Citrus Sinensis ID: 000283
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1724 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGH2 | 2176 | Methyl-CpG-binding domain | yes | no | 0.930 | 0.737 | 0.407 | 0.0 | |
| Q6IQX0 | 1503 | Lysine-specific demethyla | yes | no | 0.031 | 0.035 | 0.592 | 1e-13 | |
| Q5F3R2 | 1522 | Lysine-specific demethyla | yes | no | 0.042 | 0.048 | 0.459 | 2e-13 | |
| Q80Y84 | 1544 | Lysine-specific demethyla | no | no | 0.038 | 0.042 | 0.493 | 4e-13 | |
| Q96T23 | 1441 | Remodeling and spacing fa | yes | no | 0.028 | 0.034 | 0.571 | 5e-13 | |
| Q9UGL1 | 1544 | Lysine-specific demethyla | no | no | 0.038 | 0.043 | 0.472 | 7e-13 | |
| P29375 | 1690 | Lysine-specific demethyla | no | no | 0.031 | 0.031 | 0.518 | 4e-12 | |
| Q3UXZ9 | 1690 | Lysine-specific demethyla | no | no | 0.031 | 0.031 | 0.518 | 5e-12 | |
| Q30DN6 | 1545 | Lysine-specific demethyla | no | no | 0.031 | 0.035 | 0.490 | 7e-12 | |
| Q22516 | 1787 | Chromodomain-helicase-DNA | yes | no | 0.040 | 0.038 | 0.423 | 1e-11 |
| >sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 724/1777 (40%), Positives = 1028/1777 (57%), Gaps = 172/1777 (9%)
Query: 1 MILSDDSPPHLGNDNLSDFGIDREQACKSQTINETKSDCLSKIAGRPTSDY-IVLDDD-- 57
++LS+ PP LG+D LS RE++ S+T+N +S+ S R D + D D
Sbjct: 515 ILLSEHCPP-LGDDILSCL---REKSF-SKTVNSLRSEVDS---SRVDFDKNLSYDQDHG 566
Query: 58 --IGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEE 115
IG+ +VE S + W+ VSQ LV AC + +Q G F C+H V + S E
Sbjct: 567 VEIGDIVVEEDSLSDAWKKVSQKLVDACSIVLKQKGTLNFLCKH-VDRETSEINWDTMNE 625
Query: 116 ATESSDSLSKFCCLSGPVNIPHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQL 175
SLSKFCC P ++ + E AL +WLDQ+RFGLD +FVQE++E +
Sbjct: 626 KDNVILSLSKFCCSLAPCSVTCGEKDKSEFAAVVDALSRWLDQNRFGLDADFVQEMIEHM 685
Query: 176 PRVRVCAEYTFLDKRRDWSTSQTVRSGFLRVRRKSNTYEKAADRHVFEGCQRPRGQVLE- 234
P C Y L R S TV G L V+ K E D E ++ + L
Sbjct: 686 PGAESCTNYRTLKSRSSSSVPITVAEGALVVKPKGG--ENVKDEVFGEISRKAKKPKLNG 743
Query: 235 -NPVMKSYFPPGKPLSSKLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEEL---- 289
+ V + PPG+P+ +LP L+GD +Q E+ WRF E+LG EE S + LE+EL
Sbjct: 744 GHGVRNLHPPPGRPMCLRLPPGLVGDFLQVSEVFWRFHEILGFEEAFSPENLEQELINPV 803
Query: 290 --------------RNGSAFTLRSSSTS---TVAQEIGQAFIAEEMES--LRE-----AA 325
R+ FT + S+ + ++ E Q F A+ + L+E ++
Sbjct: 804 FDGLFLDKPGKDDKRSEINFTDKDSTATKLFSLFDESRQPFPAKNTSASELKEKKAGDSS 863
Query: 326 HVRLASNTSSGHANVGLANVLCSLLILLLGELQSKVAVLGDTSFDGTESKSRRRRKKDAE 385
+++ ++ L SLL +L+ ELQSKVA D +FD ES+SRR RKKD +
Sbjct: 864 DFKISDSSRGSCVGALLTRAHISLLQVLICELQSKVAAFVDPNFDSGESRSRRGRKKD-D 922
Query: 386 NLMFAKKIMLDLLPVNVLTWPELARRYLLTVSSIEGNLDTVDFLNHESCKALNCFQGDSG 445
+ + AK+ L +LPVN TWPELARRY+L++ S++GNL++ + ES K C QGD G
Sbjct: 923 STLSAKRNKLHMLPVNEFTWPELARRYILSLLSMDGNLESAEIAARESGKVFRCLQGDGG 982
Query: 446 TIRSSRPGVAGMEADALLLAEATKRIFGSLKNTSGPLSVHYNDSDAVGAHETVKVNNSGI 505
+ S GVAGMEAD++LLAEA K+I GSL + + LSV +DSD + A ET + I
Sbjct: 983 LLCGSLTGVAGMEADSMLLAEAIKKISGSLTSENDVLSVEDDDSDGLDATET-NTCSGDI 1041
Query: 506 PGWAQVLEPVRKLPTNVGARIRKCIYDALDKDPPEWARKRLEHSISKEVYKGNASGPTKK 565
P WAQVLEPV+KLPTNVG RIRKC+Y+AL+++PPEWA+K LEHSISKE+YKGNASGPTKK
Sbjct: 1042 PEWAQVLEPVKKLPTNVGTRIRKCVYEALERNPPEWAKKILEHSISKEIYKGNASGPTKK 1101
Query: 566 AVLSVLADVCGEDQPQKPTRKRKNRCFTSVPDVIMKQCRKVLRCAAAADEERVFCNLLGR 625
AVLS+LAD+ G D Q+ + K R + SV DVIMK+CR VLR AAADE++V C LLGR
Sbjct: 1102 AVLSLLADIRGGDLVQRSIKGTKKRTYISVSDVIMKKCRAVLRGVAAADEDKVLCTLLGR 1161
Query: 626 TLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVWHHICTAY 685
LLN+SDNDD+GLLG PAMVSRPLDFRTIDLRLA GAY GS EAFLEDV E+W I Y
Sbjct: 1162 KLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLRLAAGAYDGSTEAFLEDVLELWSSIRVMY 1221
Query: 686 SDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKFADYPSLECLNSEAKKEMEDILESASEIP 745
+DQ D + L L + F+ LY+ EV+ LVQK DY LECL++E KKE++DI+ S +++P
Sbjct: 1222 ADQPDCVDLVATLSEKFKSLYEAEVVPLVQKLKDYRKLECLSAEMKKEIKDIVVSVNKLP 1281
Query: 746 KAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPCLSGNCKN 805
KAPWDEGVCKVCG+DKDDD+VLLCDTCD+ YHTYCL PPL R+P+GNWYCP C+
Sbjct: 1282 KAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSCVIA---- 1337
Query: 806 KYMSQVPHVSSRIPKRR----HQGEFTCRILEEVFHLAATMEMRDYWDYSDKERIFLLKF 861
K M+Q S ++ +RR +QGE T +E HLA ME +DYW++S +ERI LLK
Sbjct: 1338 KRMAQEALESYKLVRRRKGRKYQGELTRASMELTAHLADVMEEKDYWEFSAEERILLLKL 1397
Query: 862 LCDELLNSTNIREHLERCASVSVDLQQKIRSLSLEWRNLKFREEILAGKVARDKASVLSG 921
LCDELL+S+ + +HLE+CA +++QQK+RSLS EW+N K R+E L K+A+ + S+L
Sbjct: 1398 LCDELLSSSLVHQHLEQCAEAIIEMQQKLRSLSSEWKNAKMRQEFLTAKLAKVEPSILKE 1457
Query: 922 TGKCGTEGVATLYPHYGKLMRQPSGGGGYFSSFASDLALSEDGLQLNESRKLSFWFNSKG 981
G+ ++ + QP G G DG+ ++ + + N
