gkk~~~~~l~~C~~C~~~y~~~e~hC~~CH~tf~---~~d~e~~~~~h~~~c~~k~~~~~~~~~~~~~~ 1357 (1729)
+.+. -.+.++++.| .+.+++.-.....+.+...+.-|...+ ..++.++++..+. ....
T Consensus 572 ~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~~~tkf~l~~nsd~~~~g~~~---------------t~gt 632 (1414)
T KOG1473|consen 572 RLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSHMQTKFALITNSDGVTAGNVT---------------TYGT 632 (1414)
T ss_pred hhhh--cccccchhhh--cccCCchhhccCCchhhhcccccccceecccccccceeccccc---------------cccc
Confidence 2222 4456666666 667778777788888888888888764 1123333332111 0011
Q ss_pred chHHHHHHHHHHHHHHhcCChhHHhhhhchhHHHHHHhhhccCCCHHHHHHHHHHHHhhhhhhccccccc
Q 000279 1358 LPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFE 1427 (1729)
Q Consensus 1358 lp~~l~~LK~~l~~iEa~lp~eAl~~~W~~~~rk~W~~~l~~ass~~el~q~l~~le~~ik~d~L~~~~~ 1427 (1729)
-.....++...|...++.+|...++..|-.- -|.|-..|..|-++.+|.-.|-.+.-+++-.-..+.||
T Consensus 633 ~~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~~~~~~~~~ss 701 (1414)
T KOG1473|consen 633 GSQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSKRSNAFKAASS 701 (1414)
T ss_pred hhhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhhhhhhhccchh
Confidence 1224567778889999999999999999876 99999999999999999999999999999888888777
|
|
| >KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0485 consensus Transcription factor NKX-5 | Back alignment and domain information |
|---|
| >KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2251 consensus Homeobox transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >PF00046 Homeobox: Homeobox domain not present here | Back alignment and domain information |
|---|
| >KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class | Back alignment and domain information |
|---|
| >KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >smart00389 HOX Homeodomain | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner | Back alignment and domain information |
|---|
| >COG5576 Homeodomain-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0847 consensus Transcription factor, contains HOX domain [Transcription] | Back alignment and domain information |
|---|
| >KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] | Back alignment and domain information |
|---|
| >KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1146 consensus Homeobox protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG3623 consensus Homeobox transcription factor SIP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1729 | ||||
| 3a01_B | 67 | Crystal Structure Of Aristaless And Clawless Homeod | 5e-06 | ||
| 3a02_A | 60 | Crystal Structure Of Aristaless Homeodomain Length | 5e-06 | ||
| 3lnq_A | 58 | Structure Of Aristaless Homeodomain In Complex With | 8e-06 |
| >pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67 | Back alignment and structure |
|
| >pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60 | Back alignment and structure |
| >pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.5 bits (234), Expect = 2e-19
Identities = 103/651 (15%), Positives = 193/651 (29%), Gaps = 189/651 (29%)
Query: 1034 LPVFVDN--KNEASPSLAEDQKPMFGSQVFQNHLSEFPN--ERTVAVQDPSTGLDNLATQ 1089
L VF D N + + K + + +H+ + T+ + L ++
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRL------FWTLLSK 74
Query: 1090 QHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASRNDPC-SGRIF 1148
Q ++ ++ + Y + P+ + P R++
Sbjct: 75 Q--------EEMVQKFVEEVLRINYKFLMSPI-----KTEQ---------RQPSMMTRMY 112
Query: 1149 VELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRN--LQGIDT 1206
+E D RL + + F S R LR L ++ + +N + G+
Sbjct: 113 IEQRD---RLYNDNQVFAKYNVS---RLQPYLKLRQALLEL------RPAKNVLIDGVLG 160
Query: 1207 VGQSWTAI---KNEAAEMDVDP-----DFASSDSPSSTVCGLNS--------DTLETSSS 1250
G++W A+ + + +D + + +SP + + L T + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 1251 FRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSY 1310
I+L + I +A L R + + C LLV+ +V
Sbjct: 221 SNIKLRIHSI--QAELRRL--LKSKPYENC------------------LLVLLNVQ---- 254
Query: 1311 LCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSA 1370
+A + + A + + C K L R V+D L L
Sbjct: 255 ---NA------KAWNAFN---------LSC--KILLTTRFKQVTDF-LSAATTTHISLDH 293
Query: 1371 VIEAYIPPEALE--ASWTDERRKTWGMKLNMSSSA--EEVLQ----LLTI----LESGIK 1418
P E + L+ EVL L+I + G+
Sbjct: 294 HSMTLTPDEVKSLLLKY-----------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 1419 RS--YLSSNFETTKELLGSSFTCADP-------WSVPILP---WIPKTTAAVALRLLELD 1466
+ N + ++ SS +P + + P IP L L+ D
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIWFD 398
Query: 1467 ASIMYVKPEKPEQFEE--------DKEANERV--IPSRYLPLKNKEVVLKELDQDRLVKE 1516