Sbjct: 1458 VGEPHN---SSYFADQMGCDPQPQEGVG-------------DGVTRDDETSSTAYLNKN- 1500
Query: 982 ISMRQPSCSRNQIGEA--PYTESQVHQESEKDNIRVDDLQYDVPHSASQPQKQDTAGEYA 1039
+ P + Q GE+ + ES++ S + I ++++P + + P D E
Sbjct: 1501 -QGKSPLETDTQPGESHVNFGESKI---SSPETISSPG-RHELPIADTSPLVTDNLPEKD 1555
Query: 1040 TWRNKGQDLENGHTSGPLQPNCEASQSHFSSDHTNGNQVAEHLCVMPINPENIVPGHHSI 1099
T + + H + PN A + + H +Q ++ L
Sbjct: 1556 TSETLLKSVGRNHETH--SPNSNAVE--LPTAHDASSQASQEL---------------QA 1596
Query: 1100 VQHDMNEPHAHDLKGSVLKNEIAVLQDSIAGLESQQLAVSLRKELLGRDSAGRLYWAFFR 1159
Q D+ S NEI LQ SI +ESQ L S+R++ LG D++GRLYW
Sbjct: 1597 CQQDL----------SATSNEIQNLQQSIRSIESQLLKQSIRRDFLGTDASGRLYWGCCF 1646
Query: 1160 PNTSPWLLVDGTTVLEQERILKEHGDSLANSPFEEEYN-GISTSSSWFSYQSDTEIEELI 1218
P+ +P +LVDG+ L Q+ + + S SPF + G S W Y+++TEI EL+
Sbjct: 1647 PDENPRILVDGSISL-QKPVQADLIGSKVPSPFLHTVDHGRLRLSPWTYYETETEISELV 1705
Query: 1219 QWLSDSDPRDKELAESILRWTKIGYKDLKIAGNHIEDESVPSSSKRRKSEATVKSSGLVT 1278
QWL D D ++++L ESIL W ++ Y D++ ++ S P V ++GL T
Sbjct: 1706 QWLHDDDLKERDLRESILWWKRLRYGDVQKEKKQAQNLSAP-----------VFATGLET 1754
Query: 1279 KALTVLEEKHGPC--LEPEVLKMSMKLDTNSELTCKERMYRCECLEPVLPTRFHCRRCHL 1336
KA +E+++GPC LE E LK K +++ +E++ RCECLE +LP+ HC CH
Sbjct: 1755 KAAMSMEKRYGPCIKLEMETLK---KRGKKTKVAEREKLCRCECLESILPSMIHCLICHK 1811
Query: 1337 SFSARNELEEHNDAKCILSATSSQNSKEDDERTKGAGTIRTETLQAECMETAGKGMSQSL 1396
+F++ +E E+H ++KCI + +++ K+ + +K +++++ L + +AGK +++ +
Sbjct: 1812 TFASDDEFEDHTESKCIPYSLATEEGKDISDSSKAKESLKSDYLNVK--SSAGKDVAE-I 1868
Query: 1397 KHGTAMGSFEI---PKEFACPFNFEEISTKFITKNSIKELVQEIGLIGSNGVPAFVPSTS 1453
+ + + S I +E P++FEEI +KF+TK+ ++LV+EIGLI SNG+P F+PS+S
Sbjct: 1869 SNVSELDSGLIRYQEEESISPYHFEEICSKFVTKDCNRDLVKEIGLISSNGIPTFLPSSS 1928
Query: 1454 PYLCDPSLKLVEMCKNEINRGNKSTNLENLFQYSIAG--DMVSGLEHDNISNNSSRRCTV 1511
+L D L + NK ++ Q AG V GL + SN S R
Sbjct: 1929 THLNDSVLISA--------KSNKPDGGDSGDQVIFAGPETNVEGLNSE--SNMSFDRSVT 1978
Query: 1512 SHNDDDVLKCRRLNPNFMNEKRDQSFNLRSLKPGIGNSSIVRDTSLMPLMGRGIEILRQL 1571
+ + K L F +K N +S G+ + +V +L + G+ + R L
Sbjct: 1979 DSHGGPLDKPSGLGFGFSEQK-----NKKSSGSGLKSCCVVPQAALKRVTGKALPGFRFL 2033
Query: 1572 KINLLDMDAAVPEEALRSSKACWEKRSAWRAFVKSAKSIFEMVQATIVFEDMIKTDYLRN 1631
K NLLDMD A+PEEALR SK+ +R AWR FVKS++SI+E+VQATIV EDMIKT+YL+N
Sbjct: 2034 KTNLLDMDVALPEEALRPSKSHPNRRRAWRVFVKSSQSIYELVQATIVVEDMIKTEYLKN 2093
Query: 1632 GWWYWSSLSGAANIATVSALALRLYTLDAAIVYEK---HSDSI-EIQEHISQPDKETSPC 1687
WWYWSSLS AA I+T+SAL++R+++LDAAI+Y+K S+ I E + IS PD+++ P
Sbjct: 2094 EWWYWSSLSAAAKISTLSALSVRIFSLDAAIIYDKPITPSNPIDETKPIISLPDQKSQPV 2153
Query: 1688 KDSKSNPKPSKAILKTQSSDLTEFSKTRSKSGKKRKD 1724
DS+ E S +SGKKRK+
Sbjct: 2154 SDSQ------------------ERSSRVRRSGKKRKE 2172
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Probable transcriptional regulator that acts as a histone acetyltranferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 | Back alignment and function description |
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| >sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 | Back alignment and function description |
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| >sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 | Back alignment and function description |
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| >sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1724 | ||||||
| 359473443 | 2060 | PREDICTED: methyl-CpG-binding domain-con | 0.993 | 0.831 | 0.516 | 0.0 | |
| 296086550 | 1789 | unnamed protein product [Vitis vinifera] | 0.919 | 0.886 | 0.475 | 0.0 | |
| 359488845 | 2164 | PREDICTED: methyl-CpG-binding domain-con | 0.889 | 0.708 | 0.467 | 0.0 | |
| 255552612 | 2145 | DNA binding protein, putative [Ricinus c | 0.872 | 0.701 | 0.432 | 0.0 | |
| 255568758 | 1794 | DNA binding protein, putative [Ricinus c | 0.570 | 0.548 | 0.606 | 0.0 | |
| 297832794 | 2183 | methyl-CpG-binding domain 9 [Arabidopsis | 0.929 | 0.734 | 0.409 | 0.0 | |
| 15232121 | 2176 | methyl-CPG-binding domain 9 [Arabidopsis | 0.930 | 0.737 | 0.407 | 0.0 | |
| 413926302 | 1812 | hypothetical protein ZEAMMB73_046571 [Ze | 0.885 | 0.842 | 0.383 | 0.0 | |
| 449520433 | 1277 | PREDICTED: LOW QUALITY PROTEIN: methyl-C | 0.714 | 0.964 | 0.418 | 0.0 | |
| 296087685 | 1907 | unnamed protein product [Vitis vinifera] | 0.513 | 0.464 | 0.491 | 0.0 |
| >gi|359473443|ref|XP_002264500.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1781 (51%), Positives = 1209/1781 (67%), Gaps = 69/1781 (3%)
Query: 1 MILSDDSPPHLGNDNLS--DFGIDREQACKSQTINETKSDC-LSKIAGRPTSDYIVLDDD 57
MI S++ PP+L D LS G++ + ++++ ++T+S+C L + +G+ + ++D+
Sbjct: 292 MIFSENDPPNLDYDVLSCSQNGLNEDCDVQTKSSSQTESNCRLLQSSGKLVLSNLRVEDN 351
Query: 58 IGEFLVEGRSSASVWRMVSQTLVHACRKIYEQTGVCKFRCRHDVFKIWSSYFVSVSEEAT 117
IGEFLVE SS+S W VSQT+VHAC + Y+QTGV +F C+HD+ +IW+ Y +++ +A
Sbjct: 352 IGEFLVEASSSSSAWSKVSQTVVHACCEAYKQTGVLQFCCKHDLDQIWTPY-ATLNADAA 410
Query: 118 ESSDSLSKFCCLSGPVNIPHLIRSNDELETSCKALVKWLDQDRFGLDVEFVQEIVEQLPR 177
S SL+KFC GP+NIP I+++ L+TSC AL+KWLDQDRFGLDVEFVQEI+E LP
Sbjct: 411 ASIGSLAKFCNFCGPINIPCCIQNDSVLDTSCDALIKWLDQDRFGLDVEFVQEIIEHLPG 470
Query: 178 VRVCAEYTFLDKRRDWSTSQTVRSGFLRVRRKSNTYEKAADRHVFEGCQRPRGQVLENPV 237
V C+EY FL++R ST QT RSGFL +RKS ++F+ C+RPR QV+E+PV
Sbjct: 471 VHACSEYEFLNRRTHNSTPQTFRSGFLLAKRKSEVQGGEKAGNLFK-CKRPRKQVVESPV 529
Query: 238 MKSYFPPGKPLSSKLPIELIGDVIQSWELLWRFSEVLGLEEPLSFKELEEELRNGSAFTL 297
++ PPGKPLS LP +LIGDV+Q WE LWRFSEVLGLEEP+SF+ELEEEL + + +L
Sbjct: 530 IRDCCPPGKPLSLTLPADLIGDVLQIWESLWRFSEVLGLEEPISFEELEEELLDCN-LSL 588
Query: 298 RSSSTSTVAQEIGQAFIAEEMESLREAAHVRLASNTSSGHANVGLANVLCSLLILLLGEL 357
S+S S V+ + QA E ES REA+ RLAS+ V L +LL +L+GEL
Sbjct: 589 CSASASGVSGKNAQALNTMETESKREASQARLASHNYGRFIGVALTKAHSALLKVLVGEL 648
Query: 358 QSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLLPVNVLTWPELARRYLLTVS 417
SKVA D +FD ESKSRR RKKDA+NL+ KK+ +D LP+N LTWPELARRY+LT+S
Sbjct: 649 LSKVAAFADPNFDAGESKSRRGRKKDADNLIPVKKMKVDKLPINELTWPELARRYILTIS 708
Query: 418 SIEGNLDTVDFLNHESCKALNCFQGDSGTIRSSRPGVAGMEADALLLAEATKRIFGSLKN 477
S+EG D + + E K C QGD GT+ S GVAGMEADALLLAEAT +IFGS+K+
Sbjct: 709 SLEGKFDCAEINSREGWKVFRCLQGDGGTLCGSLTGVAGMEADALLLAEATIKIFGSVKS 768
Query: 478 TSGPLSVHYNDSDAVGAHETVKVNNSGIPGWAQVLEPVRKLPTNVGARIRKCIYDALDKD 537
+ L + SDAVGA++T ++N+ IP WAQVLEPVRKLPTNVGARIRKC+YDALD D
Sbjct: 769 KNDILRIDCIKSDAVGAYKTAELNDGEIPKWAQVLEPVRKLPTNVGARIRKCVYDALDND 828
Query: 538 PPEWARKRLEHSISKEVYKGNASGPTKKAVLSVLADVCGEDQPQKPTRKRKNRCFTSVPD 597
PPEWA+K L+HSISKEVYKGNASGPTKKAV+++LADV + ++P +KRK + S D
Sbjct: 829 PPEWAKKILKHSISKEVYKGNASGPTKKAVIALLADVHSGNVQRRPDKKRKGKRVRSASD 888
Query: 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLR 657
+IMKQCR VLR A+ D+E+VFCNLLGR +++ +DNDD+GLLGFPAMVSRPLDFRTIDLR
Sbjct: 889 LIMKQCRTVLRRVASTDKEKVFCNLLGR-IMDPNDNDDKGLLGFPAMVSRPLDFRTIDLR 947
Query: 658 LAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKF 717
LA GAYGGS+EAFLEDV+EVWH+IC AY D SD + LA L ++FE LY KEVLTLVQKF
Sbjct: 948 LAVGAYGGSNEAFLEDVQEVWHNICIAYRD-SDDISLAEALSKDFESLYSKEVLTLVQKF 1006
Query: 718 ADYPSLECLNSEAKKEMEDILESASEIPKAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYH 777
Y ++E LN+EAKKE+ED + A EIPKAPWDEG+CKVCG+DKDDDNVLLCD CDS YH
Sbjct: 1007 MSYANVEFLNAEAKKELEDTIACADEIPKAPWDEGLCKVCGVDKDDDNVLLCDACDSEYH 1066
Query: 778 TYCLTPPLTRVPEGNWYCPPCLSGNCKNKYMSQVPHVSSRIPKRRHQGEFTCRILEEVFH 837
TYCL PPL R+PEGNWYCP C++ ++ S+ V SR ++R+QGEFT LE + H
Sbjct: 1067 TYCLNPPLARIPEGNWYCPSCVAAQRLSQGTSRSAEVFSRCRRKRYQGEFTRTYLETLTH 1126
Query: 838 LAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCASVSVDLQQKIRSLSLEW 897
LA ME+++Y + S +ER+FLLKF C+E+LNS IREHLE+CAS+S DLQQK+R+LSLE
Sbjct: 1127 LATIMEIKEYCELSIEERVFLLKFFCEEVLNSAIIREHLEQCASLSADLQQKLRTLSLER 1186
Query: 898 RNLKFREEILAGKVARDKASVLSGTG-KCGTEGVATLYPHYGKLMRQPSGGGGYFSSFAS 956
RNLK REEILA KV + + L G G + GTE VA + +Y KLM QP YF+SF S
Sbjct: 1187 RNLKLREEILAVKVEKANSVGLDGVGGEAGTEAVAMMLKNYSKLMVQPLNKSNYFASFPS 1246
Query: 957 DLALSEDGLQLNESR---KLSFWFNSKGISMRQPSCSRNQIGEAPYTESQV-HQESEKDN 1012
+L EDG Q NE K +WFN+KG + + SR+ + P T+ Q+ +Q KDN
Sbjct: 1247 NLVSLEDGQQENEQNDFNKPPYWFNAKGFLEKHHATSRDLSMKTPDTDDQMKYQHLAKDN 1306
Query: 1013 -------------IRVDDLQY--DVPHSASQPQKQDTAGEYATWRNKGQDLEN--GHTSG 1055
R DD +P Q QK ++ + N LE+ +G
Sbjct: 1307 SVPHENHFSSTPFFRKDDFSSLNKLPLFTPQSQKINSGEGNDSRSNFNSKLESEKDDDNG 1366
Query: 1056 PLQPNCEASQSHFSSDHTNGNQVAEHLCVMPINPENIVPGHHSIVQHDMNEPHAHDLKGS 1115
+ P+ E Q D N ++EH+ M +N EN++ H+ I Q E A++ +
Sbjct: 1367 SVLPS-EILQRGILFDAIRTN-ISEHVHAMHVNSENMLLDHNGIGQPVAIESQAYNQEAD 1424
Query: 1116 VLKNEIAVLQDSIAGLESQQLAVSLRKELLGRDSAGRLYWAFFRPNTSPWLLVDGTTVLE 1175
LKNEI+VLQDSIA LESQ L VS+RKE LG+DSAGRLYW F R TSPW+++DG+ +
Sbjct: 1425 SLKNEISVLQDSIASLESQLLKVSMRKEFLGKDSAGRLYWVFSRAGTSPWVVIDGSMMAG 1484
Query: 1176 -QERILKEHGDSLANSP--------------------------FEEEYNGISTSSSWFSY 1208
+ KEH D+LAN+ ++EY+ I S W S
Sbjct: 1485 LRGGEAKEHEDTLANNSTLRGSFPCGREKKFSSREFNISNRHMHDQEYS-IPMSFPWVSC 1543
Query: 1209 QSDTEIEELIQWLSDSDPRDKELAESILRWTKIGYKDLKIAGNHIEDESVPSSSKRRKSE 1268
QS+ EIEELIQWL D++PR++EL ESIL+W + YKD A ++++DE P+SSK + SE
Sbjct: 1544 QSNDEIEELIQWLRDNEPRERELLESILQWQRTKYKDSNKAKSYVKDEQ-PTSSKTKNSE 1602
Query: 1269 ATVKSSGLVTKALTVLEEKHGPCLEPEVLKMSMKLDTNSELTCKERMYRCECLEPVLPTR 1328
T+ L T+A T+LE+K+GPC+E E + K NS + C++RM+RCECLEP+ P+R
Sbjct: 1603 RTLDY--LKTRAGTILEKKYGPCMELEATDIPKKRCPNSLVRCEQRMHRCECLEPIWPSR 1660
Query: 1329 FHCRRCHLSFSARNELEEHNDAKCILSATSSQNSKEDDERTKGAGTIRTETLQAECMETA 1388
HC CH SFS EL+ H+D C A++S+NS +DE KG + T+ LQ +