V +K+ E IPS YL LK K L + +V
Sbjct: 399 -----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIV-- 450
Query: 1517 ENYSNLAGKRKNYRRGKGNRD-----H-GWSRKYHKKTPSITADVGRRTAR-EHEGLNLR 1569
++Y N+ + D H G +H K + R L+ R
Sbjct: 451 DHY-NIPKTFDSDDLIPPYLDQYFYSHIG----HHLK----NIEHPERMTLFRMVFLDFR 501
Query: 1570 LKQQGLRTNGRGRRTVRKRADRTSKNETFQGQMGHMVIPDSSSGLHRNLDE 1620
+Q +R + + + + ++ I D+ R ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
| >2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 | Back alignment and structure |
|---|
| >1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 | Back alignment and structure |
|---|
| >2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 | Back alignment and structure |
|---|
| >3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
| >2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
| >1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 | Back alignment and structure |
|---|
| >2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 | Back alignment and structure |
|---|
| >3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 | Back alignment and structure |
|---|
| >1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 | Back alignment and structure |
|---|
| >1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 | Back alignment and structure |
|---|
| >1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77 | Back alignment and structure |
|---|
| >2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73 | Back alignment and structure |
|---|
| >2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 | Back alignment and structure |
|---|
| >2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88 | Back alignment and structure |
|---|
| >2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 | Back alignment and structure |
|---|
| >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 | Back alignment and structure |
|---|
| >2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 | Back alignment and structure |
|---|
| >2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 | Back alignment and structure |
|---|
| >1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 | Back alignment and structure |
|---|
| >2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 | Back alignment and structure |
|---|
| >2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 | Back alignment and structure |
|---|
| >2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 | Back alignment and structure |
|---|
| >1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 | Back alignment and structure |
|---|
| >1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81 | Back alignment and structure |
|---|
| >1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68 | Back alignment and structure |
|---|
| >1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
| >2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 | Back alignment and structure |
|---|
| >3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 | Back alignment and structure |
|---|
| >2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 | Back alignment and structure |
|---|
| >1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 | Back alignment and structure |
|---|
| >2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
| >2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 | Back alignment and structure |
|---|
| >1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 | Back alignment and structure |
|---|
| >3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A* Length = 239 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E* Length = 143 | Back alignment and structure |
|---|
| >3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus} Length = 526 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1729 | ||||
| d1pufa_ | 77 | a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m | 3e-15 | |
| d9anta_ | 56 | a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila | 1e-14 | |
| d2craa1 | 58 | a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( | 3e-14 | |
| d2cuea1 | 68 | a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H | 1e-13 | |
| d2e1oa1 | 57 | a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo | 2e-13 | |
| d1au7a1 | 58 | a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra | 3e-13 | |
| d1x2ma1 | 52 | a.4.1.1 (A:8-59) Lag1 longevity assurance homolog | 1e-12 | |
| d1b72a_ | 88 | a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo | 4e-12 | |
| d1yz8p1 | 60 | a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo | 4e-12 | |