Sbjct: 1661 KHCLTCHQSFSTSEELKGHDDRICSSGASASENSMVNDESGKGKMMMNTDALQEHSDDLG 1720
Query: 1389 GKGMSQSLKHGTAMGSFEIPKEFACPFNFEEISTKFITKNSIKELVQEIGLIGSNGVPAF 1448
G S+S KH T G KE CPF+ EEISTKFI K+S KELV+EIGLIGSNG+P+F
Sbjct: 1721 MIGASKSEKHETVSGLINFDKELICPFDIEEISTKFIVKSSNKELVREIGLIGSNGIPSF 1780
Query: 1449 VPSTSPY-LCDPSLKLVEMCKNEINRGNKSTNLENLFQYSIAGDMVSGLEHDNISNNSSR 1507
+P+TSPY L DP+L L+ +NE+N KS +EN Q +M +G+++ + SN+S+R
Sbjct: 1781 LPNTSPYYLNDPTLMLLAR-ENEVNPHKKSLIMENQLQQGPERNMAAGIKYYHPSNDSTR 1839
Query: 1508 RCTVSHNDDDVLKCRRLNPNFMNEKRDQSFNLRSLKPGIGNSSIVRDTSLMPLMGRGIEI 1567
RC++ + L+ +L N +N + S ++ + G+GN I+ ++SL PL G +
Sbjct: 1840 RCSMDGIGEAFLETEKLRLNCINGRDQSSSTNQTSEGGLGNCCIINESSLKPLEGWASQF 1899
Query: 1568 LRQLKINLLDMDAAVPEEALRSSKACWEKRSAWRAFVKSAKSIFEMVQATIVFEDMIKTD 1627
LR+LKI+LLDMDAA+PEEA++ S A E+R AWRAFVKSA SIF+MVQ+TI+ E+MIKT+
Sbjct: 1900 LRKLKIDLLDMDAALPEEAVKPSNASLERRCAWRAFVKSAVSIFQMVQSTIILENMIKTE 1959
Query: 1628 YLRNGWWYWSSLSGAANIATVSALALRLYTLDAAIVYE---KHSDSIEIQEHISQPDKET 1684
YLRNGWWYWSSLS AA I+ +S+LALR+YTLDAAIVY+ S EI++ S+ DK+
Sbjct: 1960 YLRNGWWYWSSLSAAAKISNISSLALRIYTLDAAIVYDGPLPGCSSTEIEKLGSESDKKL 2019
Query: 1685 SPCKDSKSNPKP-SKAILKTQSSDLTEFSKTRSKSGKKRKD 1724
+ SNPK S+ I KT +SD T+ K RSKS KKRKD
Sbjct: 2020 PIYPNPTSNPKSNSRTIQKTSNSDSTDRPKPRSKSSKKRKD 2060
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086550|emb|CBI32139.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359488845|ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255552612|ref|XP_002517349.1| DNA binding protein, putative [Ricinus communis] gi|223543360|gb|EEF44891.1| DNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255568758|ref|XP_002525350.1| DNA binding protein, putative [Ricinus communis] gi|223535313|gb|EEF36988.1| DNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297832794|ref|XP_002884279.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] gi|297330119|gb|EFH60538.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15232121|ref|NP_186795.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] gi|75337201|sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 gi|6692266|gb|AAF24616.1|AC010870_9 unknown protein [Arabidopsis thaliana] gi|332640148|gb|AEE73669.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|413926302|gb|AFW66234.1| hypothetical protein ZEAMMB73_046571 [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|449520433|ref|XP_004167238.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|296087685|emb|CBI34941.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1724 | ||||||
| TAIR|locus:2096672 | 2176 | MBD9 "methyl-CPG-binding domai | 0.325 | 0.257 | 0.584 | 6.7e-290 | |
| UNIPROTKB|F1S4N3 | 1304 | KDM5B "Uncharacterized protein | 0.071 | 0.094 | 0.340 | 3.1e-12 | |
| UNIPROTKB|H0YDG9 | 276 | RSF1 "Remodeling and spacing f | 0.049 | 0.311 | 0.377 | 1.4e-11 | |
| UNIPROTKB|F1MUR2 | 1484 | KDM5B "Uncharacterized protein | 0.071 | 0.082 | 0.333 | 8.2e-11 | |
| UNIPROTKB|B3KV94 | 1275 | JARID1B "cDNA FLJ16281 fis, cl | 0.067 | 0.090 | 0.348 | 1.8e-10 | |
| UNIPROTKB|Q9UGL1 | 1544 | KDM5B "Lysine-specific demethy | 0.067 | 0.075 | 0.348 | 2.3e-10 | |
| UNIPROTKB|Q5F3R2 | 1522 | KDM5B "Lysine-specific demethy | 0.044 | 0.049 | 0.467 | 5.4e-10 | |
| ZFIN|ZDB-GENE-030131-5132 | 405 | dpf2l "D4, zinc and double PHD | 0.033 | 0.143 | 0.516 | 6e-10 | |
| UNIPROTKB|P58268 | 405 | REQ "Zinc finger protein ubi-d | 0.026 | 0.113 | 0.565 | 7.1e-10 | |
| UNIPROTKB|F1PJS3 | 1476 | KDM5B "Uncharacterized protein | 0.071 | 0.083 | 0.348 | 8e-10 |
| TAIR|locus:2096672 MBD9 "methyl-CPG-binding domain 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1721 (610.9 bits), Expect = 6.7e-290, Sum P(3) = 6.7e-290
Identities = 334/571 (58%), Positives = 423/571 (74%)
Query: 358 QSKVAVLGDTSFDGTESKSRRRRKKDAENLMFAKKIMLDLLPVNVLTWPELARRYLLTVS 417
QSKVA D +FD ES+SRR RKKD ++ + AK+ L +LPVN TWPELARRY+L++
Sbjct: 896 QSKVAAFVDPNFDSGESRSRRGRKKD-DSTLSAKRNKLHMLPVNEFTWPELARRYILSLL 954
Query: 418 SIEGNLDTVDFLNHESCKALNCFQGDSGTIRSSRPGVAGMEADALLLAEATKRIFGSLKN 477
S++GNL++ + ES K C QGD G + S GVAGMEAD++LLAEA K+I GSL +
Sbjct: 955 SMDGNLESAEIAARESGKVFRCLQGDGGLLCGSLTGVAGMEADSMLLAEAIKKISGSLTS 1014
Query: 478 TSGPLSVHYNDSDAVGAHETVKVNNSGIPGWAQVLEPVRKLPTNVGARIRKCIYDALDKD 537
+ LSV +DSD + A ET + IP WAQVLEPV+KLPTNVG RIRKC+Y+AL+++
Sbjct: 1015 ENDVLSVEDDDSDGLDATET-NTCSGDIPEWAQVLEPVKKLPTNVGTRIRKCVYEALERN 1073
Query: 538 PPEWARKRLEHSISKEVYKGNASGPTKKAVLSVLADVCGEDQPQKPTRKRKNRCFTSVPD 597
PPEWA+K LEHSISKE+YKGNASGPTKKAVLS+LAD+ G D Q+ + K R + SV D
Sbjct: 1074 PPEWAKKILEHSISKEIYKGNASGPTKKAVLSLLADIRGGDLVQRSIKGTKKRTYISVSD 1133
Query: 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLR 657