| d1jgga_ | 57 | a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( | 6e-12 | |
| d1uhsa_ | 72 | a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse | 6e-12 | |
| d1bw5a_ | 66 | a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { | 7e-12 | |
| d1fjla_ | 65 | a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila | 8e-12 | |
| d1ocpa_ | 67 | a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus | 1e-11 | |
| d1ftta_ | 68 | a.4.1.1 (A:) Thyroid transcription factor 1 homeod | 2e-11 | |
| d1zq3p1 | 67 | a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl | 2e-11 | |
| d1ig7a_ | 58 | a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu | 4e-11 | |
| d2cqxa1 | 59 | a.4.1.1 (A:8-66) LAG1 longevity assurance homolog | 4e-11 | |
| d1s7ea1 | 50 | a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M | 6e-11 | |
| d1wh7a_ | 80 | a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha | 7e-11 | |
| d1vnda_ | 77 | a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi | 8e-11 | |
| d1e3oc1 | 57 | a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( | 8e-11 | |
| d2ecba1 | 76 | a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote | 1e-10 | |
| d1p7ia_ | 53 | a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel | 1e-10 | |
| d1k61a_ | 60 | a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast | 1e-10 | |
| d1le8a_ | 53 | a.4.1.1 (A:) Mating type protein A1 Homeodomain {B | 2e-10 | |
| d2cufa1 | 82 | a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM | 4e-10 | |
| d1x2na1 | 62 | a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H | 5e-10 | |
| d1pufb_ | 73 | a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 | 7e-10 | |
| d1wi3a_ | 71 | a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom | 1e-09 | |
| d1lfba_ | 78 | a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN | 1e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 9e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 3e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 6e-05 | |
| d2ecca1 | 76 | a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H | 5e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 9e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 5e-07 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 8e-07 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 1e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 8e-05 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.003 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.9 bits (171), Expect = 3e-15
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 20 NNNNNHSNEGQQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMW 79
NN + + + KR T Q LEK + Y + R E++ L L++RQ+++W
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 80 FCHRRLKDKKEKENPPK 96
F +RR+K KK ++ K
Sbjct: 61 FQNRRMKMKKINKDRAK 77
|
| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 | Back information, alignment and structure |
|---|
| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 | Back information, alignment and structure |
|---|
| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 | Back information, alignment and structure |
|---|
| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 | Back information, alignment and structure |
|---|
| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 | Back information, alignment and structure |
|---|
| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 | Back information, alignment and structure |
|---|
| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 | Back information, alignment and structure |
|---|
| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 | Back information, alignment and structure |
|---|
| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 | Back information, alignment and structure |
|---|
| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 | Back information, alignment and structure |
|---|
| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 | Back information, alignment and structure |
|---|
| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 | Back information, alignment and structure |
|---|
| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 | Back information, alignment and structure |
|---|
| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 | Back information, alignment and structure |
|---|
| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 | Back information, alignment and structure |
|---|
| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 | Back information, alignment and structure |
|---|
| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 | Back information, alignment and structure |