VIMK+CR VLR AAADE++V C LLGR LLN+SDNDD+GLLG PAMVSRPLDFRTIDLR
Sbjct: 1134 VIMKKCRAVLRGVAAADEDKVLCTLLGRKLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLR 1193
Query: 658 LAFGAYGGSHEAFLEDVREVWHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLVQKF 717
LA GAY GS EAFLEDV E+W I Y+DQ D + L L + F+ LY+ EV+ LVQK
Sbjct: 1194 LAAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQKL 1253
Query: 718 ADYPSLECLNSEAKKEMEDILESASEIPKAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYH 777
DY LECL++E KKE++DI+ S +++PKAPWDEGVCKVCG+DKDDD+VLLCDTCD+ YH
Sbjct: 1254 KDYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYH 1313
Query: 778 TYCLTPPLTRVPEGNWYCPPCLSGNCKNKYMSQVPHVSSRIPKRR----HQGEFTCRILE 833
TYCL PPL R+P+GNWYCP C+ K M+Q S ++ +RR +QGE T +E
Sbjct: 1314 TYCLNPPLIRIPDGNWYCPSCVIA----KRMAQEALESYKLVRRRKGRKYQGELTRASME 1369
Query: 834 EVFHLAATMEMRDYWDYSDKERIFLLKFLCDELLNSTNIREHLERCASVSVDLQQKIRSL 893
HLA ME +DYW++S +ERI LLK LCDELL+S+ + +HLE+CA +++QQK+RSL
Sbjct: 1370 LTAHLADVMEEKDYWEFSAEERILLLKLLCDELLSSSLVHQHLEQCAEAIIEMQQKLRSL 1429
Query: 894 SLEWRNLKFREEILAGKVARDKASVLSGTGK 924
S EW+N K R+E L K+A+ + S+L G+
Sbjct: 1430 SSEWKNAKMRQEFLTAKLAKVEPSILKEVGE 1460
|
|
| UNIPROTKB|F1S4N3 KDM5B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H0YDG9 RSF1 "Remodeling and spacing factor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MUR2 KDM5B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B3KV94 JARID1B "cDNA FLJ16281 fis, clone NT2RI3003104, highly similar to Homo sapiens Jumonji, AT rich interactive domain 1B (RBP2-like) (JARID1B), mRNA" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-5132 dpf2l "D4, zinc and double PHD fingers family 2, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P58268 REQ "Zinc finger protein ubi-d4" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PJS3 KDM5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | GSVIVG00028835001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (1733 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1724 | |||
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 2e-13 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 1e-11 | |
| cd04718 | 148 | cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol | 2e-05 | |
| pfam05965 | 84 | pfam05965, FYRC, F/Y rich C-terminus | 6e-04 | |
| pfam00439 | 84 | pfam00439, Bromodomain, Bromodomain | 0.003 | |
| cd05500 | 103 | cd05500, Bromo_BDF1_2_I, Bromodomain | 0.003 |
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-13
Identities = 26/48 (54%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 753 VCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTR--VPEGNWYCPPC 798
C VCG DD +LLCD CD +H CL PPL +PEG WYCP C
Sbjct: 1 YCAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48
|
PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51 |
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus | Back alignment and domain information |
|---|
| >gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
| >gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1724 | |||
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.76 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.56 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.55 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.54 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.52 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.51 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.51 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.48 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.48 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.48 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.47 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.47 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.44 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.44 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.44 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.41 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.38 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.36 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.34 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.31 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.28 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.25 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.25 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.25 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.24 | |