|---|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 | Back information, alignment and structure |
|---|
| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 | Back information, alignment and structure |
|---|
| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 | Back information, alignment and structure |
|---|
| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 | Back information, alignment and structure |
|---|
| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 | Back information, alignment and structure |
|---|
| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 | Back information, alignment and structure |
|---|
| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
| >d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1729 | |||
| d1pufa_ | 77 | Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax | 99.44 | |
| d1vnda_ | 77 | VND/NK-2 protein {Fruit fly (Drosophila melanogast | 99.42 | |
| d2craa1 | 58 | Homeobox protein hox-b13 {Human (Homo sapiens) [Ta | 99.42 | |
| d1b72a_ | 88 | Homeobox protein hox-b1 {Human (Homo sapiens) [Tax | 99.42 | |
| d1zq3p1 | 67 | Homeotic bicoid protein {Fruit fly (Drosophila mel | 99.41 | |
| d1ftta_ | 68 | Thyroid transcription factor 1 homeodomain {Rat (R | 99.4 | |
| d1ig7a_ | 58 | Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 | 99.39 | |
| d1uhsa_ | 72 | Homeodomain-only protein, Hop {Mouse (Mus musculus | 99.36 | |
| d1jgga_ | 57 | Even-skipped homeodomain {Fruit fly (Drosophila me | 99.36 | |
| d2cuea1 | 68 | Paired box protein pax6 {Human (Homo sapiens) [Tax | 99.35 | |
| d1fjla_ | 65 | Paired protein {Fruit fly (Drosophila melanogaster | 99.35 | |
| d2e1oa1 | 57 | Homeobox protein prh {Human (Homo sapiens) [TaxId: | 99.35 | |
| d9anta_ | 56 | Antennapedia Homeodomain {Drosophila melanogaster | 99.35 | |
| d2cufa1 | 82 | Homeobox-containing protein 1, HMBOX1 (Flj21616) { | 99.31 | |
| d1p7ia_ | 53 | Engrailed Homeodomain {Drosophila melanogaster [Ta | 99.31 | |
| d1ocpa_ | 67 | Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId | 99.29 | |
| d1bw5a_ | 66 | Insulin gene enhancer protein isl-1 {Rat (Rattus n | 99.29 | |
| d1wh7a_ | 80 | ZF-HD homeobox protein At4g24660 {Thale cress (Ara | 99.28 | |
| d1wi3a_ | 71 | DNA-binding protein SATB2 {Human (Homo sapiens) [T | 99.26 | |
| d1yz8p1 | 60 | Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: | 99.25 | |
| d1au7a1 | 58 | Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta | 99.23 | |
| d1e3oc1 | 57 | Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId | 99.15 | |
| d1le8a_ | 53 | Mating type protein A1 Homeodomain {Baker's yeast | 99.15 | |
| d2ecba1 | 76 | Zinc fingers and homeoboxes protein 1, ZHX1 {Human | 99.14 | |
| d2ecca1 | 76 | Homeobox-leucine zipper protein Homez {Human (Homo | 99.12 | |
| d1pufb_ | 73 | pbx1 {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1lfba_ | 78 | Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat | 99.04 | |
| d1s7ea1 | 50 | Hepatocyte nuclear factor 6 {Mouse (Mus musculus) | 99.01 | |
| d1x2ma1 | 52 | Lag1 longevity assurance homolog 6, LASS6 {Mouse ( | 98.85 | |
| d2cqxa1 | 59 | LAG1 longevity assurance homolog 5, LASS5 {Mouse ( | 98.8 | |
| d1k61a_ | 60 | mat alpha2 Homeodomain {Baker's yeast (Saccharomyc | 98.76 | |
| d1x2na1 | 62 | Homeobox protein pknox1 {Human (Homo sapiens) [Tax | 98.73 |
| >d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: Homeodomain domain: Homeobox protein hox-a9 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=3.8e-14 Score=116.11 Aligned_cols=63 Identities=33% Similarity=0.504 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHCCC
Q ss_conf 999999875897899999997842499998999999999299966511114531022111014
Q 000279 30 QQGKPKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKKEKE 92 (1729)
Q Consensus 30 ~k~Kr~Rt~fT~~Ql~~Le~~F~~~~yPs~~~R~eLA~~lgLserqVqVWFQNRRaK~RR~~~ 92 (1729)
+..|++||+||..|+.+|+..|..++||+...+..||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~ 73 (77)
T d1pufa_ 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 767989988899999999999987799999999999998098877801002546788998878
|
| >d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
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| >d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
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| >d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
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| >d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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