| smart00297 | 107 | BROMO bromo domain. | 99.19 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.19 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.17 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.15 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.13 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.11 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.1 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.06 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 98.97 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 98.96 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 98.92 | |
| KOG1244 | 336 | consensus Predicted transcription factor Requiem/N | 98.91 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.7 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 98.64 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 98.38 | |
| KOG4299 | 613 | consensus PHD Zn-finger protein [General function | 98.32 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 98.31 | |
| KOG1246 | 904 | consensus DNA-binding protein jumonji/RBP2/SMCY, c | 98.26 | |
| KOG1512 | 381 | consensus PHD Zn-finger protein [General function | 98.19 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 98.16 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 98.08 | |
| cd04718 | 148 | BAH_plant_2 BAH, or Bromo Adjacent Homology domain | 98.04 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 97.87 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 97.8 | |
| KOG4443 | 694 | consensus Putative transcription factor HALR/MLL3, | 97.66 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 97.65 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 97.65 | |
| KOG1973 | 274 | consensus Chromatin remodeling protein, contains P | 97.51 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 97.5 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 97.45 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 97.34 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.19 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 97.08 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 96.93 | |
| smart00542 | 86 | FYRC "FY-rich" domain, C-terminal region. is somet | 96.89 | |
| PF05965 | 86 | FYRC: F/Y rich C-terminus; InterPro: IPR003889 The | 96.82 | |
| KOG0954 | 893 | consensus PHD finger protein [General function pre | 96.74 | |
| COG5034 | 271 | TNG2 Chromatin remodeling protein, contains PhD zi | 96.66 | |
| KOG4323 | 464 | consensus Polycomb-like PHD Zn-finger protein [Gen | 96.23 | |
| COG5141 | 669 | PHD zinc finger-containing protein [General functi | 96.17 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 95.92 | |
| KOG0956 | 900 | consensus PHD finger protein AF10 [General functio | 95.79 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 95.78 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 95.63 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 95.56 | |
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 95.2 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 93.79 | |
| PF13831 | 36 | PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. | 93.54 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 93.07 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 91.76 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 89.61 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 87.75 | |
| KOG0957 | 707 | consensus PHD finger protein [General function pre | 82.62 |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-19 Score=218.27 Aligned_cols=108 Identities=27% Similarity=0.408 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhcccccCCCCCCCCCCCCCCccccccCCCChhHHHhhhcccccCCChhhhHhhHHHH
Q 000283 598 VIMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREV 677 (1724)
Q Consensus 598 ~ImKrCr~VL~~Ll~s~~s~~F~~pVd~~lLdleD~d~qGLpGYpdIIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLV 677 (1724)
.+|++|..||++|+.+.++|+|++|||...|+|+| |+.||++|||||||+.||..|.|. +++.|++|||+|
T Consensus 222 ~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpD--------Y~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL~ 292 (640)
T KOG1474|consen 222 ELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPD--------YHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRLT 292 (640)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcc--------hhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHHH
Confidence 46999999999999999999999999987776665 999999999999999999999999 666799999999
Q ss_pred HHhhhhhcCCCchHHHHHHHhhhhhHHHHHHhhhhhh
Q 000283 678 WHHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLTLV 714 (1724)
Q Consensus 678 WsN~~tyN~dgSEVv~LAekLSqiFEsrYkKqVL~~v 714 (1724)
|+||++||+.+++|+.||..|+..|+++|+.+.+.+.
T Consensus 293 F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 293 FDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999998776543
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
| >KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4299 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
| >KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1512 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function | Back alignment and domain information |
|---|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
| >KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >smart00542 FYRC "FY-rich" domain, C-terminal region | Back alignment and domain information |
|---|
| >PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant | Back alignment and domain information |
|---|
| >KOG0954 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5141 PHD zinc finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >KOG0956 consensus PHD finger protein AF10 [General function prediction only] | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
| >PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG0957 consensus PHD finger protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1724 | ||||
| 2e6r_A | 92 | Solution Structure Of The Phd Domain In Smcy Protei | 2e-12 | ||
| 1mm2_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-09 | ||
| 1f62_A | 51 | Wstf-Phd Length = 51 | 4e-09 | ||
| 3ask_A | 226 | Structure Of Uhrf1 In Complex With Histone Tail Len | 4e-09 | ||
| 4gy5_A | 241 | Crystal Structure Of The Tandem Tudor Domain And Pl | 5e-09 | ||
| 2kwj_A | 114 | Solution Structures Of The Double Phd Fingers Of Hu | 6e-09 | ||
| 2ysm_A | 111 | Solution Structure Of The First And Second Phd Doma | 1e-08 | ||
| 1mm3_A | 61 | Solution Structure Of The 2nd Phd Domain From Mi2b | 2e-08 | ||
| 3zvz_B | 57 | Phd Finger Of Human Uhrf1 Length = 57 | 8e-08 | ||
| 3zvy_A | 72 | Phd Finger Of Human Uhrf1 In Complex With Unmodifie | 1e-07 | ||
| 3t6r_A | 72 | Structure Of Uhrf1 In Complex With Unmodified H3 N- | 1e-07 | ||
| 3sou_A | 70 | Structure Of Uhrf1 Phd Finger In Complex With Histo | 2e-07 | ||
| 3shb_A | 77 | Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 | 2e-07 | ||
| 2lgg_A | 69 | Structure Of Phd Domain Of Uhrf1 In Complex With H3 | 2e-07 | ||
| 3v43_A | 112 | Crystal Structure Of Moz Length = 112 | 3e-07 | ||
| 2ln0_A | 110 | Structure Of Moz Length = 110 | 4e-07 | ||
| 2e6s_A | 77 | Solution Structure Of The Phd Domain In Ring Finger | 5e-07 | ||
| 2puy_A | 60 | Crystal Structure Of The Bhc80 Phd Finger Length = | 6e-07 | ||
| 2l5u_A | 61 | Structure Of The First Phd Finger (Phd1) From Chd4 | 2e-06 | ||
| 1xwh_A | 66 | Nmr Structure Of The First Phd Finger Of Autoimmune | 3e-05 | ||
| 2yql_A | 56 | Solution Structure Of The Phd Domain In Phd Finger | 4e-05 | ||
| 2kft_A | 56 | Nmr Solution Structure Of The First Phd Finger Doma | 7e-05 |
| >pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 | Back alignment and structure |
|
| >pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 | Back alignment and structure |
| >pdb|1F62|A Chain A, Wstf-Phd Length = 51 | Back alignment and structure |
| >pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 | Back alignment and structure |
| >pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 | Back alignment and structure |
| >pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 | Back alignment and structure |
| >pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 | Back alignment and structure |
| >pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 | Back alignment and structure |
| >pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 | Back alignment and structure |
| >pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 | Back alignment and structure |
| >pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 | Back alignment and structure |
| >pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 | Back alignment and structure |
| >pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 | Back alignment and structure |
| >pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112 | Back alignment and structure |
| >pdb|2LN0|A Chain A, Structure Of Moz Length = 110 | Back alignment and structure |
| >pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77 | Back alignment and structure |
| >pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 | Back alignment and structure |
| >pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 | Back alignment and structure |
| >pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 | Back alignment and structure |
| >pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 | Back alignment and structure |
| >pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-26
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 739 ESASEIPKAPWDEGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 798
S+ D +C+VC +DD +L CD CD YH +CL PPL +P G W CP C
Sbjct: 4 GSSGHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
Query: 799 LSGNCKNK 806
+ CK
Sbjct: 64 ILAECKQP 71
|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 | Back alignment and structure |
|---|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 | Back alignment and structure |
|---|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1724 | ||||
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 2e-17 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 3e-17 | |
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 4e-16 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 1e-13 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 3e-13 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 1e-11 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-10 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 2e-08 | |
| d1wesa_ | 71 | g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I | 5e-07 | |
| d2pnxa1 | 51 | g.50.1.2 (A:195-245) Inhibitor of growth protein 4 | 3e-06 | |
| d3dwya1 | 114 | a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { | 8e-06 | |
| d1eqfa1 | 139 | a.29.2.1 (A:1359-1497) TAFII250 double bromodomain | 9e-04 | |
| d1wewa_ | 78 | g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c | 0.001 |
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Nuclear corepressor KAP-1 (TIF-1beta) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.8 bits (186), Expect = 2e-17
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 751 EGVCKVCGIDKDDDNVLLCDTCDSGYHTYCLTPPLTRVPEGNWYCPPC 798
+ +C + + ++++C+ C+ +H C P L VP W C C
Sbjct: 4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 51
|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1724 | |||
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.56 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.53 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.53 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.5 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.43 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 98.87 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 98.76 | |
| d1mm2a_ | 61 | Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 | 98.66 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 98.39 | |
| d1wesa_ | 71 | PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu | 98.22 | |
| d1weea_ | 72 | PHD finger protein At1g33420 {Thale cress (Arabido | 97.94 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 97.74 | |
| d2pnxa1 | 51 | Inhibitor of growth protein 4, Ing4 {Homo sapiens | 97.53 | |
| d1wepa_ | 79 | PHD finger protein 8 {Mouse (Mus musculus) [TaxId: | 97.35 | |
| d1wewa_ | 78 | Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop | 97.3 | |
| d1wema_ | 76 | Death associated transcription factor 1, Datf1 (DI | 97.16 |
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.3e-14 Score=114.19 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999991441465521013568787777787877766433477873678855103544898256676599998
Q 000283 599 IMKQCRKVLRCAAAADEERVFCNLLGRTLLNTSDNDDEGLLGFPAMVSRPLDFRTIDLRLAFGAYGGSHEAFLEDVREVW 678 (1724)
Q Consensus 599 IlKrCr~ILk~Ll~s~~s~~F~~pVd~~lLdleD~i~qGLlGYp~IIkRPMDLGTIDlRLaaG~Y~gs~E~FAeDVRLVW 678 (1724)
+...|..|++.+..++.+++|..||+. ..+++|+.+|++||||.+|..|+..+.|. +.+.|.+|++++|
T Consensus 27 l~~~l~~il~~l~~~~~s~pF~~Pvd~----------~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~li~ 95 (139)
T d1eqfa1 27 LSSILESIINDMRDLPNTYPFHTPVNA----------KVVKDYYKIITRPMDLQTLRENVRKRLYP-SREEFREHLELIV 95 (139)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGTSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHCCCCH----------HHCCCHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
T ss_conf 999999999999829976555179993----------44667898807735499999999748908-9999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7442214798648999898312459999986443
Q 000283 679 HHICTAYSDQSDLLQLAGKLCQNFEVLYKKEVLT 712 (1724)
Q Consensus 679 sNi~tyN~dgSEVv~LAesLSqiFEslYkKqVL~ 712 (1724)
.||..||+.++.++.+|..|...|+..+.+....
T Consensus 96 ~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~ 129 (139)
T d1eqfa1 96 KNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 129 (139)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987999999999999999999999999999
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|